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The 3D Elevation Program: summary for Alaska

Elevation data are essential to a broad range of applications, including forest resources management, wildlife and habitat management, national security, recreation, and many others. For the State of Alaska, elevation data are critical for aviation navigation and safety, natural resources conservation, oil and gas resources, flood risk management, geologic resource assessment and hazards mitigation, forest resources management, and other business uses. Today, high-quality light detection and ranging (lidar) data and interferometric synthetic aperture radar (ifsar) are the primary sources for deriving elevation models and datasets. Federal, State, and local agencies work in partnership to (1) replace data, on a national basis, that are older and of lower quality and (2) provide coverage where publicly accessible data do not exist. Recent mapping information for the majority of land in Alaska is not available because clouds, smoke, and remoteness have hampered data collection. Lidar data have been collected only at selected coastal areas, cities, refuges, and parks. Within the last decade, ifsar technology has become the most effective tool for overcoming the challenges to acquiring elevation data for Alaska because this technology can penetrate clouds. State efforts for the collection of ifsar data are being coordinated through Alaska’s Statewide Digital Mapping Initiative (SDMI), a cooperative program implemented across six State of Alaska departments and the University of Alaska. Federal efforts are coordinated through the Alaska Mapping Executive Committee (AMEC), chaired by the Department of the Interior with membership from 15 Federal agencies and representatives from the State of Alaska. Coordination by SDMI and AMEC avoids duplication of effort and ensures a unified approach to consistent, statewide data acquisition; the enhancement of existing data; and support for emerging applications. The 3D Elevation Program (3DEP) initiative, managed by the U.S. Geological Survey (USGS), responds to the growing need for high-quality topographic data and a wide range of other three-dimensional representations of the Nation’s natural and constructed features.

Alaska

Climate sensitivity of water use by riparian woodlands at landscape scales

Semi‐arid riparian woodlands face threats from increasing extractive water demand and climate change in dryland landscapes worldwide. Improved landscape‐scale understanding of riparian woodland water use (evapotranspiration, ET) and its sensitivity to climate variables is needed to strategically manage water resources, as well as to create successful ecosystem conservation and restoration plans for potential climate futures. In this work, we assess the spatial and temporal variability of Cottonwood ( Populus fremontii )‐Willow ( Salix gooddingii ) riparian gallery woodland ET and its relationships to vegetation structure and climate variables for 80 km of the San Pedro River corridor in southeastern Arizona, USA, between 2014 and 2019. We use a novel combination of publicly available remote sensing, climate and hydrological datasets: cloud‐based Landsat thermal remote sensing data products for ET (Google Earth Engine EEFlux), Landsat multispectral imagery and field data‐based calibrations to vegetation structure (leaf‐area index, LAI), and open‐source climate and hydrological data. We show that at landscape scales, daily ET rates (6–10 mm day −1 ) and growing season ET totals (400–1,400 mm) matched rates of published field data, and modelled reach‐scale average LAI (0.80–1.70) matched lower ranges of published field data. Over 6 years, the spatial variability of total growing season ET (CV = 0.18) exceeded that of temporal variability (CV = 0.10), indicating the importance of reach‐scale vegetation and hydrological conditions for controlling ET dynamics. Responses of ET to climate differed between perennial and intermittent‐flow stream reaches. At perennial‐flow reaches, ET correlated significantly with temperature, whilst at intermittent‐flow sites ET correlated significantly with rainfall and stream discharge. Amongst reaches studied in detail, we found positive but differing logarithmic relationships between LAI and ET. By documenting patterns of high spatial variability of ET at basin scales, these results underscore the importance of accurately accounting for differences in woodland vegetation structure and hydrological conditions for assessing water‐use requirements. Results also suggest that the climate sensitivity of ET may be used as a remote indicator of subsurface water resources relative to vegetation demand, and an indicator for informing conservation management priorities.

