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Results for “Canadian Journal Fisheries and Aquatic Sciences”

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At least 253 records · Page 14Linked to original sources
USGS2025

Native Yellowstone cutthroat trout Oncorhynchus virginalis bouvieri growth and survival in a headwater stream primarily driven by warming stream temperatures, with non-native brown trout Salmo trutta posing an additional threat to survival

Warming rivers and interactions with non-native species impact salmonid species globally. Understanding how hydroclimatic conditions synergistically and independently interact with non-native species is critical for effectively managing salmonids into the future. We used a 10-year mark–recapture dataset to assess how native Yellowstone cutthroat trout (YCT) Oncorhynchus virginalis bouvieri and non-native brown trout Salmo trutta growth rates and apparent survival were affected by hydroclimatic conditions and (for YCT) the presence of brown trout in a tributary. Growth (YCT) and survival (both species across size classes) were negatively related to warming stream temperatures. Brown trout growth was positively related to increasing daily streamflow variability (a proxy for streamflow), but this variable was not included in the top YCT growth model. Density-dependent effects appeared to be non-existent (growth) or weakly positive (survival). When sympatric with brown trout, YCT displayed worse survival than allopatric YCT across environmental conditions. Broadly, we found native and non-native trout respond to different hydroclimatic conditions that shift with changing climatic conditions, and brown trout represent an additional threat to YCT survival.

Montana↗
USGS2025

Reproductive contribution of lake sturgeon transferred upstream of dams on a Great Lakes tributary

Dam construction contributes to declines in the distribution and abundance of many fishes. Increasing connectivity through adult transfer can be demographically and genetically beneficial, but assessing the effects resulting from transfer can be difficult if resident fish exist upstream. Genotypes of adult and larval lake sturgeon ( Acipenser fulvescens ) were used to quantify contributions to larval recruitment from adults transferred upstream of dams on the Menominee River, USA. We evaluated whether transfer timing, sex, and adult size were associated with the odds of reproduction. Elevator transfer operations in Fall 2019, Fall 2020, and Spring 2021 resulted in 152 male and 81 female lake sturgeon transferred upstream. In 2020 and 2021, 580 and 518 larvae were genotyped. We found that 86% (201/233) of adults reproduced and 62.3% (684/1098) of offspring had transferred parents. In total, we estimated that 392 resident adults contributed to offspring production. Mixed matings accounted for 53% of offspring genotyped, increasing levels of offspring genetic diversity relative to offspring produced from resident-only matings. Transferring adults may be a viable restoration alternative for other iteroparous fish in river systems where connectivity to spawning areas has been impeded.

Michigan, Wisconsin↗
USGS2025

Using complementary biomarkers to unravel fish lifetime exposure to hypoxia and mercury

Aquatic ecosystems are losing oxygen due to climate change. This deoxygenation can favor microbial methylation of mercury (Hg). To understand the dynamics of Hg under increasing deoxygenation, we simultaneously quantified both Hg and hypoxia (< 2 mg O2/L) lifetime chronologies in fishes. We used a novel combination of chemical biomarkers in ear stones and eye lenses. We compared these markers in two species with different life histories, benthic Round Goby (Neogobius melanostomus) and semi-demersal Yellow Perch (Perca flavescens), from two connected ecosystems with different levels of hypoxia: the Central Basin of Lake Erie and the less hypoxic but more polluted Western Basin. Overall, Central Basin Round Goby were exposed to hypoxia throughout their lifetime and exhibited significantly elevated eye lens Hg concentrations ([Hg]) compared to their Western Basin counterparts. In contrast, the Central Basin Yellow Perch were exposed to hypoxia only at their juvenile stage. Central Basin Yellow Perch exhibited significantly lower eye lens [Hg] compared to their Western Basin counterparts. Patterns revealed by eye lens [Hg] were not detectable in muscle tissue [Hg]. Findings show that exposure to hypoxia can alter fish lifetime Hg accumulation patterns, with species-specific outcomes.

central and western basins of Lake Erie↗
USGS2025

Influence of local river hydraulics on Kootenai River white sturgeon (Acipenser transmontanus) habitat selection during four spawning years, 2017–2020

