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USGS2022

Global genetic diversity status and trends: Towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition

Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies, and human well-being. Understanding how biodiversity sustains ecosystems under anthropogenic stressors and global environmental change will require new ways of deriving and applying biodiversity data. A major challenge is that biodiversity data and knowledge are scattered, biased, collected with numerous methods, and stored in inconsistent ways. The Group on Earth Observations Biodiversity Observation Network (GEO BON) has developed the Essential Biodiversity Variables (EBVs) as fundamental metrics to help aggregate, harmonize, and interpret biodiversity observation data from diverse sources. Mapping and analyzing EBVs can help to evaluate how aspects of biodiversity are distributed geographically and how they change over time. EBVs are also intended to serve as inputs and validation to forecast the status and trends of biodiversity, and to support policy and decision making. Here, we assess the feasibility of implementing Genetic Composition EBVs (Genetic EBVs), which are metrics of within-species genetic variation. We review and bring together numerous areas of the field of genetics and evaluate how each contributes to global and regional genetic biodiversity monitoring with respect to theory, sampling logistics, metadata, archiving, data aggregation, modeling, and technological advances. We propose four Genetic EBVs: ( i ) Genetic Diversity; ( ii ) Genetic Differentiation; ( iii ) Inbreeding; and ( iv ) Effective Population Size ( N e ). We rank Genetic EBVs according to their relevance, sensitivity to change, generalizability, scalability, feasibility and data availability. We outline the workflow for generating genetic data underlying the Genetic EBVs, and review advances and needs in archiving genetic composition data and metadata. We discuss how Genetic EBVs can be operationalized by visualizing EBVs in space and time across species and by forecasting Genetic EBVs beyond current observations using various modeling approaches. Our review then explores challenges of aggregation, standardization, and costs of operationalizing the Genetic EBVs, as well as future directions and opportunities to maximize their uptake globally in research and policy. The collection, annotation, and availability of genetic data has made major advances in the past decade, each of which contributes to the practical and standardized framework for large-scale genetic observation reporting. Rapid advances in DNA sequencing technology present new opportunities, but also challenges for operationalizing Genetic EBVs for biodiversity monitoring regionally and globally. With these advances, genetic composition monitoring is starting to be integrated into global conservation policy, which can help support the foundation of all biodiversity and species' long-term persistence in the face of environmental change. We conclude with a summary of concrete steps for researchers and policy makers for advancing operationalization of Genetic EBVs. The technical and analytical foundations of Genetic EBVs are well developed, and conservation practitioners should anticipate their increasing application as efforts emerge to scale up genetic biodiversity monitoring regionally and globally.

