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USGS2008

Improvements in the use of aquatic herbicides and establishment of future research directions

Peer-reviewed literature over the past 20 years identifies significant changes and improvements in chemical control strategies used to manage nuisance submersed vegetation. The invasive exotic plants hydrilla (Hydrilla verticillata L.f. Royle) and Eurasian watermilfoil (Myriophyllum spicatum L.) continue to spread and remain the plant species of greatest concern for aquatic resource managers at the national scale. Emerging exotic weeds of regional concern such as egeria (Egeria densa Planch.), curlyleaf pondweed (Potamogeton crispus L.), and hygrophila (Hygrophila polysperma (Roxb.) T. Anders), as well as native plants such as variable watermilfoil (Myriophyllum heterophyllum Michx), and cabomba (Cabomba caroliniana Gray) are invasive outside their home ranges. In addition, there is always the threat of new plant introductions such as African elodea (Lagarosiphon major (Ridley) Moss) or narrow-leaf anacharis (Egeria najas Planchon). The registration of the bleaching herbicide fluridone in the mid 1980s for whole-lake and large-scale management stimulated numerous lines of research involving reduction of use rates, plant selectivity, residue monitoring, and impacts on fisheries. In addition to numerous advances, the specificity of fluridone for a single plant enzyme led to the first documented case of herbicide resistance in aquatic plant management. The resistance of hydrilla to fluridone has stimulated a renewed interest by industry and others in the registration of alternative modes of action for aquatic use. These newer chemistries tend to be enzyme-specific compounds with favorable non-target toxicity profiles. Registration efforts have been facilitated by increased cooperation between key federal government agencies that have aquatic weed control and research responsibilities, and regulators within the U.S. Environmental Protection Agency (USEPA). We reviewed past and current research efforts to identify areas in need of further investigation and to establish priorities for future research directions in chemical management of submersed plants. The priorities we identified include: (A) improving methods for evaluating non-target impacts of herbicides with an emphasis on threatened and endangered species, or species of special concern; (B) improving herbicide performance in flowing-water environments, including irrigation canals; (C) screening and developing new herbicides to supplement fluridone for large-scale or whole-lake management approaches; (D) screening and developing new organic algaecides to supplement the use of copper-based compounds; (E) developing risk assessment tools to educate the public on the risks of invasive species and chemical management options; (F) increasing cooperative research with ecologists and fisheries scientists to evaluate the long-term impacts of invasive species introductions and herbicide programs on native plant assemblages, water quality, and fish populations; and (G) improving the integration of chemical control technology with other aquatic plant management disciplines. While circumstances may dictate setting new priorities or dropping current ones, the list we have generated represents our vision of the needs that will require the greatest focus over the next several years.

Conference Paper↗

USGS1992

The zebra mussel (Dreissena polymorpha), a new pest in North America: reproductive mechanisms as possible targets of control strategies

The zebra mussel (Dreissena polymorpha) has spread rapidly in temperate fresh waters of North America since its introduction into the Great Lakes in 1985 or 1986. It attaches to hard substrates, forming layers, occluding water intakes, encrusting and killing native mussels, filtering algae in competition with other planktivores, and possibly interfering with fish spawning. It reproduces prolifically, suggesting that an approach to its control may be by controlling its reproduction. Previous literature suggests that spawning in bivalves is regulated by both environmental and internal chemical cues. A suggested sequence is that phytoplankton chemicals initially trigger spawning; chemicals associated with gametes provide a species-specific pheromonal positive feedback for spawning; and the response to environmental chemicals is mediated internally by serotonin (5-HT). The role of 5-HT in zebra mussels is under investigation. Both males and females can be induced to spawn by either injection or external application of 5-HT. The response can also be activated by 8-hydroxy-2-(di-n-propylamino)-tetralin, an agonist at 5-HT 1A receptors. HPLC analysis has detected 5-HT as the major biogenic amine in both male and female gonads. 5-HT immunocytochemistry demonstrates nerves containing serotonergic fibers innervating gonads of both males and females, with prominent varicosities surrounding the follicles in both sexes. A role of 5-HT in mediating spawning responses in zebra mussels is thus strongly supported. These studies have shown that reproductive behavior of zebra mussels can be modified by outside chemicals, a property that may be exploited for purposes of control.

Invertebrate Reproduction and Development↗

USGS1951

Further data on removal and repopulation of the breeding birds in a spruce-fir forest community

During June and July of 1950 the writers were engaged in a study of bird populations in northern Maine in conjunction with investigations to determine the effectiveness of the breeding bird population as a controlling agent of the spruce budworm, Choristoneura fumiferana . The field work was started in 1949 and the current project was a continuation. The entomological phase of the study during both seasons was conducted under the supervision of Philip B. Dowden and V. M. Carolin of the Bureau of Entomology and Plant Quarantine; the initial bird population study was made by John W. Aldrich and Robert E. Stewart of the Fish and Wildlife Service (See page 471 of this issue of 'The Auk'). Many data were accumulated concerning bird population dynamics during the initial study. To compare the results of the two seasons and to present other significant facts, additional data are presented here.