Arizona

Turning setbacks into stepping-stones for growth in conservation paleobiology

Conservation paleobiology is a cross-disciplinary field that utilizes the geohistorical record of past life on Earth to inform present-day decisions in conservation and restoration and assist in planning for future natural resource management. However, information on how past ecosystems and species responded to environmental change over decadal to millennial timescales is rarely incorporated into conservation and restoration decision-making. To heighten awareness among conservation and restoration practitioners of the relevance of geohistorical data and to bridge the gap between research and implementation in conservation paleobiology, we proposed a Research Topic titled “ Integrating Conservation Biology and Paleobiology to Manage Biodiversity and Ecosystems in a Changing World ”. The 21 articles subsequently published demonstrate the diversity and breadth of geohistorical information available to resource management and the challenges of translating these results into conservation practice and policy. Here we discuss the lessons we learned from editing the Research Topic and suggest a pathway forward for conservation paleobiologists who aspire to generate actionable research results to solve current problems in biodiversity conservation and ecological restoration.

Frontiers in Ecology and Evolution

The 3D Elevation Program—Supporting Montana’s economy

Introduction Montana, America’s fourth largest State with an area of 147,040 square miles, is defined by its diverse terrain. The western two-fifths of the State falls within the Rocky Mountains and the eastern three-fifths is in the Great Plains. Because of its location along the Continental Divide, the rivers in Montana drain into either the Pacific Ocean or the Gulf of Mexico. Montana is often called the Treasure State due to its mineral wealth, which includes oil, gas, and coal, but the State’s primary economic activity is agriculture. Other economic activities include natural resources conservation, water supply and quality, infrastructure and construction management, flood risk management, and geologic resource assessment and hazard mitigation. Critical applications that meet the State’s management needs depend on light detection and ranging (lidar) data that provide a highly detailed three-dimensional (3D) model of the Earth’s surface and aboveground features.

Montana

National requirements for improved elevation data

This report presents the results of surveys, structured interviews, and workshops conducted to identify key national requirements for improved elevation data for the United States and its territories, including coastlines. Organizations also identified and reported the expected economic benefits that would be realized if their requirements for improved elevation were met (appendixes 1–3). This report describes the data collection methodology and summarizes the findings. Participating organizations included 34 Federal agencies, 50 States and two territories, and a sampling of local governments, tribes, and nongovernmental orgnizations. The nongovernmental organizations included The Nature Conservancy and a sampling of private sector businesses. These data were collected in 2010-2011 as part of the National Enhanced Elevation Assessment (NEEA), a study to identify program alternatives for better meeting the Nation’s elevation data needs. NEEA tasks included the collection of national elevation requirements; analysis of the benefits and costs of meeting these requirements; assessment of emerging elevation technologies, lifecycle data management needs, and costs for managing and distributing a national-scale dataset and derived products; and candidate national elevation program alternatives that balance costs and benefits in meeting the Nation’s elevation requirements. The NEEA was sponsored by the National Digital Elevation Program (NDEP), a government coordination body with the U.S. Geological Survey (USGS) as managing partner that includes the National Geospatial-Intelligence Agency (NGA), the Federal Emergency Management Agency (FEMA), the Natural Resources Conservation Service (NRCS), the U.S. Army Corps of Engineers (USACE), and the National Oceanic and Atmospheric Administration (NOAA), among the more than a dozen agencies and organizations. The term enhanced elevation data as used in this report refers broadly to three-dimensional measurements of land or submerged topography, built features, vegetation structure, and other landscape detail. Additional information about NEEA and its later use in the development of a 3D Elevation Program (3DEP) can be found at http://nationalmap.gov/3DEP/index.html.

