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Plankton communities and summertime declines in algal abundance associated with low dissolved oxygen in the Tualatin River, Oregon

Phytoplankton populations in the Tualatin River in northwestern Oregon are an important component of the dissolved oxygen (DO) budget of the river and are critical for maintaining DO levels in summer. During the low-flow summer period, sufficient nutrients and a long residence time typically combine with ample sunshine and warm water to fuel blooms of cryptophyte algae, diatoms, green and blue-green algae in the low-gradient, slow-moving reservoir reach of the lower river. Algae in the Tualatin River generally drift with the water rather than attach to the river bottom as a result of moderate water depths, slightly elevated turbidity caused by suspended colloidal material, and dominance of silty substrates. Growth of algae occurs as if on a “conveyor belt” of streamflow, a dynamic system that is continually refreshed with inflowing water. Transit through the system can take as long as 2 weeks during the summer low-flow period. Photosynthetic production of DO during algal blooms is important in offsetting oxygen consumption at the sediment-water interface caused by the decomposition of organic matter from primarily terrestrial sources, and the absence of photosynthesis can lead to low DO concentrations that can harm aquatic life. The periods with the lowest DO concentrations in recent years (since 2003) typically occur in August following a decline in algal abundance and activity, when DO concentrations often decrease to less than State standards for extended periods (nearly 80 days). Since 2003, algal populations have tended to be smaller and algal blooms have terminated earlier compared to conditions in the 1990s, leading to more frequent declines in DO to levels that do not meet State standards. This study was developed to document the current abundance and species composition of phytoplankton in the Tualatin River, identify the possible causes of the general decline in algae, and evaluate hypotheses to explain why algal blooms diminish in midsummer. Plankton and water-quality sample data from 2006 to 2008 were combined with parts of a larger discrete-sample and continuous water-quality monitoring dataset and examined to identify patterns in water-quality and algal conditions since 1991, with a particular emphasis on 2003–08. Longitudinal plankton surveys were conducted in 2006–08 at six sites between river miles (RM) 24.5 and 3.4 at 2- to 3-week intervals, or 5–6 per season, and in-situ bioassay experiments were conducted in 2008 to examine the potential effects of wastewater treatment facility (WWTF) effluent and phosphorus additions on phytoplankton biomass and algal photosynthesis. Phytoplankton and zooplankton community composition, streamflow, and water-quality data were analyzed using multivariate statistical techniques to gain insights into plankton dynamics to determine what factors might be most tied to the abundance and characteristics of the phytoplankton assemblages, and identify possible causes of their declines. The connection between low-DO events and algal declines was clearly evident, as bloom crashes were nearly always followed by periods of low DO. Algal blooms occurred each year during 2006–08, producing maximum chlorophyll-a (Chl-a) values in June or July generally in the range of 50–80 micrograms per liter (µg/L). Bloom crashes and absence of sufficient algal photosynthesis in mid- to late-summer contributed to minimum DO concentrations that were less than the State standard of 6.5 milligrams per liter (mg/L) based on the 30-day mean daily concentration, for 62–74 days each year. At times, the absolute minimum State standard (4 mg/L DO) also was not met. To learn more about why low-DO events occurred, specific algal declines during 2003–08 were scrutinized to determine their likely causal factors. From this information, a series of hypotheses were formulated and evaluated in terms of their ability to explain recent declines in algal populations in the river in late summer. Meteorological, streamflow, turbidity, water temperature, and conductance conditions in the Tualatin River during the 2006–08 summer seasons were not atypical. Natural flow comprised the majority (70–80 percent) of flow each year during spring, but then reduced to 38–40 percent during midsummer when WWTF effluent—which contributed as much as 36 percent—and flow augmentation releases comprised a greater fraction of the flow. Summer 2008 was unusual, however, in the prolonged influence from the Wapato Lake agricultural area near Gaston in the upper part of the basin. The previous winter flooding and levee breach at Wapato Lake caused a much greater area of inundation. As a result, drainage from this area continued into July, much later than normal. A subsequent algal bloom in Wapato Lake then seeded the upper Tualatin River, and this drainage had a profound effect on the downstream plankton community. A large blue-green algae bloom developed—the largest in recent memory—prompting a public health advisory for recreational contact for about two weeks. Algal growths and surface blooms are a common feature of the Tualatin River. Most of the dominant algae have growth forms and morphologies that are well suited for planktonic life, employing spines and gas vacuoles to resist settling, forming colonies, and producing mucilage (or toxins) to resist zooplankton grazing. In 2006–08, 143 algal taxa were identified in 117 main-stem samples; diatoms and green algae were more diverse than blue-green, golden, and cryptophyte algae, although these later groups sometimes dominated the overall volumetric abundance (biovolume). The most frequently occurring taxa, occurring in 97–99 percent of samples, were flagellated cryptophytes Cryptomonas erosa and Rhodomonas minuta. Other important algal taxa included centric diatoms Stephanodiscus, Cyclotella, and Melosira species and colonial green algae Scenedesmus and Actinastrum. These taxa comprised the majority of the algal biovolume during much of the growing season. A general seasonal trend in the phytoplankton assemblages was observed, with dominance by filamentous centric diatoms Stephanodiscus and Melosira in spring and early summer, and flagellated cryptophytes and green algae, particularly Chlamydomonas sp., in late-summer; or, in 2008, dominance by blue-green algae Anabaena flos-aquae