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At least 253 records · Page 14Linked to original sources
USGS2022

Understanding the impacts of surface-groundwater conditions on stream fishes under altered baseflow conditions

Persistence of aquatic fauna depends on the conditions and connectivity of surface water and groundwater. In light of altered baseflows and both current and future predicted increases in stream temperatures, it is important to assess current thermal conditions, examine thermal responses of aquatic fauna, and evaluate water-management practices. Our study objectives were to determine (1) how changes in baseflow levels in the Kiamichi River influence hyporheic exchange, which correspondingly influences temperature at the reach scale; (2) temperature tolerances of stream fishes as a means for predicting how habitat complexity influences stream-fish populations; and (3) assess how dam releases influence the downstream temperature and dissolved oxygen regime during the low-flow period. We quantified hyporheic exchange at four reaches and, as expected, found higher groundwater exchange via transient storage occurred at the upstream sites. The net groundwater flux estimation was negative for the majority of reaches indicating that surface water is lost to groundwater during summer (i.e., losing), baseflow conditions. We determined critical thermal maximum (CTMax) for 17 stream fishes and thermal tolerances ranged 32-38°C. We determined the average thermal tolerance for two habitat fish guilds to calculate changes in thermal stress due to hypothetical reservoir release scenarios. We developed a process-based Water Quality Analysis Simulation Program model to predict downstream temperature conditions over 74-km of river in response to reservoir releases that corresponded to discharges of 0.00 (control), 0.34, 0.59, 0.76, 1.13, and 1.50 m3/s. Based on the dissolved oxygen conditions observed in 2015 and 2017 and biological oxygen demand sampling results, reservoir releases did not directly reduce dissolved oxygen concentrations in the Kiamichi River (though dissolved oxygen concentrations are limited to current water-release strategies by the managing agency). We simulated three scenarios using three water-release temperatures: 27.64°C, 26.00°C and 24.07°C that corresponded to average reservoir temperatures at gate locations on the dam. We compared the predicted temperature time series with CTMax of two fish-habitat guilds to quantify the cumulative time when stream fishes experienced severe thermal stress downstream from Sardis Reservoir. According to our simulations, reservoir releases would be capable of regulating downstream water temperature during the summer baseflow period. The 0.00 m3/s scenario resulted in 130 h of thermal stress for benthic fishes, and 73 h for mid-column fishes. As expected, thermal relief increased with increasing release magnitude and decreasing release water temperature. The 0.34 m3/s release scenario reduced thermal stress (range is simulations from the top and bottom gate) by 11-18% for mid-column fishes and 8-12% for benthic fishes with an effective distance (where the cumulative time above CTMax was reduced by half) of 1-2 km for both guilds. The 0.59 m3/s release scenario reduced thermal stress by 18-25% for mid-column fishes and 12-20% for benthic fishes with effective distances of 4-8 km and 2-7 km, respectively. Three releases representing pre-dam flow magnitudes (0.76, 1.13 and 1.50 m3/s released from top gate) reduced thermal stress up to 46% for mid-column fishes and 41% for benthic fishes with an effective distance of 13-16 km, respectively. Lastly, we quantified temperature-induced stress via whole-body cortisol concentration of six stream fishes in response to prolonged thermal exposure at two temperatures (27°C and 32°C). We found no difference in cortisol levels between temperatures for any of the six species, indicating acclimation to elevated temperatures during the test period. However, Highland Stoneroller Campostoma spadiceum expressed cortisol concentrations greater than typical basal levels at both temperatures, suggesting stress from factors other than temperature (i.e., captivity). Our results suggest different reservoir-release options could improve downstream thermal-fish habitat during the summer baseflow period.

Cooperator Science Series↗
USGS2024

Environmental DNA (eDNA) surveillance of the federally threatened Slender Chub (Erimystax cahni) in the Clinch River and Powell River

The slender chub ( Erimystax cahni ) is a federally threatened fish native to and geographically restricted to eastern North America. More specifically, the Powell, Clinch, and lower Holston Rivers in Tennessee were historical collection areas. Habitat degradation from multiple sources, including surface mining, agriculture, dams, and urbanization, is associated with the decline of this species - an obligate inhabitant of gravel shoals in large rivers. As of 1964, only 15 voucher specimens were known and no living specimens were documented for decades. A federal recovery plan and Species Status Assessment were developed to determine if slender chub still exists and could be restored. Given the lack of recent observations using conventional sampling to search for its presence, we used environmental DNA sampling to determine their potential presence. Our specific objectives were to (1) develop a quantitative polymerase chain reaction (qPCR) assay aimed at species-specific detection and (2) sample historically known areas of collection. We sampled 43 sites in the Clinch and Powell Rivers. For the first time in almost two decades, we provide evidence for the continued existence of a putatively extinct species. We detected evidence of E. cahni in both the Clinch and Powell Rivers, but only at a few sites. We cannot confirm the presence of E. cahni , and positive eDNA matches could be attributed to amplification from a hybrid. Our results do indicate slender chub DNA perseveres in the Clinch and Powell Rivers and can inform resource agencies of localities to pursue on-the-ground searches for the slender chub with conventional methods (e.g., snorkeling) and potential restoration and recovery sites.

