Search USGS⌕ Search

SEARCH · Search USGS

Results for “Natural History”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 235 records · Page 13Linked to original sources
USGS2023

Genetic structure across isolated Virginia populations of the endangered candy darter (Etheostoma osburni)

Candy darter Etheostoma osburni , a federally endangered non-game fish, has been extirpated from most of its historic range in Virginia and now occurs in four isolated populations in the New River drainage. Understanding of population genetic structure will provide insights into the recent natural history of the species and can inform conservation management. Our objectives were to: characterize population genetic structure, estimate and compare effective population sizes ( N e ), and use this information to infer recent population history. Variation at mitochondrial cytochrome b sequences among 150 individuals showed 10 haplotypes separated by 1–14 mutational steps, some shared and some unique to particular populations. Variation at 12 microsatellite loci among 171 individuals showed lower variation in Dismal Creek than in other populations. All populations showed evidence of having experienced a genetic bottleneck and were highly differentiated from one another based on both types of DNA markers. Population genetic structure was related to stream position in regard to the New River, suggesting that populations were once connected. N e estimates for all populations were less than the 500 recommended to maintain evolutionary potential, but most estimates were greater than the 100 needed for use as source populations. Our findings indicate that habitat management to allow expansion of populations, and translocations to exchange genetic material among populations, may be effective tactics to promote conservation of candy darter in Virginia.

North Carolina, Virginia, West Virginia↗
USGS2016

Abiotic raw-materials in life cycle impact assessments: An emerging consensus across disciplines

This paper captures some of the emerging consensus points that came out of the workshop “Mineral Resources in Life Cycle Impact Assessment: Mapping the path forward”, held at the Natural History Museum London on 14 October 2015: that current practices rely in many instances on obsolete data, often confuse resource depletion with impacts on resource availability, which can therefore provide inconsistent decision support and lead to misguided claims about environmental performance. Participants agreed it would be helpful to clarify which models estimate depletion and which estimate availability, so that results can be correctly reported in the most appropriate framework. Most participants suggested that resource availability will be more meaningfully addressed within a comprehensive Life Cycle Sustainability Assessment framework rather than limited to an environmental Life Cycle Assessment or Footprint. Presentations from each of the authors are available for download.

Resources↗
USGS2020

Discrimination of biological scatterers in polarimetric weather radar data: Opportunities and challenges

For radar aeroecology studies, the identification of the type of scatterer is critically important. Here, we used a random forest (RF) algorithm to develop a variety of scatterer classification models based on the backscatter values in radar resolution volumes of six radar variables (reflectivity, radial velocity, spectrum width, differential reflectivity, correlation coefficient, and differential phase) from seven types of biological scatterers and one type of meteorological scatterer (rain). Models that discriminated among fewer classes and/or aggregated similar types into more inclusive classes classified with greater accuracy and higher probability. Bioscatterers that shared similarities in phenotype tended to misclassify against one another more frequently than against more dissimilar types, with the greatest degree of misclassification occurring among vertebrates. Polarimetric variables proved critical to classification performance and individual polarimetric variables played central roles in the discrimination of specific scatterers. Not surprisingly, purposely overfit RF models (in one case study) were our highest performing. Such models have a role to play in situations where the inclusion of natural history can play an outsized role in model performance. In the future, bioscatter classification will become more nuanced, pushing machine-learning model development to increasingly rely on independent validation of scatterer types and more precise knowledge of the physical and behavioral properties of the scatterer.

Remote Sensing↗
USGS2020

Expert bioblitzes facilitate non-native fish tracking and interagency partnerships

Documenting the distribution and composition of non-native species populations can be challenging, especially when species cross jurisdictional boundaries that require interagency coordination. Herein I report the development of three tools that have been used in Florida over the past seven years to assist with tracking of non-native fishes: 1) an overarching organization to increase coordination and communication amongst stakeholders (Florida Non-Native Fish Action Alliance); 2) regularly-scheduled expert bioblitzes (Fish Slams); and 3) symposia (Fish Chats). Ten Fish Slams were held since 2012, which have included nearly 100 individuals from 20 organizations. Participants have sampled nearly 200 unique sites, capturing 36 non-native fish taxa. These activities have generated over 600 records for the U.S. Geological Survey’s Nonindigenous Aquatic Species database. Many specimens collected during Fish Slams are deposited into natural history museums or used by researchers. Informal interactions amongst colleagues working together in the field, at check-in meetings at the end of the day, and during more structured Fish Chat symposia allow members of various organizations to become acquainted, build trust, and share information and technology, which may then lead to professional collaborations. While this program is focused on non-native fish species in south Florida, I also discuss how the expert bioblitz may be adapted to suit other taxonomic groups and a variety of conservation needs.