and Aphanizomenon flos-aquae during the Wapato Lake bloom event. There were 99 zooplankton taxa identified from the Tualatin River in 2006–08, composed primarily of cladocerans, copepods, and rotifers. A seasonal increase in zooplankton abundance was observed in early summer just as or shortly after the phytoplankton population began to increase, with populations growing to 15,000−120,000 organisms per cubic meter in the lower river. Zooplankton abundance showed a predictable and distinct longitudinal downstream increase, particularly downstream of Highway 99W (RM 11.6). Although grazing rates were not measured, the data suggest that, at times, zooplankton grazing may affect algal abundance and species composition in the Tualatin River, with diatoms becoming relatively less abundant and flagellated cryptophytes and green algae relatively more abundant during periods when zooplankton densities were highest. Multivariate statistical analyses identified soluble reactive phosphorus (SRP), natural flow, flow augmentation, and WWTF effluent as important factors influencing Tualatin River phytoplankton populations, with zooplankton density (particularly rotifers and copepods), specific conductance, chloride, and water temperature also having an important influence. Although SRP was highly correlated with the plankton communities, that correlation was likely the result of high or low algal activity (uptake) as SRP concentrations were often reduced to low levels during blooms. While previous studies have already established that phosphorus, among other factors such as flow, places a theoretical cap on the size of the phytoplankton population in the river, sometimes algal declines occur when SRP concentrations are apparently sufficient. To identify alternative causal factors, additional analyses were performed without SRP to focus on other water-quality parameters, zooplankton density, and flow factors. Considering data for all 3 years and including just those samples from the lower Tualatin River not affected by the 2008 Wapato Lake drainage event, three factors (percentage of reservoir flow augmentation, total natural flow, and rotifer density) best explained variations in the phytoplankton assemblages. Analyses focusing on the possible causes of algal declines included the above multivariate analyses, scrutiny of 10 specific instances of declines in algal populations during 2003–08 including several bloom–crash sequences, and analyses of historic routine watershed monitoring data from Clean Water Services. Six factors were hypothesized to be important in causing bloom crashes or impeding blooms from rebounding in August: (1) light limitation from cloudy weather, (2) a reduction in the plankton inocula or “seed” entering the lower river from upstream sources, (3) increased summer streamflows, (4) changes in the dominant sources of flow as the percentage of flow augmentation and WWTF discharges have increased, (5) zooplankton grazing, and (6) low concentrations of bioavailable phosphorus (<0.015 milligram per liter). All of these hypotheses are supported in some fashion by the available data and statistical analyses. Zooplankton grazing, short-term declines in photosynthesis from cloudy weather, total flow as it affects residence time, and the dominant source of flow are primary factors responsible for the low-DO events caused by declines in algae in the lower Tualatin River during late summer. Cloudy weather and increased turbidity are known to inhibit algal growth in the Tualatin River, and slight increases in turbidity in recent years may be a problem. Upstream sources of algae are critical in determining the characteristics and size of downstream populations, as illustrated by the Wapato Lake bloom in 2008, but more data are needed from upstream to fully define the importance of this connection. The sources of flow, through their differential contribution of plankton inocula (quality and amount), were, at times, important factors affecting phytoplankton populations. While SRP concentrations were often most highly correlated with phytoplankton species community, the bioavailability of phosphorus is still somewhat unknown and there are several sources to consider. Preliminary bioassay tests suggested that while treated wastewater effluent may stimulate algae at 30 percent concentrations, negative effects (or decreased stimulation) on Chl-a and DO production may occur at concentrations of 50 percent. Targeted data collection and future research will be needed to further understand the importance of these factors on Tualatin River phytoplankton. While the data and analysis completed for this report provide insights into future research and monitoring that would be useful to continue, additional monitoring of turbidity, Chl-a, and plankton abundance and species composition in the upper part of the basin would enhance our understanding of plankton dynamics and factors affecting phytoplankton abundance in the lower river. Assessment of the key upstream sources of algal inocula via surveys of the major flow sources as well as tributaries and wetlands would provide useful information for the management of river water quality. Other studies that could prove useful for developing management strategies include targeted experiments to evaluate the bioavailability of phosphorus from a variety of sources. New research on phytoplankton–zooplankton interactions, and studies of planktivorous fish, might also provide insight about food web dynamics and potential “top-down” effects of fish predation on the plankton communities. In addition, further development of neural-network or other water-quality models would help to evaluate management strategies and provide forecasts of water-quality conditions. Finally, periodic future reassessments of the available data with the multivariate statistical tools used in this study would be helpful to assess whether and how plankton communities are changing, and to continue to shed light on the importance of factors shaping the plankton. Although certain types and sizes of algal blooms are undesirable, minimum phytoplankton populations are an important part of aquatic food webs and are needed to maintain healthy levels of DO in the river. By understanding the sources, characteristics, causal factors, and responses of the plankton communities, management strategies can be developed to improve DO conditions in the lower Tualatin River during the important summer low-flow period.

