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USGS2024

Snake River Fall Chinook Salmon research and monitoring

In Chapter 1, we report on development and application of an integrated population model (IPM) for the natural-origin fall Chinook salmon population upstream of Lower Granite Dam. This year’s efforts represent the third update to the model. Initial efforts focused on generating juvenile and adult abundance estimates, with estimates of uncertainty, for informing the life-cycle model and estimating the effects of covariates on key demographic parameters. The goals of this year’s report are to 1) describe the modifications and advances made since the previous report, 2) to annually update and report the abundance estimates and other quantities used in the model, 3) to provide annual estimates of population parameters estimated by the IPM, and 4) to outline the next year’s tasks for advancing and/or applying the model. Since our last report on the life-cycle model, we have made a number of changes including: 1) incorporating jack abundance and age-structure data into the observation model, 2) changing smolt-to-adult survival (SAR) for subyearling and yearling to partial SARs that represent the joint probability surviving and entering the ocean at a given juvenile age, 3) combining age categories for rarely observed ages, 4) using scale data from unmarked fish to estimate age structure, and 5) generating composite life-cycle demographic parameters (cumulative capacity and productivity) from stage-specific parameters. We also generated juvenile abundance estimates, extended the model to include three additional brood years (1992– 2021), and ran the model to forecast returns to Lower Granite in 2022. For posterior medians of life stage-specific parameters, we estimated a mean productivity of 438 natural-origin juvenile recruits per female spawner, a capacity of 1.36 million juveniles, and a mean smolt-to-adult survival (SAR) of 1.2%. We detected strong density-dependent regulation, with juvenile recruits per spawner declining to about 50 juvenile recruits per female spawner at high spawner abundance. Across the entire life cycle, these stage-specific parameters resulted in a median cumulative intrinsic productivity of 1.93 adult female recruits per female spawner and a median equilibrium abundance of 2,851 female spawners (7,842 total spawners). Annual juvenile productivity varied from about 250–1,000 juveniles per spawner but displayed no temporal trends or patterns. For the three most recent brood years added to the model, recruits per spawner were higher than average but well within the range of uncertainty observed over the entire time series. In contrast to juvenile recruitment variability, SAR varied considerably among years and exhibited two periods of high survival (1996–2001 and 2007–2012) when SAR ranged from 2% to 6% and cumulative productivity ranged from 2 to 8 recruits per spawner. Partial SARs revealed that yearling outmigrants contributed substantially to the high SARs in the first high-survival period, but the second period was dominated by subyearlings. Yearlings contributed >30% to SAR in most years prior to 2007, and <30% since 2007. Our two-stage IPM provides a wealth of information about population dynamics affecting two key life-stage transitions (spawner to juvenile, and juvenile to spawner) centered on passage at Lower Granite Dam. By summarizing these stage-specific demographic parameters across the entire life cycle, this information will be useful for informing the recovery status of this threatened population. Whereas previous versions introduced hydrosystem and ocean covariates into the model, this phase of model development focused on solidifying the underlying model structure by introducing the concept of partial SARs and developing composite productivity and capacity as a function of underlying stage-specific parameters. Given this advancement, our next steps are to re-incorporate covariates into the model, specifically to understand how different factors affect partial SARs of subyearling and yearlings. Longer term model developments include:1) incorporating hatchery fish to explicitly estimate their survival as an alternative method for estimating natural-origin age composition, 2) expanding the model’s structure to include the three major spawning aggregates, 3) more explicitly modeling hydrosystem effects including transportation, and 4) using the model to assess retrospective and prospective management actions. In 2022, the U.S. Geological Survey (USGS) focused adult salmon survey efforts in the Snake River on deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses. We use used a boat-mounted underwater video camera to count 99 deepwater redds at 16 of the 29 sites surveyed. Redd depths averaged 4.4 m. In conjunction with the Idaho Power Company, we collected genetic samples from 318 live fall Chinook salmon (Oncorhynchus tshawytscha) and 19 carcasses at 40 unique geographic locations that spanned 91 river kilometers. Eighty fish were collected at three sites (High Range [rkm 332.3], Dug Bar [rkm 315.4], and Three Creek [rkm 384.0]), which accounted for 23% of all collected fish in 2022. Most (333 fish) post-spawned salmon were collected from early to mid-November just after the peak of spawning. A summary of 2021 PBT results produced by the Idaho Power Company can be found in Appendix A.2. Beach seining and PIT tagging of subyearling fall Chinook salmon was conducted in Snake and Salmon rivers to obtain information on population metrics and growth as well as to provide data for ongoing life-cycle modeling. In the Snake River, we collected 7,496 subyearlings, tagged 4,139, and recaptured 502 (12.1%). Using 8-mm tags in 45–49-mm fish allowed us to represent an additional 25% of the juvenile population through PIT tagging beyond just using standard 9- and 12-mm tags. In the Salmon River, we captured 206 natural subyearlings with the majority (52%) of fish being captured at two sites: rkm 20 and 26. We tagged 145 subyearlings and recaptured 9 fish. Many of the subyearlings we tagged in the Snake River were detected passing Lower Granite Dam, but only 4 fish tagged in the Salmon River were detected. In total we detected 484 (11.3%) tagged fish at Lower Granite Dam, and detection rates varied by tag size and passage route. More subyearlings were detected passing via the removable spill weir (RSW) earlier in the season while more fish were detected passing through the juvenile fish bypass system (JBS) earlier in the season while more fish were detected passing via the removable spill weir (RSW) later in the season. In general, fish tagged with 12-mm PIT tags had higher detection rates than fish tagged with smaller tags. Survival to Lower Granite Dam was low and ranged from 0.22 to 0.36. Season-wide, growth of subyearlings was higher in the lower reach than in the upper reach of the Snake River.

