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Moderate-resolution sea surface temperature data for the nearshore North Pacific

Coastal sea surface temperature (SST) is an important environmental characteristic in determining the suitability of habitat for nearshore marine and estuarine organisms. This publication describes and provides access to an easy-to-use coastal SST dataset for ecologists, biogeographers, oceanographers, and other scientists conducting research on nearshore marine habitats or processes. The data cover the Temperate Northern Pacific Ocean as defined by the 'Marine Ecosystems of the World' (MEOW) biogeographic schema developed by The Nature Conservancy. The spatial resolution of the SST data is 4-km grid cells within 20 km of the shore. The data span a 29-year period - from September 1981 to December 2009. These SST data were derived from Advanced Very High Resolution Radiometer (AVHRR) instrument measurements compiled into monthly means as part of the Pathfinder versions 5.0 and 5.1 (PFSST V50 and V51) Project. The processing methods used to transform the data from their native Hierarchical Data Format Scientific Data Set (HDF SDS) to georeferenced, spatial datasets capable of being read into geographic information systems (GIS) software are explained. In addition, links are provided to examples of scripts involved in the data processing steps. The scripts were written in the Python programming language, which is supported by ESRI's ArcGIS version 9 or later. The processed data files are also provided in text (.csv) and Access 2003 Database (.mdb) formats. All data except the raster files include attributes identifying realm, province, and ecoregion as defined by the MEOW classification schema.

Open-File Report

Shaded seafloor relief, backscatter strength, and surficial geology; German Bank, Scotian Shelf, offshore Nova Scotia

This map is part of a three-map series of German Bank, located on the Scotian Shelf off southern Nova Scotia. This map is the product of a number of surveys (1997-2003) that used a multibeam sonar system to map 5321 km 2 of the seafloor. Other surveys collected geological data for scientific interpretation. This map sheet shows the seafloor topography of German Bank in shaded-relief view and seafloor depth (coded by colour) at a scale of 1:1000,000. Topographic contours generated from the multibeam data are shown (in white) on the colour-coded multibeam topography at a depth interval of 20 m. Bathymetic contours (in blue) outside the multibeam survey area, presented at a depth interval of 10 m, are from the Natural Resource Map series (Canadian Hydrographic Service, 1967, 1971a, 1971b, 1972). Sheet 2 shows coloured backscatter strength in shaded-relief view. Sheet 3 shows seafloor topography in shaded-relief view with colour-coded surficial geological units.

Nova Scotia

Transmissivity and geophysical data for selected wells at and near the Idaho National Laboratory, Idaho, 2017–18

The U.S. Geological Survey, in cooperation with the U.S. Department of Energy, conducted aquifer tests during 2017–18 on 101 wells at and near the Idaho National Laboratory, Idaho, to define the hydraulic characteristics for individual wells. These were short-duration aquifer tests, conducted with a limited number of observations during routine sampling. Pumped intervals (water columns) for individual wells ranged from 12 to 790 feet (ft). Semi-constant discharge rates during aquifer testing ranged from 1 to 45 gallons per minute, water-level response to pumping ranged from no observed drawdown to 52.4 ft, and length of aquifer tests for individual wells ranged from 10 to 160 minutes. Individual well data were analyzed to estimate the capacity of the well to produce water (specific capacity) and to estimate values for transmissivity. Estimates of specific capacity for individual wells ranged from less than 1.0 to greater than (>) 3.0 × 10 3 gallons per minute per foot; estimates of transmissivity for individual wells ranged from 2.0 to >5.4 x 10 5 feet squared per day. Geophysical log data, well construction information, and general geology for individual wells were presented and included in this report. Basic hydrogeologic features for individual wells were described, along with a composite of natural gamma, neutron, gamma-gamma dual density, and acoustic televiewer data (when available). The geophysical and geologic data were used to suggest the location and thickness of sediment layers along with fractured and dense basalt areas for individual wells. Geophysical data were used to describe the general geology where geologic descriptions and (or) driller notes were not available.