Tennessee, Virginia↗
USGS2022

Assessing the distribution and habitat needs of the Least Darter and sympatric species of the Ozark and Arbuckle Mountain ecoregions

Limited information is known about factors driving the distribution of Least Darter in Oklahaoma. The Least Darter occurs in the Ozark Highland and Arbuckle Uplift ecoregions of Oklahoma which represent the southern extent of its range. Least Darter was historically recorded in Oklahoma from groundwater-fed streams. Our study objectives were to determine the distribution of Least Darter and a subset of congeners across the two ecoregions of Oklahoma and assess factors driving patch occupancy of Least Darter at a fine spatial scale. We used temporally replicated snorkel surveys conducted in July through October 2018-2019 to determine occupany by Least Darter. We snorkeled and seined for four species in each reach including two life stages of Smallmouth Bass (subadult and adult). We sampled 153 sites (i.e., riffle-pool complexes) nested within 61 stream reaches (i.e., 200-500-m long) in the Arbuckle Uplift and Ozark Highland ecoregions. Detection probability was similar between ecoregions. Least Darter was detected at more sites when snorkeling compared to seining (24 versus 18). Smallmouth Bass, Redspot Chub and Southern Redbelly Dace were typically 2-3 times more likely to be detected by snorkeling than by seining. We found relationships between occupancy and habitat parameters that were both shared among species but also species-specific. Least Darter occurrence probability in the Ozark Highlands was lower than in the Arbuckle Uplift. Occurrence probability was higher for subadult Smallmouth Bass and Southern Redbelly Dace in 2018 compared to 2019. Occurrence probabilities of both Least Darter and Southern Redbelly Dace were higher in cooler habitat patches. Southern Redbelly Dace was negatively associated with a higher proportion of pool habitat across a reach. Lastly, subadult Smallmouth Bass and Redspot Chub were more likely to occur in deeper pools and in larger streams (i.e., drainage area). We sampled one study reach (~150-m long with shallow riffles or a waterfall on each end) in the Arbuckle Uplift (winter and summer sampling) and Ozark Highland (winter sampling) ecoregions to determine fine-scale habitat selection during the thermally harsh seasons. We developed transects across the reaches to quantify depth, velocity, substrate, cover and water temperature. We found Least Darter used higher water column velocities and shallower water depths with little vegetation during the winter. The average water depth used was similar during summer and winter (~ 20 cm deep). Least Darter used denser vegetation during the summer and tended to avoid coarse substrates in both seasons. If the conservation of Least Darter is a management goal, actions to mitigate increasing stream water temperatures (e.g., protection of springs and riparian corridors) and protecting stream morphologies that facilitate species separations (i.e., allow for a wide range of water depth and velocities) may be beneficial (e.g., fencing cattle from streams, promoting natural bankful flows during spring)

Oklahoma↗
USGS2024

Cumulative effects assessment of restoration programs: A framework to assess achievement of regional and programmatic goals

Increasing global investments focused on conservation and restoration of natural resources aim to address challenges presented by climate change and biodiversity loss. Many restoration and conservation program assessments examine individual actions, assuming additive effects only, failing to acknowledge or capture potential synergistic or antagonistic effects across a region or program. Cumulative effects assessments (CEA) provide a more ecologically relevant framework to assess the outcome of large restoration efforts. These assessments are critical given the increasing frequency of projects and the potential for cross-project interaction, yet there are few efforts to document the presence and patterns of cumulative effects for large-scale restoration programs. Understanding both the individual and cumulative effects of projects within a large restoration program can also inform the conceptualization of future large-scale restoration efforts by enabling the full suite of outcomes to be evaluated and considered against no-action scenarios in future planning. Here, we describe the development of a conceptual framework for CEA from large-scale restoration efforts.

Alabama, Florida↗
USGS2026

Small creatures, big challenge: A review of current knowledge and assessment of research needs to inform water withdrawal management for the Duck River's freshwater mussel fauna