Idaho, Oregon, Washington↗

USGS2020

Fates and fingerprints of sulfur and carbon following wildfire in economically important croplands of California, U.S.

Sulfur (S) is widely used in agriculture, yet little is known about its fates within upland watersheds, particularly in combination with disturbances like wildfire. Our study examined the effects of land use and wildfire on the biogeochemical “fingerprints,” or the quantity and chemical composition, of S and carbon (C). We conducted our research within the Napa River Watershed, California, U.S., where high S applications to vineyards are common, and ~ 20% of the watershed burned in October 2017, introducing a disturbance now common across the warmer, drier Western U.S. We used a laboratory rainfall experiment to compare unburned and low severity burned vineyard and grassland soils. We then sampled streams draining sub-catchments with differing land use and degrees of burn and burn severity to understand combined effects at broader spatial scales. Before the laboratory experiment, vineyard soils had 2–3.5 times more S than grassland soils, while burned soils—regardless of land use—had 1.5–2 times more C than unburned soils. During the laboratory experiment, vineyard soil leachates had 16–20 times more S than grassland leachates, whereas leachate C was more variable across land use and burn soil types. Unburned and burned vineyard soils leached S with δ 34 S values enriched 6–15‰ relative to grassland soils, likely due to microbial S processes within vineyard soils. Streams draining vineyards also had the fingerprint of agricultural S, with ~2–5 fold higher S concentrations and ~ 10‰ enriched δ 34 S-SO 4 2− values relative to streams draining non-agricultural areas. However, streams draining a higher fraction of burned non-agricultural areas also had enriched δ 34 S values relative to unburned non-agricultural areas, which we attribute to loss of 32 S during combustion. Our findings illustrate the interacting effects of wildfire and land use on watershed S and C cycling—a new consideration under a changing climate, with significant implications for ecosystem function and human health.

California↗

USGS2018

Defining “atmospheric river”: How the Glossary of Meteorology helped resolve a debate

Since the term “atmospheric river” (AR) first appeared in modern scientific literature in the early 1990s, it has generated debate about the meaning of the concept. A common popular definition is something along the lines of a “river in the sky,” albeit as a river of water vapor rather than of liquid. This general concept has come into regular use in the western United States and in some other regions affected by ARs, partly due to its use by media, and due to the intuitive nature of the concept. However, over the last 20 years there have been varying perspectives on the term in the technical community. These perspectives range roughly from considering it duplicative of preexisting concepts, such as the warm conveyor belt (WCB), to arguments that the analogy to terrestrial rivers is inappropriate, to being a primary topic of focused research, applications, and usage by water managers.

Bulletin of the American Meteorological Society↗

USGS2023

Hydrologic modeling and river corridor applications of HY_Features concepts

The WaterML2: Part 3 - Surface Hydrology Features (HY_Features) Conceptual Model was published by OGC in 2018. This report documents the use of HY_Features concepts in support of two key tasks: (1) local to continental hydrologic modeling; and (2) referencing river corridor data to hydrographic networks. The presented use cases are applicable in hydroscience research and assessments, water resources engineering practices, and drought and flood responses. Before the HY_Features conceptual model there was no internationally recognized standard for the design of software and data for the hydroscience and engineering community. This report presents progress towards a logical data model that interprets the abstract HY_Features concepts for use in geospatial workflows, modeling applications, and web data systems that integrate hydrologic data. The use cases addressed include: (1) hydrologic model control volume definition; (2) hydrologic network connectivity; (3) characterization of catchments with landscape and atmospheric data; (4) river corridor characterization; (5) hydrologic location; and (6) flow network location. Each use case is described briefly along with an analysis of the information requirements. This report presents a summary of the logical model designed to satisfy the needs of these use cases and a summary of updates and changes proposed for HY_Features. Changes for consideration by the HY_Features Standards Working Group include the following. Provide more clarity on the inherited properties and associations of features that "realize" the catchment and nexus concepts from HY_Features. Add nexus realization feature types to represent the outlet of catchments that are "frontal" (terminate to the ocean or a large waterbody) or "inland sinks." Add a "HY_Flowline" feature as a superclass of HY_Flowpath providing linear referencing on waterbodies that are not catchment realizations. Add an association or interface to support connection between surface catchments and hydrogeologic units.