Understanding fine-scale habitat selection of endangered Kootenai River white sturgeon ( Acipenser transmontanus ) is an important component for monitoring and recovery efforts. Fine-scale habitat selection and quantifying temporal changes in suitable habitat contributes to the work of addressing recruitment failure within the Kootenai River population. Habitat suitability indices were developed using over 96 000 acoustic telemetry sturgeon detections and two-dimensional hydrodynamic model simulations near Bonners Ferry, Idaho, USA. The selected habitat was assessed to develop habitat suitability indices for sturgeon; females undergoing spawn migrations and non-spawners. The most frequented locations were 8–9 m deep and water velocities of 0.3–0.7 m·s −1 . These observations suggest sturgeon with different spawning capabilities selected similar habitat. Weighted usable area was calculated to understand temporal variability in habitat quality, which showed a positive relationship with increases in flow. Results help understand the habitat limiting factors in regulated hydrologic regimes; provide biologists insight for monitoring efforts in discrete habitat conditions; guidance for water managers and the regulation of upstream water resources; and guidance to restoration practitioners for in-stream structure designs.

Idaho↗
USGS2025

Mixed natal origins present management challenges for a non-native fish established throughout a modified river network

Expansion of non-native brown trout ( Salmo trutta ) in the Colorado River below Glen Canyon Dam motivated reevaluation of suppression strategies to minimize potential impacts to native fishes in the Grand Canyon, Arizona, USA. Brown trout are one of several non-native fish species of management concern in this river reach, and understanding their natal sources and movement patterns may assist managers in planning suppression strategies. We identified trace elements in brown trout otoliths, which, when coupled with location-specific water chemistry data, identified brown trout natal origins over 19 years. Strontium and manganese concentrations revealed distinct emigration patterns from natal tributary streams and the mainstem Colorado River over two periods. Adult brown trout collected from throughout our study area showed mixed tributary and mainstem natal origins, which persisted during suppression efforts in a known spawning tributary. Unexpectedly, we found evidence of brown trout reproduction in the Colorado River for at least a decade before documentation through field monitoring. Our findings may inform but complicate the development of management strategies for system-wide brown trout suppression.

Arizona↗
USGS2025

Estimating predation of adult sockeye salmon by American white pelicans in the Columbia River using a state-space Bayesian approach

Adult sockeye salmon ( Oncorhynchus nerka ) migrate past the largest breeding colony of American white pelicans ( Pelecanus erythrorhynchos) in the Columbia River, USA. To investigate the magnitude of pelican predation on sockeye salmon, a state-space Bayesian model was used to estimate spatially and temporally explicit predation and survival probabilities, and to estimate the total number of salmon consumed by pelicans each year. Results show that pelican predation was a substantial source of salmon mortality in some years, with median predation probabilities ranging annually from 0.015 to 0.084, resulting in an estimate of 1328 to 47 265 fish consumed annually from 2014 to 2023. While there was evidence that predation probabilities were associated with the number of sockeye salmon returning to the Columbia River annually, there was no evidence that fish length was associated with susceptibility to predation. Additional research aimed at investigating how other biotic and abiotic factors influence sockeye salmon susceptibility to pelican predation are needed to broaden our understanding of predator–prey interactions and to determine to what degree predation limits sockeye salmon survival prior to spawning.

Washington↗
USGS2025

Integrating acoustic telemetry research into management: successes and challenges in the Laurentian Great Lakes

In the Laurentian Great Lakes, the application of acoustic telemetry to track fish movements has evolved into an important part of multijurisdictional management. Nevertheless, barriers remain in translating telemetry research into management or conservation actions. Here, we synthesize acoustic telemetry literature within the Great Lakes basin to explore factors that have contributed to successes and failures of integrating research with the needs of decision-making processes. Collaboration between researchers and managers, facilitated by consistent opportunities for stakeholder engagement, stood out as one of the most effective means of integration. For example, 79% (95 of 127) of articles published (up to 2023) included co-authorship by both government and academic organizations. Case studies on lake sturgeon ( Acipenser fulvescens ), walleye ( Sander vitreus ), and sea lamprey ( Petromyzon marinus ) further highlight how telemetry has informed management through collaborative engagement among researchers, stakeholders, and managers, as well as ongoing challenges. By exploring facets of acoustic telemetry research and connections to conservation and fisheries concerns, we identify pathways to reduce knowledge–action gaps widely applicable within and outside of the Great Lakes.

