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At least 253 records · Page 14Linked to original sources
USGS2007

Potential effects of regional pumpage on groundwater age distribution

Groundwater ages estimated from environmental tracers can help calibrate groundwater flow models. Groundwater age represents a mixture of traveltimes, with the distribution of ages determined by the detailed structure of the flow field, which can be prone to significant transient variability. Effects of pumping on age distribution were assessed using direct age simulation in a hypothetical layered aquifer system. A steady state predevelopment age distribution was computed first. A well field was then introduced, and pumpage caused leakage into the confined aquifer of older water from an overlying confining unit. Large changes in simulated groundwater ages occurred in both the aquifer and the confining unit at high pumping rates, and the effects propagated a substantial distance downgradient from the wells. The range and variance of ages contributing to the well increased substantially during pumping. The results suggest that the groundwater age distribution in developed aquifers may be affected by transient leakage from low‐permeability material, such as confining units, under certain hydrogeologic conditions.

Water Resources Research↗
USGS1989

An exact anelastic model for the free-surface reflection of P and S-I waves

Exact anelastic solutions incorporating inhomogeneous waves are used to model numerically S -I and P waves incident on the free surface of a low-loss anelastic half-space. Anelastic free-surface reflection coefficients are computed for the volumetric strain and displacement components of inhomogeneous wave fields. For the problem of an incident homogeneous S -I wave in Pierre shale, the largest strain and displacement amplitudes for the reflected P wave occur at angles of incidence for which the particle motion for the reflected inhomogeneous P wave is elliptical (minor/major axis = 0.6), the specific absorption ( Q P −1 ) is greater (300 per cent) and the velocity is less (25 per cent) than those for a corresponding homogeneous P wave, the direction of phase propagation is not parallel to the free surface, and the amplitude of the wave shows a significant increase with depth (6 per cent in one wavelength). Energy reflection coefficients computed for this low-loss anelastic model show that energy flow due to interaction of the incident and reflected waves reach maxima (30 per cent of the incident energy) near large but nongrazing angles of incidence. For the problem of an incident homogeneous P wave in Pierre shale, the inhomogeneity of the reflected S wave is shown not to contribute to significant variations in wave field characteristics over those that would be expected for a homogeneous wave.

Bulletin of the Seismological Society of America↗
USGS2021

Upwelling and the persistence of coral-reef frameworks in the eastern tropical Pacific

In an era of global change, the fate and form of reef habitats will depend on shifting assemblages of organisms and their responses to multiple stressors. Multiphyletic assemblages of calcifying and bioeroding species contribute to a dynamic balance between constructive and erosive processes, and reef-framework growth occurs only when calcium-carbonate deposition exceeds erosion. Each contributing species exhibits a unique combination of environmental sensitivities, trophic needs, and competitive abilities, making the net outcome of their habitat-altering behavior difficult to predict. In this study, standardized blocks of clean, massive Porites were placed at six reef sites in the eastern tropical Pacific, in the strongly and more-weakly upwelling Gulfs of Panamá (GoP) and Chiriquí (GoC), respectively. Sites were chosen to characterize the unique thermal and carbonate-chemistry conditions of each gulf. Satellite products were used to examine differences in sea-surface productivity, and surveys were conducted to quantify the abundance of important grazing taxa. After two years in situ, the Porites blocks were collected and scanned using high-resolution computed tomography to volumetrically quantify both endolithic and epilithic habitat alteration. Scan-volumes were further classified into functional groups according to morphology to quantify external bioerosion by fish and sea urchins, as well as the calcifying and bioeroding activity of crustose coralline algae, scleractinian corals, mollusks, annelids, and barnacles. The GoP, which has higher productivity, cooler temperatures, and periodically lower pH conditions, had higher rates of macroboring, but also higher rates of calcification. These unexpectedly higher rates of calcification in the GoP were a result of high recruitment of suspension-feeding taxa, particularly barnacles and vermiform fauna that have poor reef-forming potential. External bioerosion by grazers was the dominant process influencing these dead coral substrates across both gulfs, contributing to higher rates of net erosion in the GoC and underscoring the important roles that urchins and fish play in not just removing algae on reefs, but also eroding reef habitat. Ultimately these findings reveal that the trophic requirements of habitat-altering taxa are closely tied to reef-framework stability, and that environmental conditions conducive to carbonate precipitation are not necessarily those that will lead to habitat persistence.

Ecological Monographs↗
USGS2016

Methods for estimating peak-flow frequencies at ungaged sites in Montana based on data through water year 2011: Chapter F in Montana StreamStats