OGC Public Engineering Report↗

USGS2009

Evaluation of LiDAR-Acquired Bathymetric and Topographic Data Accuracy in Various Hydrogeomorphic Settings in the Lower Boise River, Southwestern Idaho, 2007

Elevation data in riverine environments can be used in various applications for which different levels of accuracy are required. The Experimental Advanced Airborne Research LiDAR (Light Detection and Ranging) - or EAARL - system was used to obtain topographic and bathymetric data along the lower Boise River, southwestern Idaho, for use in hydraulic and habitat modeling. The EAARL data were post-processed into bare earth and bathymetric raster and point datasets. Concurrently with the EAARL data collection, real-time kinetic global positioning system and total station ground-survey data were collected in three areas within the lower Boise River basin to assess the accuracy of the EAARL elevation data in different hydrogeomorphic settings. The accuracies of the EAARL-derived elevation data, determined in open, flat terrain, to provide an optimal vertical comparison surface, had root mean square errors ranging from 0.082 to 0.138 m. Accuracies for bank, floodplain, and in-stream bathymetric data had root mean square errors ranging from 0.090 to 0.583 m. The greater root mean square errors for the latter data are the result of high levels of turbidity in the downstream ground-survey area, dense tree canopy, and horizontal location discrepancies between the EAARL and ground-survey data in steeply sloping areas such as riverbanks. The EAARL point to ground-survey comparisons produced results similar to those for the EAARL raster to ground-survey comparisons, indicating that the interpolation of the EAARL points to rasters did not introduce significant additional error. The mean percent error for the wetted cross-sectional areas of the two upstream ground-survey areas was 1 percent. The mean percent error increases to -18 percent if the downstream ground-survey area is included, reflecting the influence of turbidity in that area.

Scientific Investigations Report↗

USGS2022

Rocky Mountain Region Science Exchange 2020—EarthMAP and the Colorado River Basin

The U.S. Geological Survey (USGS) Rocky Mountain Region (RMR) hosted USGS scientists, managers, program coordinators, and leadership team members for a virtual Science Exchange during September 15–17, 2020. The Science Exchange had 216 registered participants and included 48 talks over the 3-day period. Invited speakers presented information about the novel USGS Earth Monitoring, Analysis, and Prediction (EarthMAP) concept. Scientists in the RMR and other regions showcased their research and participated in discussions related to the EarthMAP concept and EarthMAP applications. In addition, the Colorado River Basin Pilot Project, the first formal EarthMAP pilot project, was unveiled during the Science Exchange. Many of the products designed during the RMR Science Exchange were done so with the EarthMAP – Colorado River Basin Pilot Project in mind. This report summarizes the organization and objectives of the Science Exchange, highlights key points from session presentations, panel discussions, and breakout sessions, and, most importantly, discusses momentum generated for the EarthMAP – Colorado River Basin Pilot Project.