The Duck River is a remarkable national resource, boasting outstanding biodiversity (Ahlstedt et al. 2017). It contains 151 fish species, over 60 mussel species, and 22 snail species, many of which are federally listed (Etnier and Starnes 1993; Johnson et al. 2013; Ahlstedt et al. 2017; Womble and Rosenberger 2025a). The Duck River watershed is at a pivotal time in its management and ecological history due to significant growth in human population and economic activity. The consequent increase in surface water demand presents challenges for sustainable water resource management. The Tennessee Department of Environment and Conservation (TDEC) has permitted or proposed to permit eight water utilities to withdraw over 77 million gallons per day (mgd) from the Duck River, representing > 40% increase from previously permitted amounts (USFWS 2025). On November 20, 2024, Tennessee Governor Bill Lee signed Executive Order No 108 to ensure long-term stability of the Duck River watershed through balancing economic growth, water resource management, and environmental conservation. Some primary components of this plan are the creation of a Comprehensive Regional Drought Management Plan, the development of a Habitat Conservation Plan, and the establishment of the Duck River Watershed Planning Partnership (DRWPP). Although the planning partnership is not focused on a sole aspect of the Duck River, but the watershed as a whole, the mussel assemblages of the Duck River have been a particular focus due to their importance in providing ecosystem services, sensitivity to water quality, conservation status, and sensitivity to periodic drought conditions in this system. With multiple state and federal agencies involved in managing the Duck River’s unique water resources, a focused review on how future water management could affect the freshwater mussel communities in the Duck River will contribute to this process. Our objectives of this review are to: 1. Review the effects of changing flow regimes on mussels, with emphasis on the effect of droughts/low flows, highlighting key processes/factors affecting mussels. 2. Highlight critical data gaps that could allow future, evidence-based water management decisions in this system. 3. Propose research topics to address critical data gaps and enable evidence-based water management decisions that consider the needs of freshwater mussels. Freshwater mussels are a critical component of riverine ecosystems, providing ecosystem services including water filtration, nutrient cycling, and habitat provision (Vaughn et al. 2004; Haag 2012) that benefit human communities. Environmental flows, also referred to as ecological or e-flows, refer to the quantity, timing, and quality of water flows necessary to maintain the ecological health of rivers, wetlands, and other aquatic ecosystems (Acreman and Dunbar 2004; Acreman 2016). For freshwater mussels, environmental flows include maintaining a flow regime and associated water quality regimes that are favorable for both juveniles and adults while also seasonally supporting host fish and the survival of settling glochidia (i.e., larval mussels) in suitable environments (Gates et al. 2015). Freshwater mussels are adapted to the natural flow regime of their native streams, including seasonal variability in flows. As sedentary filter feeders, mussels require adequate water flow to provide oxygen and food (Allen and Vaughn 2009); however, they also require periods of low flow to increase access to fish hosts and to ensure juveniles are not displaced (Gates et al 2015). Mussels are sensitive to water quality conditions, including pollutants, sedimentation, and artificial alterations of temperature and pH (Strayer and Malcom 2012). Mussel community characteristics, including presence, abundance, and species richness, generally increase with stream size (e.g., stream order); however, responses to changes in flow conditions are often species-specific, and the magnitude and timing of extreme flow conditions have more predictive power for mussel community response than general changes in flow (Lopez and Vaughn 2021). Complex hydraulic variables, such as relative shear stress and Reynolds number, can be strong predictors of mussel community responses because they combine simple hydraulic variables (e.g., velocity, depth) with stream channel characteristics, such as substrate composition and dynamics. Droughts directly and indirectly affect mussels by influencing their physiology, behavior, reproduction, and ecosystem roles. Mass mussel die-offs during droughts and low water conditions are widely documented (Vaughn et al. 2015; Sousa et al. 2018; Dubose et al. 2019). Droughts can also lead to a shift in mussel community composition, with drought-tolerant species becoming more dominant while more sensitive species experience declines (Galbraith et al, 2010; Lopez et al. 2022; Vaughn and Atkinson 2025). Droughts affect mussels through direct mortality from stranding as well as physiological stress from altered water temperature and quality, reduced habitat and food availability and quality, increased predation and competition, disruption of reproductive cycles, and increased susceptibility to disease and pathogens. Although the effects of droughts, water withdrawals, and low flow conditions on mussels are an increasing area of study, there is a general paucity of data-driven consensus regarding optimal mitigation approaches and strategies (Cushway et al. 2024). Long-term management decisions regarding water withdrawals, particularly during extended or multi-year drought conditions, may consider factors beyond direct mortality such as the sublethal effects of drought and low flow conditions on freshwater mussels for a comprehensive understanding of the effects of prolonged low flows on freshwater mussels and aquatic communities.

Tennessee↗
USGS1989

Gazetteer of the Antarctic

This gazetteer lists antarctic names approved by the United States Board on Geographic Names and by the Secretary of the Interior. The Board is the interagency body created by law to standardize and promulgate geographic names for official purposes. As the official standard for names in Antarctica, the gazetteer assures accuracy and uniformity for the specialist and the general user alike. Unlike the last (1981) edition, now out of print, the book contains neither historical notes nor textual descriptions of features. The gazetteer contains names of features in Antarctica and the area extending northward to the Antarctic Convergence that have been approved by the Board as recently as mid-1989. It supersedes previous Board gazetteers for the area. For each geographic feature, the book contains the name, cross references if any, and latitude and longitude. Coverage corresponds to that of maps at the scale of 1:250,000 or larger for islands, coastal Antarctica, and mountains and ranges of the continent. Much of the interior of Antarctica, an ice plateau, has been mapped at a smaller scale and is nearly devoid of features and toponyms. All of the names are for natural features; scientific stations are not listed. For the names of submarine features, reference should be made to the Gazetteer of Undersea Features, U.S. Board on Geographic Names (1981).