Laurentian Great Lakes↗
USGS2025

Negative growth in body mass of trout and salmon in a small stream network

In species inhabiting stressful environments, some individuals experience negative growth in body mass during their lives, potentially influencing survival, reproduction, populations, and ecosystems. Using data from a long-term (1997–2015) study of brook trout ( Salvelinus fontinalis ), brown trout ( Salmo trutta ), and juvenile Atlantic salmon ( Salmo salar ) in Massachusetts, USA, we analyzed the frequency, causes, and consequences of seasonal mass loss. Negative growth occurred in 14.8% of observations (3573 instances), with the highest prevalence during summer (June–September). Species differed markedly: 42.5% of juvenile Atlantic salmon, 24.9% of brook trout, but only 7.7% of brown trout exhibited negative growth. The likelihood of mass loss increased with size, age, and low stream flows, particularly in summer. Brook trout in the small or isolated tributaries exhibited less summer mass loss than those in the larger streams. Other factors, including temperature and population density, had minimal or inconsistent effects. Individuals experiencing negative growth, especially brook trout in summer and autumn, were less likely to be re-encountered. As we observed no association of mass loss with movement, this suggests a potential survival cost of negative body mass growth.

Massachusetts↗
USGS2025

Combining acoustic telemetry and side-scan sonar to estimate abundance of endangered shortnose sturgeon in the Hudson River, New York

For endangered shortnose sturgeon (Acipenser brevirostrum), the ability to estimate and monitor population size is critical for tracking species’ recovery. Yet, contemporary abundance estimates have not been completed for many shortnose sturgeon populations, largely owing to the difficulty in using traditional abundance estimators for sturgeons. Here, we estimate the adult shortnose sturgeon population size of the Hudson River, NY by integrating data from two largely passive sampling methods – acoustic telemetry and side-scan sonar – into a Bayesian hierarchical model of abundance. We estimated the adult abundance to be 69,798 individuals (95% CI = 9,207-185,666), making the Hudson River the largest extant shortnose sturgeon population. Despite this, the population remains vulnerable to localized disturbances, as over 40% of the population congregated in a small overwintering habitat that coincides with an area of high anthropogenic activity. Accordingly, recurrent demographic surveys may be beneficial for gaining insight into the relative effects of anthropogenic and naturally stochastic processes shaping shortnose sturgeon demography. Our modeling framework provides a relatively low-cost alternative for future demographic monitoring of species of conservation concern.

New York↗
USGS2026

Decreased water transparency of nearshore Laurentian Great Lakes habitats is driven by increased dissolved organic carbon.

Little is understood of lake browning (due to increased dissolved organic carbon; DOC) in large lakes such as the Laurentian Great Lakes. Lake browning can alter whole lake ecosystems, including decreasing exposure to damaging ultraviolet radiation (UV-B) which is strongly and selectively attenuated by DOC more so than photosynthetically active radiation (PAR). We compared the changes in UV-B and PAR transparency to DOC data collected during the ice-free seasons from 62 nearshore sites in four of the five Great Lakes from 2002 to 2022 using linear mixed effects regression models based on backwards selected Bayesian information criteria. Regionally, DOC significantly increased from 2002 to 2022 by 0.5% per year on average. DOC strongly and inversely explained the variability of UV-B and PAR transparencies, as did seasons and offshore influence on these habitats. We provide regional evidence of lake browning within the nearshore habitats of the Great Lakes as a strong contrast to the well-documented increased offshore water transparency associated with the spread of invasive dreissenid mussels.

Great Lakes↗
USGS2025

Smallmouth bass (Micropterus dolomieu) and chain pickerel (Esox niger) identified as Atlantic salmon (Salmo salar) smolt predators in a reservoir system

Reservoir predation has been identified as a leading mortality source for smolts migrating through impounded river systems. We investigated smolt predation risk for an endangered Atlantic salmon ( Salmo salar ) population in the Weldon Dam reservoir in the Penobscot River, Maine, USA. In spring 2022, we characterized the fates of 390 tethered smolts. Smolts were exclusively predated by two predator species not native to the study area: chain pickerel ( Esox niger , n = 43) and smallmouth bass ( Micropterus dolomieu , n = 42). Using Cox-proportional hazard analysis, we estimated that 23% (95% CI = 15%–29%) of tethered smolts were expected to be predated within a one-hour deployment. Water temperature was the primary driver of predation risk as predation probability increased from 10% to 33% when temperature increased from 5 to 15 °C. Smolts also incurred above-average predation risk when they were within 40 m of shore. We demonstrate that non-native fish predation may drive patterns of high impoundment mortality and that risk is spatially and temporally heterogeneous within these systems. Collectively, this study offers direct evidence of species-specific predation on Atlantic salmon smolts and illuminates potential strategies to mitigate predation risk during reservoir migration.