Open-File Report

Assessing streams in the Chesapeake Bay Watershed to guide conservation and restoration activities

Freshwater streams in the Chesapeake Bay watershed are home to numerous aquatic organisms (like fish, amphibians, mussels, and insects) and provide drinking water and recreational opportunities to people living in or visiting the watershed. Land-use changes, such as urban development and increased activities in certain agricultural sectors, have degraded water quality and altered conditions in these streams, thereby affecting their health and function. The U.S. Geological Survey (USGS) is working with Federal, State, and local partners to develop modeled assessments of stream health in freshwater streams and rivers within the Chesapeake Bay watershed. The USGS compiled large datasets for multiple stream health indicators, including instream stressors (salinity, water temperature, physical habitat, and streambank erosion) and living resources (macroinvertebrates and fish communities; fig. 1). These datasets were used by USGS scientists to develop models to predict stream health conditions across the entire region, including areas with little or no monitoring data. Collectively, these stream health assessments provide critical information to natural resource managers who implement restoration and conservation activities in the region.

Chesapeake Bay Watershed

The 3D Elevation Program: summary for Alabama

Elevation data are essential to a broad range of applications, including forest resources management, wildlife and habitat management, national security, recreation, and many others. For the State of Alabama, elevation data are critical for flood risk management; infrastructure and construction management; wildfire management, planning, and response; natural resources conservation; geologic resource assessment and hazards mitigation; and other business uses. Today, high-density light detection and ranging (lidar) data are the primary sources for deriving elevation models and other datasets. Federal, State, and local agencies work in partnership to (1) replace data that are older and of lower quality and (2) provide coverage where publicly accessible data do not exist. A joint goal of State and Federal partners is to acquire consistent, statewide coverage to support existing and emerging applications enabled by lidar data. The National Enhanced Elevation Assessment evaluated multiple elevation data acquisition options to determine the optimal data quality and data replacement cycle relative to cost to meet the identified requirements of the user community. The evaluation demonstrated that lidar acquisition at quality level 2 for the conterminous United States and quality level 5 ifsar data for Alaska with a 6- to 10-year acquisition cycle provided the highest benefit/cost ratios. The new 3D Elevation Program (3DEP) initiative selected an 8-year acquisition cycle for the respective quality levels. 3DEP, managed by the U.S. Geological Survey (USGS), the Office of Management and Budget Circular A-16 lead agency for terrestrial elevation data, responds to the growing need for high-quality topographic data and a wide range of other 3D representations of the Nation’s natural and constructed features.

Alabama

The 3D Elevation Program: summary for Oregon

Elevation data are essential to a broad range of business uses, including forest resources management, wildlife and habitat management, national security, recreation, and many others. In the State of Oregon, elevation data are critical for river and stream resource management; forest resources management; water supply and quality; infrastructure and construction management; wildfire management, planning and response; natural resources conservation; and other business uses. Today, high-density light detection and ranging (lidar) data are the primary source for deriving elevation models and other datasets. The Oregon Lidar Consortium (OLC), led by the Oregon Department of Geology and Mineral Industries (DOGAMI), has developed partnerships with Federal, State, Tribal, and local agencies to acquire quality level 1 data in areas of shared interest. The goal of OLC partners is to acquire consistent, high-resolution and high-quality statewide coverage to support existing and emerging applications enabled by lidar data. The National Enhanced Elevation Assessment evaluated multiple elevation data acquisition options to determine the optimal data quality and data replacement cycle relative to cost to meet the identified requirements of the user community. The evaluation demonstrated that lidar acquisition at quality level 2 for the conterminous United States and quality level 5 ifsar data for Alaska with a 6- to 10-year acquisition cycle provided the highest benefit/cost ratios. The 3D Elevation Program (3DEP) initiative selected an 8-year acquisition cycle for the respective quality levels. 3DEP, managed by the U.S. Geological Survey (USGS), the Office of Management and Budget Circular A–16 lead agency for terrestrial elevation data, responds to the growing need for high-quality topographic data and a wide range of other 3D representations of the Nation’s natural and constructed features.