The Auk↗

USGS2023

First investigations on lamprey responses to elevated total dissolved gas exposure and risk of gas bubble trauma

A flexible spill program in the federal Columbia River power system increased the total dissolved gas (TDG) water quality standards (i.e., the gas cap) from 120% to 125%. Spill is used to pass juvenile salmon (Oncorhynchus spp.) over dams, but it can generate elevated TDG, and exposed fish can develop gas bubble trauma (GBT) or experience mortality. Juvenile salmon are monitored for GBT through the Fish Passage Center’s (FPC), and under the flexible spill program, native non-salmonid fishes are also monitored. Pacific Lamprey (Entosphenus tridentatus) are exposed to elevated TDG, but nothing is known about their risk for GBT. This project is the first to evaluate GBT in lamprey, beginning with larval and juvenile lamprey in a controlled laboratory setting. These early life stages were chosen for this initial work because they have been shown to be more sensitive to GBT in other fish species. We modified the FPC protocol for GBT exams to be specific to lamprey and ranked bubbles in the mouth, eyes (juveniles only), gill pores, first and second dorsal fins, caudal fin, anal fin, vent, and body. We followed the FPC ranking criteria and assigned rank based on the proportion of the area occluded with bubbles, as 0=no bubbles, 1=1-5%, 2=6-25%, 3=26-50%, and 4=>50%. Four experiments were completed with larval lamprey from January to September 2022 using small (70 mm total length or less) and large (86 mm total length or greater) larvae in approximately equal proportions. Experiments included: (1) 130% TDG for 31 d, (2) 125% TDG for 91 d, (3) 130% TDG for 20 d with assessments of burrowing performance, and (4) 128-138% TDG for 3-4 d with assessments of predator avoidance ability and the corresponding untreated control groups. The first and second experiments had similar study designs and findings. First, we tested an acute exposure at 130% TDG and then we tested a chronic exposure at 125%, to represent a full spill season. None of the controls (exposed to normally saturated water) experienced mortality or showed GBT signs. Few lamprey in the treatment groups (5% in Experiment 1; 0% in Experiment 2) showed GBT signs, and there were no mortalities (n=200 fish experiment 1; n=100 fish Experiment 2). Lamprey with GBT signs had bubbles on the body, with low severity ranks. During external exams for Experiment 2, we observed bubbles in the gut of several lamprey. The light coloration and transparency of the body made these observations possible, and we confirmed the finding with internal exams. From day 9 to day 91, 70.8% of the lamprey examined had bubbles in the gut. We observed five lamprey that were positively buoyant in the test tanks, and we likely underestimated the prevalence of floating as our procedures were not initially designed to document this sign. In our third experiment, burrowing performance was not significantly different between lamprey exposed to 130% TDG and controls. Mortality was 4.2% in the treatment group, but no GBT signs were observed. The proportion of lamprey with positive buoyancy increased through time, with 87.5% of fish floating on day 20 (end of the test). Bubbles in the gut were observed for some lamprey on each of five sampling dates (day 2 to 20), with prevalence ranging from 50-100%. Median burrow times ranged from 28 to 154 sec for treatment fish and from 40 to 100 sec for controls. We noted some atypical behaviors during burrow performance tests, including lamprey that were positively buoyant and unable to descend through 0.5 m of water to reach the sediment as well as lamprey that were unable to complete burrowing (within 10 min test period). These lamprey were so buoyant that they repeatedly floated to the surface of the water when they stopped or slowed their burrowing movements. Predator avoidance ability was assessed in our fourth experiment by exposing lamprey with GBT signs (floating) and controls to sculpin (Cottus spp.) until about 50% of the fish had been consumed or 2 h had passed. We completed five predation trials, testing the hypothesis that an equal proportion of treatment and control lamprey would be consumed. Treatment groups were generated by exposing 15 lamprey to 128-138% TDG for 3-4 d, until at least 10 lamprey were floating. Overall, 41 treatment and 46 control fish were eaten and there was no evidence that sculpin preferentially preyed upon lamprey with GBT signs. Additional tests with another predator are recommended. Two experiments were completed with juvenile lamprey from March to November 2022: Experiment 5 exposed fish to 125% TDG for 10 d and Experiment 6 exposed fish to 125% for 16 d. Mortality rates for the treatment groups were 21.7% and 20.0% for these experiments, respectively, and few lamprey (4 per experiment) showed GBT signs. With the results from experiments pooled, bubbles were observed in all body areas with low severity ranks (means 0-1). We observed some exophthalmia and bubbles behind the gill pores, in addition to bubbles in the gut and fish floating. The presence of bubbles in or near the gill pores was the likely cause of death as exam findings included enlarged gill pore areas and restricted openings. This project provided the first insights into lamprey responses to elevated TDG, but substantial learning opportunities remain. Our findings highlight that lamprey are vulnerable to GBT, but the effects are generally sublethal and would not be detected using FPC exam procedures. For example, we observed larval and juvenile lamprey that had bubbles in the gut and/or were floating, although these conditions were not consistently linked. More data are needed, but we surmise that it takes some time for bubbles to form in sufficient quantity to create the floatation required to overcome the mass of the lamprey. Positive buoyancy in natural settings could have substantial impacts to the risk of mortality for lamprey. Future studies could test GBT risk for larval lamprey in burrows, investigate the influence of lamprey size, measure performance (e.g., burrowing, swimming, predator avoidance ability) after elevated TDG exposure, and describe the rate that GBT signs dissipate when lamprey are returned to normally saturated water.