The U.S. Geological Survey (USGS), in cooperation with the Montana Department of Natural Resources and Conservation, completed a study to update methods for estimating peak-flow frequencies at ungaged sites in Montana based on peak-flow data at streamflow-gaging stations through water year 2011. The methods allow estimation of peak-flow frequencies (that is, peak-flow magnitudes, in cubic feet per second, associated with annual exceedance probabilities of 66.7, 50, 42.9, 20, 10, 4, 2, 1, 0.5, and 0.2 percent) at ungaged sites. The annual exceedance probabilities correspond to 1.5-, 2-, 2.33-, 5-, 10-, 25-, 50-, 100-, 200-, and 500-year recurrence intervals, respectively. Regional regression analysis is a primary focus of Chapter F of this Scientific Investigations Report, and regression equations for estimating peak-flow frequencies at ungaged sites in eight hydrologic regions in Montana are presented. The regression equations are based on analysis of peak-flow frequencies and basin characteristics at 537 streamflow-gaging stations in or near Montana and were developed using generalized least squares regression or weighted least squares regression. All of the data used in calculating basin characteristics that were included as explanatory variables in the regression equations were developed for and are available through the USGS StreamStats application (http://water.usgs.gov/osw/streamstats/) for Montana. StreamStats is a Web-based geographic information system application that was created by the USGS to provide users with access to an assortment of analytical tools that are useful for water-resource planning and management. The primary purpose of the Montana StreamStats application is to provide estimates of basin characteristics and streamflow characteristics for user-selected ungaged sites on Montana streams. The regional regression equations presented in this report chapter can be conveniently solved using the Montana StreamStats application. Selected results from this study were compared with results of previous studies. For most hydrologic regions, the regression equations reported for this study had lower mean standard errors of prediction (in percent) than the previously reported regression equations for Montana. The equations presented for this study are considered to be an improvement on the previously reported equations primarily because this study (1) included 13 more years of peak-flow data; (2) included 35 more streamflow-gaging stations than previous studies; (3) used a detailed geographic information system (GIS)-based definition of the regulation status of streamflow-gaging stations, which allowed better determination of the unregulated peak-flow records that are appropriate for use in the regional regression analysis; (4) included advancements in GIS and remote-sensing technologies, which allowed more convenient calculation of basin characteristics and investigation of many more candidate basin characteristics; and (5) included advancements in computational and analytical methods, which allowed more thorough and consistent data analysis. This report chapter also presents other methods for estimating peak-flow frequencies at ungaged sites. Two methods for estimating peak-flow frequencies at ungaged sites located on the same streams as streamflow-gaging stations are described. Additionally, envelope curves relating maximum recorded annual peak flows to contributing drainage area for each of the eight hydrologic regions in Montana are presented and compared to a national envelope curve. In addition to providing general information on characteristics of large peak flows, the regional envelope curves can be used to assess the reasonableness of peak-flow frequency estimates determined using the regression equations.

Montana↗
USGS1976

Oil spills, 1971-75, Gulf of Mexico outer continental shelf

Oil spillage connected with federally supervised drilling and production activities has been a matter of wide public concern. In its supervision of mineral-resource development on the Outer Continental Shelf (OCS), the U.S. Geological Survey is responsible for the day-to-day inspection and monitoring of OCS oil and gas operations. During these activities, the U.S. Geological Survey records and investigates hydrocarbon discharges resulting from such operations. Beginning in 1971, all spills have been recorded, and a computer file has been maintained on all spills of 1 barrel or more. The total Gulf of Mexico OCS oil spillage recorded during January 1, 1971-December 31, 1975, amounted to 51,421 barrels. Production during that period amounted to 35,219 barrels per barrel spilled. In all, 5,857 spills were recorded, but 85.5 percent of the total spill volume was contributed by just 5 incidents. The environmental effect of these incidents apparently was minimal and of short duration. No spills of more than 50 barrels resulted from drilling operations during the period. The only spillage resulting from blowouts was caused by nondrilling incidents, including completion, production, and workover. The amount of oil discharged from spills of less than 50 barrels decreased by more than half between 1971 and 1975. The improvement reflects changes in the operating philosophy of the offshore industry, tightening of U.S. Geological Survey operating orders, and substantial increases in the inspection force. Most production-platform spills involve failures in the sump system, the separator system, or other hydrocarbon-handling equipment; improved sump-system designs and better high-low-level controls have reduced both the number and the volume of spills. Pipeline and pump spills also declined significantly, although the decline appears less attributable to revisions in OCS operating requirements. No operator consistently contributed a disproportionate amount of spillage. Most of the platforms having production spills had only one spill during the period. Of the 304 platforms having incidents, 255 had 2 spills or less and 188 had only 1 spill. Comparison of the volume spilled with the volume produced for Gulf of Mexico OCS operations during 1971-75 results in a spillage rate of 0.0028 percent. Spillage from tankers is estimated to be greater. The OCS drilling and production spillage rate is not expected to increase during exploration and development of the frontier areas.

Circular↗
USGS1997

Geochemistry and microbiology of iron-related well-screen encrustation and aquifer biofouling in Suffolk County, Long Island, New York