Idaho

ShakeMap manual: technical manual, user's guide, and software guide

ShakeMap (http://earthquake.usgs.gov/shakemap) --rapidly, automatically generated shaking and intensity maps--combines instrumental measurements of shaking with information about local geology and earthquake location and magnitude to estimate shaking variations throughout a geographic area. The results are rapidly available via the Web through a variety of map formats, including Geographic Information System (GIS) coverages. These maps have become a valuable tool for emergency response, public information, loss estimation, earthquake planning, and post-earthquake engineering and scientific analyses. With the adoption of ShakeMap as a standard tool for a wide array of users and uses came an impressive demand for up-to-date technical documentation and more general guidelines for users and software developers. This manual is meant to address this need. ShakeMap, and associated Web and data products, are rapidly evolving as new advances in communications, earthquake science, and user needs drive improvements. As such, this documentation is organic in nature. We will make every effort to keep it current, but undoubtedly necessary changes in operational systems take precedence over producing and making documentation publishable.

Techniques and Methods

Guidelines for monitoring and adaptively managing restoration of Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ) on the Elwha River

As of January, 2014, the removal of the Elwha and Glines Canyon dams on the Elwha River, Washington, represents the largest dam decommissioning to date in the United States. Dam removal is the single largest step in meeting the goals of the Elwha River Ecosystem and Fisheries Restoration Act of 1992 (The Elwha Act) — full restoration of the Elwha River ecosystem and its native anadromous fisheries (Section 3(a)). However, there is uncertainty about project outcomes with regards to salmon populations, as well as what the ‘best’ management strategy is to fully restore each salmon stock. This uncertainty is due to the magnitude of the action, the large volumes of sediment expected to be released during dam removal, and the duration of the sediment impact period following dam removal. Our task is further complicated by the depleted state of the native salmonid populations remaining in the Elwha, including four federally listed species. This situation lends itself to a monitoring and adaptive management approach to resource management, which allows for flexibility in decision-making processes in the face of uncertain outcomes. The Elwha Monitoring and Adaptive Management (EMAM) guidelines presented in this document provide a framework for developing goals that define project success and for monitoring project implementation and responses, focused upon two federally listed salmon species — Puget Sound Chinook salmon (Oncorhynchus tshawytscha) and Puget Sound steelhead (O. mykiss). The framework also should serve as a guide to help managers adaptively manage fish restoration actions during and following dam removal. The document is organized into seven sections, including an introduction (Section 1), a description of the adaptive management approach (Section 2), suggested modifications to the existing restoration strategy developed in previous Elwha River restoration documents (section 3), specific descriptions of an adaptive management framework, including establishment of goals, performance indicators, and potential adaptive management responses to monitoring information (section 4), monitoring tools and methods for use in evaluating performance and project outcomes (section 5), and brief sections on data record keeping and reporting (Section 6) and an estimated budget (section 7). The purpose of the EMAM guidelines is to propose (1) refinement of existing goals established in previous documents (e.g., Ward et al. (2008), U.S. Department of the Interior, Department of Commerce, and Lower Elwha S’Klallam Tribe (1994)); (2) an adaptive management framework, (3) specific trigger values for relevant performance indicators that guide the adaptive management approach, (4) a specific monitoring strategy for evaluating outcomes of restoration activities; (5) a data management strategy, (6) information needed for adjusting goals when observations indicate conditions are different from anticipated. When taken together, our proposed adaptive management guidelines rely upon setting goals and objectives for each species of interest, which are monitored by relevant performance indicators and measurable trigger values that define success within each phase of the project. The guidelines themselves are arranged in a hierarchy for each species of interest. The levels of this hierarchy are goals, objectives, performance indicators, decision rules, triggers, and decisions (i.e., management/policy response). The monitoring and adaptive management approach provided is based on monitoring several categories of performance indicators, each containing associated ‘trigger’ values which, when met, alters restoration activities (e.g., hatchery releases and/or strategies) through four successive restoration phases. Performance indicators proposed in these EMAM guidelines are based upon Viable Salmon Population (VSP) metrics, including abundance, productivity, distribution, and diversity (McElhany et al. 2000). Trigger values for each performance indicator are developed for four different restoration phases: Preservation, Recolonization, Local Adaptation, and Viable Natural Population. These biologically-based phases each have a set of objectives that are based on resource management scenarios, including the dam removal project itself, which change largely based on the level of active management required and the degree, if any, of resource utilization. Thus, details of prescribed management actions for each phase are based upon different needs specific to that phase. The creation of biologically-based phases is one of the major differences between our proposed EMAM guidelines and previously presented plans for Elwha River Restoration Project management. Changed largely in response to the recommendations of the most recent of three Hatchery Scientific Review Group project reviews (HSRG 2012), the goal-oriented phases replaced the previous system of temporal changes centered around the decommissioning of the dams (i.e., before, during, and after dam removal). By focusing on outcomes associated with rebuilding salmon populations instead of an engineering schedule, the guidelines are more amenable to an adaptive management framework and the ability for management actions to influence outcomes, particularly in the periods during and following dam removal. Trigger values for each performance indicator were generally developed using existing data from the Elwha River watershed, the Puget Sound region, or other Pacific Northwest rivers (i.e., elsewhere in Washington State, Oregon, British Columbia) modified to be relevant for Chinook salmon and steelhead recovery in the Elwha River. By meeting all of the trigger value levels for all performance indicators for a set amount of time within a management phase, the guidelines call for moving to the next phase. This next phase has a new set of trigger values for the same performance indicators. For example, upon moving from the Preservation phase to the Recolonization phase, the trigger value for intrinsic potential increases. Intrinsic potential is a pre-defined estimate of the total extent of available habitat within a watershed for adult and juvenile fish, specific to the target species and is therefore a performance indicator of spatial distribution. By the final Viable Natural Population phase, the entire intrinsic potential of the watershed is being occupied by the species of interest. For those cases when a performance indicator is not exceeding the target value for a particular phase after a certain time period, the trigger values provided in this document, as well as a series of exogenous variables, are explored that may help explain why the performance indicator is not being met. These exogenous variables include variables that are not part of the suite of performance indicators, such as hatchery production, harvest, habitat, and ecosystem indicators. In these cases where the program is stuck in a particular recovery phase, the situation could be caused by the selection of inappropriate trigger values or unforeseen environmental conditions. If the former, adaptive management would call for existing monitoring data to be used for modifying trigger values to an appropriate level. If one of the exogenous variables is found to be preventing the program moving to the next phase, then appropriate changes to management would be advised. For each performance indicator and many of the exogenous variables, a set of monitoring tools were proposed. Data standards were also proposed for data generated by each monitoring tool. Data management, record keeping, and reporting of monitoring and adaptive management activities and results are also outlined. Management of data from the focused monitoring program and documenting the outcomes of trigger value evaluations and associated decisions from the adaptive management approach are key components of the EMAM guidelines. Without a clear history of data generated and adaptive management decisions taken by managers, the ability to learn through adaptive management breaks down. In addition to the long time period involved, another complication is the fact that the data will likely be collected by different federal and state agencies, tribal staff, and others. Having a system of reporting developed should help alleviate potential problems. The restoration of the migration route to spawning and rearing habitats upstream of the former Glines Canyon Dam represents a great opportunity for salmon on the Olympic Peninsula. By removing two aging structures, it will be possible for all 5 species of salmon and steelhead to return to wild stretches of the Elwha River and major floodplain habitat characterized by multiple channels, as well as significant portions of numerous tributaries. Measuring the progress of restoration, from the perspective of both salmon populations and the ecosystem upon which they depend, is a great test for a collaborative team of scientists. The normally challenging conditions of working in a steep gradient, high velocity wilderness river are exacerbated by the release of millions of cubic yards of sediment that had accumulated in the reservoirs. After the first two years of the dam decommissioning process, this release has changed the ecology of the river, estuary, and nearshore habitats downstream of the dams. Our goal in developing the guidelines described is to provide a roadmap for tracking what hopefully will become a successful outcome. If successfully implemented, this information should prove useful as others begin planning for the removal, alteration, or reconstruction of dams throughout North America and elsewhere, an inevitable outcome of an aging dam infrastructure.