Biological Reviews↗
USGS2008

Environmental presence and persistence of pharmaceuticals: An overview

Emerging contaminants (ECs) in the environment – that is, chemicals with domestic, municipal, industrial, or agricultural sources that are not commonly monitored but may have the potential for adverse environmental effects – is a rapidly growing field of research. The use of “emerging” is not intended to infer that the presence of these compounds in the environment is new. These chemicals have been released into the environment as long as they have been in production or, in the case of hormones and other endogenous compounds, since the rise of animal life. What is emerging is the interest by the scientific and lay communities in the presence of these chemicals in the environment, the analytical capabilities required for detection, and the subtle effects that very small concentrations of these chemicals appear to have on aquatic biota. In December 2006, Environmental Science & Technology devoted an entire special issue (volume 40, number 23) to the topic of ECs, illustrating the increased interest in the subject. Within the EGs, one particular class that has seen a substantial increase in research over the past 10 years is pharmaceuticals and personal-care products (PPCPs). This increased research interest can be demonstrated by several means, including requests for proposals from funding agencies, but the clearest indication of a focused effort to understand the introduction, transformation, and potential health and environmental effects of PPCPs and ECs, in general, is the number of published reports. This increase can be shown by examining six environmental journals that regularly publish PPCP-related papers – Chemosphere , Environmental Science & Technology , Environmental Toxicology and Chemistry , Science of the Total Environment , Water Research , and Water Science and Technology . In 1998 there were 22 papers published on pharmaceuticals, antibiotics, or drugs in these 6 journals; by 2006, this number increased sixfold to 132 papers (Figure 1.1). This growth can be attributed to a number of factors. The presence of pharmaceuticals in surface-water samples from Europe and the United States was documented in several sentinel papers. These ground-breaking works encouraged other scientists to examine the rivers, streams, lakes, and reservoirs in their regions for such chemicals. In addition, the intense public attention paid to news reports on the environmental detections of these chemicals and possible effects of aquatic life has made this issue visible to the wastewater-treatment, drinking-water treatment, and regulatory communities. This has driven the funding bodies associated with these communities to fund studies or request proposals that address the presence, fate, and effects of PPCPs in aquatic systems. The release of the first comprehensive reconnaissance of pharmaceuticals and other wastewater contaminants in the United States provides an example of the intense media interest in this topic. Within 6 days on online publication of this study, 72 newspapers across the United States had published articles describing the results, either locally written or based on international media syndicate reports. There also was substantial concurrent coverage by local and national radio and television outlets, including the Cable News Network, ABC World News Tonight , and National Public Radio. A substantial fraction of these news stories may be attributable to press releases and media briefings prior to publication. However, the interest by television and print journalists in reporting the results of a peer-reviewed journal article to the general public was motivated by the recognition that describing the presence of PPCPs in water supplies would be of interest to the public. To better convey the results of the study published by Koplin et al. to the public, a separate general-interest fact sheet was published to summarize the important points of the study. Because PPCPs are commonly and widely used by individuals, there is likely a preexisting, personal identification with these compounds that does not occur for the wide range of other organic and inorganic contaminants whose presence in the environment has previously been described. This greater public “name recognition” makes itself known through the media to the regulatory and technical community and has prompted interest in sponsoring research that defines the composition and concentrations of PPCPs in potential sources and their fate and effects following relase into the environment. Independent of the drivers that potentially fuel the interest in studies of PPCPs, it is clear that PPCP research has grown beyond surface-water studies to examine issues such as: • Presence in other matrices, such as groundwater, landfill leachates, sediments, and biosolids. • Environmental transport and fate in surface water, groundwater, and soils amended with reclaimed water or biosolids. • PPCP source elucidation, such as wastewater treatment plant (WWTP) effluents, confined animal feeding operations (CAFOs), and aquaculture. • Removal during wastewater and drinking-water treatment. • Effects on aquatic ecosystems, terrestrial ecosystems, and human health. The chapters in this book provide an extensive examination of current environmental pharmaceutical research and are divided into three sections: “Occurrence and Analysis of Pharmaceuticals in the Environment,” “Environment Fate and Transformations of Veterinary Pharmaceuticals,” and “treatment of Pharmaceuticals in Drinking Water and Wastewater.” The purpose of this introductory overview chapter is to outline current (2004-2006) knowledge about the presence and concentration of PPCPs as described in the published literature. Previous reviews should be consulted for discussions on pre-2004 publications. Those reviews will provide the reader with a comprehensive introduction to the topic of PPCPs in the environment. This chapter describes the sources of PPCPs and other organic contaminants often associated with human wastewater into the environment, the range of concentrations present in various environmental compartments, and the potential routes of removal/sequestration. An overview of the sources and fate of veterinary pharmaceuticals will be discussed in Chapter 5, “Fate and Transport of Veterinary Medicines in the Soil Environment.”

Book chapter↗
USGS2022

Review of past gas Production attempts from subsurface gas hydrate deposits and necessity of long-term production testing

This paper summarizes the conditions, applied techniques, results, and lessons of major field gas production attempts from gas hydrates in the past and the necessity of longer term production testing with the scale of years to fulfill the gap between the currently available information and the knowledge required for commercial development. The temporal and spatial scales of field production test projects employing depressurization have expanded since 2002. The results from the projects have proved the applicability of these techniques in both onshore and offshore conditions. However, many technical and reservoir condition-related issues have emerged in gas production, and the gap between current status and industrial requirements is still large. Sand control, artificial lift, and related flow assurance issues are common technical issues that impact onshore and offshore production testing operations. Different reservoir responses were observed well by well, and discrepancy between model predictions and actual field measurements were seen, although reasonable matches were made for short-term behaviors. Those observations suggest that temporal change of the wellbore and near-wellbore conditions and reservoir heterogeneity that cannot be fully modeled have caused complex short-term responses to the depressurization operations. To ensure the long-term operational stability and reliability of the prediction technologies for production behaviors that are essential for commercialization of gas hydrate resources, gas hydrate production testing with comparable duration with commercial operations are necessary. Due to the locality of geological conditions in gas hydrate reservoirs, numerous gas production tests will be required to understand the factors controlling gas production.