Iron-related well-screen encrustation and aquifer biofouling has decreased the specific capacity of several production wells in Suffolk County, N.Y., and has forced the Suffolk County Water Authority to adopt a costly well-reconditioning and replacement program. The specific-capacity declines are the result of the precipitation of iron oxyhydroxides and the growth of iron bacteria on the well screens and in the pore spaces of the surrounding formation. Mineralogic and chemical analyses indicate that the inorganic part of the encrusting material consists primarily of amorphous ferric hydroxide (Fe(OH)3 ); minor components of the material include goethite (FeOOH), hematite (Fe2 O 3 ), and quartz (SiO 2 ). The weight percent of ferric hydroxide in the material ranged from 32.3 to 98.6 percent and averaged 64.3 percent. Equilibrium modeling indicated that during pumping the well waters were supersaturated with respect to goethite, hematite, magnetite, and quartz and were under-saturated with respect to ferric hydroxide. Theoretical Eh values computed for the ferrous/ferric-iron redox couple and the oxygen/water redox couple averaged 390 millivolts and 810 millivolts, respectively, indicating that the waters were in a state of redox disequilibrium. The disequilibrium condition arises from the mixing of ground water with a low dissolved-oxygen concentration with oxygenated ground water during operation of the well. The low pH of the ground water contributes to the disequilibrium condition by slowing the rate of iron oxidation after the introduction of oxygen. Chemical and mineralogical data indicate that most of the encrusting material in the wells was deposited while the wells were shut down, probably in response to the use of treated water of higher pH to keep pump turbines wet while the wells were not in operation; the increased pH of water in the static water column increases the rate of ferrous-iron oxidation and causes the well water to become increasingly saturated with respect to ferric hydroxide. The median half-time of oxidation in samples of untreated ground water (pH 4-5) was 4.19 days, whereas the average half-time of oxidation in treated water (pH 7-8) was 11.9 minutes Equilibrium modeling indicated that treated waters generally were supersaturated with respect to ferric hydroxide, whereas untreated well waters were not. Field and laboratory data indicate that iron bacteria play an important role in the encrustation and biofouling process in Suffolk County. Filamentous iron bacteria were common in the affected wells. The most common species was Gallionella ferruginea, an effective biofouling agent that prefers water with low, but detectable, dissolved-oxygen concentrations and high dissolved-iron concentrations; this species was more common in biofilm samples from the Magothy aquifer than in those from the upper glacial aquifer. Iron bacteria also were found in sediment cores from several locations in the aquifer and in drilling water. Lignite could act as a carbon source for heterotrophic iron bacteria, which could accelerate the formation of iron-bacteria biofilms in wells screened in some parts of the Magothy aquifer. Iron-bacteria biofilms alter the chemistry of well water by removing iron, manganese, and sulfate from solution and by increasing the pH. Sulfur-reducing bacteria and iron-sulfide mineral phases were observed in some samples of encrusting material, indicating that these bacteria could contribute to well-screen encrustation in some geochemical environments.

Water-Resources Investigations Report↗
USGS2022

Landsat data ecosystem case study: Actor perceptions of the use and value of landsat

It is well-known that Earth observation (EO) data plays a critical role in scientific understanding about the global environment. There is also growing support for the use of EO data to provide context-specific insights, with significant implications for their use in decision support systems. Technological development over recent years, including cloud computing infrastructure, machine learning techniques, and rapid expansion of the velocity, volume, and variety of space-borne data sources, offer huge potential to provide solutions to the myriad environmental problems facing society and the planet. The USGS/NASA Landsat Program, the longest continuously gathered source of land surface data, has played a central role in our understanding of environmental change, particularly for its contribution of longitudinal products that offer greater context for present research and decision support activities. The challenge facing the Landsat and EO data community, however, now lies in moving beyond context-specific knowledge generation to translating such knowledge into tangible value for society. Drawing from an open data ecosystem framework and qualitative social science methods, we map the Landsat data ecosystem (LDE) and the relationships linking multiple actors responsible for processing, indexing, analyzing, synthesizing, and translating raw Landsat data into information that is useful, useable, and used by end users in particular social-environmental contexts. Both the role of Big Data and associated technologies are discussed as they relate to the ultimate use of Landsat-derived information products to guide decision-making, and key data ecosystem characteristics that shape the likelihood of these products’ use are highlighted.

Frontiers in Environmental Science↗
USGS2009

Simulations of Groundwater Flow and Particle Tracking Analysis in the Area Contributing Recharge to a Public-Supply Well near Tampa, Florida, 2002-05

Shallow ground water in the north-central Tampa Bay region, Florida, is affected by elevated nitrate concentrations, the presence of volatile organic compounds, and pesticides as a result of groundwater development and intensive urban land use. The region relies primarily on groundwater for drinking-water supplies. Sustainability of groundwater quality for public supply requires monitoring and understanding of the mechanisms controlling the vulnerability of public-supply wells to contamination. A single public-supply well was selected for intensive study based on the need to evaluate the dominant processes affecting the vulnerability of public-supply wells in the Upper Floridan aquifer in the City of Temple Terrace near Tampa, Florida, and the presence of a variety of chemical constituents in water from the well. A network of 29 monitoring wells was installed, and water and sediment samples were collected within the area contributing recharge to the selected public-supply well to support a detailed analysis of physical and chemical conditions and processes affecting the water chemistry in the well. A three-dimensional, steady-state groundwater flow model was developed to evaluate the age of groundwater reaching the well and to test hypotheses on the vulnerability of the well to nonpoint source input of nitrate. Particle tracking data were used to calculate environmental tracer concentrations of tritium and sulfur hexafluoride and to calibrate traveltimes and compute flow paths and advective travel times in the model area. The traveltime of particles reaching the selected public-supply well ranged from less than 1 day to 127.0 years, with a median of 13.1 years; nearly 45 percent of the simulated particle ages were less than about 10 years. Nitrate concentrations, derived primarily from residential/commercial fertilizer use and atmospheric deposition, were highest (2.4 and 6.11 milligrams per liter as nitrogen, median and maximum, respectively) in shallow groundwater from the surficial aquifer system and lowest (less than the detection level of 0.06 milligram per liter) in the deeper Upper Floridan aquifer. Denitrification occurred near the interface of the surficial aquifer system and the underlying intermediate confining unit, within the intermediate confining unit, and within the Upper Floridan aquifer because of reducing conditions in this part of the flow system. However, simulations indicate that the rapid movement of water from the surficial aquifer system to the selected public-supply well through karst features (sinkholes) and conduit layers that bypass the denitrifying zones (short-circuits), coupled with high pumping rates, allow nitrate to reach the selected public-supply well in concentrations that resemble those of the overlying surficial aquifer system. Water from the surficial aquifer system with elevated concentrations of nitrate and low concentrations of some volatile organic compounds and pesticides is expected to continue moving into the selected public-supply well, because calculated flux-weighted concentrations indicate the proportion of young affected water contributing to the well is likely to remain relatively stable over time. The calculated nitrate concentration in the selected public-supply well indicates a lag of 1 to 10 years between peak concentrations of nonpoint source contaminants in recharge and appearance in the well.