Washington

Field observations and long short-term memory modeling of spectral wave evolution at living shorelines in Chesapeake Bay, USA

Living shorelines as a nature-based solution for climate change adaptation were constructed in many places around the world. The success of this type of projects requires long-term monitoring for adaptive management. The paper presents a novel framework leveraging scientific machine learning methods for accurate and rapid prediction of long-term hydrodynamic forcing impacting living shorelines using short-term measurements of water levels and wind waves in the largest estuary in the U.S. Different from existing data-driven wave prediction models focusing on significant wave heights, this study is focused on the prediction of wave energy spectra in shallow water using winds and tides as the input feature and short-term measurements of wave spectra and water depths as the label. Long Short-Term Memory (LSTM) models were developed using four-month wave measurements in the stormy seasons to predict integral wave parameters and energy spectra for multiple years. The developed models accurately predicted wave heights, peak periods, and energy spectra around the living shorelines, capturing complex wave dynamics, such as wave generation by wind, nonlinear wave-wave interactions, and depth-limited wave breaking in the shallow water of a large estuary. The validated models were then used to determine the long-term wave forcing impacting the living shorelines based on the modeled wave characteristics and spectra. Model results show that the surrogate models utilizing LSTM to predict wave spectra in the frequency domain enable long-term predictions of spectral wave evolution with a minimal computational cost. Our findings provide valuable insights into the efficacy of living shorelines in attenuating wave energy and demonstrate the utility of this approach in assessing the effectiveness of such living shoreline structures.