Oregon

Habitat drives dispersal and survival of translocated juvenile desert tortoises

1.In spite of growing reliance on translocations in wildlife conservation, translocation efficacy remains inconsistent. One factor that can contribute to failed translocations is releasing animals into poor quality or otherwise inadequate habitat. 2.Here we used a targeted approach to test the relationship of habitat features to post-translocation dispersal and survival of juvenile Mojave desert tortoises Gopherus agassizii . 3.We selected three habitat characteristics—rodent burrows, substrate texture (prevalence and size of rocks), and washes (ephemeral river beds)–that are tied to desert tortoise ecology. At the point of release, we documented rodent burrow abundance, substrate texture, and wash presence and analysed their relationship to maximum dispersal. We also documented relative use by each individual for each habitat characteristic and analysed their relationships with survival and fatal encounters with a predator in the first year after release. 4.In general, the presence of refugia or other areas that enabled animals to avoid detection, such as burrows and substrate, decreased overall mortality as well as predator-mediated mortality. The presence of washes and substrate that enhanced the tortoises’ ability to avoid detection also associated with reduced dispersal away from the release site. These results indicate an important role for all three measured habitat characteristics in driving dispersal, survival, or fatal encounters with a predator in the first year after translocation. 5. Synthesis and applications . Resource managers using translocations as a conservation tool should prioritize acquiring data linking habitat to fitness. In particular, for species that depend on avoiding detection, refuges such as burrows and habitat that improved concealment had notable ability to improve survival and dispersal. Our study on juvenile Mojave desert tortoises showed that refuge availability or the distributions of habitat appropriate for concealment are important considerations for identifying translocation sites for species highly dependent on crypsis, camouflage, or other forms of habitat matching.

Journal of Applied Ecology

Multiscale habitat use and selection in cooperatively breeding Micronesian kingfishers

Information about the interaction between behavior and landscape resources is key to directing conservation management for endangered species. We studied multi-scale occurrence, habitat use, and selection in a cooperatively breeding population of Micronesian kingfishers (Todiramphus cinnamominus) on the island of Pohnpei, Federated States of Micronesia. At the landscape level, point-transect surveys resulted in kingfisher detection frequencies that were higher than those reported in 1994, although they remained 15-40% lower than 1983 indices. Integration of spatially explicit vegetation information with survey results indicated that kingfisher detections were positively associated with the amount of wet forest and grass-urban vegetative cover, and they were negatively associated with agricultural forest, secondary vegetation, and upland forest cover types. We used radiotelemetry and remote sensing to evaluate habitat use by individual kingfishers at the home-range scale. A comparison of habitats in Micronesian kingfisher home ranges with those in randomly placed polygons illustrated that birds used more forested areas than were randomly available in the immediate surrounding area. Further, members of cooperatively breeding groups included more forest in their home ranges than birds in pair-breeding territories, and forested portions of study areas appeared to be saturated with territories. Together, these results suggested that forest habitats were limited for Micronesian kingfishers. Thus, protecting and managing forests is important for the restoration of Micronesian kingfishers to the island of Guam (United States Territory), where they are currently extirpated, as well as to maintaining kingfisher populations on the islands of Pohnpei and Palau. Results further indicated that limited forest resources may restrict dispersal opportunities and, therefore, play a role in delayed dispersal and cooperative behaviors in Micronesian kingfishers.

Journal of Wildlife Management

Leveraging local habitat suitability models to enhance restoration benefits for species of conservation concern