Journal of Energy and Fuels↗
USGS2024

Supporting climate adaptation for rural Mekong River Basin communities in Thailand

Climate change impacts on large river basins, such as the Mekong River Basin (MRB), are complex due to shared governance and interconnected socioeconomic areas, making them highly vulnerable to change. The MRB, spanning six countries including Thailand, is crucial for the food and economic security of > 60 million people. However, in 2021, Thailand was ranked as the 9th highest risk country affected by climate change. To integrate climate adaptation in Thailand's MRB, we examined the effects of climate change on rapidly developing farmer and fisher communities in northeastern Thailand and explored feasible adaptation options. Using an interdisciplinary approach that included literature review, participatory action methods, and the resist-accept-direct (RAD) framework, we found that climate change is projected to increase temperatures, precipitation, extreme events, erosion, and water clarity, while decreasing heavy sediment transport. These changes negatively impact agriculture, fisheries, human health, and tourism. We identified several adaptation strategies across environmental, ecological, and human health categories to accommodate local needs, such as preventing habitat degradation (e.g., from dams and deforestation), providing fish refuge and passage, and supporting technical capacity. Community-driven adaptation planning and implementation are essential for supporting global sustainable development in a changing climate.

Mitigation and Adaptation Strategies for Global Ch↗
USGS2019

A probabilistic assessment methodology for carbon dioxide enhanced oil recovery and associated carbon dioxide retention

The U.S. Energy Independence and Security Act of 2007 authorized the U.S. Geological Survey (USGS) to conduct a national assessment of the potential volume of hydrocarbons recoverable by injection of carbon dioxide (CO 2 ) into known oil reservoirs with historical production. The implementation of CO 2 enhanced oil recovery (CO 2 -EOR) techniques could increase the U.S. recoverable hydrocarbon resource base. Use of anthropogenic CO 2 in the CO 2 -EOR process could reduce the amount of CO 2 released to the atmosphere by allowing a percentage of the injected CO 2 to remain in reservoir pore space once occupied by produced oil and water or by CO 2 dissolution in oil and water in the reservoir. The USGS has developed a new methodology for the national assessment of technically recoverable oil resources that may be produced by using current CO 2 -EOR technologies. The methodology relies on a proprietary reservoir-level database, the comprehensive resource database (CRD). The CRD incorporates commercially available geologic and engineering data, and USGS-defined play averages or province averages of reservoir data were used to populate incomplete records. Values from the CRD are used to estimate the original oil in place ( OOIP ) for each reservoir. The inputs are reviewed by USGS geologists, particularly when play or province averages have been used. Monte Carlo simulation is used to produce a numerical probability distribution for the OOIP for each reservoir, with the mean defined as the value of the OOIP in the CRD. A reservoir model (CO 2 Prophet, developed for the U.S. Department of Energy by Texaco, Inc.) is used to determine the incremental recovery factors for oil during the CO 2 -EOR process, on an individual reservoir basis. The model is also used to estimate the volume of CO 2 remaining in the reservoir after the CO 2 -EOR process is complete. Empirical decline curve analysis and comparison with data from published papers and reports on CO 2 -EOR projects are utilized to substantiate the simulation results. Numerical distributions of recovery factors are prepared for variations in the reservoir lithology (clastic or carbonate). The distribution of incremental oil is computed by multiplying the appropriate probability distribution of recovery factors by the individual reservoir distribution of the OOIP . A way to estimate the CO 2 remaining in the reservoir after the completion of the CO 2 -EOR process is also included in the methodology. Assessment results will be aggregated to play, petroleum province, regional, and national scales. This assessment methodology has been tested on the Horseshoe Atoll, Upper Pennsylvanian-Wolfcampian play in the Permian Basin Province in Texas; the play consists of 27 reservoirs having at least 2 billion barrels of OOIP that are amenable to the CO 2 -EOR process. The play was selected as a test case because CO 2 -EOR production data and published reports are available for several reservoirs within the play. Preliminary estimates of oil recoverable by implementation of miscible CO 2 -EOR are comparable to those reported in the literature and obtained by reservoir decline curve analysis.