Applied Ocean Research

Status of the world's remaining closed forests: An assessment using satellite data and policy options

Historically, it appears that some of the WRCF have survived because i) they lack sufficient quantity of commercially valuable species; ii) they are located in remote or inaccessible areas; or iii) they have been protected as national parks and sanctuaries. Forests will be protected when people who are deciding the fate of forests conclude than the conservation of forests is more beneficial, e.g. generates higher incomes or has cultural or social values, than their clearance. If this is not the case, forests will continue to be cleared and converted. In the future, the WRCF may be protected only by focused attention. The future policy options may include strategies for strong protection measures, the raising of public awareness about the value of forests, and concerted actions for reducing pressure on forest lands by providing alternatives to forest exploitation to meet the growing demands of forest products. Many areas with low population densities offer an opportunity for conservation if appropriate steps are taken now by the national governments and international community. This opportunity must be founded upon the increased public and government awareness that forests have vast importance to the welfare of humans and ecosystems' services such as biodiversity, watershed protection, and carbon balance. Also paramount to this opportunity is the increased scientific understanding of forest dynamics and technical capability to install global observation and assessment systems. High-resolution satellite data such as Landsat 7 and other technologically advanced satellite programs will provide unprecedented monitoring options for governing authorities. Technological innovation can contribute to the way forests are protected. The use of satellite imagery for regular monitoring and Internet for information dissemination provide effective tools for raising worldwide awareness about the significance of forests and intrinsic value of nature.

Ambio

Acceleration and volumetric strain generated by the Parkfield 2004 earthquake on the GEOS strong-motion array near Parkfield, CA

An integrated array of 11 General Earthquake Observation System (GEOS) stations installed near Parkfield, CA provided on scale broad-band, wide-dynamic measurements of acceleration and volumetric strain of the Parkfield earthquake (M 6.0) of September 28, 2004. Three component measurements of acceleration were obtained at each of the stations. Measurements of collocated acceleration and volumetric strain were obtained at four of the stations. Measurements of velocity at most sites were on scale only for the initial P-wave arrival. When considered in the context of the extensive set of strong-motion recordings obtained on more than 40 analog stations by the California Strong-Motion Instrumentation Program (Shakal, et al., 2004 http://www.quake.ca.gov/cisn-edc) and those on the dense array of Spudich, et al, (1988), these recordings provide an unprecedented document of the nature of the near source strong motion generated by a M 6.0 earthquake. The data set reported herein provides the most extensive set of near field broad band wide dynamic range measurements of acceleration and volumetric strain for an earthquake as large as M 6 of which the authors are aware. As a result considerable interest has been expressed in these data. This report is intended to describe the data and facilitate its use to resolve a number of scientific and engineering questions concerning earthquake rupture processes and resultant near field motions and strains. This report provides a description of the array, its scientific objectives and the strong-motion recordings obtained of the main shock. The report provides copies of the uncorrected and corrected data. Copies of the inferred velocities, displacements, and Psuedo velocity response spectra are provided. Digital versions of these recordings are accessible with information available through the internet at several locations: the National Strong-Motion Program web site (http://agram.wr.usgs.gov/), the COSMOS Virtual Data Center Web site (http://www.cosmos-eq.org), and the CISN Engineering and Berkeley data centers (http://www.quake.ca.gov/cisn-edc). They are also accessible together with recordings on the GEOS Strong-motion Array near Parkfield, CA since its installation in 1987 through the USGS GEOS web site ( http://nsmp.wr.usgs.gov/GEOS).