Oregon

Real-time piscicide tracking using Rhodamine WT dye for support of application, transport, and deactivation strategies in riverine environments

Piscicide applications in riverine environments are complicated by the advection and dispersion of the piscicide by the flowing water. Proper deactivation of the fish toxin is required outside of the treatment reach to ensure that there is minimal collateral damage to fisheries downstream or in connecting and adjacent water bodies. In urban settings and highly managed waterways, further complications arise from the influence of industrial intakes and outfalls, stormwater outfalls, lock and dam operations, and general unsteady flow conditions. These complications affect the local hydrodynamics and ultimately the transport and fate of the piscicide. This report presents two techniques using Rhodamine WT dye for real-time tracking of a piscicide plume—or any passive contaminant—in rivers and waterways in natural and urban settings. Passive contaminants are those that are present in such low concentration that there is no effect (such as buoyancy) on the fluid dynamics of the receiving water body. These methods, when combined with data logging and archiving, allow for visualization and documentation of the application and deactivation process. Real-time tracking and documentation of rotenone applications in rivers and urban waterways was accomplished by encasing the rotenone plume in a plume of Rhodamine WT dye and using vessel-mounted submersible fluorometers together with acoustic Doppler current profilers (ADCP) and global positioning system (GPS) receivers to track the dye and map the water currents responsible for advection and dispersion. In this study, two methods were used to track rotenone plumes: (1) simultaneous injection of dye with rotenone and (2) delineation of the upstream and downstream boundaries of the treatment zone with dye. All data were logged and displayed on a shipboard laptop computer, so that survey personnel provided real-time feedback about the extent of the rotenone plume to rotenone application and deactivation personnel. Further, these strategies facilitate adjustment of rotenone application and deactivation strategies in real time if necessary based on the observed advection and dispersion of the rotenone plume. Two large-scale and complex applications of rotenone in the Chicago Area Waterway System (CAWS) in 2009 and 2010 to combat invasive Asian carp are documented in this report. The application in Chicago Sanitary and Ship Canal (CSSC) in December 2009 involved more than 1,800 gallons of rotenone injected at multiple stations through a 6.2-mile reach of the canal near Lockport, Illinois. The rotenone plume was encased in Rhodamine WT dye so that two survey boats provided real-time feedback to shore personnel regarding the plume extent as it advected downstream. Real-time tracking of the rotenone was essential in this large-scale application because of the multistage injection strategy and the numerous deactivation points required to minimize collateral damage to fisheries in surrounding and receiving water bodies. All timing of application and deactivation operations relied on dye tracking. A second application of rotenone in May 2010 to the Little Calumet River near O’Brien Lock and Dam (Illinois) provided another opportunity for dye-tracking support operations; however, application and deactivation strategies were designed considering zero-flow conditions within the reach of interest. Therefore, dye was injected at the upstream and downstream boundaries of the rotenone application reach and was used to track movement of water in and out of a treatment reach, allowing proper deactivation to occur and avoiding unnecessary damage to fisheries downstream. The data collected during the real-time tracking operations for both applications allowed full documentation of the rotenone treatment for archival purposes and provided information for future applications. The methods presented in this report for real-time tracking and documentation of piscicide applications in riverine environments worked exceptionally well and allowed the multiagency