Scientific Investigations Report↗
USGS2023

A conceptual workflow for projecting future riverine and coastal flood hazards to support the federal flood risk management standard

In 2021, the reinstatement of the Federal Flood Risk Management Standard (FFRMS) required federally funded projects to recognize potential increases in flood hazards over their service lives due to climate change or local anthropogenic perturbations. Recognizing that the state of the science had advanced since the implementation guidelines for this standard were published in 2015 (WRC, 2015, Appendix H), an interagency state-of-the-science review committee conceptualized a workflow to guide the mapping and risk communication of projected future flood hazards in both riverine and coastal settings. This five-element workflow connects climate, hydrologic, and hydraulic models, incorporates land and water management impacts and ongoing geomorphic changes, and can be tailored to the unique nature of different agency needs and resources. These conceptual workflows also provide a basis for a Climate-Informed Science Approach (CISA) implementation roadmap that identifies incremental steps for addressing the research and data gaps elucidated in our review. Many of these incremental steps present opportunities for interagency collaboration that would facilitate the rollout of the FFRMS in diverse riverine and coastal settings of the United States. We conduct case-study thought experiments to evaluate the implementation of the riverine and coastal workflows at three different locations in the United States: central Indiana, Galveston, Texas, and a small coastal community in western Alaska (Shaktoolik). Our thought experiments consider different project horizons, data availability, failure consequences, technical training requirements, and computational resources.

Conference Paper↗
USGS2020

Variation of lead isotopic composition and atomic weight in terrestrial materials (IUPAC Technical Report)

The isotopic composition and atomic weight of lead are variable in terrestrial materials because its three heaviest stable isotopes are stable end-products of the radioactive decay of uranium ( 238 U to 206 Pb; 235 U to 207 Pb) and thorium ( 232 Th to 208 Pb). The lightest stable isotope, 204 Pb, is primordial. These variations in isotope ratios and atomic weights provide useful information in many areas of science, including geochronology, archaeology, environmental studies, and forensic science. While elemental lead can serve as an abundant and homogeneous isotopic reference, deviations from the isotope ratios in other lead occurrences limit the accuracy with which a standard atomic weight can be given for lead. In a comprehensive review of several hundred publications and analyses of more than 8000 samples, published isotope data indicate that the lowest reported lead atomic weight of a normal terrestrial materials is 206.1462 ± 0.0028 ( k = 2), determined for a growth of the phosphate mineral monazite around a garnet relic from an Archean high-grade metamorphic terrain in north-western Scotland, which contains mostly 206 Pb and almost no 204 Pb. The highest published lead atomic weight is 207.9351 ± 0.0005 ( k = 2) for monazite from a micro-inclusion in a garnet relic, also from a high-grade metamorphic terrain in north-western Scotland, which contains almost pure radiogenic 208 Pb. When expressed as an interval, the lead atomic weight is [206.14, 207.94]. It is proposed that a value of 207.2 be adopted for the single lead atomic-weight value for education, commerce, and industry, corresponding to previously published conventional atomic-weight values.

Pure and Applied Chemistry↗
USGS2002

Frontier areas and resource assessment: Case of the 1002 area of the Alaska North Slope

The U.S. Geological Survey's 1998 assessment of the 1002 Area of the Arctic National Wildlife Refuge significantly revised previous estimates of the area's petroleum supply potential. The mean (or expected) value of technically recoverable undiscovered oil for the Study Area (Federal 1002 Area, adjacent State waters, and Native Lands) is estimated at 10.4 billion barrels of oil (BBO) and for the Federal 1002 Area the mean is 7.7 BBO. Accumulation sizes containing the oil are expected to be sufficiently large to be of economic interest. At a market price of $21 per barrel, 6 BBO of oil in the Study area is expected to be economic. The Assessment's methodology, results, and the reasons for the significant change in assessments are reviewed. In the concluding section, policy issues raised by the assessment are discussed.

Alaska↗
USGS1989

Streamside habitats in southern forested wetlands: Their role and implications for management

The value of streamside forests to fish and wildlife and the influence of forest management on their value have been recognized in a general sense for decades. However, in today’s climate of increasing environmental regulation and intensive forest management, there is need for more detailed understanding of the value of streamside forests to fish and wildlife. Dickson and Huntley (1987:38) described the problem well when they wrote that “quantitative data on the effects of riparian zones on wildlife populations are insufficient to enable wildlife managers to justify the retention of riparian zones in land-use plans on a biological and economical basis.” Due in large part to the passage of water pollution control legislation, as well as legislation mandating multiple-use management in our national forests, progress is being made. During the last l&15 years, a great deal of research has been directed at understanding the value and appropriate management of the riparian zone (Brouha and Parsons 1985). The vast majority of research on riparian habitats has been conducted in western forests and/or narrow zones in otherwise upland areas. Also, much of the work done in southern forested wetlands has applied to entire floodplain forests. In this paper, we review the literature on streamside habitats within southern forested wetlands and, for reasons described in the next section, we make a distinction between streamside forests and floodplain (or riparian) forests. We also discuss in less detail the value of streamside habitats within other southern forest types, such as pine or mixed pine-hardwood.