Report↗

USGS2008

Alkylphenols, other endocrine-active chemicals, and fish responses in three streams in Minnesota — Study design and data, February-September 2007

This report presents the study design and environmental data for an integrated chemical and biological study of three streams (South Fork Crow River, Redwood River, and Grindstone River) that receive wastewater in Minnesota. The objective of the study was to identify distribution patterns of endocrine-active chemicals and other organic chemicals indicative of wastewater, and to identify fish responses in the same streams. Endocrine-active chemicals are a class of chemicals that interfere with the natural regulation of endocrine systems, and an understanding of their distribution in aquatic systems is important so that aquatic organism exposure can be evaluated. This study was a cooperative effort of the U.S. Geological Survey (USGS), the Minnesota Pollution Control Agency, and St. Cloud State University (St. Cloud, Minn.). The USGS collected and analyzed water and quality-assurance samples and measured streamflow during six sampling events in each of three streams. Water samples were collected upstream from and at two successive points downstream from wastewater-treatment plant (WWTP) effluent discharge and from treated effluent from February through September 2007. Bed-sediment samples were collected during one sampling period at each of the stream locations. Water and bed-sediment samples were analyzed for endocrine-active chemicals including alkylphenols, alkylphenol polyethoxylates, and nonylphenol ethoxycarboxlylates (NPECs). Water samples also were analyzed for major ions, nutrients, and organic carbon. In addition, as part of an intensive time-series investigation, the USGS staff collected daily water samples for 8 weeks from the Redwood River near Marshall, Minn., for analyses of total alkylphenols and atrazine. St. Cloud State University staff collected and analyzed fish to determine male fish responses at all water sampling sites and at an additional site near the discharge of wastewater-treatment plant effluent to these streams. Male fish responses included the presence and concentration of vitellogenin in plasma, gonadosomatic indices, and histological characterizations of liver and testes tissue. Hydrologic, chemical and biological characteristics were different among sites. The percentage of streamflow contributed by WWTP effluent (ranging from less than 1 to 79 percent) was greatest at the South Fork Crow River and least at the Grindstone River. WWTP effluent generally contributed the greatest percentage of streamflow during winter and late summer when streamflows were low. A wide variety of chemicals were detected. More chemicals were detected in WWTP effluent samples than in stream samples during most time periods. The most commonly detected chemicals in samples collected monthly and analyzed at the USGS National Research Program Laboratory were 2,6-di- tert -butyl-1,4-benzoquinone, 2,6-di- tert -butyl-4-methylphenol, 3- beta -coprostanol, 4-methylphenol, 4-nonylphenol (NP), 4- tert -octylphenol, bisphenol A, cholesterol, ethylenediaminetetraacetic acid, and triclosan. The chemicals 4-nonylphenolmonoethoxycarboxylate (NP1EC), 4-nonylphenoldiethoxycarboxylate (NP2EC), and 4-nonylphenoltriethoxycarboxylate (NP3EC) also were detected. Excluding nondetections, the sum of NP1EC through NP3EC concentrations ranged from 5.1 to 260 µg/L among all samples. NP was detected in upstream, effluent, and downstream samples in each stream during at least one time period. NP was detected in 49 percent of environmental samples. Excluding nondetections, concentrations of NP ranged from 100 to 880 nanograms per liter among all samples. NP was also detected in more than one-half of the bed-sediment samples. The most commonly detected wastewater indicator chemicals in samples analyzed by schedule 4433 at the USGS National Water Quality Laboratory were 3,4-dichlorophenyl isocyanate, acetyl-hexamethyl-tetrahydronaphthalene, benzophenone, cholesterol, hexahydrohexamethyl-cyclopenta-benzopyran, N,N-diethyl- meta -toluamide, and tri(dichloroisopropyl) phosphate. Male fish responses were the focus of the fish analyses, and 508 male fish were collected among all sampling sites. Vitellogenin was detected in 57 percent of the 415 male fish analyzed; concentrations ranged from an estimated value of 0.1 to 330 micrograms per milliliter (µg/mL) (average of 17.1 µg/mL). Intersex (the presence of oocytes in testes tissue) was observed in only one fathead minnow from an upstream site on the Grindstone River.