Report↗
USGS1995

Geographic names of the Antarctic

This gazetteer contains 12,710 names approved by the United States Board on Geographic Names and the Secretary of the Interior for features in Antarctica and the area extending northward to the Antarctic Convergence. Included in this geographic area, the Antarctic region, are the off-lying South Shetland Islands, the South Orkney Islands, the South Sandwich Islands, South Georgia, Bouvetøya, Heard Island, and the Balleny Islands. These names have been approved for use by U.S. Government agencies. Their use by the Antarctic specialist and the public is highly recommended for the sake of accuracy and uniformity. This publication, which supersedes previous Board gazetteers or lists for the area, contains names approved as recently as December 1994. The basic name coverage of this gazetteer corresponds to that of maps at the scale of 1:250,000 or larger for coastal Antarctica, the off-lying islands, and isolated mountains and ranges of the continent. Much of the interior of Antarctica is a featureless ice plateau. That area has been mapped at a smaller scale and is nearly devoid of toponyms. All of the names are for natural features, such as mountains, glaciers, peninsulas, capes, bays, islands, and subglacial entities. The names of scientific stations have not been listed alphabetically, but they may appear in the texts of some decisions. For the names of submarine features, reference should be made to the Gazetteer of Undersea Features , 4th edition, U.S. Board on Geographic Names, 1990.

Report↗
USGS2000

Strategic science plan Salton Sea restoration project

The Salton Sea is an ecosystem in peril. Its prehistory consists of a series of intermittent lakes dependent on infrequent flooding of the Colorado River, while the modern Salton Sea originated from the desire to harness the flow of the Colorado River for irrigation. What began as an accident of this attempt is now a permanent inland sea supported by wastewater and agricultural drainage rather than Colorado River flood flows. However, environmental degradation is challenging the ability of the Sea to sustain the biological components that society has learned to value as characteristics of this waterbody. Increasing salinity and increasing frequency and magnitude of wildlife losses indicate the Sea is under severe environmental stress. The Salton Sea Restoration Project originated to reverse this degradation, to stabilize fluctuating water levels, and to provide a permanent waterbody that sustains values of the human society that uses it. The project foundation is provided by Public Law (PL) 102-575, passed by Congress in 1992. PL 102-575 directs the Secretary of the Interior to "conduct a research project for the development of a method or combination of methods to reduce and control salinity, provide endangered species habitat, enhance fisheries, and protect human recreational values . . . in the area of the Salton Sea." That PL was followed by the Salton Sea Reclamation Act of 1998 (PL 105-372), which directs the Secretary of the Interior to "complete all studies, including, but not limited to environmental and other reviews, of the feasibility and benefit-cost of various options that permit the continued use of the Salton Sea."

Report↗
USGS2015

Investing in citizen science can improve natural resource management and environmental protection

Citizen science has made substantive contributions to science for hundreds of years. More recently, it has contributed to many articles in peer-reviewed scientific journals and has influenced natural resource management and environmental protection decisions and policies across the nation. Over the last 10 years, citizen science—participation by the public in a scientific project—has seen explosive growth in the United States, particularly in ecology, the environmental sciences, and related fields of inquiry. In this report, we explore the current use of citizen science in natural resource and environmental science and decision making in the United States and describe the investments organizations might make to benefit from citizen science.

Issues in Ecology↗
USGS2016

Establishing links between streamflow and ecological integrity in the Sudbury River (Northeastern U.S.)

With increased pressure from a growing human population, managers are challenged to understand how novel disturbances (e.g., climate change, increased water withdrawals, urbanization) may affect natural resources. The Sudbury River is a National Wild and Scenic River located in suburban Boston, Massachusetts (Northeastern US) with myriad impairments (e.g., mainstem impoundments, withdrawals, and urbanization) that is under increasing pressure from hydrologic alteration. We sampled fish, mussel, and macroinvertebrate assemblages in the Sudbury River and used species traits to investigate potential effects of past and future flow alteration on biota. Analysis of 33 years of stream gage data indicates continued hydrologic alteration of the Sudbury River, likely related to increased urbanization and water withdrawals over that time. These changes include a roughly 200% increase in rise rates of flows, an approximate 65% decrease in 1-day minimum flows, and a trend towards increasing high flow pulse counts. Biotic sampling in summer of 2014 demonstrated that the Sudbury River is now dominated by generalist species. Of five mussel species sampled, all are generalists in their habitat requirements. Though one mussel species of special concern was sampled, the most abundant species collected were the widespread Eastern elliptio (58%) and Eastern lampmussel (40%). We used the target fish community (TFC) model to assess the degree to which the fish assemblage deviated from that expected for a river with similar zoogeographic and physical features. Overall, the current community has a 22.7% similarity to the TFC. Of the four fluvial specialist species present in the TFC, only fallfish was sampled in our study. While the TFC showed that the historical assemblage was likely dominated by fluvial specialist and fluvial dependent species, the current assemblage is overwhelmingly dominated by macrohabitat generalists (90.6% of fishes sampled). These results are consistent with other studies that show shifts in assemblages from fluvial specialists to habitat generalists with hydrologic alteration. If the current trends continue, it is likely that biotic assemblages will experience increasing pressure from hydrologic alteration. While hydrologic alteration is likely impacting biotic assemblages in the Sudbury River, other factors such as high temperatures, low dissolved oxygen, high nutrients, low availability of high-quality habitat, and poor habitat connectivity may also be negatively impacting biotic assemblages. Comparisons to other rivers and a complete longitudinal habitat survey could help to identify availability of unique habitats and representativeness of this study. While this study suggests impacts of flow on biota, future studies with quantitative, habitat-specific sampling during different flow levels could help to directly identify links between hydrologic alteration and biotic impairment in the Sudbury River.