Asian Carp Rapid Response Workgroup to carry out large-scale rotenone applications in urban waterways in an environmentally responsible manner with minimal collateral damage to fisheries outside the treatment reach. Traveltime information extracted from the boat-mounted and fixed-position fluorometers agrees well with empirical predictions from a preliminary dye study (mock rotenone injection) on this system completed in November 2009 on the CSSC and with previously published methods for estimating traveltimes of the peak, leading edge, and trailing edge of the plume. Although the rotenone application strategy called for zero-flow conditions on the Little Calumet River in 2010, downstream advection of treated water did occur, and dye tracing combined with velocity mapping allowed this advection to be documented and exposed the unique hydrodynamics and mixing within this reach. The large volumes of data collected during the operations allow documentation and visualization of the rotenone applications, thus providing feedback to planners and archival of the treatments for future reference. The methods developed in this report are directly transferrable to piscicide applications in water bodies in other locations, including rivers, ponds, or lakes, and can be used for real-time tracking of any passive contaminant that may enter a water body.

Illinois

Upstream factors affecting Tualatin River algae—Tracking the 2008 Anabaena algae bloom to Wapato Lake, Oregon

Significant Findings A large bloom that included floating mats of the blue-green algae Anabaena flos-aquae occurred in the lower 20 miles of the Tualatin River in northwestern Oregon between July 7 and July 17, 2008. The floating bloom was deemed a hazard to recreational users of the river due to the potential production of algal toxins (anatoxin- a and microcystin), and a public health advisory was posted for the lower 10.8 miles of the river by the Oregon Department of Human Services for July 12&ndash;25, 2008. The bloom caused nuisance taste and odor issues and required modified drinking-water treatment techniques where water was withdrawn for municipal uses in the upper reaches of the Tualatin River, some 46 miles upstream of the worst algae problems. Using water sample data from Clean Water Services and the Joint Water Commission, and continuous and discrete monitoring data from the U.S. Geological Survey, the source of the anomalous water-quality conditions and the likely source of the Anabaena bloom was traced upstream to discharges from the Wapato Lake agricultural area near Gaston, Oregon, in the upper part of the watershed near river mile 60. The Wapato Lake algae bloom occurred as standing water remained on the lakebed far longer than normal&mdash;into early summer. A failure of the levee on the edge of Wapato Lake in December 2007 caused by heavy rainfall and high water in the canal outside the levee inundated the lakebed to a depth of 7&ndash;9 feet, storing thousands of acre-feet more water than its normal winter volume. The water could not be pumped out until the levee was repaired or river levels receded, thus delaying drainage of the lake until summer and facilitating the bloom. In normal summers, the lower Tualatin River grows a moderate crop of algae that responds strongly to streamflow (residence time), light available for photosynthesis, and phosphorus concentrations. In 2008, however, inoculation of the river with phytoplankton and zooplankton discharged from Wapato Lake some 30 miles upstream of the lower, pooled reach of the river demonstrated the importance of upstream factors on plankton communities and water-quality conditions in the Tualatin River. The Wapato Lake algae bloom of July 2008 provided useful information and lessons for agencies managing public health, wetlands, agricultural activities, and water quality in the Tualatin River basin and similar river basins elsewhere. The results and insights derived from this study can be used to enhance future monitoring and data collection strategies designed to improve water quality and plankton models and better predict dissolved-oxygen concentrations in the lower Tualatin River.