Minnesota↗

USGS2006

Contaminant exposure and potential effects on terrestrial vertebrates residing in the National Capital Region network and Mid-Atlantic network

Part of the mission of the National Park Service is to preserve the natural resources, processes, systems, and associated values of its units in an unimpaired condition. Environmental contamination and pollution processes are well recognized stressors addressed by its management policies and plans. A recent study indicates that contemporary terrestrial vertebrate ecotoxicological data are lacking for 59 of 126 Park Service units located in coastal watersheds exhibiting serious water quality problems or high vulnerability to pollution. Based upon these findings, a more in-depth evaluation of contaminant threats and ecotoxicological data gaps related to terrestrial vertebrates was undertaken at 23 Inventory and Monitoring National Park units in National Capital Region and Mid-Atlantic Networks. Ecotoxicological data were compiled for each park unit through literature searches and meetings with Park Service personnel. Information on contemporary and on persistent legacy pollutants in air, water, soil, and terrestrial vertebrates (amphibians, reptiles, birds and mammals) were evaluated. To identify contaminant threats in proximity to the 23 Park Service study units, data was gathered on National Priority List Superfund sites, Section 303(d) Impaired Waterbodies, the number and relative toxicity of current use pesticides and herbicides, Toxic Release Inventory sites and discharge of priority pollutants, and Fish Consumption Advisories. A metric was derived that described the quality and quantity of existing data for each park, and in combination with known contaminant threats, park units in need of additional study were identified. Results demonstrated that over half of the Park Service study units are near Toxic Release Inventory sites discharging dioxins, polychlorinated biphenyls, lead or mercury into air or water, and fish consumption advisories are in effect at or near 22 of the 23 study units. Pesticide and herbicide use at the park units is minimal, with the exception of those units with significant agricultural leases. Despite highly regulated use, many of the pesticides and herbicides applied are believed to be highly toxic to amphibians, and some of the compounds are also highly toxic to birds. Only 70 reports were found that describe terrestrial vertebrate ecotoxicology data on or near the study units. Of the greater than 75,000 compounds in commerce in the United States, existing terrestrial vertebrate exposure and effects data in the pr esent study were limited to 58 legacy organochlorine pesticides, polychlorinated biphenyls and individual congeners, insecticides and rodenticides, metals, and some contemporary compounds (e.g., polybrominated diphenyl ether flame retardants, and alkylphenol and ethoxylate surfactants). Based upon these and other findings, ecotoxicological monitoring and research investigations of terrestrial vertebrates are warranted at several National Parks. These include Shenandoah National Park, Richmond National Battlefield, Chesapeake & Ohio Canal National Historic Park, Valley Forge National Historic Park, Hopewell Furnace National Historic Site, Monocacy National Battlefield, and Harpers Ferry National Historic Park. The types of investigations vary according to the species present at these parks and potential contaminant threats, but should focus on contemporary use pesticides and herbicides, polychlorinated biphenyls, mercury, lead, and perhaps, emerging contaminants including antibiotics, flame retardants, pharmaceuticals, and surfactants. Other management recommendations include additional training for natural resource staff members in the area of ecotoxicology, inclusion of terrestrial vertebrate contaminant monitoring and the Contaminant Assessment Process (U.S. Geological Survey Biomonitoring of Environmental Status and Trends Project) into the National Park Service Vital Signs Program, development of protocols for hand ling and toxicological analysis of dead or seemingly affected wildlife, consideration of some alternative methods and compounds for pest management and weed control, and use of non-toxic fishing tackle by visitors.

Maryland, Pennsylvania, Virginia↗

USGS2002

Fasting modifies Aroclor 1254 impact on plasma cortisol, glucose and lactate responses to a handling disturbance in Arctic charr

Integrated effects of polychlorinated biphenyl (PCB) and nutritional status on responses to handling disturbance were investigated in the Arctic charr ( Salvelinus alpinus ). The fish were orally contaminated with Aroclor 1254 and held either with or without food for 5 months before they were subjected to a 10-min handling disturbance. Food-deprived fish were given 0, 1, 10 or 100 mg PCB kg −1 and the fed fish 0 or 100 mg PCB kg −1 . Plasma cortisol, glucose and lactate levels were measured at 0 (pre-handling), 1, 3, 6 and 23 h after the handling disturbance. Food-deprived control fish had elevated plasma cortisol levels compared with fed fish before handling. These basal cortisol levels were suppressed by PCB in food-deprived fish, and elevated by PCB in fed fish. The immediate cortisol and glucose responses to handling disturbance were suppressed by PCB in a dose-dependent way in food-deprived fish. Although these responses were also lowered by PCB in the fed fish, the effect was much less pronounced than in food-deprived fish. There were only minor effects on plasma lactate responses. Our findings suggest that the stress responses of the Arctic charr are compromised by PCB and that the long-term fasting, typical of high-latitude fish, makes these species particularly sensitive to organochlorines such as PCB.