Scientific Investigations Report↗
USGS2020

OpenCLC: An open-source software tool for similarity assessment of linear hydrographic features

The National Hydrography Dataset (NHD) is a foundational geospatial data source in the United States that enables extensive and diverse environmental research and supports decision-making in numerous contexts. However, the NHD requires regular validation and update given possible inconsistent initial collection and hydrographic changes. Furthermore, systems or tools that use NHD data must manage regular updates that occur within the high-resolution version of the NHD (NHD HR). This research contributes to filling this gap by establishing an open-source software tool named OpenCLC, which automatically identifies matching and mismatching line features between two sets of hydrographic flowlines. Aside from identifying differences among two version of NHD lines, results can be applied to improve the quality of NHD HR content. OpenCLC significantly outperforms the best available commercial off-the-shelf software in computational scalability, and it is made widely available as part of the CyberGIS Toolkit to benefit broad environmental and geospatial science communities.

SoftwareX↗
USGS2026

Water-withdrawal and groundwater-level fluctuations, physical and infiltration characteristics of Ohio River sediment, and isotope-based estimates of water sources relative to a riverbank filtration system in an alluvial aquifer, Louisville, Kentucky, 2000–20

The U.S. Geological Survey and the Louisville Water Company, from 2000 to 2020, cooperatively investigated physical and hydrologic conditions in the Ohio River alluvial aquifer and adjacent riverbed sediments in the northeast part of Louisville, Kentucky, to increase knowledge of processes affecting water sources to collector wells during operation of a riverbank filtration system (RBF). The RBF, in 2020, included an initial collector well (CW1) completed in 1999 and a tunnel and collector well system (TCWS) composed of four collector wells (CW2–CW5) completed in late 2010 that were connected by a tunnel that routed water to a pumping station and a treatment plant. Daily mean water-withdrawal rates typically ranged from about 10.4 to 20.7 million gallons per day (Mgal/d) from 2005 to 2007, then were cyclic from 2008 to 2010 and ranged from as low as about 9 to 13 Mgal/d in winter-spring months up to about 19 to 20 Mgal/d in summer-autumn months. From 2011 through 2017, peak daily mean water-withdrawal rates from CW2–CW5 fluctuated between winter-spring lows of about 20–30 Mgal/d to summer-autumn peak rates of about 41.6 Mgal/d in 2013 to about 48.2 Mgal/d in 2012. From 2017 to 2020, TCWS peak daily mean water-withdrawal rates decreased from about 45.7 Mgal/d in 2017 to about 37.5 Mgal/d in 2020 and peak daily mean rates from CW1 ranged from about 20.7 Mgal/d in 2020 to about 21.6 Mgal/d in 2018. Periods in 2019–20 with tunnel pumping station daily mean water-withdrawal rates smaller than about 30 Mgal/d had generally stable water levels in CW2 and indicated the sustainable yield of the TCWS collector wells under the prevailing hydrologic conditions. Drawdown during July–August of 2008 and 2009 was associated with CW1, the sole operating collector well. Groundwater-flow directions outside the CW1 cone of depression during July–August of 2008 and 2009 were from areas near the alluvial valley margin toward the Ohio River and in 2009 toward Harrods Creek. Collector wells CW2 through CW5 derived water during 2011–19 surveys from surface-water infiltration, as indicated by drawdown that extended beneath the Ohio River and Harrods Creek. Increases in drawdown toward the alluvial valley margins in July–August of 2013 and 2015, compared with July 2011, indicated less available recharge from those flow directions and decreased yield of groundwater from the aquifer after progressively longer TCWS water withdrawals. Drawdown at CW2–CW5 and at observation wells between them lessened in October 2019 and indicated that onshore groundwater levels can recover when collector well withdrawals decrease. Overlapping cones of depression in 2011–15 potentiometric surfaces centered around CW2, CW3, CW4, and CW5, and drawdown along divides between those wells indicated well interference between collector wells. Well-interference effects increased during 2013 and 2015 survey periods, despite decreased water-withdrawal rates compared with July 2011, and expanded to include CW1 when its use resumed. Groundwater-level fluctuations in observation wells near the Ohio River were consistent with gradual depletion of groundwater yield during tunnel pumping station operation at river elevations of about 420 feet above the National Geodetic Vertical Datum of 1929 (NGVD 29) and enhanced recharge of the aquifer when river elevations were above flood stage of about 430 feet above NGVD 29. Groundwater-level declines in observation wells near the Ohio River were most apparent in summer and some autumn months between 2012 and 2017 during periods when tunnel pumping station mean daily water-withdrawal rates were about 35 Mgal/d or more. Periods of relatively stable groundwater levels during 2019–20 in observation wells between CW2–CW5, when tunnel pumping station water-withdrawal rates were about 30–33 Mgal/d or less, also indicated that the prevailing sustainable yield was about 30 Mgal/d or less. Wells associated with CW3 and CW4 had the largest increases in slopes of best-fit lines relating water-level difference to water-withdrawal rate between 2012 and 2020, an indication of decreased efficiencies of those wells to supply water or of changes in groundwater yield around the well. Increased slopes of best-fit lines relating water-level difference to water-withdrawal rate from 2019 to 2020, when groundwater levels were otherwise relatively stable, also indicated that the specific capacity of one or more TCWS collector wells may have declined during that period. Riverbed surface elevation, roughness, and hardness changes between hydroacoustic surveys indicated active accretion and erosion of bed sediment offshore from the riverbank filtration system in 2002–4. Riverbed hydraulic conductivity computed from 2013 to 2015 in tests at 11 sites ranged from 0.2 to 230 feet per day. Ten temporary piezometer sites with adjacent operating collector wells had drawdowns that ranged from about 4 to 11.7 feet and hammer blows greater than or equal to 49 counts, which indicated a relatively great density of alluvial sediments and the potential for diminished riverbed infiltration rates. Contributions of Ohio River infiltration to collector wells estimated from deuterium and oxygen-18 isotopic ratios in representative Ohio River and groundwater samples were considerably larger in warmer months than cooler months and ranged from 80–90 percent in CW1–CW5 in May 2020 to 100 percent in May 2019 at CW2, CW4, and CW5. Groundwater contributions to water withdrawals by collector wells increased in cooler autumn months and ranged from 40 percent at CW3 and CW5 in November 2020 to 70 percent at CW2, CW4, and CW5 in November–December 2019. November 2019 and November 2020 isotopic compositions of water from the collector wells had enriched deuterium and oxygen-18 isotopic ratios consistent with mixtures of evaporation-modified water from the Ohio River and meteoric-origin groundwater.