Oregon

Updates to the Madison Lake (Minnesota) CE–QUAL–W2 water-quality model for assessing algal community dynamics

A previously developed CE–QUAL–W2 model for Madison Lake, Minnesota, simulated the algal community dynamics, water quality, and fish habitat suitability of Madison Lake under recent (2014) meteorological conditions. Additionally, this previously developed model simulated the complex interplay between external nutrient loading, internal nutrient loading from sediment release of phosphorus, and the organic matter decomposition of the algal biomass. However, the partitioning of Cyanophyta within the modeling framework was simplified to one group and did not account for how different Cyanophyta populations are affected by light conditions, use of nitrogen, temperature growth ranges, and differences in settling rates. Properly capturing Cyanophyta dynamics is important given the potential risks posed by potential large algal blooms. For example, when Cyanophyta form large blooms, recreational activities can become restricted in certain areas because of thick algal scums or algal mats, in addition to the possible production of a class of toxins, known as cyanotoxins, capable of threatening human health, domestic animals, and wildlife. Therefore, we updated the model to partition the Cyanophyta into a group that fixed nitrogen and a second, more buoyant Cyanophyta group that did not independently fix nitrogen. The U.S. Geological Survey, in cooperation with the St. Croix Watershed Research Station (Science Museum of Minnesota) with support from the Environmental and Natural Resources Trust Fund of Minnesota (Legislative-Citizen Commission on Minnesota Resources), updated the Madison Lake CE–QUAL–W2 model to address the shortcomings of simulating Cyanophyta in the previously developed model and better characterize Cyanophyta into two groups. In addition to updating the Cyanophyta group differentiation, the part of the model that handles the simulation of algal community dynamics was updated while preserving model predictive capabilities for nutrients, water temperature, and dissolved oxygen. The calibration and validation of the model was done under recent meteorological conditions with large and persistent Cyanophyta blooms (2014 and 2016). Overall, the model simulations predicted the persistently large total phosphorus concentrations in the hypolimnion of Madison Lake and key differences in nutrient concentrations between 2014 and 2016. The Cyanophyta bloom persistence throughout the summer was also simulated by the model in 2014 and 2016, a critical goal of the model update. Finally, monthly total phosphorus budgets were calculated for the updated Madison Lake model for 2014 and 2016.

Minnesota

Investigation of potential factors controlling benthic algae in the upper White River Basin, Colorado, 2018–21