Colorado River Basin↗

USGS2011

Development of a bioenergetics model for age-0 American shad

Bioenergetics modeling can be used as a tool to investigate the impact of non-native age-0 American shad ( Alosa sapidissima ) on reservoir and estuary food webs. The model can increase our understanding of how these fish influence lower trophic levels as well as predatory fish populations that feed on juvenile salmonids. Bioenergetics modeling can be used to investigate ecological processes, evaluate alternative research hypotheses, provide decision support, and quantitative prediction. Bioenergetics modeling has proven to be extremely useful in fisheries research (Ney et al. 1993,Chips and Wahl 2008, Petersen et al. 2008). If growth and diet parameters are known, the bioenergetics model can be used to quantify the relative amount of zooplankton or insects consumed by age-0 American shad. When linked with spatial and temporal information on fish abundance, model output can guide inferential hypothesis development to demonstrate where the greatest impacts of age-0 American shad might occur. Bioenergetics modeling is particularly useful when research questions involve multiple species and trophic levels (e.g. plankton communities). Bioenergetics models are mass-balance equations where the energy acquired from food is partitioned between maintenance costs, waste products, and growth (Winberg 1956). Specifically, the Wisconsin bioenergetics model (Hanson et al. 1997) is widely used in fisheries science. Researchers have extensively tested, reviewed, and improved on this modeling approach for over 30 years (Petersen et al. 2008). Development of a bioenergetics model for any species requires three key components: 1) determine physiological parameters for the model through laboratory experiments or incorporate data from a closely related species, 2) corroboration of the model with growth and consumption estimates from independent research, and 3) error analysis of model parameters. Wisconsin bioenergetics models have been parameterized for many of the salmonids and predatory fishes encountered in the lower Columbia River (Petersen and Ward 1999). The Wisconsin bioenergetics model has not been developed for American shad, however Limburg (1996) parameterized a simplified bioenergetics growth model for this species. A common application for the Wisconsin bioenergetics model is to estimate the consumption or growth of a fish population under different temperature and feeding scenarios (Ney 1993). One advantage of the bioenergetics approach is that consumption can be estimated without direct field measurements of predation rate (prey·predator -1 · day -1 ; Petersen and Ward 1999). Field estimates of fish consumption are time consuming and costly to determine, and estimates may show wide variance due to environmental and sampling variability. However, the consumption parameters used in a newly developed bioenergetics model must be verified with field and laboratory estimates of consumption (Ney 1993). The objective of this research was to parameterize a Wisconsin bioenergetics model for age-0 American shad using published physiological data on American shad and closely related alosine species. The American shad bioenergetics model will be used as a tool to explore various hypotheses about how age-0 American shad directly and indirectly affect Columbia River salmon through ecological interactions in lower Columbia River food webs. One over-arching focus of the larger research project was to identify potential interactions between age-0 American shad and juvenile salmonids, addressing potential outcomes through bioenergetics modeling scenarios. This report contains two bioenergetics modeling applications to demonstrate how these models can be used to address management questions and direct research effort. The first modeling application uses the American shad bioenergetics model described in this report to explore prey consumption by age-0 American shad (Chapter 1, this report). Dietary data on age-0 American shad and previously published reports on the diet of juvenile fall Chinook salmon (Rondorf et al. 1990, USGS unpublished data) suggested there might be considerable dietary overlap between these species in the lower Columbia River. The U.S. Geological Survey (USGS) was interested in using the American shad bioenergetics model to explore hypotheses concerning dietary overlap between age-0 American shad and emigrating fall Chinook salmon. The second modeling application uses the fall Chinook salmon bioenergetics model (Koehler et al. 2006) to explore the growth potential of juvenile fall Chinook salmon predating on age-0 American shad in the lower Columbia River. This modeling was based dietary information on a small number of age-0 fall Chinook salmon (n = 13) collected in John Day Reservoir in 1994 - 1996 (unpublished USGS data). Analysis of this dietary data found that these salmonids were feeding primarily on age-0 American shad (> 75% by weight).

Oregon↗

USGS2023

Colorado River Basin Actionable and Strategic Integrated Science and Technology (ASIST)

Introduction The U.S. Geological Survey (USGS) is initiating a study approach focused on building cross-disciplinary connections to weave together the scientific knowledge related to drought conditions and effects in the Colorado River Basin. The basin is experiencing the worst drought in recorded history, posing unprecedented new challenges in the basin and in areas relying on water from the basin. Science is continually advancing, and there is an increasing need to interpret the connections between studies to predict the effects of drought and other changes affecting the Earth system. The USGS primarily works in independent disciplines and science centers to provide cutting-edge science to advance research and science applications worldwide. The complexity and volume of research that has been conducted related to drought in the Colorado River Basin is difficult to quantify. To complicate matters, studies, models, and datasets are cataloged and may be available in multiple, unrelated locations, across various internal systems, data repositories, and local offices. Furthermore, there are limited interactions and interfaces between scientists and partners working in different science disciplines; in many cases, individual science products require stakeholders to integrate complex interdisciplinary data across geographical and topical extents. The diverse array of interdisciplinary science and science products produced by the USGS highlights the need for a wide ranging collaborative support structure.

Arizona, California, Colorado, Nevada, New Mexico,↗

USGS2006

Assessing and Understanding Trail Degradation: Results from Big South Fork National River and Recreational Area

This report describes results from a comprehensive assessment of resource conditions on a large (24%) sample of the trail system within Big South Fork National River and Recreational Area (BSF). Components include research to develop state-of-knowledge trail impact assessment and monitoring methods, application of survey methods to BSF trails, analysis and summary of results, and recommendations for trail management decision making and future monitoring. Findings reveal a trail system with some substantial degradation, particularly soil erosion, which additionally threatens water quality in areas adjacent to streams and rivers. Factors that contribute to or influence these problems are analyzed and described. Principal among these are trail design factors (trail topographic position, soil texture, grade and slope alignment angle), use-related factors (type and amount of use), and maintenance factors (water drainage). Recommendations are offered to assist managers in improving the sustainability of the trails system to accommodate visitation while enhancing natural resource protection.