Massachussetts↗
USGS2017

The Partners in Flight handbook on species assessment Version 2017

Partners in Flight (PIF) is a cooperative venture of federal, state, provincial, and territorial agencies, industry, non-governmental organizations, researchers, and many others whose common goal is the conservation of North American birds (www.partnersinflight.org). While PIF has focused primarily on landbirds, it works in conjunction with other bird partners to promote coordinated conservation of all birds. PIF follows an iterative, adaptive planning approach that develops a sound scientific basis for decision-making and a logical process for setting, implementing, and evaluating conservation objectives (Pashley et al. 2000, Rich et al. 2004, Berlanga et al. 2010). The steps include: 1. Assessing conservation vulnerability of all bird species; 2. Identifying species most in need of conservation attention at continental and regional scales; 3. Setting of numerical population objectives for species of continental and regional importance; 4. Identifying conservation needs and recommended actions for species and habitats of importance; 5. Implementing strategies for meeting species and habitat objectives at continental and regional scales; 6. Evaluating success, making revisions, and setting new objectives for the future. The 2017 PIF Handbook on Species Assessment (2017 PIF Handbook) documents assessment rules and scores used in the Partners in Flight Landbird Conservation Plan: 2016 Revision for Canada and Continental United States (Rosenberg et al. 2016) and The State of North America’s Birds 2016 (NABCI 2016). It updates previous versions of the handbook (Panjabi et al. 2012, 2005, 2001) developed to accompany other PIF applications including Saving Our Shared Birds: Partners in Flight Tri-National Vision for Landbird Conservation (Berlanga et al. 2010) and the North American Landbird Conservation Plan (Rich et al. 2004). All current and past scores, data sources, and other related information are contained in databases hosted by the Bird Conservancy of the Rockies. Scores can be viewed online and downloaded as excel files, including archived versions (http://pif.birdconservancy.org/acad). The current accompanying Avian Conservation Assessment Database (ACAD) holds assessment scores and data for all 1585 native and 18 well-established non-native bird species found in mainland North America south to Panama plus adjacent islands and oceans. The taxonomy follows the American Ornithological Society’s 7th Edition Checklist of North and Middle American Birds, including updates though the 57th supplement, published in 2016 (http://checklist.aou.org/). The ACAD builds on archived PIF databases that hosted only data on the 882 landbirds native to Canada, USA and Mexico. This handbook is presented in two principal sections. Part I details the factors and scoring used by PIF to assess the vulnerability of species at continental and regional scales (i.e. step 1 of the planning approach above). Each assessment factor is based on biological criteria that evaluate distinct components of vulnerability throughout the life cycle of each species across its range. Part II describes the process of how the factors and the corresponding scores can be combined to highlight conservation needs (i.e. step 2 of the planning approach above). Both the scores and the process have evolved over time (Hunter et al. 1992, Carter et al. 2000, Panjabi et al. 2001, 2005, 2012) and continue to be updated in response to external review (Beissinger et al. 2000), broad partner expertise, and the emergence of new data and analytical tools.

Report↗
USGS2016

Estimating black bear density in New Mexico using noninvasive genetic sampling coupled with spatially explicit capture-recapture methods