Nuisance levels of benthic filamentous green algae are becoming increasingly common in surface waters of Colorado and the western United States. In 2018 the U.S. Geological Survey began a study in cooperation with the White River and Douglas Creek Conservation Districts, Colorado River Basin Salinity Control Forum, and the Colorado River Water Conservation District to collect and analyze physical, chemical, and biological information for the upper White River Basin in Colorado and investigate causes of benthic algal blooms in the basin. This report (1) presents site-specific data including water temperature, riparian canopy cover, streambed particle size, and algal biomass and community composition; (2) describes the potential for streambed movement during spring runoff using physical channel characteristics and peak streamflow velocities; and (3) explains the results of a linear mixed-effects model used to test hypotheses about the influence of physical and chemical factors in explaining the occurrence of algal blooms across the basin. Benthic algal biomass ranged from 0.7 to 309 milligrams per square meter during the summer (July–August) from 2018 through 2021 and exceeded the Colorado Department of Public Health and Environment criteria of 150 milligrams per square meter on four occasions, in 2018. Four genera of filamentous green algae were identified in the upper White River Basin, including Cladophora , Stigeoclonium , Ulothrix , and Spirogyra . Many genera of cyanobacteria were present, including some capable of producing toxins and taste and odor compounds. The nuisance diatom Didymosphenia geminata , commonly referred to as didymo, was found at two sites on the South Fork White River and along the main stem White River. Hypotheses pertaining to the influence of measured variables on algal biomass were tested with a linear mixed-effects model. Median rock size and mean August water temperature had significant positive effects, meaning that greater bed stability and higher mean August water temperatures result in greater algal biomass. Total nitrogen to total phosphorus ratios had a significant negative effect on algal biomass, meaning that more nitrogen-limiting conditions, or greater phosphorus availability, corresponded to greater algal biomass. Streamflow and water temperature data at White River above Coal Creek near Meeker, Colo., were used to assess possible causes of bloom conditions across years, including when algal blooms were first studied in the basin during 2016 and 2017. Early or low-magnitude peak streamflow conditions were not prerequisites for algal bloom occurrence. Conversely, relatively large, late, and long-lasting peak streamflows, such as those measured in 2019, may limit algal blooms during the same year and into subsequent years, as evidenced by extremely low algal biomass in 2019 and 2020. The broad spatial extent of bloom conditions indicates that the factors contributing to the occurrence of algal blooms are likely basinwide. Findings from this multiyear study indicate that the effects caused by larger peak streamflow, including movement of the streambed, may be the dominant control on the occurrence of an algal bloom. The findings also indicate that in the absence of disturbance other resources, including substrate size, water temperature, and nutrient availability, moderate algal biomass.

Colorado

Isolation and identification of microcystin-degrading bacteria in Lake Erie source waters and drinking-water plant sand filters

The increasing prevalence of cyanobacterial harmful algal blooms and the toxins they produce is a global water-quality issue. In the Western Basin of Lake Erie, high microcystin concentrations have led to water-quality advisories, process adjustments for treating drinking water, and increased water-quality monitoring. Biodegradation is an environmentally friendly and cost-effective way to reduce concentrations of microcystins in drinking water; however, few studies have been done to determine biodegradation potential of bacteria indigenous to the Lake Erie watershed. As part of a cooperative program between the U.S. Geological Survey and the U.S. Environmental Protection Agency, this study aimed to identify naturally occurring microcystin-degrading bacteria in source waters and in the sand filters of drinking-water treatment plants in the Western Basin of Lake Erie. Biodegradation of microcystin-LR was found to occur in microcosms developed with three different Lake Erie-area sources—Lake Erie water, water from storage reservoirs supplied by inland streams, and water or solid medium from sand/anthracite filters at drinking-water plants. In microplates with microcystin-LR as the sole carbon source, 10 isolates exhibited cellular respiration and were, therefore, identified as promising microcystin biodegraders; 4 of those isolates subsequently were found to have potential to form biofilms. The 10 promising isolates along with 14 additional isolates from the microcosms were identified by 16S ribosomal RNA sequencing: 15 isolates were γ-proteobacteria, 6 isolates were β-proteobacteria, 1 isolate was an α-proteobacterium, 1 isolate was a flavobacterium in the phylum Bacteroidetes , and 1 isolate was in the phylum Actinobacteria . Isolates were screened for possession of the mlrA gene (found to encode for the protein responsible for cleaving the cyclic structure of microcystin), and results indicate that, for Lake Erie source waters and elsewhere, more work would be required to identify microcystin-biodegradation pathways and products and to confirm biodegradation rates in pure culture isolates.

Lake Erie

Spatiotemporal variability of algal biomass and nitrate in Owasco and Seneca Lakes in the Finger Lakes Region, New York, in 2019