California

California State Waters Map Series — Offshore of Point Reyes, California

This publication about the Offshore of Point Reyes map area includes ten map sheets that contain explanatory text, in addition to this descriptive pamphlet and a data catalog of geographic information system (GIS) files. Sheets 1, 2, and 3 combine data from four different sonar surveys to generate comprehensive high-resolution bathymetry and acoustic-backscatter coverage of the map area. These data reveal a range of physiographic features (highlighted in the perspective views on sheet 4) such as the flat, sediment-covered seafloor in Drakes Bay, as well as abundant “scour depressions” on the Bodega Head–Tomales Point shelf (see sheet 9) and local, tectonically controlled bedrock uplifts. To validate geological and biological interpretations of the sonar data shown in sheets 1, 2, and 3, the U.S. Geological Survey towed a camera sled over specific offshore locations, collecting both video and photographic imagery; these “ground-truth” surveying data are summarized on sheet 6. Sheet 5 is a “seafloor character” map, which classifies the seafloor on the basis of depth, slope, rugosity (ruggedness), and backscatter intensity and which is further informed by the ground-truth-survey imagery. Sheet 7 is a map of “potential habitats,” which are delineated on the basis of substrate type, geomorphology, seafloor process, or other attributes that may provide a habitat for a specific species or assemblage of organisms. Sheet 8 compiles representative seismic-reflection profiles from the map area, providing information on the subsurface stratigraphy and structure of the map area. Sheet 9 shows the distribution and thickness of young sediment (deposited over the last about 21,000 years, during the most recent sea-level rise) in both the map area and the larger Salt Point to Drakes Bay region, interpreted on the basis of the seismic-reflection data, and it identifies the Offshore of Point Reyes map area as lying within the Bodega Head–Tomales Point shelf, Point Reyes bar, and Bolinas shelf domains. Sheet 10 is a geologic map that merges onshore geologic mapping (compiled from existing maps by the California Geological Survey) and new offshore geologic mapping that is based on integration of high-resolution bathymetry and backscatter imagery (sheets 1, 2, 3), seafloor-sediment and rock samples (Reid and others, 2006), digital camera and video imagery (sheet 6), and high-resolution seismic-reflection profiles (sheet 8), as well as aerial-photographic interpretation of nearshore areas. The information provided by the map sheets, pamphlet, and data catalog have a broad range of applications. High-resolution bathymetry, acoustic backscatter, ground-truth-surveying imagery, and habitat mapping all contribute to habitat characterization and ecosystem-based management by providing essential data for delineation of marine protected areas and ecosystem restoration. Many of the maps provide high-resolution baselines that will be critical for monitoring environmental change associated with climate change, coastal development, or other forcings. High-resolution bathymetry is a critical component for modeling coastal flooding caused by storms and tsunamis, as well as inundation associated with longer term sea-level rise. Seismic-reflection and bathymetric data help characterize earthquake and tsunami sources, critical for natural-hazard assessments of coastal zones. Information on sediment distribution and thickness is essential to the understanding of local and regional sediment transport, as well as the development of regional sediment-management plans. In addition, siting of any new offshore infrastructure (for example, pipelines, cables, or renewable-energy facilities) will depend on high-resolution mapping. Finally, this mapping will both stimulate and enable new scientific research and also raise public awareness of, and education about, coastal environments and issues.

California

Statistical Stationarity of Sediment Interbed Thicknesses in a Basalt Aquifer, Idaho National Laboratory, Eastern Snake River Plain, Idaho

The statistical stationarity of distributions of sedimentary interbed thicknesses within the southwestern part of the Idaho National Laboratory (INL) was evaluated within the stratigraphic framework of Quaternary sediments and basalts at the INL site, eastern Snake River Plain, Idaho. The thicknesses of 122 sedimentary interbeds observed in 11 coreholes were documented from lithologic logs and independently inferred from natural-gamma logs. Lithologic information was grouped into composite time-stratigraphic units based on correlations with existing composite-unit stratigraphy near these holes. The assignment of lithologic units to an existing chronostratigraphy on the basis of nearby composite stratigraphic units may introduce error where correlations with nearby holes are ambiguous or the distance between holes is great, but we consider this the best technique for grouping stratigraphic information in this geologic environment at this time. Nonparametric tests of similarity were used to evaluate temporal and spatial stationarity in the distributions of sediment thickness. The following statistical tests were applied to the data: (1) the Kolmogorov-Smirnov (K-S) two-sample test to compare distribution shape, (2) the Mann-Whitney (M-W) test for similarity of two medians, (3) the Kruskal-Wallis (K-W) test for similarity of multiple medians, and (4) Levene's (L) test for the similarity of two variances. Results of these analyses corroborate previous work that concluded the thickness distributions of Quaternary sedimentary interbeds are locally stationary in space and time. The data set used in this study was relatively small, so the results presented should be considered preliminary, pending incorporation of data from more coreholes. Statistical tests also demonstrated that natural-gamma logs consistently fail to detect interbeds less than about 2-3 ft thick, although these interbeds are observable in lithologic logs. This should be taken into consideration when modeling aquifer lithology or hydraulic properties based on lithology.