General Technical Report↗
USGS2016

Cost implications of uncertainty in CO 2 storage resource estimates: A review

Carbon capture from stationary sources and geologic storage of carbon dioxide (CO 2 ) is an important option to include in strategies to mitigate greenhouse gas emissions. However, the potential costs of commercial-scale CO 2 storage are not well constrained, stemming from the inherent uncertainty in storage resource estimates coupled with a lack of detailed estimates of the infrastructure needed to access those resources. Storage resource estimates are highly dependent on storage efficiency values or storage coefficients, which are calculated based on ranges of uncertain geological and physical reservoir parameters. If dynamic factors (such as variability in storage efficiencies, pressure interference, and acceptable injection rates over time), reservoir pressure limitations, boundaries on migration of CO 2 , consideration of closed or semi-closed saline reservoir systems, and other possible constraints on the technically accessible CO 2 storage resource (TASR) are accounted for, it is likely that only a fraction of the TASR could be available without incurring significant additional costs. Although storage resource estimates typically assume that any issues with pressure buildup due to CO 2 injection will be mitigated by reservoir pressure management, estimates of the costs of CO 2 storage generally do not include the costs of active pressure management. Production of saline waters (brines) could be essential to increasing the dynamic storage capacity of most reservoirs, but including the costs of this critical method of reservoir pressure management could increase current estimates of the costs of CO 2 storage by two times, or more. Even without considering the implications for reservoir pressure management, geologic uncertainty can significantly impact CO 2 storage capacities and costs, and contribute to uncertainty in carbon capture and storage (CCS) systems. Given the current state of available information and the scarcity of (data from) long-term commercial-scale CO 2 storage projects, decision makers may experience considerable difficulty in ascertaining the realistic potential, the likely costs, and the most beneficial pattern of deployment of CCS as an option to reduce CO 2 concentrations in the atmosphere.

Natural Resources Research↗
USGS2012

The Mekong Fish Network: expanding the capacity of the people and institutions of the Mekong River Basin to share information and conduct standardized fisheries monitoring

The Mekong River is one of the most biologically diverse rivers in the world, and it supports the most productive freshwater fisheries in the world. Millions of people in the Lower Mekong River Basin (LMB) countries of the Union of Myanmar (Burma), Lao People’s Democratic Republic, the Kingdom of Thailand, the Kingdom of Cambodia, and the Socialist Republic of Vietnam rely on the fisheries of the basin to provide a source of protein. The Mekong Fish Network Workshop was convened in Phnom Penh, Cambodia, in February 2012 to discuss the potential for coordinating fisheries monitoring among nations and the utility of establishing standard methods for short- and long-term monitoring and data sharing throughout the LMB. The concept for this network developed out of a frequently cited need for fisheries researchers in the LMB to share their knowledge with other scientists and decisionmakers. A fish monitoring network could be a valuable forum for researchers to exchange ideas, store data, or access general information regarding fisheries studies in the LMB region. At the workshop, representatives from governments, nongovernmental organizations, and universities, as well as participating foreign technical experts, cited a great need for more international cooperation and technical support among them. Given the limited staff and resources of many institutions in the LMB, the success of the proposed network would depend on whether it could offer tools that would provide benefits to network participants. A potential tool discussed at the workshop was a user-friendly, Web-accessible portal and database that could help streamline data entry and storage at the institutional level, as well as facilitate communication and data sharing among institutions. The workshop provided a consensus to establish pilot standardized data collection and database efforts that will be further reviewed by the workshop participants. Overall, workshop participants agreed that this is the type of support that is greatly needed to answer their most pressing questions and to enable local researchers and resource managers to monitor and sustain the valuable and diverse aquatic life of the Mekong River.