Florida↗
USGS2021

Seasonal activity and diets of bats at uranium mines and adjacent areas near the Grand Canyon

Little information exists on the habitat use and feeding ecology of insectivorous bats in arid ecosystems, especially at and near uranium mines in northern Arizona, within the Grand Canyon watershed. In 2015–2016, we conducted mist-netting, nightly acoustic monitoring (>1 year), and diet analyses of bats, as well as insect sampling, at 2 uranium mines (Pinenut and Arizona 1) with water containment ponds. Because of physical barriers and limited general access to areas within the mine yard, mist-netting was limited to outside of the perimeter fence and away from the containment ponds. Mist-netting also occurred at 2 nearby sites that served as proxies to the mines. Bats captured directly at the mines included one pregnant Antrozous pallidus and 3 adult male Parastrellus hesperus . At the proxy sites, we captured 45 individuals identified as A. pallidus , Corynorhinus townsendii , Eptesicus fuscus , Euderma maculatum , Lasionycteris noctivagans , Myotis californicus , Myotis ciliolabrum , P. hesperus , and Tadarida brasiliensis . The nightly and seasonal presence of bats, as shown through acoustic recordings at each mine, coincided with the seasonal migratory and hibernation behaviors of the bat species. Statistical comparisons of acoustic recordings with precipitation data collected over one year show that seasonal monsoon rains generally had a negative effect on the nightly activity and presence of bats. Diets of P. hesperus from both mines were comprised mostly of coleopterans but also included smaller volumes of Hymenoptera, Hemiptera, Lepidoptera, Diptera, and Neuroptera. The diet of A. pallidus was comprised solely of Coleoptera. Diets of bat species from the proxy sites were characteristic of their known feeding ecology, which ranged from the consumption of soft-bodied insects (e.g., moths) by C. townsendii to the consumption of hard-bodied insects (e.g., beetles) by E. fuscus . Ultimately, the increased knowledge of the natural history of bats through multiple methods of data collection allows for a better understanding of complex arid ecosystems. It also provides resources needed for the management of habitat associated with alternative energy, such as uranium mining.

Arizona↗
USGS2016

Graptemys pearlensis Ennen, Lovich, Kreiser, Selman, and Qualls 2010 – Pearl River Map Turtle

The Pearl River Map Turtle, Graptemys pearlensis (Family Emydidae), is a moderate-sized aquatic turtle endemic to the Pearl River drainage of Louisiana and Mississippi. This taxon has long been a cryptic species, as it was considered part of G. pulchra before 1992 and part of G. gibbonsi until 2010. Graptemys pearlensis exhibits sexual dimorphism, with adult females being considerably larger (carapace length to 295 mm) than adult males (CL to 121 mm). In the 1960s and 1970s, the species was commonly found in higher abundance than the sympatric G. oculifera, a federally listed species. However, due to habitat degradation and the precipitous decline of native mollusks, the species is now found in lower numbers than G. oculifera throughout much of its range. The current IUCN Red List status is Endangered; however, very little is known about the natural history and ecology of the species, which will make conservation efforts challenging.

Book chapter↗
USGS2020

Sacramento pikeminnow migration record

Sacramento Pikeminnow Ptychocheilus grandis is a potamodromous species endemic to mid- and low-elevation streams and rivers of Central and Northern California. Adults are known to undertake substantial migrations, typically associated with spawning, though few data exist on the extent of these migrations. Six Sacramento Pikeminnow implanted with passive integrated transponder tags in the Sacramento–San Joaquin Delta were detected in Cottonwood and Mill creeks, tributaries to the Sacramento River in Northern California, between April 2018 and late February 2020. Total travel distances ranged from 354 to 432 km, the maximum of which exceeds the previously known record by at least 30 km. These observations add to a limited body of knowledge regarding the natural history of Sacramento Pikeminnow and highlight the importance of the river–estuary continuum as essential for this migratory species.