During the 2004–2005 to 2015–2016 hunting seasons, the New Mexico Department of Game and Fish (NMDGF) estimated black bear abundance (Ursus americanus) across the state by coupling density estimates with the distribution of primary habitat generated by Costello et al. (2001). These estimates have been used to set harvest limits. For example, a density of 17 bears/100 km2 for the Sangre de Cristo and Sacramento Mountains and 13.2 bears/100 km2 for the Sandia Mountains were used to set harvest levels. The advancement and widespread acceptance of non-invasive sampling and mark-recapture methods, prompted the NMDGF to collaborate with the New Mexico Cooperative Fish and Wildlife Research Unit and New Mexico State University to update their density estimates for black bear populations in select mountain ranges across the state. We established 5 study areas in 3 mountain ranges: the northern (NSC; sampled in 2012) and southern Sangre de Cristo Mountains (SSC; sampled in 2013), the Sandia Mountains (Sandias; sampled in 2014), and the northern (NSacs) and southern Sacramento Mountains (SSacs; both sampled in 2014). We collected hair samples from black bears using two concurrent non-invasive sampling methods, hair traps and bear rubs. We used a gender marker and a suite of microsatellite loci to determine the individual identification of hair samples that were suitable for genetic analysis. We used these data to generate mark-recapture encounter histories for each bear and estimated density in a spatially explicit capture-recapture framework (SECR). We constructed a suite of SECR candidate models using sex, elevation, land cover type, and time to model heterogeneity in detection probability and the spatial scale over which detection probability declines. We used Akaike’s Information Criterion corrected for small sample size (AICc) to rank and select the most supported model from which we estimated density. We set 554 hair traps, 117 bear rubs and collected 4,083 hair samples. We identified 725 (367 M, 358 F) individuals; the sex ratio for each study area was approximately equal. Our density estimates varied within and among mountain ranges with an estimated density of 21.86 bears/100 km2 (95% CI: 17.83 – 26.80) for the NSC, 19.74 bears/100 km2 (95% CI: 13.77 – 28.30) in the SSC, 25.75 bears/100 km2 (95% CI: 13.22 – 50.14) in the Sandias, 21.86 bears/100 km2 (95% CI: 17.83 – 26.80) in the NSacs, and 16.55 bears/100 km2 (95% CI: 11.64 – 23.53) in the SSacs. Overall detection probability for hair traps and bear rubs, combined, was low across all study areas and ranged from 0.00001 to 0.02. We speculate that detection probabilities were affected by failure of some hair samples to produce a complete genotype due to UV degradation of DNA, and our inability to set and check some sampling devices due to wildfires in the SSC. Ultraviolet radiation levels are particularly high in New Mexico compared to other states where NGS methods have been used because New Mexico receives substantial amounts of sunshine, is relatively high in elevation (1,200 m – 4,000 m), and is at a lower latitude. Despite these sampling difficulties, we were able to produce density estimates for New Mexico black bear populations with levels of precision comparable to estimated black bear densities made elsewhere in the U.S. Our ability to generate reliable black bear density estimates for 3 New Mexico mountain ranges is attributable to our use of a statistically robust study design and analytical method. There are multiple factors that need to be considered when developing future SECR-based density estimation projects. First, the spatial extent of the population of interest and the smallest average home range size must be determined; these will dictate size of the trapping array and spacing necessary between hair traps. The number of technicians needed and access to the study areas will also influence configuration of the trapping array. We believe shorter sampling occasions could be implemented to reduce degradation of DNA due to UV radiation; this might help increase amplification rates and thereby increase both the number of unique individuals identified and the number of recaptures, improving the precision of the density estimates. A pilot study may be useful to determine the length of time hair samples can remain in the field prior to collection. In addition, researchers may consider setting hair traps and bear rubs in more shaded areas (e.g., north facing slopes) to help reduce exposure to UV radiation. To reduce the sampling interval it will be necessary to either hire more field personnel or decrease the number of hair traps per sampling session. Both of these will enhance detection of long-range movement events by individual bears, increase initial capture and recapture rates, and improve precision of the parameter estimates. We recognize that all studies are constrained by limited resources, however, increasing field personnel would also allow a larger study area to be sampled or enable higher trap density. In conclusion, we estimated the density of black bears in 5 study areas within 3 mountains ranges of New Mexico. Our estimates will aid the NMDGF in setting sustainable harvest limits. Along with estimates of density, information on additional demographic rates (e.g., survival rates and reproduction) and the potential effects that climate change and future land use may have on the demography of black bears may also help inform management of black bears in New Mexico, and may be considered as future areas for research.

New Mexico↗
USGS2016

Evaluation and refinement of Guadalupe Bass conservation strategies to support adaptive management

Burbot Lota lota is the sole freshwater representative of the cod-like fishes and supports subsistence, commercial, and recreational fisheries worldwide above approximately 40° N. It is a difficult species to manage effectively due to its preference for deep-water habitats and spawning activity under the ice in winter. Like other gadiform fishes, Burbot use acoustic signaling as part of their mating system, and while the acoustic repertoire of the species has been characterized under artificial conditions (i.e., net pen suspended under ice in a natural lake), there has been no work to determine whether the species is as vocal in natural spawning aggregations. Our objective was to assess the feasibility of collecting and using acoustic data to characterize the spawning activity and locations of Burbot under field conditions. We recorded audio and video of Burbot spawning aggregations through holes drilled into the ice at known spawning grounds at Moyie Lake in British Columbia, Canada. Acoustic recordings (call counts and audiograms) were analyzed using Raven Pro v 1. 4 software. Acoustic behavior was also related to video data to determine how acoustic activity correlated to any observed spawning behavior. In general, wild Burbot spawning in Moyie Lake did not vocalize as frequently as counterparts spawning under artificial conditions. Further, Burbot vocalizations were not recorded in conjunction with spawning activity. While it may be feasible to use passive acoustic monitoring to locate Burbot spawning grounds and identify periods of activity, it does not seem to hold much promise for locating and quantifying spawning activity in real time.