Scientific Investigations Report

Near-real-time geochemical monitoring of Hawaiian volcanoes using energy dispersive X-ray fluorescence (EDXRF)

Syn-eruption geochemical monitoring during volcanic activity is an important component of integrated volcanic monitoring. Volcanoes on the Island of Hawai‘i are primarily monitored by the U.S. Geological Survey’s Hawaiian Volcano Observatory using instrumental networks, field surveys, satellite observations, and petrologic monitoring. In collaboration with the University of Hawaiʻi at Hilo, an important component of this monitoring is near-real-time (generally within 24 h of sample collection) bulk-rock geochemistry using benchtop energy-dispersive X-ray fluorescence (EDXRF). Bulk-rock geochemistry, coupled with additional petrologic and geophysical analyses, are used to track eruption dynamics to help facilitate identification and understanding of changes that signal the onset of potentially hazardous activity. In this paper, we present EDXRF methodology for bulk-rock analysis used to evaluate the 2018 Kīlauea and 2022 Mauna Loa eruptions and compare this technique to other geochemical methods. Syn-eruption geochemical monitoring using EDXRF provides reliable quantitative data that is important for understanding eruption dynamics. Critical to this process are calibrating the instrument for analysis over the same range of compositions expected during volcanic activity, compiling a relevant database from past eruptions on the same instrument for comparison, and having the physical infrastructure and trained personnel to complete the analyses in a timely fashion. In addition to the scientific goals of petrologic monitoring, near-real-time geochemical analysis in Hawaii provides important information about the nature of on-going eruptions and informs decision-makers and the public about associated evolving hazards.

Hawaii

Wildfire risk information sources and the acceptability of fuels treatments near select WUI communities in the Western United States

Fuels treatments intended to reduce fuel loads and improve forest health on public lands offer one way to reduce wildfire hazards in the wildland-urban interface (WUI), where the natural and built environments meet. However, for fuels treatment implementation to be successful, it must comply with regulatory and scientific standards and be supported by local communities, as lack of acceptance can lead to alterations, delays, or abandonment. To foster support, public land managers can engage directly with residents in communities near treatment areas through various communication channels or engage indirectly through trusted local partners. This research uses paired household survey and observed parcel-level wildfire risk assessment data to investigate wildfire risk information sources' role in the acceptability of fuels treatment approaches on public lands near select WUI communities in the Western United States. We find that information deemed useful from sources is often positively correlated with acceptability, while information deemed not useful is sometimes negatively correlated. Local sources of information tend to be widely received, perceived as useful, and have positive correlations with acceptability, while nonlocal sources vary in their receipt, perceived usefulness, and correlations with acceptability. Public land managers, particularly those from national organizations, may benefit from leveraging and aligning messaging with trusted local partners. Developing fuels treatment plans that consider existing local sentiments may facilitate public trust in managers and acceptability of treatments.

Colorado, New Mexico, Oregon, Washington, Wyoming

Environmental quality and preservation; reefs, corals, and carbonate sands; guides to reef-ecosystem health and environment

Introduction In recent years, the health of the entire coral reef ecosystem that lines the outer shelf off the Florida Keys has declined markedly. In particular, loss of those coral species that are the building blocks of solid reef framework has significant negative implications for economic vitality of the region. What are the reasons for this decline? Is it due to natural change, or are human activities (recreational diving, ship groundings, farmland runoff, nutrient influx, air-borne contaminants, groundwater pollutants) a contributing factor and if so, to what extent? At risk of loss are biologic resources of the reefs, including habitats for endangered species in shoreline mangroves, productive marine and wetland nurseries, and economic fisheries. A healthy reef ecosystem builds a protective offshore barrier to catastrophic wave action and storm surges generated by tropical storms and hurricanes. In turn, a healthy reef protects the homes, marinas, and infrastructure on the Florida Keys that have been designed to capture a lucrative tourism industry. A healthy reef ecosystem also protects inland agricultural and livestock areas of South Florida whose produce and meat feed much of the United States and other parts of the world. In cooperation with the National Oceanic and Atmospheric Administration's (NOAA) National Marine Sanctuary Program, the U.S. Geological Survey (USGS) continues longterm investigations of factors that may affect Florida's reefs. One of the first steps in distinguishing between natural change and the effects of human activities, however, is to determine how coral reefs have responded to past environmental change, before the advent of man. By so doing, accurate scientific information becomes available for Marine Sanctuary management to understand natural change and thus to assess and regulate potential human impact better. The USGS studies described here evaluate the distribution (location) and historic vitality (thickness) of Holocene reefs in South Florida, relative to type of underlying bedrock morphology, and their varied natural response to rising sea level. These studies also assess movement and accumulation of sands, relative to direction of prevailing energy, and origin of the component sand grains. Geophysical data collected with highresolution sound-wave instruments that provide pictures of the sediment and bedrock are used to interpret sediment thickness. Reef thickness is determined by collecting limestone rock cores by drilling. Drill cores through reefs are used to identify the coral species that built them and to determine how reefs reacted to rising sea level. These data are supplemented by using isotope-dating techniques to derive the carbon-14 (C14) age of the corals and mangrove peat in the cores. Mangrove peat forms in very shallow water and at the shoreline but is found today buried beneath offshore reefs.