California↗
USGS2022

Sandhill crane colt survival in Minnesota

Age-structured population models require reliable estimates of cohort-specific survival rates, yet vital rates of younger age classes are often difficult to estimate because of the logistical challenges of monitoring young animals. As part of a study of sandhill cranes Antigone canadensis in the zone of contact between breeding distributions of the Eastern Population and Midcontinent Population in Minnesota, we monitored first summer survival of 34 sandhill cranes (hereafter colts) by using very-high-frequency and global positioning system–global system for mobile communications transmitters. We estimated daily survival probabilities from 19 to 120 d posthatch by using a generalized linear model accounting for interval censoring, resulting in an estimated period survival rate of 0.52 (90% CI, 0.36–0.71) over summer (100 d). Estimated daily probabilities of survival increased as colts became older and fledged (at 70–75 d posthatch), when they presumably became less vulnerable to predation. Causes of mortality were mostly unknown aside from one case of a collision with a vehicle. There is a scarcity of published colt survival rate estimates for sandhill cranes, and what is available varies widely by study site. Region-specific sandhill crane colt survival rate estimates can inform future management efforts and inform population dynamics research and overall natural history knowledge of sandhill cranes.

Minnesota↗
USGS2012

Use of occupancy models to evaluate expert knowledge-based species-habitat relationships

Expert knowledge-based species-habitat relationships are used extensively to guide conservation planning, particularly when data are scarce. Purported relationships describe the initial state of knowledge, but are rarely tested. We assessed support in the data for suitability rankings of vegetation types based on expert knowledge for three terrestrial avian species in the South Atlantic Coastal Plain of the United States. Experts used published studies, natural history, survey data, and field experience to rank vegetation types as optimal, suitable, and marginal. We used single-season occupancy models, coupled with land cover and Breeding Bird Survey data, to examine the hypothesis that patterns of occupancy conformed to species-habitat suitability rankings purported by experts. Purported habitat suitability was validated for two of three species. As predicted for the Eastern Wood-Pewee ( Contopus virens ) and Brown-headed Nuthatch ( Sitta pusilla ), occupancy was strongly influenced by vegetation types classified as “optimal habitat” by the species suitability rankings for nuthatches and wood-pewees. Contrary to predictions, Red-headed Woodpecker ( Melanerpes erythrocephalus ) models that included vegetation types as covariates received similar support by the data as models without vegetation types. For all three species, occupancy was also related to sampling latitude. Our results suggest that covariates representing other habitat requirements might be necessary to model occurrence of generalist species like the woodpecker. The modeling approach described herein provides a means to test expert knowledge-based species-habitat relationships, and hence, help guide conservation planning.

Avian Conservation and Ecology↗
USGS2020

Preliminary investigation of the critically imperiled Caney Mountain cave crayfish Orconectes stygocaneyi Hobbs III, 2001 (Decapoda: Cambaridae) in Missouri, USA

The Caney Mountain cave crayfish ( Orconectes stygocaneyi ) is one of North America's rarest crayfish, endemic to one cave in southern Missouri, USA. The species is listed as 'critically imperiled' by Missouri, and 'threatened' by the American Fisheries Society. Previously, only 15 crayfish have been observed in Mud Cave, and only two have been collected (for original species description). We aimed to collect the first natural history data on the species and search adjacent caves and springs for additional populations. Twelve visual searches and supplemental trapping over four years, in all seasons, yielded 69 O. stygocaneyi (including 11 young-of-year) observations and capture of 22 crayfish, including one ovigerous female. Visual searches of nearby caves and springs yielded no O. stygocaneyi records. However, multiple surveys of those caves and springs, using environmental DNA detected the species in one additional cave adjacent to Mud Cave, but only during spring high flow events when the caves may be ephemerally connected. Orconectes stygocaneyi 's distribution is among the most restricted of any North American crayfish, and further evaluation of its conservation status designations might be warranted. Long term conservation of O. stygocaneyi would benefit from management practices promoting sustained, unimpacted surface runoff within Mud Cave's recharge area.

Missouri↗
USGS2024

Antibodies to influenza A virus in Lesser (Aythya affinis) and Greater Scaup (Aythya marila) in the USA