Indiana, Kentucky↗
USGS2019

Significant seismic behavior features of two tall buildings inferred from response records

In this paper, recent studies of recorded responses of behavior and performances of two instrumented tall buildings subjected to long-period motions from events that originate at far distances (e.g. 100-800km) are presented. Significant results indicate that (a) computed average drift ratios are substantial (~0.5%), and (b) there is permanent shift of fundamental frequencies for a tall building which was hundreds of km away from the epicenter of a large (M9.0) earthquake. In addition, (c) there are significant local site effects and basin effects, some causing resonance of buildings, (d) beating effect are observed particularly in elongated responses whereby elongated responses can contribute to low-cycle fatigue, and significantly, and (e) identified critical viscous damping percentages are low (<3%). This is consistent with recent recommendations of the Los Angeles Tall Buildings Design Council (LATBDC) 1 and the Tall Buildings Initiative (TBI) of Pacific Earthquake Engineering Center (PEER)2, and (f) beating effects are observed particularly in elongated responses whereby elongated responses can contribute to low-cycle fatigue. Analyses of one tall building from Japan affected during the 11 March 2011 M9.0 Tohoku earthquake, and one in Los Angeles, California during the 17 January 1994 M6.7 Northridge earthquake are presented. A variety of methods including spectral analyses, system identification, and time-frequency functions are used to extract dynamic response characteristics (modal frequencies and damping), drift ratios, and effect of site conditions including basin effects. In general, data-driven analyses show that, the two tall buildings (as well as many others not reported herein) exhibit (a) lower damping than those used in current design process analyses (<3%) and (b) a beating effect and significant basin effect. These are significant: (1) Additional damping generating elements can be considered during design processes to decrease the prolonged and amplified responses. (2) Basin effects are not considered during design, it is important to at least consider looking into such effects as these can result in resonance and amplified responses as shown in recent studies.

Los Angeles, Osaka↗
USGS2014

Book review: Spatial capture-recapture

Understanding how animals use space is a vital aspect of conservation planning and wildlife management. Technological developments (e.g., increased computer power and desktop geographic information system [GIS] applications) are bringing the ability to analyze spatial data sets to the individual biologist. Therefore, it is not surprising that methodologies have been developed to incorporate space into capture-recapture models, which are some of the most fundamental models in the field of wildlife ecology. Spatial Capture-Recapture (hereafter SCR) is a timely and informative contribution that summarizes the history and motivation behind SCR models, in addition to providing details of the methodological framework that allows the reader to develop and customize SCR models to address their own ecological questions. Review info: Spatial Capture-Recapture. By J. Andrew Royle, Richard B. Chandler, Rahel Sollmann, and Beth Gardner, 2014. ISBN: 978-0124059399, 577 pp.

Journal of Wildlife Management↗
USGS2016

Spatially explicit modeling in ecology: A review

The use of spatially explicit models (SEMs) in ecology has grown enormously in the past two decades. One major advancement has been that fine-scale details of landscapes, and of spatially dependent biological processes, such as dispersal and invasion, can now be simulated with great precision, due to improvements in computer technology. Many areas of modeling have shifted toward a focus on capturing these fine-scale details, to improve mechanistic understanding of ecosystems. However, spatially implicit models (SIMs) have played a dominant role in ecology, and arguments have been made that SIMs, which account for the effects of space without specifying spatial positions, have an advantage of being simpler and more broadly applicable, perhaps contributing more to understanding. We address this debate by comparing SEMs and SIMs in examples from the past few decades of modeling research. We argue that, although SIMs have been the dominant approach in the incorporation of space in theoretical ecology, SEMs have unique advantages for addressing pragmatic questions concerning species populations or communities in specific places, because local conditions, such as spatial heterogeneities, organism behaviors, and other contingencies, produce dynamics and patterns that usually cannot be incorporated into simpler SIMs. SEMs are also able to describe mechanisms at the local scale that can create amplifying positive feedbacks at that scale, creating emergent patterns at larger scales, and therefore are important to basic ecological theory. We review the use of SEMs at the level of populations, interacting populations, food webs, and ecosystems and argue that SEMs are not only essential in pragmatic issues, but must play a role in the understanding of causal relationships on landscapes.