Maine↗
USGS2025

Elevation mediates juvenile steelhead demographic response to stream temperature and flow

Climate change alters streams by modifying flow dynamics, temperature, and biotic communities, changing the habitat where stream dwelling fish have evolved. We used snorkel survey data spanning four decades to investigate how juvenile steelhead (anadromous Oncorhynchus mykiss ) counts and size structure were influenced by stream temperature and flow. Warmer temperatures were associated with lower abundance and larger fish at low elevations and with higher abundance and smaller fish at higher elevations. Low flows were related to increased abundance and smaller fish at low elevations but to decreased abundance at high elevations, suggesting that lower elevation streams, which tend to be larger, provided additional habitat during low flows. High flows were negatively related to abundance and positively related to average size, suggesting emigration of fish in younger age-classes. Overall, steelhead exhibited greater resilience to warm temperatures at high elevations and, conversely, greater resilience to low and high flows at lower elevations. Understanding how streamflow and temperature affect juvenile steelhead abundance and size structure provides insight into how climate change can affect juvenile steelhead production.

Idaho↗
USGS2025

Dispersal and survival of sea lamprey in Lake Erie and connected waterways

Invasive sea lamprey inhabiting the North American Laurentian Great Lakes are the target of the world’s longest running vertebrate invasive species control program. However, metapopulation dynamics comprising survival and dispersal during the sea lampreys’ lake-resident life stages are poorly understood. We applied acoustic telemetry and continuous-time multistate capture-recapture modeling to address this knowledge gap in Lake Erie. We acoustic-tagged sea lamprey (n = 619) and deployed acoustic receivers into all known connected waterways containing larval sea lamprey rearing habitat (n = 23), including the Detroit River (connecting Lake Erie to Lake Huron) and distributaries to Lake Ontario. Distribution of tagged sea lamprey to putative spawning waterways was shaped by heterogeneous stream attractiveness and distance-limited dispersal. Using parameter estimates from our capture-recapture model and simulation, we predicted survival and dispersal outcomes for a hypothetical sea lamprey population evenly distributed throughout Lake Erie at the beginning of January (34% pre-spawn mortality, 45% dispersal into Lake Erie tributaries, 19% dispersal into the Detroit River, and 2% dispersal into Lake Ontario). The methodology we applied may be widely useful for investigating dispersal and survival of aquatic organisms.

Lake Erie, Lake Ontario↗
USGS2026

Migration water temperature and heat stress assessments in western Alaska Chinook salmon overlapping the 2019 heatwave

Chinook salmon population declines span their geographic range with climate hypothesized as a major driver. Concerns of warming freshwater temperatures in their northern range gained urgency during 2019 when a heatwave coincided with premature mortality. This study examined heat stress during the 2019 heatwave compared to subsequent years and described water temperatures in western Alaska to understand the degree to which freshwater temperatures may be a stressor. Heat stress was prevalent among Chinook salmon captured in the 2019 heatwave (Kuskokwim tributaries: 90% in Kwethluk and 63% Takotna river), and variable in subsequent years (∼8% to 60% across Kuskokwim tributaries and Norton Sound rivers). A review of water temperature data indicated that potentially stressful temperatures (≥18 °C) were most common and prolonged in the Yukon River, moderately common and prolonged in the Kuskokwim River, and relatively rare in the Norton Sound region. Water temperatures in 2019 broke several records for overall maximum and frequency of temperatures ≥ 18 °C. Migration water temperatures and heat stress in northern Pacific salmon habitats vary more widely than previously recognized (up to 25 °C).