Comparative Biochemistry and Physiology, Part C: T↗

USGS2019

Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon

Background Transcriptomic responses to immune stimulation were investigated in coho salmon (Oncorhynchus kisutch) with distinct growth phenotypes. Wild-type fish were contrasted to strains with accelerated growth arising either from selective breeding (i.e. domestication) or genetic modification. Such distinct routes to accelerated growth may have unique implications for relationships and/or trade-offs between growth and immune function. Results RNA-Seq was performed on liver and head kidney in four ‘growth response groups’ injected with polyinosinic-polycytidylic acid (Poly I:C; viral mimic), peptidoglycan (PGN; bacterial mimic) or PBS (control). These groups were: 1) ‘W’: wild-type, 2) ‘TF’: growth hormone (GH) transgenic salmon with ~ 3-fold higher growth-rate than W, 3) ‘TR’: GH transgenic fish ration restricted to possess a growth-rate equal to W, and 4) ‘D’: domesticated non-transgenic fish showing growth-rate intermediate to W and TF. D and TF showed a higher similarity in transcriptomic response compared to W and TR. Several immune genes showed constitutive expression differences among growth response groups, including perforin 1 and C-C motif chemokine 19-like. Among the affected immune pathways, most were up-regulated by Poly I:C and PGN. In response to PGN, the c-type lectin receptor signalling pathway responded uniquely in TF and TR. In response to stimulation with both immune mimics, TR responded more strongly than other groups. Further, group-specific pathway responses to PGN stimulation included NOD-like receptor signalling in W and platelet activation in TR. TF consistently showed the most attenuated immune response relative to W, and more DEGs were apparent in TR than TF and D relative to W, suggesting that a non-satiating ration coupled with elevated circulating GH levels may cause TR to possess enhanced immune capabilities. Alternatively, TF and D salmon are prevented from acquiring the same level of immune response as TR due to direction of energy to high overall somatic growth. Further study of the effects of ration restriction in growth-modified fishes is warranted. Conclusions These findings improve our understanding of the pleiotropic effects of growth modification on the immunological responses of fish, revealing unique immune pathway responses depending on the mechanism of growth acceleration and nutritional availability.

BMC Genomics↗

USGS2021

Differential susceptibility of Yukon River and Salish Sea stocks of Chinook salmon Oncorhynchus tshawytscha to ichthyophoniasis

Preliminary evidence suggests that Chinook salmon Oncorhynchus tshawytscha from the Yukon River may be more susceptible to Ichthyophonus sp. infections than Chinook from stocks further south. To investigate this hypothesis in a controlled environment, we experimentally challenged juvenile Chinook from the Yukon River and from the Salish Sea with Ichthyophonus sp. and evaluated mortality, infection prevalence and infection load over time. We found that juvenile Chinook salmon from a Yukon River stock were more susceptible to ichthyophoniasis than were those from a Salish Sea stock. After feeding with tissues from infected Pacific herring Clupea pallasii , Chinook salmon from both stocks became infected. The infection was persistent and progressive in Yukon River stock fish, where infections sometimes progressed to mortality, and histological examinations revealed parasite dissemination and proliferation throughout the host tissues. In Salish Sea-origin fish, however, infections were largely transient; host mortalities were rare, and parasite stages were largely cleared from most tissues after 3-4 wk. Susceptibility differences were evidenced by greater cumulative mortality, infection prevalence, parasite density, proportion of fish demonstrating a cellular response, and intensity of the cellular response among fish from the Yukon River stock. These observed differences between Chinook salmon stocks were consistent when parasite exposures occurred in both freshwater and seawater. These results support the hypothesis that a longer-standing host-pathogen relationship, resulting in decreased disease susceptibility, exists among Salish Sea Chinook salmon than among Yukon River conspecifics.

Diseases of Aquatic Organisms↗

USGS1995

The ecology of cormorants: some research needs and recommendations

Concerns about Double-crested Cormorants (Phalacrocorax auritus) have arisen because of their rapid population increase across North America and their economic impact on several aquaculture and commercial fish industries. In spite of the concern for cormorants, little published research is available that addresses either basic population biology questions or management issues. Based on a literature review, I recommend that research be conducted in four areas. First, a large-scale banding and marking program should be initiated so that population models can be used to estimate age- and sex-specific survival and fecundity (as has been done for the Shag [P. aristotelis] in Europe). By marking individual birds, survival and movement rates can be estimated between nesting colonies, which will provide information about potential source versus sink colonies. Second, studies of movements during migration and winter are required. Presently, no data are available on habitat use during migration or on the length-of-stay by individual birds. This has important implications to how cormorants interact with other fish and wildlife species over a broad range. Studies of movements during winter with radio-marked birds should indicate whether the 'problem birds' at aquaculture sites are merely a few specialists. Third, limiting factors, such as contaminants and disease, should receive further investigation, especially in light of recent concerns over the outbreak of Newcastle disease. The relationship between contaminant levels and developmental abnormalities in young cormorants in certain areas of the Great Lakes in Canada and the United States remains equivocal. Fourth, further studies are needed to document the economic impacts of cormorants on Channel Catfish (Ictalurus punctatus) and other cultured fishes and to determine ways to reduce predation by fish-eating birds. Mesocosm experiments should be conducted to evaluate how different fish extraction rates affect final productivity of fish. Controlled experiments with different exclusion and scaring devices are needed. With radio-marked birds, it should be determined what the behavioral responses are to the different scaring devises. Also, providing alternative wetland feeding sites in regions of fish farm depredation might alleviate some of the pressure on farmers. Studies with radio-marked birds could evaluate effects of manipulation of 'natural' wetlands on use by birds during the winter period. Finally, any research directed at the Double-crested Cormorant should also evaluate its interactions with other fisheating waterbirds.