Mekong River↗
USGS2013

Proceedings of a workshop on American Eel passage technologies

Recent concerns regarding a decline in recruitment of American eels ( Anguilla rostrata ) have prompted efforts to restore this species to historic habitats by providing passage for both upstream migrant juveniles and downstream migrant adults at riverine barriers, including low-head and hydroelectric dams (Castonguay et al. 1994, Haro et al. 2000). These efforts include development of management plans and stock assessment reviews in both the US and Canada (COSEWIC 2006, Canadian Eel Working Group 2009, DFO 2010, MacGregor et al. 2010, ASMFC 2000, ASMFC 2006, ASMFC 2008, Williams and Threader 2007), which target improvement of upstream and downstream passage for eels, as well as identification and prioritization of research needs for development of new and more effective passage technologies for American eels. Traditional upstream fish passage structures, such as fishways and fish lifts, are often ineffective passing juvenile eels, and specialized passage structures for this species are needed. Although designs for such passage structures are available and diverse (Knights and White 1998, Porcher 2002, FAO/DVWK 2002, Solomon and Beach 2004a,b, Environment Agency UK 2011), many biologists, managers, and engineers are unfamiliar with eel pass design and operation, or unaware of the technical options available for upstream eel passage, Better coordination is needed to account for eel passage requirements during restoration efforts for other diadromous fish species. Also, appropriately siting eel passes at hydropower projects is critical, and siting can be difficult and complex due to physical restrictions in access to points of natural concentrations of eels, dynamic hydraulics of tailrace areas, and presence of significant competing flows from turbine outfalls or spill. As a result, some constructed eel passes are sited poorly and may pass only a fraction of the number of eels attempting to pass the barrier. When sited and constructed appropriately, however, eel passes can effectively pass thousands of individuals in a season (Appendix D). technologies for preventing impingement and entrainment mortality and injury of downstream migrant eels at hydropower projects are not well developed. Traditional downstream fish passage mitigative techniques originally developed for salmonids and other species are frequently ineffective passing eels (Richkus and Dixon 2003, EPRI 2001, Bruijs and Durif 2009). Large hydropower projects, with high project flows or intake openings that cannot be fitted with racks or screens with openings small enough to exclude eels, pose significant passage problems for this species, and turbine impingement and entrainment mortality of eels can be as high as 100%. Spill mortality and injury may also be significant for eels, given their tendency to move during high flow events when projects typically spill large amounts of flow. Delays in migration of eels that have difficulty locating and utilizing bypass entrances can also be significant. Therefore, downstream passage technologies are at a much more nebulous state of development than upstream passage technologies, and require further evaluation and improvement before rigorous design guidelines can be established. There have been few studies conducted to evaluate effectiveness of current mitigative measures for both upstream and downstream passage of eels. Research is needed to determine eel migratory timing, behavior, and appropriate mitigation technologies for specific sites and eel life history stages. Both upstream and downstream eel passage structures can be difficult to evaluate in terms of performance, and examples of how evaluation and monitoring can be accomplished were reviewed at the workshop.

Report↗
USGS2021

A roadmap for sampling and scaling biological nitrogen fixation in terrestrial ecosystems

Accurately quantifying rates and patterns of biological nitrogen fixation (BNF) in terrestrial ecosystems is essential to characterize ecological and biogeochemical interactions, identify mechanistic controls, improve BNF representation in conceptual and numerical modelling, and forecast nitrogen limitation constraints on future carbon (C) cycling. While many resources address the technical advantages and limitations of different methods for measuring BNF, less systematic consideration has been given to the broader decisions involved in planning studies, interpreting data, and extrapolating results. Here, we present a conceptual and practical road map to study design, study execution, data analysis and scaling, outlining key considerations at each step. We address issues including defining N‐fixing niches of interest, identifying important sources of temporal and spatial heterogeneity, designing a sampling scheme (including method selection, measurement conditions, replication, and consideration of hotspots and hot moments), and approaches to analysing, scaling and reporting BNF. We also review the comparability of estimates derived using different approaches in the literature, and provide sample R code for simulating symbiotic BNF data frames and upscaling. Improving and standardizing study design at each of these stages will improve the accuracy and interpretability of data, define limits of extrapolation, and facilitate broader use of BNF data for downstream applications. We highlight aspects—such as quantifying scales of heterogeneity, statistical approaches for dealing with non‐normality, and consideration of rates versus ecological significance—that are ripe for further development.