Report↗

USGS2018

A comparison of synthetic flowpaths derived from light detection and ranging topobathymetric data and National Hydrography Dataset High Resolution Flowlines

Bathymetric and topobathymetric light detection and ranging (lidar) digital elevation models created for the Delaware River were provided to the National Geospatial Program and used to evaluate synthetic flowpath extraction from bathymetric/topobathymetric lidar survey data as a data source for improving the density, distribution, and connectivity of the National Hydrography Dataset High Resolution Flowline Network. As the surface-water component of The National Map, the National Hydrography Dataset maintains the Nation’s drainage network flow information and geometries for surface-water features used in hydrologic, hydraulic, and other science and engineering disciplines. The regional lidar survey for the Delaware River between Hancock, New York, and Trenton, New Jersey, was collected for the U.S. Geological Survey using the Experimental Advanced Airborne Research Lidar sensor system and processed by the Coastal National Elevation Database Applications Program. Using 1 percent of the maximum flow accumulation value for the surveyed Delaware River corridor as the flow accumulation threshold for grid cells at 1-, 5-, and 10-meter resolution created 223 to 283 kilometers of synthetic flowpaths potentially representing the river channel thalweg, which is the deepest point in a riverbed cross-section. There was potential for improving the High Resolution National Hydrography Dataset (HR NHD) Flowline network in places where the Delaware River channel, depicted as an Artificial Path in the HR NHD, is offset from the extracted synthetic river flowpath which sometimes appeared better positioned than the Artificial Path to represent the river thalweg. For the same area, using 0.05 percent of the maximum flow accumulation at the 1-, 5-, and 10-meter resolutions extracted 744 to 1,317 kilometers of synthetic flowpaths, with extracted synthetic flowpaths representing the main river channel and additional synthetic flowpaths representing tributaries or streams adjacent to the main channel. Overlaying these results with the HR NHDFlowline Network indicates that some of the additional synthetic flowpaths are connected to or extend HR NHD stream/river feature types. Some disconnected or isolated synthetic flowpaths not included in stream/river feature types were validated in orthoimagery and U.S. Topo Maps and provide examples of how extracted synthetic flowpaths could be used to delineate new stream/river features. Other additional extracted synthetic flowpaths depict linear features such as canals, tree lines, roads, or linear topographic depressions. For some river reaches where obstructions to flow or where low-relief topographic or bathymetric surfaces alter the flow direction, the software tool used to develop the flow direction grid did not calculate a primary flowpath for the river channel. Based on the results of this analysis, site conditions for the Delaware River corridor did not affect the quality of lidar bathymetric survey data. However, depending on the resolution of the lidar bathymetric digital elevation models (BDEMs), site conditions do have different effects on results for extracted synthetic flowpaths. We found that synthetic flowpaths extracted from 1-meter resolution lidar DEMs had more varied flow directions around in-channel landforms that obstructed flow than synthetic flowpaths extracted from 5- or 10-meter resolution lidar DEMs. As a result the 1-meter resolution DEM created some isolated or discontinuous synthetic flowpath segments where the 5- and 10-meter DEMs developed more continuous flowpaths. In this case the river bed upstream from the in-channel obstruction is shallower than the river bed downstream. Under these conditions the 1-meter resolution DEM provided synthetic flowpaths delineating a potential river thalweg. In this same area, the software solution modified (virtually raised) the river bed in the 5- and 10-meter resolution DEMs and flattened the bathymetric surface to create a continuous downstream flow direction, which caused trellis-patterned synthetic flowpaths to form. Under different site conditions and converse to the above development of synthetic flowpaths at different resolutions, at an abandoned river flood plain (terrace) with low relief that is adjacent to the river channel, the flow direction grid for the 1-meter resolution DEM developed continuous synthetic flowpath corresponding to a HR NHD Flowline network stream/river feature that connected to the main river channel but the larger resolution DEMs created isolated or disconnected synthetic flowpaths. A project to continue an evaluation of benefits of or issues caused by extracting synthetic flowpaths to enhance the HR NHD could include a study to assess the potential for merging surface-water flowpaths extracted from lidar topobathymetry and 3D Elevation Program digital elevation models. The merged DEM approach to synthetic flowpath extraction could extend the HR NHDFlowline network and enhance flow accumulations that might develop better flow direction grids in low-relief areas. Because of the confined lateral extent of the Delaware River, the lidar DEMs were not used to create catchments or watersheds; however, the merged DEM approach could also be tested as a resource for enhancing HR NHD catchments and watersheds. This lidar DEM synthetic flowpath extraction project supports the National Geospatial Program efforts to collect and produce high-quality lidar data to provide 3-dimensional representations of natural feature and aligns with the National Spatial Data Infrastructure to improve utilization of geospatial data. The results also can be useful for understanding strategies that can help maintain quality data in the HR NHD programs. KEYWORDS: bathymetric, digital elevation model, extracted synthetic flowpath, lidar, High Resolution National Hydrography Dataset, topobathymetric