Ecosystems↗
USGS2019

The expectations and challenges of wildlife disease research in the era of genomics: Forecasting with a horizon scan-like exercise

The outbreak and transmission of disease-causing pathogens are contributing to the unprecedented rate of biodiversity decline. Recent advances in genomics have coalesced into powerful tools to monitor, detect, and reconstruct the role of pathogens impacting wildlife populations. Wildlife researchers are thus uniquely positioned to merge ecological and evolutionary studies with genomic technologies to exploit unprecedented ‘Big Data’ tools in disease research; however, many researchers lack the training and expertise required to use these computationally intensive methodologies. To address this disparity, the inaugural ‘Genomics of Disease in Wildlife’ workshop assembled early to mid-career professionals with expertise across scientific disciplines (e.g., genomics, wildlife biology, veterinary sciences, and conservation management) for training in the application of genomic tools to wildlife disease research. A horizon scanning-like exercise, an activity to identify forthcoming trends and challenges, performed by the workshop participants identified and discussed five themes considered to be the most pressing to the application of genomics in wildlife disease research: i) “Improving Communication”, ii) “Methodological and Analytical Advancements”, iii) “Translation into Practice”, iv) “Integrating Landscape Ecology and Genomics”, and v) “Emerging New Questions”. Wide-ranging solutions from the horizon scan were international in scope, itemized both deficiencies and strengths in wildlife genomic initiatives, promoted the use of genomic technologies to unite wildlife and human disease research, and advocated best practices for optimal use of genomic tools in wildlife disease projects. The results offer a glimpse of the potential revolution in human and wildlife disease research possible through multi-disciplinary collaborations at local, regional, and global scales.

Journal of Heredity↗
USGS2014

Groundwater discharge by evapotranspiration, Dixie Valley, west-central Nevada, March 2009-September 2011

With increasing population growth and land-use change, urban communities in the desert Southwest are progressively looking toward remote basins to supplement existing water supplies. Pending applications by Churchill County for groundwater appropriations from Dixie Valley, Nevada, a primarily undeveloped basin east of the Carson Desert, have prompted a reevaluation of the quantity of naturally discharging groundwater. The objective of this study was to develop a revised, independent estimate of groundwater discharge by evapotranspiration (ET g ) from Dixie Valley using a combination of eddy-covariance evapotranspiration (ET) measurements and multispectral satellite imagery. Mean annual ET g was estimated during water years 2010 and 2011 at four eddy-covariance sites. Two sites were in phreatophytic shrubland dominated by greasewood, and two sites were on a playa. Estimates of total ET and ET g were supported with vegetation cover mapping, soil physics considerations, water‑level measurements from wells, and isotopic water sourcing analyses to allow partitioning of ET g into evaporation and transpiration components. Site-based ET g estimates were scaled to the basin level by combining remotely sensed imagery with field reconnaissance. Enhanced vegetation index and brightness temperature data were compared with mapped vegetation cover to partition Dixie Valley into five discharging ET units and compute basin-scale ET g . Evapotranspiration units were defined within a delineated groundwater discharge area and were partitioned as (1) playa lake, (2) playa, (3) sparse shrubland, (4) moderate-to-dense shrubland, and (5) grassland. Groundwater ET is influenced primarily by phreatophytic vegetative cover, salinity of soil and groundwater within the playa, depth to groundwater, solar radiation, and air temperature. The annual groundwater contribution to site‑scale ET ranged from 24 to 61 percent of total ET at vegetated sites and 4 to 15 percent of total ET at playa sites. Mean annual ET g from vegetated sites ranged from 53 millimeters (mm) (0.17 foot [ft], 7.3 percent vegetative cover) to 225 mm (0.74 ft, 24.8 percent vegetative cover). Cumulative liquid‑water fluxes in the unsaturated zone indicate that ET g at vegetated sites was influenced primarily by plant transpiration. Binary mixing analyses of oxygen-18 isotopes in groundwater and shallow soil water indicate that plants predominantly use groundwater throughout the year. Groundwater fractions in greasewood stem water varied seasonally and ranged from 0.63 to 1.0. Mean annual playa ET g ranged from about 11 mm (0.04 ft) at the inner playa site (near-surface volumetric water content of 37–53 percent) to about 20 mm (0.07 ft) at the outer playa site located within 2 kilometers of the playa edge (near-surface volumetric water content of 25–38 percent), but playa ET g estimates were within the probable error (plus or minus [±] 20–23 mm; 0.06–0.08 ft). Varying playa ET g was influenced predominantly by salinity rather than depth to groundwater. Osmotic resistance and physical impediments to ET (such as surface salt crusts and salt precipitate in the soil pore space) increased with increasing salinity toward the playa center, whereas vapor pressure decreased. Mean annual basin-scale ET g totaled about 28 million cubic meters (Mm 3 ) (23,000 acre-feet [acre-ft]), and represents the sum of ET g from all ET units. Annual groundwater ET from vegetated areas totaled about 26 Mm 3 (21,000 acre-ft), and was dominated by the moderate-to-dense shrubland ET unit (54 percent), followed by sparse shrubland (37 percent) and grassland (9 percent) ET units. Senesced grasses observed in the northern most areas of the moderate-to-dense ET unit likely confounded the vegetation index and led to an overestimate of ET g for this ET unit. Therefore, mean annual ET g for moderate-to-dense shrubland presented here is likely an upper bound. Annual groundwater ET from the playa ET unit was 2.2 Mm 3 (1,800 acre-ft), whereas groundwater ET from the playa lake ET unit was 0–0.1 Mm 3 (0–100 acre-ft). Oxygen-18 and deuterium data indicate discharge from the playa center predominantly represents removal of local precipitation-derived recharge. The playa lake estimate, therefore, is considered an upper bound. Mean annual ET g estimates for Dixie Valley are assumed to represent the pre‑development, long-term ET g rates within the study area.