Methods in Ecology and Evolution↗
USGS2017

Designing a high-frequency nutrient and biogeochemical monitoring network for the Sacramento–San Joaquin Delta, northern California

Executive Summary This report is the third in a series of three reports that provide information about how high-frequency (HF) nutrient monitoring may be used to assess nutrient inputs and dynamics in the Sacramento–San Joaquin Delta, California (Delta). The purpose of this report is to provide the background, principles, and considerations for designing an HF nutrient-monitoring network for the Delta to address high-priority, nutrient-management questions. The report starts with discussion of the high-priority management questions to be addressed, continues through discussion of the questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient-monitoring network designs for the Delta. For three example network designs, we assess how they would address high-priority questions that have been identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015). This report, along with the other two reports of this series (Kraus and others, 2017; Downing and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series (Kraus and others, 2017) provides an introduction to the reasons for and fundamental concepts behind using HF monitoring measurements, including a brief summary of nutrient status and trends in the Delta and an extensive literature review showing how and where other research and monitoring programs have used HF monitoring to improve our understanding of nutrient cycling. The report covers the various technologies available for HF nutrient monitoring and presents the different ways HF monitoring instrumentation may be used for both fixed station and spatial assessments. Finally, it presents numerous examples of how HF measurements are currently (2017) being used in the Delta to examine how nutrients and nutrient cycling are related to aquatic habitat conditions. The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the north Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently (2017) operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales, such as within a few hours, but also significant variability at longer timescales such as months or years. This high variability affects calculation of fluxes and loads, indicating that HF monitoring is necessary for understanding and assessing flux-based processes and outcomes in Delta tidal environments.

California↗
USGS1989

Subsurface-water flow and solute transport: federal glossary of selected terms

The purpose of this report is to provide a glossary of selected terms for saturated and unsaturated flow and related processes involved in transport of contaminants in the subsurface. The glossary contains five tables. Table 1 is a list of parameters with associated symbols and units. Tables 2 to 5 are conversion charts. The original manuscript was prepared by Thomas J. Nicholson, U.S. Nuclear Regulatory Commission. It was subsequently examined by the Ground-Water Glossary Working Group and experts within and outside the Federal Government, whose recommendations were accommodated where appropriate in the glossary. It is hoped that the glossary will aid in the communications between soil scientists, hydrologists, and hydrogeologists. The terms defined in the glossary were selected after an extensive survey of glossaries and reports in the areas of (1) ground-water geology, hydraulics, and chemistry, (2) soil-water physics and chemistry, (3) contaminant transport, (4) unsaturated-zone hydrology, (5) chemistry and transport of solutes, and (6) ground-water quality. Some of the definitions have been modified for clarity from a variety of technical sources. Where more than one definition appears for the selected term, the first one was determined by the working group to be the most appropriate general definition, followed by other, more specialized, definitions. Some terms and definitions are not currently in use by all agencies; however, they are included in the glossary because they can be found in the literature. The reader is encouraged to consult with the original source cited for more explanatory comments. Additional regulatory definitions, which are underlined and are taken directly from the Code of Federal Regulations (CFR) and Federal laws (USC), were added following review by the various Federal agencies in May 1986. The definitions and conversion charts are from two principal sources provided herein. The first is the 11Glossary11 compiled by A. I. Johnson in the 1981 report by the American Society of Testing and Materials titled Permeability and Groundwater Contaminant Transport. The second is Manu a 1 40, 11Ground-water Management, 11 produced by the American Society of Civil Engineers in 1985.

Report↗
USGS2007

Climate variation at Flagstaff, Arizona - 1950 to 2007

Much scientific research demonstrates the existence of recent climate variation, particularly global warming. Climate prediction models forecast that climate will change; it will become warmer, droughts will increase in number and severity, and extreme climate events will recur often—desiccating aridity, extremely wet, unusually warm, or even frigid at times. However, the global models apply to average conditions in large grids approximately 150 miles on an edge (Thorpe, 2005), and how or whether specific areas within a grid are affected is unclear. Flagstaff's climate is mentioned in the context of global change, but information is lacking on the amount and trend of changes in precipitation, snowfall, and temperature. The purpose of this report is to understand what may be happening to Flagstaff's climate by reviewing local climate history. Flagstaff is in north-central Arizona south of San Francisco Mountain, which reaches 12,633 feet, the highest in Arizona (fig. 1). At 6,900 feet, surrounded by ponderosa pine forest, Flagstaff enjoys a four-season climate; winter-daytime temperatures are cool, averaging 45 degrees (Fahrenheit). Summer-daytime temperatures are comfortable, averaging 80 degrees, which is pleasant compared with nearby low-elevation deserts. Flagstaff's precipitation averages 22-inches per year with a range of 9 to 39 inches. Snowfall occurs each season, averaging 97 inches annually. This report, written for the non-technical reader, interprets climate variation at Flagstaff as observed at the National Weather Service (NWS) station at Pulliam Field (or Airport), a first-order weather station staffed by meteorologists (Staudenmaier and others, 2007). The station is on a flat-topped ridge surrounded by forest 5-miles south of Flagstaff at an elevation of 7,003 feet. Data used in this analysis are daily measurements of precipitation (including snowfall) and temperature (maximum and minimum) covering the period from 1950, when the station began operation, through spring 2007. Conversations with Byron Peterson and Michael Staudenmaier of the NWS helped us understand the difficulties of collecting consistent weather data, operation of the station, and Flagstaff's climate. Weather is the daily or even instantaneous state of temperature and precipitation. Climate is the average or accumulation of these parameters over longer time scales such as a week, month, or year. Seasonal (winter, spring, summer, and fall) and annual averages of temperature and accumulated precipitation describe the temporal variation of Flagstaff's climate, which is shown graphically with time series (figs. 2, 4, 6, 8-15). These plots show precipitation or temperature on the ordinate plotted against time on the abscissa, which is a year for annually repeating data or the year of a particular season. The plots reveal changing patterns of precipitation and temperature related to droughts, wet episodes, and rising temperatures.