Alaska↗
USGS2026

Integrating mark-recapture, catch, and expert habitat assessments to quantify recent increases in humpback chub abundance over a 200 km long river segment of the Colorado River in western Grand Canyon

Humpback chub, Gila cypha, were historically distributed throughout large portions of the Colorado River basin and were federally listed in 1967. In the Grand Canyon segment of the Colorado River, located below Glen Canyon Dam, chub abundances continued to decline through the early 2000s. Recently, catch has increased substantially, especially in the western Grand Canyon. Here, we integrate mark-recapture and catch data of subadult and adult humpback chub, with expert assessments of habitat suitability and an underlying model of spatial autocorrelation, to estimate abundance in western Grand Canyon from 2010 to 2024, a time of rapid population increase and expansion. Our model suggests that adult abundance grew ∼160 fold during this 15-year period, with a median adult population abundance of 70 000 (40 000–200 000; 95% credible interval) in 2024. Our approach identifies years with high population growth and indicates that the spatial distribution has changed over time. We test the sensitivity of our results to movement into sampling reaches during sampling with baited hoop nets. Despite rapid population growth, the resilience of humpback chub in western Grand Canyon is unknown.

Arizona↗
USGS2026

Availability of dark daytime refuge may limit mysid abundance in the Laurentian Great Lakes

The zooplankton Mysis diluviana is a major component of the Laurentian Great Lakes food web and has recently declined in abundance in both lakes Michigan and Huron. Drivers of these declines are not well understood. Here, we explore the hypothesis that recent increases in water clarity have contributed to the decline of M. diluviana (mysids) by limiting the availability of daytime dark refuge from visual predators. Using Secchi depth data from 1996 to 2021, we estimate that dark refuge has decreased substantially in lakes Michigan and Huron where mysids have declined, but dark refuge has remained more stable in lakes Ontario and Superior where mysid populations did not decline. Results from a 2021 uncrewed surface vessel hydroacoustic survey and lake-wide, net-based sampling in lakes Michigan and Huron revealed significantly more mysids in areas with dark refuge, such as Lake Michigan’s northern basin. Conversely, Lake Huron contains sparse dark refuge consistent with low mysid densities in that lake. Higher water clarity leading to increased predation may be a primary driver of mysid declines in the Great Lakes.

Laurentian Great Lakes↗
USGS2026

Evaluating the effects of a multi-modal deterrent on upstream passage by invasive carp and native species

Invasive carp, including Silver Carp ( Hypophthalmichthys molitrix ) and Grass Carp ( Ctenopharyngodon idella ), are increasing their range within the Mississippi River Basin, threatening native fishes and ecosystem function. We conducted a 3-year field test of a multi-modal deterrent that uses sound, bubbles, and light to test its ability to impede upstream passage by invasive carp. The test was performed at a lock and dam on the Cumberland River, Kentucky, USA, using acoustic telemetry to track the movements of Silver Carp, Grass Carp, and several native fish species. When the deterrent was operating, the estimated probability of upstream lock passage was 53% lower (95% CI: 41%–63%) for Silver Carp but 74% higher (95% CI: 3%–190%) for Grass Carp compared to times when the deterrent was not operating. Paddlefish ( Polyodon spathula ) passage was reduced by 43% (95% CI: 71% reduction to 9% increase), although this was not statistically significant. We detected no significant effects on Freshwater Drum ( Aplodinotus grunniens ) or Smallmouth Buffalo ( Ictiobus bubalus ). However, sample sizes were small for these native species, limiting our ability to identify effects. Water temperature, tailwater elevation, and vessel lockages affected passage rates, although this varied among species.

Kentucky↗
USGS2026

Rearing method has limited effect on post-release movement of reintroduced age-0 Lake Sturgeon

Overfishing, habitat loss, and pollution caused the extirpation of Lake Sturgeon ( Acipenser fulvescens ) throughout much of the Great Lakes. A Lake Sturgeon reintroduction program using two rearing strategies began in 2018 in the Maumee River, a tributary of Lake Erie. We assessed the movement of streamside or traditionally reared age-0 Lake Sturgeon using acoustic telemetry to determine if rearing strategy affected river residency, movement, and the habitat area used. Tagged sturgeon generally left the Maumee River for Lake Erie on average 3–47 days after stocking and spent most of their time in the western basin of Lake Erie. The majority of sturgeon moved through nearshore areas along the south shore of Lake Erie. While we found no differences in post-stocking movements or habitat area used between the two rearing strategies, understanding how older life stages respond to rearing strategy is needed. Adding upstream stocking sites, using source water to raise eggs or larvae if excessive straying becomes evident, and increased acoustic receiver coverage are options to facilitate and evaluate successful recovery of Lake Sturgeon.

Ohio↗