Efforts to restore habitats and conserve wildlife species face many challenges that are exacerbated by limited funding and resources. Habitat restoration actions are often conducted across a range of habitat conditions, with limited information available to predict potential outcomes among local sites and identify those that may lead to the greatest returns on investment. Using the Gunnison sage-grouse ( Centrocercus minimus ) as a case study, we leveraged existing resource selection function models to identify areas of high restoration potential across landscapes with variable habitat conditions and habitat-use responses. We also tested how this information could be used to improve restoration planning. We simulated change in model covariates across crucial habitats for a suite of restoration actions to generate heatmaps of relative habitat suitability improvement potential, then assessed the degree to which use of these heatmaps to guide placement of restoration actions could improve suitability outcomes. We also simulated new or worsening plant invasions and projected the resulting loss or degradation of habitats across space. We found substantial spatial variation in projected changes to habitat suitability and new habitat created, both across and among crucial habitats. Use of our heatmaps to target placement of restoration actions improved habitat suitability nearly fourfold and increased new habitat created more than 15-fold, compared to placements unguided by heatmaps. Our decision-support products identified areas of high restoration potential across landscapes with variable habitat conditions and habitat-use responses. We demonstrate their utility for strategic targeting of habitat restoration actions, facilitating optimal allocation of limited management resources to benefit species of conservation concern.

Biodiversity and Conservation

Pesticide concentrations in frog tissue and wetland habitats in alandscape dominated by agriculture

Habitat loss and exposure to pesticides are likely primary factors contributing to amphibian decline in agricultural landscapes. Conservation efforts have attempted to restore wetlands lost through landscape modifications to reduce contaminant loads in surface waters and providing quality habitat to wildlife. The benefits of this increased wetland area, perhaps especially for amphibians, may be negated if habitat quality is insufficient to support persistent populations. We examined the presence of pesticides and nutrients in water and sediment as indicators of habitat quality and assessed the bioaccumulation of pesticides in the tissue of two native amphibian species Pseudacris maculata (chorus frogs) and Lithobates pipiens (leopard frogs) at six wetlands (3 restored and 3 reference) in Iowa, USA. Restored wetlands are positioned on the landscape to receive subsurface tile drainage water while reference wetlands receive water from overland run-off and shallow groundwater sources. Concentrations of the pesticides frequently detected in water and sediment samples were not different between wetland types. The median concentration of atrazine in surface water was 0.2 μg/L. Reproductive abnormalities in leopard frogs have been observed in other studies at these concentrations. Nutrient concentrations were higher in the restored wetlands but lower than concentrations thought lethal to frogs. Complex mixtures of pesticides including up to 8 fungicides, some previously unreported in tissue, were detected with concentrations ranging from 0.08 to 1500 μg/kg wet weight. No significant differences in pesticide concentrations were observed between species, although concentrations tended to be higher in leopard frogs compared to chorus frogs, possibly because of differences in life histories. Our results provide information on habitat quality in restored wetlands that will assist state and federal agencies, landowners, and resource managers in identifying and implementing conservation and management actions for these and similar wetlands in agriculturally dominated landscapes.

Iowa

Estimating agricultural irrigation water consumption for the High Plains aquifer region with integrated energy- and water-balance evapotranspiration modeling approaches

Estimation of irrigation water use provides essential information for the management and conservation of agricultural water resources. Conventionally, water use data are created based on reports and surveys from water users, whereas manual records may not be complete due to lacking flow meters, measurement gaps, inconsistent methods across regions, and time- and cost-consuming data processing. Alternatively, spatially explicit estimation of irrigation water use can be conducted efficiently using remote sensing evapotranspiration (ET) modeling approaches. In this study, we created a gridded blue water evapotranspiration (BWET) dataset to estimate historical irrigation water consumption (1986 – 2020) in the croplands across the United States High Plains aquifer region. The BWET data were generated by integrating an energy-balance ET model [Operational Simplified Surface Energy Balance model (SSEBop)] and a water-balance ET model [Vegetation ET model (VegET)]. BWET in croplands indicates crop consumptive use of irrigation water extracted from surface water and groundwater resources. The BWET estimates were compared with reported irrigation water use data for all counties within the aquifer region. The results revealed high agreement between growing season (May – September) BWET and annual water withdrawal at county level. Specifically, correlation coefficients of volumetric BWET and water withdrawal were 0.90 and 0.96, respectively, for the entire aquifer region and western Kansas. The timeseries of BWET and water withdrawal showed similar temporal trends and high covariations. The BWET estimates were systematically lower than the water withdrawal measurements, which was primarily attributed to blue water losses in the irrigation system. The irrigation efficiency, calculated as the ratio of BWET to water withdrawal depth, was 0.57 and 0.74 for the entire aquifer region and western Kansas, respectively. This study demonstrates the capability of using satellite-based ET models (e.g., SSEBop and VegET) to efficiently estimate crop water consumption and evaluate irrigation efficiency at landscape, county, and regional scales.