Arizona↗
USGS2019

Conducting and interpreting fish telemetry studies: Considerations for researchers and resource managers

Telemetry is an increasingly common tool for studying the ecology of wild fish, with great potential to provide valuable information for management and conservation. For researchers to conduct a robust telemetry study, many essential considerations exist related to selecting the appropriate tag type, fish capture and tagging methods, tracking protocol, data processing and analyses, and interpretation of findings. For telemetry-derived knowledge to be relevant to managers and policy makers, the research approach must consider management information needs for decision-making, while end users require an understanding of telemetry technology (capabilities and limitations), its application to fisheries research and monitoring (study design), and proper interpretation of results and conclusions (considering the potential for biases and proper recognition of associated uncertainties). To help bridge this gap, we provide a set of considerations and a checklist for researchers to guide them in conducting reliable and management-relevant telemetry studies, and for managers to evaluate the reliability and relevance of telemetry studies so as to better integrate findings into management plans. These considerations include implicit assumptions, technical limitations, ethical and biological realities, analytical merits, and the relevance of study findings to decision-making processes.

Reviews in Fish Biology and Fisheries↗
USGS2025

Chapter 6: Climate change, wildlife, and wildlife habitats in the Oregon Coast Range

Climate change is likely to have profound effects on wildlife species within the Oregon Coast Adaptation Partnership (OCAP) assessment area, although the direction and magnitude of effects are likely to vary across species. Increased mean and extreme temperatures, especially during summer, may cause shifts in plant and animal species ranges, reduce habitat for some temperature-sensitive wildlife, alter plant phenology and the timing of available food resources, and affect species interactions (e.g., predation, competition). Altered timing of precipitation, summer drought, loss of fog, increased flooding events, earlier snowmelt, and rising sea level may reduce plant productivity, increase tree mortality, shift plant species composition, and lead to reduced wildlife habitat and habitat quality for some forests, riparian areas, wetlands, meadows, estuaries, and beaches. In addition, increasing frequency and extent of wildfire and insect outbreaks may reduce the extent of late-successional forest, reduce habitat connectivity, and increase the spread of invasive species. The biggest change expected for the assessment area is an increase in area where climatic conditions favor coastal mixed forest and a large reduction in area favoring montane conifer forest. Although actual changes in forest types may not necessarily occur by the end of the 21st century, climate change may add physiological and behavioral stress to wildlife. Some wildlife species will be able to persist in place and adapt to new conditions; some may be able to migrate to find suitable habitat; and some may be greatly reduced or extirpated from the assessment area or even go extinct. Shifts in major tree and shrub species will play a major role in food, den, and cover availability for wildlife. Rising sea level will reduce low-elevation habitats along the coast. An increase in the frequency of high-severity weather events will increase frequency and magnitude of flooding, including debris flow events. Coupled with increased temperatures during summer, this may reduce or fragment important ecosystems for aquatic and semi-aquatic species. Evaluation of the vulnerabilities of nine wildlife species based on literature reviews suggests that each species has life-history attributes that can lead to resilience or vulnerability to climate change effects. Depending on long-term objectives, several broad adaptation strategies focus on protecting refugia, establishing redundant wildlife strongholds with large-scale connectivity, and promoting structural and biological complexity.

Oregon↗