Book chapter↗

USGS2006

Development of water level regulation strategy for fish and wildlife, upper Mississippi River system

Water level regulation has been proposed as a tool for maintaining or enhancing fish and wildlife resources in navigation pools and associated flood plains of the Upper Mississippi River System. Research related to the development of water level management plans is being conducted under the Long Term Resource Monitoring Program. Research strategies include investigations of cause and effect relationships, spatial and temporal patterns of resource components, and alternative problem solutions. The principal hypothesis being tested states that water level fluctuations resulting from navigation dam operation create less than optimal conditions for the reproduction and growth of target aquatic macrophyte and fish species. Representative navigation pools have been selected to describe hydrologic, engineering, and legal constraints within which fish and wildlife objectives can be established. Spatial analyses are underway to predict the magnitude and location of habitat changes that will result from controlled changes in water elevation.

Mississippi River↗

USGS2025

Cardiac and behavioral responses to chemical and electrical immobilization in Lake Trout

Objective Immobilizing or anesthetizing fish is important for promoting fish welfare in numerous routine activities that involve handling. Electroanesthesia, an alternative to traditional chemical anesthetics, uses weak electrical current to immobilize fish while current is applied, resulting in near-immediate induction and recovery. The physiological effects of electroanesthesia appear to be minimal or comparable to those of chemical anesthetics, but knowledge gaps exist on cardiac responses during treatment and behavioral responses in a controlled setting. Methods Lake Trout Salvelinus namaycush were immobilized by one of four treatments: control (physical restraint); eugenol (AQUI-S 20E); and continuously applied, low-voltage electroanesthesia with either constant DC or transcutaneous electrical nerve stimulation (TENS). We evaluated the heart rate while fish were immobilized, reflexes at 1 h posttreatment, and survival and movements in a laboratory setting over a 6-d posttreatment period. Results The heart rates of fish immobilized with either electroanesthesia treatment (constant DC: mean ± SE = 12.6 ± 1.1 beats/min; TENS: 13.1 ± 1.2 beats/min) were not significantly different from those of control fish (10.0 ± 1.2 beats/min) while immobilized. However, fish immobilized with eugenol exhibited heart rates that were more than three times higher (32.1 ± 1.2 beats/min) than those of control fish while immobilized. Treatments had no effect on reflex scores at 1 h posttreatment, the 6-d survival rate of fish (100%), or movement behavior during the hours (1–24 h) or days (6 d) after treatment. Conclusions This study adds to a growing body of research finding a lack of negative physiological or behavioral responses resulting from continuously applied electroanesthesia, suggesting that it is at least as safe as many chemical anesthetics in this respect. The significant cardiac response of Lake Trout while immobilized with eugenol warrants further investigation. While the body of research on immobilizing agents in fish grows, species-specific data remain sparse, and users would benefit from pilot testing before wider application.

Transactions of the American Fisheries Society↗

USGS2009

Evaluating the spatial variation of total mercury in young-of-year yellow perch (Perca flavescens), surface water and upland soil for watershed-lake systems within the southern Boreal Shield

The primary objective of this research is to investigate relationships between mercury in upland soil, lake water and fish tissue and explore the cause for the observed spatial variation of THg in age one yellow perch ( Perca flavescens ) for ten lakes within the Superior National Forest. Spatial relationships between yellow perch THg tissue concentration and a total of 45 watershed and water chemistry parameters were evaluated for two separate years: 2005 and 2006. Results show agreement with other studies where watershed area, lake water pH, nutrient levels (specifically dissolved NO 3 − -N) and dissolved iron are important factors controlling and/or predicting fish THg level. Exceeding all was the strong dependence of yellow perch THg level on soil A-horizon THg and, in particular, soil O-horizon THg concentrations (Spearman ρ = 0.81). Soil B-horizon THg concentration was significantly correlated (Pearson r = 0.75) with lake water THg concentration. Lakes surrounded by a greater percentage of shrub wetlands (peatlands) had higher fish tissue THg levels, thus it is highly possible that these wetlands are main locations for mercury methylation. Stepwise regression was used to develop empirical models for the purpose of predicting the spatial variation in yellow perch THg over the studied region. The 2005 regression model demonstrates it is possible to obtain good prediction (up to 60% variance description) of resident yellow perch THg level using upland soil O-horizon THg as the only independent variable. The 2006 model shows even greater prediction ( r 2 = 0.73, with an overall 10 ng/g [tissue, wet weight] margin of error), using lake water dissolved iron and watershed area as the only model independent variables. The developed regression models in this study can help with interpreting THg concentrations in low trophic level fish species for untested lakes of the greater Superior National Forest and surrounding Boreal ecosystem.