Nevada↗
USGS2015

Particle tracking for selected groundwater wells in the lower Yakima River Basin, Washington

The Yakima River Basin in south-central Washington has a long history of irrigated agriculture and a more recent history of large-scale livestock operations, both of which may contribute nutrients to the groundwater system. Nitrate concentrations in water samples from shallow groundwater wells in the lower Yakima River Basin exceeded the U.S. Environmental Protection Agency drinking-water standard, generating concerns that current applications of fertilizer and animal waste may be exceeding the rate at which plants can uptake nutrients, and thus contributing to groundwater contamination. The U.S. Geological Survey (USGS) recently completed a regional scale transient three-dimensional groundwater-flow model of the Yakima River Basin using MODFLOW-2000. The model was used with the USGS particle-tracking code MODPATH to generate advective flowpaths and associated travel times. Analyses used particle backtracking in time from September 2001 through 504 monthly stress periods to October 1959 or until pathlines terminated at a model boundary. The particle starting locations were assigned to 1,000 foot square computational model cells containing one or more of the 121 sampling locations with measured nitrate concentrations greater than the U.S. Environmental Protection Agency drinking-water standard for nitrate (10 milligrams per liter [mg/L]). Of the 2,403 particles, the simulated pathlines for 2,080 reached the water table within the 42-year simulation period, thus identifying the predicted recharge areas for those particles. The median horizontal straight-line distance was 13,194 feet between starting and ending locations for these particles and the median time-of-travel for particles that intersected the water table was 984 days. Well to water-table travel times for 75.4 percent of the particles were less than the average travel time of 3,749 days. Predicted recharge locations for all particles, including those that did not reach the water table in 42 years, were between 50 feet and 34 miles horizontal distance from their starting locations, with a median distance of less than 3 miles away. Generalized groundwater-flow directions in unconsolidated basin-fill deposits were towards the Yakima River, which acts as a local sink for shallow groundwater, and roughly parallel to topographic gradients. Particles backtracked from more shallow aquifer locations traveled shorter distances before reaching the water table than particles from deeper locations. Flowpaths for particles starting at wells completed in the basalt units underlying the basin-fill deposits sometimes were different than for wells with similar lateral locations but more shallow depths. In cases where backtracking particles reached geologic structures simulated as flow barriers, abrupt changes in direction in some particle pathlines suggest significant changes in simulated hydraulic gradients that may not accurately reflect actual conditions. Most groundwater wells sampled had associated zones of contribution within the Toppenish/Benton subbasin between the well and the nearest subbasin margin, but interpretation of these results for any specific well is likely to be complicated by the assumptions and simplifications inherent in the model construction process. Delineated zones of contribution for individual wells are sensitive to the depths assigned to the screened interval of the well, resulting in simulated areal extents of the zones of contribution to a discharging well that are elongated in the direction of groundwater flow.

Washington↗
USGS2013

Evapotranspiration from marsh and open-water sites at Upper Klamath Lake, Oregon, 2008--2010