Open-File Report

Regional estimates of ecological services derived from U.S. Department of Agriculture conservation programs in the Mississippi Alluvial Valley

The Mississippi Alluvial Valley (MAV) is the Nation?s largest floodplain and this once predominantly forested ecosystem provided significant habitat for a diverse flora and fauna, sequestered carbon in trees and soil, and stored floodwater, sediments, and nutrients within the floodplain. This landscape has been substantially altered by the conversion of nearly 75% of the riparian forests, predominantly to agricultural cropland, with significant loss and degradation of important ecosystem services. Large-scale efforts have been employed to restore the forest and wetland resources and the U.S. Department of Agriculture (USDA) Wetlands Reserve Program (WRP) and Conservation Reserve Program (CRP) represent some of the most extensive restoration programs in the MAV. The objective of the WRP is to restore and protect the functions and values of wetlands in agricultural landscapes with an emphasis on habitat for migratory birds and wetland-dependent wildlife, protection and improvement of water quality, flood attenuation, ground water recharge, protection of native flora and fauna, and educational and scientific scholarship. The degree to which these conservation practices can restore ecosystem functions and services is not well known. This project was initiated to quantify existing ecological services derived from USDA conservation practices in the MAV as part of the USDA Conservation Effects Assessment Project, Wetlands Component (CEAP-Wetlands). The U.S. Geological Survey (USGS), in collaboration with the USDA Natural Resources Conservation Service, the USDA Farm Service Agency, the U.S. Fish and Wildlife Service, and Ducks Unlimited, collected data on soils, vegetation, nitrogen cycling, migratory birds, and amphibians from 88 different sites between 2006 and 2008. Results from restored WRP sites were compared to baseline data from active agricultural cropland (AG) to evaluate changes in ecosystem services.

Arkansas, Kentucky, Louisiana, Mississippi, Missou

Mineral resources of the Sagebrush Focal Areas of Idaho, Montana, Nevada, Oregon, Utah, and Wyoming

Scientific Investigations Report 2016–5089 and accompanying data releases are the products of the U.S. Geological Survey (USGS) Sagebrush Mineral-Resource Assessment (SaMiRA). The assessment was done at the request of the Bureau of Land Management (BLM) to evaluate the mineral-resource potential of some 10 million acres of Federal and adjacent lands in Idaho, Montana, Nevada, Oregon, Utah, and Wyoming. The need for this assessment arose from the decision by the Secretary of the Interior to pursue the protection of large tracts of contiguous habitat for the greater sage-grouse ( Centrocercus urophasianus ) in the Western United States. One component of the Department of the Interior plan to protect the habitat areas includes withdrawing selected lands from future exploration and development of mineral and energy resources, including copper, gold, silver, rare earth elements, and other commodities used in the U.S. economy. The assessment evaluates the potential for locatable minerals such as gold, copper, and lithium and describes the nature and occurrence of leaseable and salable minerals for seven Sagebrush Focal Areas and additional lands in Nevada (“Nevada additions”) delineated by BLM. Supporting data are available in a series of USGS data releases describing mineral occurrences (the USGS Mineral Deposit Database or “USMIN”), oil and gas production and well status, previous mineral-resource assessments that covered parts of the areas studied, and a compilation of mineral-use cases based on data provided by BLM, as well as results of the locatable mineral-resource assessment in a geographic information system. The present assessment of mineral-resource potential will contribute to a better understanding of the economic and environmental trade-offs that would result from closing approximately 1 0 million acres of Federal lands to mineral entry.