Scaup, including both Lesser and Greater ( Aythya affinis and Aythya marila , respectively), are a grouping of populous and widespread North American diving ducks. Few influenza type A viruses (IAV) have been reported from these species despite a high prevalence of antibodies to IAV being reported. Existing virologic and serologic data indicate that IAV infection routinely occurs in scaup, yet it is unknown which IAV subtypes are linked to these infections. In this study, we aimed to gain a more complete picture of IAV natural history in Lesser and Greater Scaup from two coastal flyways in North America in 2015–18 (302 samples from California in the Pacific Flyway and 471 samples from Maryland in the Atlantic Flyway). Low prevalence of active IAV infection was detected by real-time reverse-transcription PCR in Lesser Scaup sampled in Maryland and California (2.8% and 8.1%, respectively). A single IAV (H1N1) was isolated in embryonated chicken eggs from a bird sampled in California. Similarly low levels were observed in Greater Scaup in California (3.3%). Antibodies to the nucleoprotein as detected with a commercial blocking ELISA were observed in all species and flyway combinations. Antibody seroprevalence estimates were higher in adult Lesser Scaup than in juveniles at both the ≤0.5 ( P <0.001, z=–3.582) and ≤0.7 serum-sample-to-negative-control absorbance thresholds ( P =0.003, z=–2.996). Neutralizing antibodies to H1–H12, H14, and H15 were detected using a microtiter virus neutralization assay, with the highest prevalence of antibodies against H1 (38%), H6 (36%), and H11 (35%). The high prevalence of antibodies to IAV and evidence of previous exposure to numerous subtypes are consistent with a high level of population immunity and a low prevalence of infection. These results must be interpreted in the context of season (winter sampling), as results may vary with the annual influx of naïve juvenile birds.

California, Maryland↗
USGS2020

Historical museum collections and contemporary population studies implicate roads and introduced predatory bullfrogs in the decline of western pond turtles

The western pond turtle (WPT), recently separated into two paripatrically distributed species ( Emys pallida and Emys marmorata ), is experiencing significant reductions in its range and population size. In addition to habitat loss, two potential causes of decline are female-biased road mortality and high juvenile mortality from non-native predatory bullfrogs ( Rana catesbeiana ). However, quantitative analyses of these threats have never been conducted for either species of WPT. We used a combination of historical museum samples and published and unpublished field studies shared with us through personal communications with WPT field researchers (B. Shaffer, P. Scott, R. Fisher, C. Brown, R. Dagit, L. Patterson, T. Engstrom, 2019, personal communications) to quantify the effect of roads and bullfrogs on WPT populations along the west coast of the United States. Both species of WPT shift toward increasingly male biased museum collections over the last century, a trend consistent with increasing, female-biased road mortality. Recent WPT population studies revealed that road density and proximity were significantly associated with increasingly male-biased sex ratios, further suggesting female-biased road mortality. The mean body size of museum collections of E. marmorata , but not E. pallida , has increased over the last 100 years, consistent with reduced recruitment and aging populations that could be driven by invasive predators. Contemporary WPT population sites that co-occur with bullfrogs had significantly greater average body sizes than population sites without bullfrogs, suggesting strong bullfrog predation on small WPT hatchlings and juveniles. Overall, our findings indicate that both species of WPT face demographic challenges which would have been difficult to document without the use of both historical data from natural history collections and contemporary demographic field data. Although correlational, our analyses suggest that female-biased road mortality and predation on small turtles by non-native bullfrogs are occurring, and that conservation strategies reducing both may be important for WPT recovery.

Baja California, California, Oregon, Washington↗
USGS1941

Age and growth of the rock bass, Ambloplites rupestris (Rafinesque), in Nebish Lake, Wisconsin

The present study of the age and growth of the Nebish Lake rock bass is another in a series of papers that have been based wholly or in part on materials collected in the course of investigations on the fishes of the lakes of the northeastern highlands, Wisconsin, conducted cooperatively by the Wisconsin Geological and Natural History Survey and the United States Bureau of Fisheries over the periods, 1927-1928 and 1930-1932. The publications have included studies of the age and growth of the rock bass (Wright, 1929), whitefish (Hile and Deason, 1934), yellow perch (Schneberger, 1935), cisco (Hile, 1936a), muskellunge (Schloemer, 1936, 1938), largemouth black bass (Bennett, 1937), common sucker (Spoor, 1938), and smalimouth black bass (Bennett, 1938). A total of five mimeographed reports on the growth of game fish in Wisconsin has been issued by Juday and Schneberger (1930, 1933), Juday and Bennett (1935), and Juday and Schloemer (1936,. 1938). In addition there have appeared two publications on the morphometry of the cisco (Hile 193Gb, 1937), three dealing with the parasites of fishes in the region (Cross 1934, 1935, 1938) and one on the food of fishes (Couey, 1935). A paper by Hile and Juday on the bathymetric distribution of fish will appear simultaneously with the present study of the rock bass. A contribution on the growth of the bluegill by Schloemer will be published in the near future.