Science of the Total Environment↗

USGS2009

Revised Comparisons of Simulated Hydrodynamics and Water Quality for Projected Demands in 2046, Pueblo Reservoir, Southeastern Colorado

Pueblo Reservoir is one of southeastern Colorado's most valuable water resources. The reservoir provides irrigation, municipal, and industrial water to various entities throughout the region. The reservoir also provides flood control, recreational activities, sport fishing, and wildlife enhancement to the region. The Southern Delivery System (SDS) project is a regional water-delivery project that has been proposed to provide a safe, reliable, and sustainable water supply through the foreseeable future (2046) for Colorado Springs, Fountain, Security, and Pueblo West. Discussions with the Bureau of Reclamation and the U.S. Geological Survey led to a cooperative agreement to simulate the hydrodynamics and water quality of Pueblo Reservoir. This work has been completed and described in a previously published report, U.S. Geological Survey Scientific Investigations Report 2008-5056. Additionally, there was a need to make comparisons of simulated hydrodynamics and water quality for projected demands associated with the various Environmental Impact Statements (EIS) alternatives and plans by Pueblo West to discharge treated wastewater into the reservoir. Wastewater plans by Pueblo West are fully independent of the SDS project. This report compares simulated hydrodynamics and water quality for projected demands in Pueblo Reservoir resulting from changes in inflow and water quality entering the reservoir, and from changes to withdrawals from the reservoir as projected for the year 2046. Four of the seven EIS alternatives were selected for scenario simulations. The four U.S. Geological Survey simulation scenarios were the No Action scenario (EIS Alternative 1), the Downstream Diversion scenario (EIS Alternative 2), the Upstream Return-Flow scenario (EIS Alternative 4), and the Upstream Diversion scenario (EIS Alternative 7). Additionally, the results of an Existing Conditions scenario (year 2006 demand conditions) were compared to the No Action scenario (projected demands in 2046) to assess changes in water quality over time. All scenario modeling used an external nutrient-decay model to simulate degradation and assimilation of nutrients along the riverine reach upstream from Pueblo Reservoir. Reservoir modeling was conducted using the U.S. Army Corps of Engineers CE-QUAL-W2 two-dimensional water-quality model. Lake hydrodynamics, water temperature, dissolved oxygen, dissolved solids, dissolved ammonia, dissolved nitrate, total phosphorus, algal biomass, and total iron were simulated. Two reservoir site locations were selected for comparison. Results of simulations at site 3B were characteristic of a riverine environment in the reservoir, whereas results at site 7B (near the dam) were characteristic of the main body of the reservoir. Simulation results for the epilimnion and hypolimnion at these two sites also were evaluated and compared. The simulation results in the hypolimnion at site 7B were indicative of the water quality leaving the reservoir. Comparisons of the different scenario results were conducted to assess if substantial differences were observed between selected scenarios. Each of the scenarios was simulated for three contiguous years representing a wet, average, and dry annual hydrologic cycle (water years 2000 through 2002). Additionally, each selected simulation scenario was evaluated for differences in direct and cumulative effects on a particular scenario. Direct effects are intended to isolate the future effects of the scenarios. Cumulative effects are intended to evaluate the effects of the scenarios in conjunction with all reasonably foreseeable future activities in the study area. Comparisons between the direct- and cumulative-effects analyses indicated that there were not large differences in the results between most of the simulation scenarios, and, as such, the focus of this report was on results for the direct-effects analysis. Additionally, the differences between simulation results generally were

Scientific Investigations Report↗

USGS2015

Potential effects of climate change on the growth of fishes from different thermal guilds in Lakes Michigan and Huron

We used a bioenergetics modeling approach to investigate potential effects of climate change on the growth of two economically important native fishes: yellow perch ( Perca flavescens ), a cool-water fish, and lake whitefish ( Coregonus clupeaformis ), a cold-water fish, in deep and oligotrophic Lakes Michigan and Huron. For assessing potential changes in fish growth, we contrasted simulated fish growth in the projected future climate regime during the period 2043-2070 under different prey availability scenarios with the simulated growth during the baseline (historical reference) period 1964-1993. Results showed that effects of climate change on the growth of these two fishes are jointly controlled by behavioral thermoregulation and prey availability. With the ability of behavioral thermoregulation, temperatures experienced by yellow perch in the projected future climate regime increased more than those experienced by lake whitefish. Thus simulated future growth decreased more for yellow perch than for lake whitefish under scenarios where prey availability remains constant into the future. Under high prey availability scenarios, simulated future growth of these two fishes both increased but yellow perch could not maintain the baseline efficiency of converting prey consumption into body weight. We contended that thermal guild should not be the only factor used to predict effects of climate change on the growth of a fish, and that ecosystem responses to climate change should be also taken into account.

Lake Huron, Lake Michigan↗

USGS2020

Revealing migration and reproductive habitat of invasive fish under an active population suppression program

Endemic species face a variety of threats including predation from non‐native invaders. In some cases, however, invasive species can be managed by directly suppressing populations, and tracking technologies that allow researchers to identify movement patterns and aggregations representative of the population can facilitate suppression activities. In Yellowstone Lake (Yellowstone National Park, Wyoming), invasive lake trout ( Salvelinus namaycush ) have been the target of a population suppression program for over two decades. For this form of management, the reproductive period is particularly important because fish migrate to and from spawning grounds. From 2011 to 2014, adult lake trout ( n = 317) in Yellowstone Lake were tracked using acoustic biotelemetry. After controlling for spatial and temporal dependency in the data, total abundance of unique individuals was estimated where migratory trajectories occurred at confirmed spawning sites. Aggregations and migratory trajectories were further estimated at locations where spawning had not previously been observed. Across years, the greatest number of individuals was observed along a migration corridor in the southwestern area of the lake. Novel strategies for analyzing acoustic telemetry data provided insights into the behavior of an invasive fish species. By betraying the positions of conspecifics, tagged fish revealed potentially important reproductive habitats and migration corridors that warranted further investigation as possible sites for population suppression.