Colorado, Kansas, Nebraska, New Mexico, Oklahoma,

A targeted approach for mapping groundwater discharge to surface water and fish thermal refuge in four Lake Ontario tributaries

The duration, magnitude, and frequency of heatwaves are predicted to increase in the coming decades, a combination that can reduce the survival of many fish species. Across the world, there is broad interest in identifying thermal refuge for heat-intolerant fish species and exploring opportunities to enhance or protect these areas. Because deeper groundwater maintains a relatively constant temperature, groundwater-influenced areas along streams can provide cool-water refuge for fish during periods of extreme heat. A targeted approach was developed for identifying existing cold-water zones and areas of substantial groundwater discharge in four high priority Lake Ontario tributaries. Our approach included: (1) predicting where groundwater discharge is most likely with a simple geospatial model and (2) using model predictions to select field sites for intensive high-resolution study, including ground-based mapping of groundwater features (springs, seeps, tributaries) as well as drone-based optical and thermal infrared surveys. Results from field sites were used to both verify model performance and map different types and aerial extents of thermal anomalies. Geospatial modelling successfully predicted regions of widespread groundwater upwelling, later verified and mapped by field and drone surveys. Comparison of model and field survey results further highlighted specific geospatial layers, such as soil/bedrock types and topographic wetness index, as being particularly useful for predicting groundwater influence on streams in the study area. In addition, a comparison of geospatial model results with a model of fish abundances along the studied streams showed significant positive correlations for many heat-intolerant fish species over a wide geographic area. The approach developed in this study can be applied to other watersheds to highlight areas of probable groundwater discharge and could be used by fishery and water resource managers to support cold-water fish habitat management decision-making and resource conservation.

New York

Selenium in aquatic biota inhabiting agricultural drains in the Salton Sea Basin, California

Resource managers are concerned that water conservation practices in irrigated farmlands along the southern border of the Salton Sea, Imperial County, California, could increase selenium concentrations in agricultural drainwater and harm the desert pupfish ( Cyprinodon macularius ), a federally protected endangered species. As part of a broader attempt to address this concern, we conducted a 3-year investigation to collect baseline information on selenium concentrations in seven agricultural drains inhabited by pupfish. We collected water, sediment, selected aquatic food-chain taxa (particulate organic detritus, filamentous algae, net plankton, and midge [Chironomidae] larvae), and two poeciliid fishes (western mosquitofish Gambusia affinis and sailfin molly Poecilia latipinna ) for selenium determinations. The two fish species served as ecological surrogates for pupfish, which we were not permitted to sacrifice. Dissolved selenium ranged from 0.70 to 32.8 μg/L, with selenate as the major constituent. Total selenium concentrations in other environmental matrices varied widely among drains, with one drain (Trifolium 18) exhibiting especially high concentrations in detritus, 5.98–58.0 μg Se/g; midge larvae, 12.7–50.6 μg Se/g; mosquitofish, 13.2–20.2 μg Se/g; and mollies, 12.8–30.4 μg Se/g (all tissue concentrations are based on dry weights). Although toxic thresholds for selenium in fishes from the Salton Sea are still poorly understood, available evidence suggests that ambient concentrations of this element may not be sufficiently elevated to adversely affect reproductive success and survival in selenium-tolerant poeciliids and pupfish.