Cooperator Science Series↗
USGS2016

Prioritizing landscapes for longleaf pine conservation

We developed a spatially explicit model and map, as a decision support tool (DST), to aid conservation agencies creating or maintaining open pine ecosystems. The tool identified areas that are likely to provide the greatest benefit to focal bird populations based on a comprehensive landscape analysis. We used NLCD 2011, SSURGO, and SEGAP data to map the density of desired resources for open pine ecosystems and six focal species of birds and 2 reptiles within the historic range of longleaf pine east of the Mississippi River. Binary rasters were created of sites with desired characteristics such as land form, hydrology, land use and land cover, soils, potential habitat for focal species, and putative source populations of focal species. Each raster was smoothed using a kernel density estimator. Rasters were combined and scaled to map priority locations for the management of each focal species. Species’ rasters were combined and scaled to provide maps of overall priority for birds and for birds and reptiles. The spatial data can be used to identify high priority areas for conservation or to compare areas under consideration for maintenance or creation of open pine ecosystems.

Cooperator Science Series↗
USGS2014

Restoration of Rio Grande cutthroat trout Oncorhynchus clarkii virginalis to the Mescalero Apache Reservation

Rio Grande Cutthroat trout Oncorhynchus clarkii virginalis (RGCT) represents the most southern subspecies of cutthroat trout, endemic to Rio Grande, Canadian, and Pecos basins of New Mexico and southern Colorado. The subspecies currently occupies less than 12% of its historic range. The Mescalero Apache Tribe has partnered with U.S. Geological Survey-New Mexico Cooperative Fish and Wildlife Research Unit, New Mexico State University, U.S. Fish and Wildlife Service, and New Mexico Department of Game and Fish to meet mutually shared goals of restoring and maintaining a Pecos strain of RGCT to Tribal lands. The goal of this project was to assess the suitability of the Rio Ruidoso within the Mescalero Apache Reservation to support a self-sustaining RGCT population by conducting a systematic and comprehensive survey. We conducted three surveys (fall 2010, spring 2011 and 2012) to characterize water quality, macroinvertebrate assemblages, fish communities, and physical habitat (stream size, channel gradient, channel substrate, habitat complexity, riparian vegetation cover and structure, migration barriers to movement). Seven-100 m reaches throughout three major tributaries of the Rio Ruidoso within the Tribal lands were sampled during baseflow conditions October 2010, May 2011, and June 2012. Despite the onset of severe drought in 2011, water quality, physical habitat, and fish populations revealed that the Rio Ruidoso and its three tributaries would most likely support a self-sustaining RGCT population. Pools were abundant (mean, 8.9 pools/100 m), instream woody debris was present (range, 3.8-45.6 pieces/100 m), and instream dataloggers revealed daily maximum stream temperatures rarely exceeded criteria established in New Mexico for coldwater fishes, however, presence of frazil and anchor ice may limit fish distribution in the winter. Aquatic macroinvertebrate samples revealed a community of benthic invertebrates reflective of high quality cool to cold water. Overall densities of brown trout, rainbow trout and brook trout were high (overall mean, 0.23 fish/m2) and in relatively good condition (range of mean relative weight, 84-117). Should the Mescalero Apache Tribe decide to introduce RGCT, prior to chemical treatment, a barrier placed below the confluence of Middle and South forks of the Rio Ruidoso would create approximately 12 km of perennial flow and help protect against invasion of non-native fishes. The North Fork of the Rio Ruidoso is not a good candidate for reintroduction because of easy access by the public to reintroduce non-native fishes into the watershed. Lastly, an annual, long-term monitoring program of RGCT would help document that there was no subsequent incursion of non-native fishes.

Cooperator Science Series↗
USGS2017

Using population models to evaluate management alternatives for Gulf Striped Bass

Interstate management of Gulf Striped Bass Morone saxatilis has involved a thirty-year cooperative effort involving Federal and State agencies in Georgia, Florida and Alabama (Apalachicola-Chattahoochee-Flint Gulf Striped Bass Technical Committee). The Committee has recently focused on developing an adaptive framework for conserving and restoring Gulf Striped Bass in the Apalachicola, Chattahoochee, and Flint River (ACF) system. To evaluate the consequences and tradeoffs among management activities, population models were used to inform management decisions. Stochastic matrix models were constructed with varying recruitment and stocking rates to simulate effects of management alternatives on Gulf Striped Bass population objectives. An age-classified matrix model that incorporated stock fecundity estimates and survival estimates was used to project population growth rate. In addition, combinations of management alternatives (stocking rates, Hydrilla control, harvest regulations) were evaluated with respect to how they influenced Gulf Striped Bass population growth. Annual survival and mortality rates were estimated from catch-curve analysis, while fecundity was estimated and predicted using a linear least squares regression analysis of fish length versus egg number from hatchery brood fish data. Stocking rates and stocked-fish survival rates were estimated from census data. Results indicated that management alternatives could be an effective approach to increasing the Gulf Striped Bass population. Population abundance was greatest under maximum stocking effort, maximum Hydrilla control and a moratorium. Conversely, population abundance was lowest under no stocking, no Hydrilla control and the current harvest regulation. Stocking rates proved to be an effective management strategy; however, low survival estimates of stocked fish (1%) limited the potential for population growth. Hydrilla control increased the survival rate of stocked fish and provided higher estimates of population abundances than maximizing the stocking rate. A change in the current harvest regulation (50% harvest regulation) was not an effective alternative to increasing the Gulf Striped Bass population size. Applying a moratorium to the Gulf Striped Bass fishery increased survival rates from 50% to 74% and resulted in the largest population growth of the individual management alternatives. These results could be used by the Committee to inform management decisions for other populations of Striped Bass in the Gulf Region.