Idaho, Montana, Nevada, Oregon, Utah, Wyoming

Chapter A6.4. Measurement of pH

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A6.4, provides guidance and protocols for the measurement of pH of a water sample, which include the scientific basis of the measurement, selection and maintenance of equipment, calibration, procedures for measurement and reporting, and troubleshooting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.4, version 2.0, by G.F. Ritz and J.A. Collins. The pH of natural waters is routinely measured when water samples are collected, is often measured continually at USGS streamgages, and is a parameter regularly measured during laboratory and field experiments. The field methods for measuring pH described in this chapter are applicable to most natural waters. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods

Status of groundwater quality in the San Fernando--San Gabriel study unit, 2005--California GAMA Priority Basin Project

Groundwater quality in the approximately 460-square-mile San Fernando--San Gabriel (FG) study unit was investigated as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study area is in Los Angeles County and includes Tertiary-Quaternary sedimentary basins situated within the Transverse Ranges of southern California. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA FG study was designed to provide a spatially unbiased assessment of the quality of untreated (raw) groundwater in the primary aquifer systems (hereinafter referred to as primary aquifers) throughout California. The assessment is based on water-quality and ancillary data collected in 2005 by the USGS from 35 wells and on water-quality data from the California Department of Public Health (CDPH) database. The primary aquifers were defined by the depth interval of the wells listed in the CDPH database for the FG study unit. The quality of groundwater in primary aquifers may be different from that in the shallower or deeper water-bearing zones; shallow groundwater may be more vulnerable to surficial contamination. This study assesses the status of the current quality of the groundwater resource by using data from samples analyzed for volatile organic compounds (VOCs), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. This status assessment is intended to characterize the quality of groundwater resources in the primary aquifers of the FG study unit, not the treated drinking water delivered to consumers by water purveyors.

California

Well network installation and hydrogeologic data collection, Assateague Island National Seashore, Worcester County, Maryland, 2010

The U.S. Geological Survey, as part of its Climate and Land Use Change Research and Development Program, is conducting a multi-year investigation to assess potential impacts on the natural resources of Assateague Island National Seashore, Maryland that may result from changes in the hydrologic system in response to projected sea-level rise. As part of this effort, 26 monitoring wells were installed in pairs along five east-west trending transects. Each of the five transects has between two and four pairs of wells, consisting of a shallow well and a deeper well. The shallow well typically was installed several feet below the water table—usually in freshwater about 10 feet below land surface (ft bls)—to measure water-level changes in the shallow groundwater system. The deeper well was installed below the anticipated depth to the freshwater-saltwater interface—usually in saltwater about 45 to 55 ft bls—for the purpose of borehole geophysical logging to characterize local differences in lithology and salinity and to monitor tidal influences on groundwater. Four of the 13 shallow wells and 5 of the 13 deeper wells were instrumented with water-level recorders that collected water-level data at 15-minute intervals from August 12 through September 28, 2010. Data collected from these instrumented wells were compared with tide data collected north of Assateague Island at the Ocean City Inlet tide gage, and precipitation data collected by National Park Service staff on Assateague Island. These data indicate that precipitation events coupled with changes in ambient sea level had the largest effect on groundwater levels in all monitoring wells near the Atlantic Ocean and Chincoteague and Sinepuxent Bays, whereas precipitation events alone had the greatest impact on shallow groundwater levels near the center of the island. Daily and bi-monthly tidal cycles appeared to have minimal influence on groundwater levels throughout the island and the water-level changes that were observed appeared to vary among well sites, indicating that changes in lithology and salinity also may affect the response of water levels in the shallow and deeper groundwater systems throughout the island. Borehole geophysical logs were collected at each of the 13 deeper wells along the 5 transects. Electromagnetic induction logs were collected to identify changes in lithology; determine the approximate location of the freshwater-saltwater interface; and characterize the distribution of fresh and brackish water in the shallow aquifer, and the geometry of the fresh groundwater lens beneath the island. Natural gamma logs were collected to provide information on the geologic framework of the island including the presence and thickness of finer-grained deposits found in the subsurface throughout the island during previous investigations. Results of this investigation show the need for collection of continuous water-level data in both the shallow and deeper parts of the flow system and electromagnetic induction and natural gamma geophysical logging data to better understand the response of this groundwater system to changes in precipitation and tidal forcing. Hydrologic data collected as part of this investigation will serve as the foundation for the development of numerical flow models to assess the potential effects of climate change on the coastal groundwater system of Assateague Island.

Maryl