Transactions of the Wisconsin Academy of Sciences,↗
USGS1929

Coregonid fishes of the Great Lakes

Wherever they occur, the coregonids, like the salmonids, are important food fishes; but probably nowhere do they attain so much importance in the fisheries as in the region of the Great Lakes. This investigation has as its object the determination of the forms of coregonid fishes that occur in these lakes and the collection of data on their natural history. In addition to its economic significance, the problem is one of scientific interest. It concerns not merely the ecology of the Great Lakes species but it involves also the ultimate consideration of their origin and evolution and of their relationships with one another and with the coregonids of Asia and Europe, as well as with those of other parts of America.

Bulletin of the United States Bureau of Fisheries↗
USGS1967

Infection of the walleye, Stizostedion v. vitreum, of western Lake Erie with Bothriocephalus cuspidatus (Cooper)

In recent years appreciable changes have taken place in the biota and physiochemical conditions in Lake Erie. The accelerated eutrophication of the lake has been accompanied by the near disappearance of several fish species, e.g., blue pike (Stizostedion vitreum glaucum), lake herring (Coregonus artedi), lake trout (Salvelinus namaycush), sauger (Stizostedion canadense), and whitefish (Coregonus clupeaformis). Interest in the biology of the remaining species has increased as means have been sought to preserve their numbers in the lake. This report, which describes the caecal and intestinal parasites of the walleye, Stizostedion vitreum vitreum, is a contribution to the natural history of this fish in western Lake Erie. This study concerns: the type and degree of intestinal parasitic infestations in a single year class of walleyes during their first 3 years of life; seasonal changes in the incidence and maturity of the dominant parasite Bothriocephalus cuspidatus; and the effects of the infestations on the physical condition of the host.

Papers of the Michigan Academy of Science, Arts, a↗
USGS1929

A preliminary report on the growth of the rock bass, Ambloplites rupestris (Rafinesque), in two lakes of northern Wisconsin

For several years the Wisconsin Geological and Natural History Survey has been making a limnological study of lakes in the northern part of the State. Because of the fact that so much has been learned of the physical, chemical and biological conditions in these lakes, the region seems particularly favorable for a study of the growth rates of fishes in relation to environmental factors.

Transactions of the Wisconsin Academy of Sciences,↗
USGS2001

Range expansion of pileated woodpecker in North Dakota

Natural history writings from explorers such as M. Lewis, W. Clark, J. J. Audubon, S. F. Baird, and E. Coues failed to mention the pileated woodpecker (Dryocopus pileatus ) in North Dakota throughout the 1800's. The first published reference to the species was in the early 1900's in the valley of the Red River of the North, part of the Agassiz Lake Plain of eastern North Dakota. Sightings increased in the Agassiz Lake Plain in the mid-1900's but remained rare west of the Agassiz Lake Plain until the late 1900's. Ornithologists suggest that the species has recently established small, permanent populations in the Turtle Mountains, Devils Lake area, and along the Sheyenne River, especially in the Sheyenne National Grassland. I present information that supports the idea that the pileated woodpecker is establishing populations in the aforementioned areas and is moving even farther west. I also document the presence of the pileated woodpecker along the James River and the first record for Stutsman County.

Prairie Naturalist↗
USGS2000

Sea otters past and present perspectives

Sea otters have been an important resource for people living along the North Pacific coast for thousands of years. At least two aspects of the sea otters' natural history have linked them with humans: their pelt and their food habits. Sea otter pelts, arguably the finest in the animal kingdom, were fashioned into garments, particularly in northern latitudes, while the presence of sea otters influenced the availability of some marine invertebrates, like snails, clams and abalone, that provided food for coastal people. In addition, sea otters spurred a growing fur trade after Vitus Bering's explorations of the North Pacific in the early 1700s revealed their widespread abundance. This commercial harvest was instrumental in European exploration and settlement of the Pacific Rim and led to the near-extermination of the sea otter, Enhydra lutris, in following centuries. Largely because of their life history and their direct relations with coastal residents, sea otters are a comparatively well-understood marine mammal. During the past few decades, concern for sea otters has broadened to encompass an interest in global resource conservation and restoration, as well as community ecology. This more recent focus on sea otters now extends to humans far removed from marine environments. Early sea otters evolved about 12 million years ago from Eurasian and African ancestors. They reached the North Pacific by way of two proposed migration paths, one along the Bering Land Bridge between northeastern Asia and northwestern North America and a second from the Atlantic Ocean that entered the Pacific through a channel in the central Americas. Modern sea otters occur only in the North Pacific and have occupied their current range for the past 1 million to 3 million years.

Alaska Geographic↗