Cooperator Science Series↗
USGS2017

Variation and plasticity and their interaction with urbanization in Guadalupe Bass populations on and off the Edwards Plateau

The Colorado River Basin in Texas has experienced major alterations to its hydrologic regime due to changing land and water use patterns. These anthropogenic influences on hydrologic variability have had major implications for riparian and aquatic ecosystems and the species dependent upon them. However, impacts are often assessed at a limited temporal and spatial scale, tending to focus on relatively short and discrete periods or portions of a river basin. It is not clear how basin-wide alterations occurring over decades affect species. Guadalupe Bass Micropterus treculii are endemic to central Texas and are typically associated with shallow runs and riffles in small streams. However, Guadalupe Bass are found throughout the Colorado River Basin, including the mainstem portion of the lower river downstream of the city of Austin where they support a popular fishery. Because Guadalupe Bass exist across a wide range of stream orders within the basin, it is unclear whether populations respond similarly to anthropogenic disturbances or to conservation and restoration activities. Therefore, our objectives were to: Assess the effects of urbanization and hydrology on the population structure and dynamics of Guadalupe Bass. Evaluate the effects of environmental gradients on ecomorphological variation in Guadalupe Bass populations across multiple spatial scales. Describe the life history, habitat use, and behavior of the Guadalupe Bass population in the lower Colorado River and compare it to populations in more “typical” habitats. Results contribute to an understanding of the response of Guadalupe Bass to anthropogenic disturbances, including increased urbanization in central Texas and further assist in the conservation of the species. The ability of the population to not only persist, but flourish downstream of a heavily populated urban area presented a unique opportunity to investigate a native species response to anthropogenic disturbance. This research revealed differences in Guadalupe Bass habitat associations and movements, contrasts in age and growth, and morphological variation across a gradient of disturbance throughout the Colorado River Basin. Results of this work provide information on the potential effects of human population growth and increased water withdrawals on Guadalupe Bass populations. Additionally, this work adds to an understanding of the unique Guadalupe Bass population found in the lower Colorado River and how it differs from upstream tributary populations. Gathering additional population-level information facilitates conservation actions critical to preserving preferred habitat and promoting growth rates for Guadalupe Bass in streams of different sizes and flow conditions while highlighting interpopulation differences that may warrant consideration for stocking programs and other management strategies. Key findings of this study were: The similarity in response of growth rates to streamflow throughout the Colorado Basin suggests phenotypic plasticity in this trait rather than population-specific adaptations. Reductions in streamflows in the Colorado River Basin, whether due to increased frequency of drought or increased anthropogenic water withdrawal, will likely result in lower Guadalupe Bass growth rates with the potential to impact the structure of populations. Growth and recruitment showed a positive correlation with increased baseflows and mean monthly flows; however, continued assessment is necessary to determine a true relationship. We documented morphological divergence among Guadalupe Bass populations in response to spatial and temporal environmental variation. These ecomorphological differences among populations provide insight into the ability of Guadalupe Bass to respond to the differing in-stream habitat and flow conditions between small ‘typical’ tributary systems and the mainstem Colorado River. Morphological variation may be a population-level adaptation that potentially needs to be taken into consideration when choosing broodstock to maximize stocking success within a system. Understanding the morphological differences between Guadalupe Bass populations in response to local conditions could improve the success of restoration and supplemental stocking programs, especially in the ever-changing landscape of central Texas. We established a baseline for understanding the morphological response of Guadalupe Bass to increased population growth and the threats posed by increased water withdrawals and impervious surface. The mainstem population of Guadalupe Bass was generally more mobile, and more responsive to changes in streamflow, than tributary populations. The observed differences could influence the response of Guadalupe Bass populations to conservation and management actions, such as habitat restoration efforts. Continued monitoring of recruitment and angler exploitation may be beneficial to identify any changes that could negatively impact the population. Conservation initiatives solely focused on physical instream or riparian habitat are unlikely to be as beneficial to Guadalupe Bass as those focused on restoring or maintaining adequate streamflow

Cooperator Science Series↗