Wyoming↗

USGS2024

Genome-wide association analysis of the resistance to infectious hematopoietic necrosis virus in two rainbow trout aquaculture lines confirms oligogenic architecture with several moderate effect quantitative trait loci

Infectious hematopoietic necrosis (IHN) is a disease of salmonid fish that is caused by the IHN virus (IHNV), which can cause substantial mortality and economic losses in rainbow trout aquaculture and fisheries enhancement hatchery programs. In a previous study on a commercial rainbow trout breeding line that has undergone selection, we found that genetic resistance to IHNV is controlled by the oligogenic inheritance of several moderate and many small effect quantitative trait loci (QTL). Here we used genome wide association analyses in two different commercial aquaculture lines that were naïve to previous exposure to IHNV to determine whether QTL were shared across lines, and to investigate whether there were major effect loci that were still segregating in the naïve lines. A total of 1,859 and 1,768 offspring from two commercial aquaculture strains were phenotyped for resistance to IHNV and genotyped with the rainbow trout Axiom 57K SNP array. Moderate heritability values (0.15–0.25) were estimated. Two statistical methods were used for genome wide association analyses in the two populations. No major QTL were detected despite the naïve status of the two lines. Further, our analyses confirmed an oligogenic architecture for genetic resistance to IHNV in rainbow trout. Overall, 17 QTL with notable effect (≥1.9% of the additive genetic variance) were detected in at least one of the two rainbow trout lines with at least one of the two statistical methods. Five of those QTL were mapped to overlapping or adjacent chromosomal regions in both lines, suggesting that some loci may be shared across commercial lines. Although some of the loci detected in this GWAS merit further investigation to better understand the biological basis of IHNV disease resistance across populations, the overall genetic architecture of IHNV resistance in the two rainbow trout lines suggests that genomic selection may be a more effective strategy for genetic improvement in this trait.

Frontiers in Genetics↗

USGS2017

Water-quality models to assess algal community dynamics, water quality, and fish habitat suitability for two agricultural land-use dominated lakes in Minnesota, 2014

Fish habitat can degrade in many lakes due to summer blue-green algal blooms. Predictive models are needed to better manage and mitigate loss of fish habitat due to these changes. The U.S. Geological Survey (USGS), in cooperation with the Minnesota Department of Natural Resources, developed predictive water-quality models for two agricultural land-use dominated lakes in Minnesota—Madison Lake and Pearl Lake, which are part of Minnesota’s sentinel lakes monitoring program—to assess algal community dynamics, water quality, and fish habitat suitability of these two lakes under recent (2014) meteorological conditions. The interaction of basin processes to these two lakes, through the delivery of nutrient loads, were simulated using CE-QUAL-W2, a carbon-based, laterally averaged, two-dimensional water-quality model that predicts distribution of temperature and oxygen from interactions between nutrient cycling, primary production, and trophic dynamics. The CE-QUAL-W2 models successfully predicted water temperature and dissolved oxygen on the basis of the two metrics of mean absolute error and root mean square error. For Madison Lake, the mean absolute error and root mean square error were 0.53 and 0.68 degree Celsius, respectively, for the vertical temperature profile comparisons; for Pearl Lake, the mean absolute error and root mean square error were 0.71 and 0.95 degree Celsius, respectively, for the vertical temperature profile comparisons. Temperature and dissolved oxygen were key metrics for calibration targets. These calibrated lake models also simulated algal community dynamics and water quality. The model simulations presented potential explanations for persistently large total phosphorus concentrations in Madison Lake, key differences in nutrient concentrations between these lakes, and summer blue-green algal bloom persistence. Fish habitat suitability simulations for cool-water and warm-water fish indicated that, in general, both lakes contained a large proportion of good-growth habitat and a sustained period of optimal growth habitat in the summer, without any periods of lethal oxythermal habitat. For Madison and Pearl Lakes, examples of important cool-water fish, particularly game fish, include northern pike ( Esox lucius ), walleye ( Sander vitreus ), and black crappie ( Pomoxis nigromaculatus ); examples of important warm-water fish include bluegill ( Lepomis macrochirus ), largemouth bass ( Micropterus salmoides ), and smallmouth bass ( Micropterus dolomieu ). Sensitivity analyses were completed to understand lake response effects through the use of controlled departures on certain calibrated model parameters and input nutrient loads. These sensitivity analyses also operated as land-use change scenarios because alterations in agricultural practices, for example, could potentially increase or decrease nutrient loads.

Minnesota↗