Cyanobacterial harmful algal blooms (CyanoHABs) have become increasingly common, threatening the security of water resources globally. The U.S. Geological Survey conducted high-resolution nearshore mapping surveys using boat-mounted multiparameter sondes and nitrate sensors during the summer and fall of 2019 on Owasco Lake and Seneca Lake, two lakes with documented CyanoHABs in the Finger Lakes region of New York State. Discrete sensor measurements and water-quality samples were collected at fixed points along survey routes and continuous data were generated at open-water monitoring platforms. This investigation examined whether water-quality information from nearshore surveys was representative of open-water conditions and if nearshore surveys could be used to identify areas with localized nearshore CyanoHABs and potential sources of nutrients not captured by tributary sampling. In addition to comparisons across methods, nearshore concentrations of nitrate and chlorophyll were evaluated relative to tributary outlets, cyanobacterial abundance and biovolume at discrete locations, and the locations of near-surface CyanoHABs that were designated as “confirmed with high toxins” by the New York State Department of Environmental Conservation. Nitrate and chlorophyll concentrations were comparable across methods for each lake, although concentration ranges were typically higher for nearshore mapping datasets than for nearshore discrete datasets. Nearshore surveys indicated areas of nitrate enrichment that varied temporally in both lakes. Orthophosphate was not routinely detected. Across methods, median chlorophyll concentrations were higher for the summer survey than for the fall survey in Owasco Lake. Nearshore chlorophyll concentrations varied more temporally in Owasco Lake than in Seneca Lake. Phytoplankton and cyanobacterial abundance and biovolume were about five times higher in Owasco Lake than in Seneca Lake. Cyanobacteria dominated the phytoplankton community in most samples, and Microcystis comprised the bulk of the cyanobacterial biovolume. The most abundant potential cyanotoxin-producing (specifically microcystins) genera were Microcystis , Synechococcus , Aphanocapsa , and Pseudanabaena . The cyanobacterial community composition was comparable between open-water monitoring platforms and nearshore samples. Microcystins were detected in seven survey samples from Owasco Lake, in one survey sample from Seneca Lake, and in one sample each from the open-water monitoring platforms on Owasco and Seneca Lakes that were collected about 7 days before the fall surveys. Microcystin detections were not consistently associated with high cyanobacterial cell counts or cyanotoxin-producing genera. Results from nearshore surveys were comparable to open-water monitoring platforms and discrete nearshore observations in the absence of nearshore or open-water CyanoHABs in these systems during the study. Patterns of nearshore concentrations of nitrate and chlorophyll from nearshore surveys may aid in the identification of areas with localized nitrate loading and shifts in phytoplankton abundance and community composition.

New York

Evaluation of passive samplers for cyanotoxin detection by immunoassay and chromatographic-mass spectrometry

Harmful algal blooms, particularly cyanobacterial harmful algal blooms, threaten aquatic ecosystems, drinking water supplies, and recreational resources. In 2019, the U.S. Geological Survey, in collaboration with the New York State Department of Environmental Conservation, deployed solid phase adsorption toxin tracking (SPATT) samplers in Seneca Lake, Owasco Lake, and Skaneateles Lake to monitor the cyanotoxins microcystins, cylindrospermopsins, anatoxins, and saxitoxins. SPATT samplers can passively adsorb dissolved cyanotoxins over time, providing time-integrated data capable of detecting low concentrations of cyanotoxins that traditional discrete sampling may miss. SPATT samples were analyzed using enzyme-linked immunosorbent assay (ELISA), liquid chromatography with mass spectrometry (LC–MS), and with tandem mass spectrometry (LC–MS/MS). The effects of ELISA-required preservative on measurements by mass spectrometry methods were also evaluated. SPATT samplers consistently detected microcystins and anatoxins more frequently than concurrent discrete sampling. ELISA results often showed higher cyanotoxin concentrations than LC–MS/MS, likely due to interference from dissolved organic matter and the ability of ELISA to detect a broader range of congeners. The addition of preservative influenced results for some analytes, particularly microcystins, which showed higher concentrations in preserved samples. Limitations in ELISA methods for cylindrospermopsins and saxitoxins were identified, potentially related to cross-reactivity, low sensitivity, or other matrix interferences. This study demonstrates the utility of SPATT samplers in capturing cyanotoxin variability, especially in environments with low cyanotoxin levels or ephemeral blooms. Further research could help improve the reliability of ELISA and other analytical methods in freshwater ecosystems.