New Jersey↗

USGS2011

Evaluation of LiDAR-acquired bathymetric and topographic data accuracy in various hydrogeomorphic settings in the Deadwood and South Fork Boise Rivers, West-Central Idaho, 2007

High-quality elevation data in riverine environments are important for fisheries management applications and the accuracy of such data needs to be determined for its proper application. The Experimental Advanced Airborne Research LiDAR (Light Detection and Ranging)-or EAARL-system was used to obtain topographic and bathymetric data along the Deadwood and South Fork Boise Rivers in west-central Idaho. The EAARL data were post-processed into bare earth and bathymetric raster and point datasets. Concurrently with the EAARL surveys, real-time kinematic global positioning system surveys were made in three areas along each of the rivers to assess the accuracy of the EAARL elevation data in different hydrogeomorphic settings. The accuracies of the EAARL-derived raster elevation values, determined in open, flat terrain, to provide an optimal vertical comparison surface, had root mean square errors ranging from 0.134 to 0.347 m. Accuracies in the elevation values for the stream hydrogeomorphic settings had root mean square errors ranging from 0.251 to 0.782 m. The greater root mean square errors for the latter data are the result of complex hydrogeomorphic environments within the streams, such as submerged aquatic macrophytes and air bubble entrainment; and those along the banks, such as boulders, woody debris, and steep slopes. These complex environments reduce the accuracy of EAARL bathymetric and topographic measurements. Steep banks emphasize the horizontal location discrepancies between the EAARL and ground-survey data and may not be good representations of vertical accuracy. The EAARL point to ground-survey comparisons produced results with slightly higher but similar root mean square errors than those for the EAARL raster to ground-survey comparisons, emphasizing the minimized horizontal offset by using interpolated values from the raster dataset at the exact location of the ground-survey point as opposed to an actual EAARL point within a 1-meter distance. The average error for the wetted stream channel surface areas was -0.5 percent, while the average error for the wetted stream channel volume was -8.3 percent. The volume of the wetted river channel was underestimated by an average of 31 percent in half of the survey areas, and overestimated by an average of 14 percent in the remainder of the survey areas. The EAARL system is an efficient way to obtain topographic and bathymetric data in large areas of remote terrain. The elevation accuracy of the EAARL system varies throughout the area depending upon the hydrogeomorphic setting, preventing the use of a single accuracy value to describe the EAARL system. The elevation accuracy variations should be kept in mind when using the data, such as for hydraulic modeling or aquatic habitat assessments.

Idaho↗

USGS2024

Integrating depth measurements from gaging stations with image archives for spectrally based remote sensing of river bathymetry

Remote sensing can be an effective tool for mapping river bathymetry, but the need for direct measurements to calibrate image-derived depth estimates impedes broader application of this approach. One way to circumvent the need for field campaigns dedicated to calibration is to capitalize upon existing data. In this study, we introduce a framework for Bathymetric Mapping using Gage Records and Image Databases (BaMGRID). This workflow involves retrieving depth measurements made during gaging station site visits, downloading archived multispectral images, and then combining these two data sets to establish a relationship between depth and reflectance. We developed a processing chain that involves using application programming interfaces to obtain both depth measurements made during site visits and images centered on the gage and then linking depth to reflectance via an optimal band ratio analysis (OBRA) algorithm modified for small sample sizes. Applying this workflow to selected gages within two river basins indicated that depth retrieval from multispectral satellite images could be highly accurate, but with variable results from one image to the next at a given site. High resolution aerial photography was less conducive to bathymetric mapping in one of the basin considered. Of the four predictors of depth retrieval performance we evaluated (mean and standard deviation of depth, width, and an index of water clarity), only width was consistently significantly correlated with OBRA R 2 ( p < 0.026). Currently, BaMGRID is best-suited for site-by-site analysis to support practical applications at the reach scale; continuous, basin-wide mapping of river bathymetry will require additional research.