Environmental Monitoring and Assessment

Societal values of inland fishes

a. Aim: To demonstrate the societal values of inland fishes through nine services provided by inland fishes. Each service is defined, key stakeholders identified, and threats enumerated. Diverse case studies (geography, taxonomy, fishery-type) provide examples to highlight the societal values around the world. b. Main concepts: Nine societal services of inland fishes – 1. Livelihoods and subsistence income; 2. Commercial income; 3. Food and nutrition; 4. Recreational services; 5. Cultural services; 6. Educational and scientific opportunities within fisheries; 7. Biodiversity and ecosystem function; 8. Regulation and indicator of freshwater quality ; and 9. Regulation of freshwater quantity and natural flow regimes. c. Conclusion/outlook: Inland fishes have immense social, economic, and ecological importance. Freshwater ecosystems face a diverse array of pressures that threaten the fulfillment of societal services. Addressing key knowledge gaps can assist with sustainable management and conservation of these important resources.

Book chapter

Optimizing per vessel hour capture efficiency for rare, heterogeneously distributed fishes: Invasive grass carp Ctenopharyngodon idella in the Sandusky River

Natural resources management is often concerned with conserving rare-native or controlling rare-invasive fishes. Informing and assessing conservation and control efforts frequently requires information from captures. When little is understood about spatial and temporal fish distributions, captures can be infrequent and costly. If successful management depends on effective management response, optimizing for efficiency may be the difference between success and failure. We compared per vessel hour capture efficiencies for invasive grass carp ( Ctenopharyngodon idella ) between two methods: electrofishing-only (electrofishing) and in combination with a trammel net (combination). Capture and effort information including 174 captures from 1853 capture attempts from 1706 total hours of effort in the Sandusky River, OH, USA from 2020–2023 was used to fit a generalized linear model. Captures were allowed to vary by river kilometer, month, and year to account for unequal capture rates and effort. Captures were offset by total vessel hours or the count of independent efforts to compare methods that prioritize detection at a single location (e.g., combination) to methods that prioritize exploiting more locations (e.g., electrofishing). Including trammel nets was intended to increase single site detection, but we found that electrofishing-only was at least 2.4x more efficient (catch per vessel hour) than when combined with a trammel net with no significant difference in catch per removal effort. Complex methods intended to increase single site detection may reduce the number of efforts completed. Therefore, overall capture efficiency and total capture numbers for rare fish may be increased through methods that prioritize per-hour efficiency.

Ohio

Genetic analysis of Missouri’s Topeka Shiners with implications for the propagation of understudied small-bodied freshwater fishes

Objective Best practices for conservation hatcheries to conserve genetic diversity and minimize adaptation to captivity have been established for decades, but how to apply them is not clear in every circumstance. As a growing number of aquatic species are propagated in captive settings, addressing the fit of these practices to each system will help managers operate optimally while conserving hatchery resources. Small-bodied freshwater fish present a unique set of traits compared with species that are typically considered for propagation (i.e., salmonids), including a patchy distribution within a watercourse. We examine the propagation and reintroduction program that supports the Topeka Shiner Miniellus topeka , an endangered minnow in the Midwestern USA. Methods We genotyped shiners from groups with different histories (two reintroduced, three captive, and two remnant populations) at 11 microsatellite loci and compared genetic diversity, genetic structure, effective population size, and evidence of population bottlenecks. We also looked at the breeding structure by genetically assigning hatchery-reared young ( n = 148) to candidate parents. Results We documented high levels of genetic structure among the two natural populations in our study. We also noted lower diversity and evidence of bottlenecks in hatchery-reared groups. However, hatcheries may support sufficient (>50) effective population sizes with minimal space. Conclusions Hatcheries may avoid bottlenecks in other small-bodied freshwater fish by collecting wild fish from a broad area and frequently incorporating them into the captive population. Within the hatchery, we emphasize the need to reduce generational overlap by stocking all production fish and/or subdividing the captive populations.

Missouri