New York

Occurrence of cyanobacteria and associated cyanotoxins in the Raritan Basin Water Supply Complex, New Jersey, August 2020 to August 2021

Harmful algal blooms, particularly cyanobacteria harmful algal blooms (cyanoHABs), have emerged as a substantial global concern because of their detrimental effects on water quality and aquatic ecosystem health. CyanoHABs can produce cyanotoxins, which pose serious health risks to humans and wildlife, such as liver failure and respiratory distress. This is particularly concerning for water bodies that serve as drinking-water sources. Recent trends indicate an increase in the frequency and intensity of cyanoHABs globally. This study focuses on the Raritan Basin Water Supply Complex in New Jersey, where extensive monitoring was conducted from August 2020 to August 2021 to assess the presence of cyanobacteria and associated cyanotoxins. The research utilized a combination of discrete water-quality sampling, continuous monitoring, and solid phase adsorption toxin tracking (SPATT) to capture the dynamics of cyanotoxin occurrence and potential transport. Findings revealed a widespread presence of cyanobacteria and potential for cyanotoxin production, although actual cyanotoxin concentrations remained below drinking water and recreational thresholds. The study, conducted by the U.S. Geological Survey (USGS) in collaboration with the New Jersey Water Supply Authority (NJWSA) and the New Jersey Department of Environmental Protection (NJDEP), highlighted the limitations of traditional sampling methods and emphasized that continuous monitoring can support better understanding of how cyanoHAB conditions change over time and in different places. Genetic testing included quantitative polymerase chain reaction (qPCR) analyses, which demonstrated higher sensitivity, or increased findings of cyanobacteria compared to microscopy, indicating the potential for use in early warning systems. This research underscores that integrating various detection methods and hydrological data can enhance understanding of cyanotoxin dynamics in river systems.

New Jersey

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods

[Disease/condition] case definition [template] for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition template can be used for any disease/pathogen for any species. An editable version of this template is available for download at https://doi.org/10.3133/tm19A1 .

Techniques and Methods

West Nile virus (avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to West Nile virus and applies to all avian species.

Techniques and Methods

Avian botulism case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to avian botulism and applies to all avian species.

Techniques and Methods

Ophidiomycosis (snake fungal disease) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to Ophidiomycosis (snake fungal disease) and applies to all snakes.

Techniques and Methods

Aspergillosis (Avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining: (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to aspergillosis and applies to all avian species.

Techniques and Methods

Electrocution (avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to electrocution and applies to all avian species.

Techniques and Methods

Stony coral tissue loss disease (SCTLD) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to Stony Coral Tissue Loss Disease (SCTLC) and applies to several species of scleractinian corals across seven families: Faviidae, Meandrinidae, Merulinidae, Montastraeidae, Astrocoeniidae, Scleractinia, and Siderastreidae. Other species presumed to be susceptible are in Families Agaridiidae, Faviidae, and Pocilloporidae.

Florida

Surface-water and streambed-sediment quality of streams draining surface-mined land reclaimed with sewage sludge, Fulton County, Illinois, 1972-89

Sewage sludge has been used to reclaim surface- mined land in Fulton County, Ill. The sludge contains substantial concentrations of nutrients and significant concentrations of toxic organic compounds. Because of the concern of the fate of these toxins, the U.S. Geological Survey in cooperation with the Metropolitan Water Reclamation District of Greater Chicago began an analysis of historical data in 1989 to compare the quality of water and streambed sediments to determine whether the application of sludge is adversely affecting the quality of surface water. Trend analyses on surface-water-quality data suggest that sludge application is affecting the quality of water in Evelyn Branch in the form of increased concentrations of nitrite plus nitrate and kjeldahl nitrogen. However, the concentrations of these constituents in Evelyn Branch, the stream draining the sludge-application field, are small compared to the concentrations upstream from the project area. Analysis of the streambed-quality data indicates that, for the constituents measured, the application of sludge is not affecting the streambed quality in Evelyn Branch. Trend analyses of streambed constituents did not indicate any adverse effects that could be related to the application of sludge. However, the avail- able data are not adequate to determine if the quality of the streambed has been adversely affected by the sludge application. A refinement of the sampling scheme would be necessary to rule out the possibility of present and future adverse effects of sludge application on streambed quality.

Water-Resources Investigations Report