Willamette River basin, Delaware River basin↗

USGS2021

Prototyping a methodology for long-term (1680-2100) historical-to-future landscape modeling for the conterminous United States

Land system change has been identified as one of four major Earth system processes where change has passed a destabilizing threshold. A historical record of landscape change is required to understand the impacts change has had on human and natural systems, while scenarios of future landscape change are required to facilitate planning and mitigation efforts. A methodology for modeling long-term historical and future landscape change was applied in the Delaware River Basin of the United States. A parcel-based modeling framework was used to reconstruct historical landscapes back to 1680, parameterized with a variety of spatial and nonspatial historical datasets. Similarly, scenarios of future landscape change were modeled for multiple scenarios out to 2100. Results demonstrate the ability to represent historical land cover proportions and general patterns at broad spatial scales and model multiple potential future landscape trajectories. The resulting land cover collection provides consistent data from 1680 through 2100, at a 30-m spatial resolution, 10-year intervals, and high thematic resolution. The data are consistent with the spatial and thematic characteristics of widely used national-scale land cover datasets, facilitating use within existing land management and research workflows. The methodology demonstrated in the Delaware River Basin is extensible and scalable, with potential applications at national scales for the United States.

Delaware, Maryland, New Jersey, New York, Pennsylv↗

USGS2025

Four-band image mosaic of the Colorado River Corridor downstream of Glen Canyon Dam in Arizona, derived from the May 2021 airborne image acquisition

In May 2021, the U.S. Geological Survey’s Grand Canyon Monitoring and Research Center acquired airborne multispectral high-resolution data for the Colorado River in the Grand Canyon, Arizona. The image data, which consist of four spectral bands (red, band 1; green, band 2; blue, band 3; and near infrared, band 4) with a ground resolution of 20 centimeters, are available as 16-bit unsigned-integer GeoTIFF files in Sankey and others (2024) (available online at https://doi.org/10.5066/P9BBGN6G ). The image files are projected in the State Plane Coordinate System, using the central Arizona zone (202) with the North American Datum of 1983 National Adjustment of 2011. The assessed spatial accuracy for these data is based on 47 ground-control points that were independent from the ground-control points used by the contractor for aerotriangulation and is reported at the 95-percent confidence level as 0.514 meter (m) and a root mean square error of 0.297 m. The intended uses of this dataset are primarily in support of scientific research and monitoring applications. Examples of these applications include high-resolution spatial and temporal change detection of the river channel, geomorphic landforms, riparian vegetation, and backwater and nearshore habitat, as well as other ecosystem-wide mapping. These imagery data also serve as reference material for field science mission planning, as base data for field data collection including community science activities, and as a highly detailed guide for technical boat operation during science activities such as reconnaissance for nighttime missions and navigating rapids during low flows.

Arizona, Nevada, Utah↗

USGS2017

Engaging the user community for advancing societal applications of the Surface Water Ocean Topography mission

Scheduled for launch in 2021, the Surface Water and Ocean Topography (SWOT) mission will be a truly unique mission that will provide high-temporal-frequency maps of surface water extents and elevation variations of global water bodies (lakes/reservoirs, rivers, estuaries, oceans, and sea ice) at higher spatial resolution than is available with current technologies (Biancamaria et al. 2016; Alsdorf et al. 2007). The primary instrument on SWOT is based on a Ka-band radar interferometer (KaRIN), which uses radar interferometery technology. The satellite will fly two radar antennas at either end of a 10-m (33 ft) mast, allowing it to measure the elevation of the surface along a 120-km (75 mi)-wide swath below. The availability of high-frequency and high-resolution maps of elevations and extents for surface water bodies and oceans will present unique opportunities to address numerous societally relevant challenges around the globe (Srinivasan et al. 2015). These opportunities may include such diverse and far-ranging applications as fisheries management, flood inundation mapping/risk mitigation/forecasting, wildlife conservation, global data assimilation for improving forecast of ocean tides and weather, reservoir management, climate change impacts and adaptation, and river discharge estimation, among others. Although SWOT is a research mission and not scheduled for launch for another 4 years, there is a need to build engagement within the application community now and to explore how best to advance the societal relevance and benefits of the SWOT mission from concept to reality. The SWOT Applications Working Group organized a workshop on 5–6 April 2017 at the U.S. Geological Survey (USGS) headquarters in Reston, Virginia. The goal of the workshop was to understand and communicate how the applications community can use SWOT data to address problems of profound societal relevance.

Bulletin of the American Meteorological Society↗

USGS2022

Presented abstracts from the U.S. Geological Survey 2020 Rocky Mountain Region Science Exchange (September 15–17, 2020)

The U.S. Geological Survey Rocky Mountain Region hosted scientists, managers, program coordinators, and leadership team members for a virtual Science Exchange during September 15–17, 2020. The Science Exchange had 216 registered participants and included 48 talks over the 3-day period. Invited speakers presented information about the novel U.S. Geological Survey Earth Monitoring, Analysis, and Prediction (EarthMAP) concept. Scientists showcased their research and participated in discussions related to the EarthMAP concept and EarthMAP applications. In addition, the Colorado River Basin Pilot Project, one of the first EarthMAP Pilot Projects, was unveiled during the Science Exchange. This report provides synopses of session objectives and corresponding abstracts that were presented along with author affiliations and email address of the lead author. In addition, web links are provided for related programs and projects, and associated publications are referenced.