Water allocation in the Upper Klamath Basin has become difficult in recent years due to the increase in occurrence of drought coupled with continued high water demand. Upper Klamath Lake is a central component of water distribution, supplying water downstream to the Klamath River, supplying water for irrigation diversions, and providing habitat for various species within the lake and surrounding wetlands. Evapotranspiration (ET) is a major component of the hydrologic budget of the lake and wetlands, and yet estimates of ET have been elusive—quantified only as part of a lumped term including other substantial water-budget components. To improve understanding of ET losses from the lake and wetlands, measurements of ET were made from May 2008 through September 2010. The eddy-covariance method was used to monitor ET at two wetland sites continuously during this study period and the Bowen-ratio energy-balance method was used to monitor open-water lake evaporation at two sites during the warmer months of the 3 study years. Vegetation at one wetland site (the bulrush site) consists of a virtual monoculture of hardstem bulrush (formerly Scirpus acutus, now Schoenoplectus acutus), and at the other site (the mixed site) consists of a mix of about 70 percent bulrush, 15 percent cattail (Typha latifolia), and 15 percent wocus (Nuphar polysepalum). Measured ET at these two sites was very similar (means were ±2.5 percent) and mean wetland ET is computed as a 70 to 30 percent weighted average of the bulrush and mixed sites, respectively, based on community-type distribution estimated from satellite imagery. Biweekly means of wetland ET typically vary from maximum values of around 6 to 7 millimeters per day during midsummer, to minimum values of less than 1 mm/d during midwinter. This strong annual signal primarily reflects life-cycle changes in the wetland vegetation, and the annual variation of radiative input to the surface and resulting temperature. The perennial vegetation begins each growing season submerged, emerges from the dead litter mat around late May or early June, reaches a maximum height of about 2.2 meters (m) during summer, senesces in October, and subsequently lodges over, contributing to the dead litter mat from previous years. Hydroperiods last about 5 to 6 months, typically beginning in January or February and ending in July or August, and have a minor influence on the annual ET cycle. These hydroperiods result from lake levels that typically vary about 1.3 m, from around 0.6 to 0.9 m above the wetland surface, to around 0.4 to 0.7 m below the wetland surface. An estimate of 3-year annual wetland ET, made by substituting early- and late-season data measured during 2009 for the missing periods in early 2008 and late 2010, is 0.938 meter per year (m/yr). Daily values of alfalfa-based reference ET (ET r ) were retrieved from the Bureau of Reclamation AgriMet Web site (http://www.usbr.gov/pn/agrimet/index.html) and are aggregated into biweekly, annual, and 3-year values (for consistency, the 3-year values are also computed using substitute data from 2009 for early 2008 and late 2010). These ET r values are computed from weather data measured at the nearby Agency Lake weather station (AGKO), and are based on the assumption that the alfalfa crop is green and vigorous year-round. The 3-year value of ET r is 1.145 m/yr, about 22 percent greater than wetland ET. A comparison of 2008–2010 alfalfa and pasture growing season actual ET with wetland ET is made using data from the more distant Klamath Falls AgriMet weather station (KFLO) because actual alfalfa and pasture ET are not computed for the AGKO site. During the 190-day average alfalfa growing season, wetland ET (0.779 m) is about 7 percent less than alfalfa ET (0.838 m). During the 195-day average pasture growing season, wetland ET (0.789 m) is about 18 percent greater than pasture ET (0.671 m). Assuming alfalfa and pasture ET are equal to wetland ET during the non-growing season, annual estimates become 0.997 m, 0.938 m, and 0.820 m from alfalfa, wetland, and pasture, respectively. Wetland crop coefficients (K c =ET/ET r ) are computed at daily, biweekly, and annual time steps. Approximate formulas are given to estimate daily values of growing season Kc, thereby allowing computation of daily growing season ET using ET r from the AGKO weather station. Biweekly values of growing season Kc are computed from ensemble average values of ET and ET r during the 3 study period growing seasons, and a single, mean Kc is computed for the non-growing season. Together, these provide relatively accurate estimates of biweekly ET during the study (RMSE=0.396 and 0.347 mm/d, r2 = 62 and 0.971 at the bulrush and mixed sites, respectively). A fourth-order polynomial fit of the biweekly growing season values to day of year provides a more automated form of ET computation. Measured ET at the bulrush wetland site during the current study compares very closely with growing-season ET estimated during a study in 1997 at nearly the same location. During the earlier study, ET was measured four times, using eddy covariance for 1- to 2-day periods, and was estimated between measurement periods using a Penman-Monteith model, calibrated to the measurements. Differences between time series of ET from the two studies are similar to interannual differences within the current study. Compared to the 1997 study, the current study measured larger ET rates in early summer and smaller rates in late summer, resulting in very similar growing-season totals. A study conducted in 2000 estimated ET from nearby fallowed cropland, using the Bowen-ratio energy balance method supplemented with Priestley-Taylor and crop-coefficient ET modeling. Seasonal timing of ET from three different crop types varied considerably, but growing-season totals were remarkably similar, at 0.435 ± 0.009 m. Wetland ET measured during the current study, evaluated over the same growing season was 0.718 m, or about 65 percent greater than the fallowed cropland ET. Open-water evaporation from Upper Klamath Lake was measured at two locations during the warmer months of 2008–2010 using the Bowen-ratio energy balance method. Measured rates were in general agreement with those measured in 2003 using the same method. Open-water evaporation and wetland ET were nearly equal during late June through early August, when wetland vegetation was green and abundant. As expected, open-water evaporation consistently exceeded wetland ET during late summer, as wetland ET responded to vegetation senescence while open water evaporation responded to extra available energy in the form of heat previously stored in the lake. Overall, open-water evaporation was 20 percent greater than wetland ET during the same period.

Oregon↗
USGS2010

Patterns of ancestry and genetic diversity in reintroduced populations of the slimy sculpin: Implications for conservation

Reintroductions are a common approach for preserving intraspecific biodiversity in fragmented landscapes. However, they may exacerbate the reduction in genetic diversity initially caused by population fragmentation because the effective population size of reintroduced populations is often smaller and reintroduced populations also tend to be more geographically isolated than native populations. Mixing genetically divergent sources for reintroduction purposes is a practice intended to increase genetic diversity. We documented the outcome of reintroductions from three mixed sources on the ancestral composition and genetic variation of a North American fish, the slimy sculpin (Cottus cognatus). We used microsatellite markers to evaluate allelic richness and heterozygosity in the reintroduced populations relative to computer simulated expectations. Sculpins in reintroduced populations exhibited higher levels of heterozygosity and allelic richness than any single source, but only slightly higher than the single most genetically diverse source population. Simulations intended to mimic an ideal scenario for maximizing genetic variation in the reintroduced populations also predicted increases, but they were only moderately greater than the most variable source population. We found that a single source contributed more than the other two sources at most reintroduction sites. We urge caution when choosing whether to mix source populations in reintroduction programs. Genetic characteristics of candidate source populations should be evaluated prior to reintroduction if feasible. When combined with knowledge of the degree of genetic distinction among sources, simulations may allow the genetic diversity benefits of mixing populations to be weighed against the risks of outbreeding depression in reintroduced and nearby populations. ?? 2010 US Government.

Conservation Genetics↗