Open-File Report↗

USGS2005

Literature review for Texas Department of Transportation Research Project 0-4695: Guidance for design in areas of extreme bed-load mobility, Edwards Plateau, Texas

A review of the literature addressing sediment transport in gravel-bed river systems and structures designed to control bed-load mobility is provided as part of Texas Department of Transportation research project 0–4695: Guidance for Design in Areas of Extreme Bed-Load Mobility. The study area comprises the western half of the Edwards Plateau in central Texas. Three primary foci of the literature review are journal articles, edited volumes, and government publications. Major themes within the body of literature include deterministic sediment transport theory and equations, development of methods to measure and analyze fluvial sediment, applications and development of theory in natural channels and flume experiments, and recommendations for river management and structural design. The literature review provides an outline and foundation for the research project to characterize extreme bed-load mobility in rivers and streams across the study area. The literature review also provides a basis upon which potential modifications to low-water stream-crossing design in the study area can be made.

Open-File Report↗

USGS2015

Applications of optical sensors for high-frequency water-quality monitoring and research

The recent commercial availability of in-situ optical sensors, together with new techniques for data collection and analysis, provides the opportunity to monitor a wide range of water-quality constituents over time scales during which environmental conditions actually change. Traditional approaches for data collection (daily to monthly discrete samples) are often limited by high sample collection, processing, and analytical costs, difficult site access, and logistical challenges, particularly for long-term sampling at a large number of sites. Optical sensors that continuously measure constituents in the environment by absorbance or fluorescence properties (Figure 1) have had a long history of use in oceanography for measuring highly resolved concentrations and fluxes of organic matter, nutrients, and algal material. However, much of the work using commercially-available optical sensors in rivers and streams has taken place in only the last few years. Figure 1. [NOT SHOWN] Optical sensor technology is now sufficiently developed to warrant broader application for research and monitoring in coastal and freshwater systems, and the United States Geological Survey (a U.S. science agency) is now using these sensors in a variety of research and monitoring programs to better understand water quality in-situ and in real-time. Examples are numerous and range from the applications of nitrate sensors for calculating loads to estuaries susceptible to hypoxia (Pellerin et al., 2014) to the use of fluorometers to estimate methymercury fluxes (Bergamaschi et al., 2011) and disinfection byproduct formation (Carpenter et al., 2013). Transmitting these data in real-time provides information that can be used for early trend detection, help identify monitoring gaps critical for water management, and provide science-based decision support across a range of issues related to water quality, freshwater ecosystems, and human health. Despite the value of these sensors, collecting data that meet high-quality standards requires investment in and adherence to tested and established methods and protocols for sensor operation and data management (Pellerin et al., 2013). For example, optical sensor measurements can be strongly influenced by a variety of matrix effects, including water temperature, inner filtering from highly colored water, and scattering of light by suspended particles (Downing et al., 2012). Characterizing and correcting sensors for these effects – as well as the continued development of common methodologies and protocols for sensor use – will be critical to ensuring comparable measurements across sites and over time. In addition, collaborative efforts such as the Nutrient Sensor Challenge (www.nutrients-challenge.org) will continue to accelerate the development, production and use of affordable, reliable and accurate sensors for a range of environments. REFERENCES Bergamaschi .B.A., Fleck J.A., Downing B.D., Boss E., Pellerin B.A., Ganju N.K., Schoellhamer D.H., Byington A.A., Heim W.A., Stephenson M., Fujii R. (2011), Methyl mercury dynamics in a tidal wetland quantified using in situ optical measurements. Limnology and Oceanography, 56(4): 1355-1371. Carpenter K.D., Kraus T.E.C., Goldman J.H., Saraceno J., Downing B.D., Bergamaschi B.A., McGhee G., Triplett T. (2013), Sources and Characteristics of Organic Matter in the Clackamas River, Oregon, Related to the Formation of Disinfection By-products in Treated Drinking Water: U.S. Geological Survey Scientific Investigations Report 2013–5001, 78 p. Downing .B.D., Pellerin B.A., Bergamaschi B.A., Saraceno J., Kraus T.E.K. (2012), Seeing the light: The effects of particles, temperature and inner filtering on in situ CDOM fluorescence in rivers and streams. Limnology and Oceanography: Methods, 10: 767-775. Pellerin B.A., Bergamaschi B.A., Downing B.D., Saraceno J., Garrett J.D., Olsen L.D. (2013), Optical Techniques for the Determination of Nitrate in En

Conference Paper↗