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Results for “Journal of Morphology”

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At least 235 records · Page 13Linked to original sources
USGS1976

Geology of the massifs at the Apollo 17 landing site

The Apollo 17 spacecraft landed in a narrow valley that embays mountainous terrain near the southeastern edge of Mare Serenitatis. Two overlapping basin structures underlie Mare Serenitatis: a larger one to the south and a smaller one to the north. The massifs and sculptured hills in the Taurus-Littrow area and the mountains and knobby terrain in the outer Rook ring (third ring) of the Orientale basin are similar in morphology ; the Apollo 17 site lies approximately on the third ring of the southern Serenitatis basin structure. Assuming the third ring represents the approximate rim of the transient cavity of the southern Serenitatis structure, we suggest that ejecta many kilometres thick was deposited in the Taurus-Littrow area by the southern Serenitatis impact. This ejecta is visible in the massifs in the Apollo 17 landing site as discontinuous, irregular lenses of variable lithology. The southern Serenitatis target rocks were predominantly breccias that were invaded by impact-generated melt and redeposited during the southern Serenitatis event.

Journal of Research of the U.S. Geological Survey↗
USGS2014

A new clarification method to visualize biliary degeneration during liver metamorphosis in sea lamprey ( Petromyzon marinus )

Biliary atresia is a rare disease of infancy, with an estimated 1 in 15,000 frequency in the southeast United States, but more common in East Asian countries, with a reported frequency of 1 in 5,000 in Taiwan. Although much is known about the management of biliary atresia, its pathogenesis is still elusive. The sea lamprey ( Petromyzon marinus ) provides a unique opportunity to examine the mechanism and progression of biliary degeneration. Sea lamprey develop through three distinct life stages: larval, parasitic, and adult. During the transition from larvae to parasitic juvenile, sea lamprey undergo metamorphosis with dramatic reorganization and remodeling in external morphology and internal organs. In the liver, the entire biliary system is lost, including the gall bladder and the biliary tree. A newly-developed method called “CLARITY” was modified to clarify the entire liver and the junction with the intestine in metamorphic sea lamprey. The process of biliary degeneration was visualized and discerned during sea lamprey metamorphosis by using laser scanning confocal microscopy. This method provides a powerful tool to study biliary atresia in a unique animal model.

Journal of Visualized Experiments↗
USGS2010

Performance of spread spectrum Global Positioning System collars on grizzly and black bears

Global Positioning System (GPS) telemetry is a prevalent tool now used in the study of large mammals. Global Positioning Systems either store the data on board the collar or contain a remote-transfer system that allows for data recovery at more frequent intervals. Spread spectrum (S–S) technology is a new mode of data transfer designed to overcome interference problems associated with narrow-band very high frequency and ultra high frequency data-transfer systems. We evaluated performance of S–S GPS radiocollars deployed on grizzly ( Ursus arctos ) and black bears ( U. americanus ). We also evaluated variables that influenced GPS fix success rates, with particular focus on animal activity, time of year, and temperature. The S–S GPS collars performed to our expectations and met study objectives; we did not experience any major problems with the data-transfer system. We observed varying rates of fix success that were directly related to recorded activity counts. Using logistic regression, we verified that activity counts were a reasonable measure of resting or feeding–traveling in both bear species. Our results showed that 73% and 79% of missed fixes, respectively, occurred when we predicted black and grizzly bears to be resting. Temperatures measured in the canister of the collar were not correlated with air temperature, suggesting posture and activity influenced canister temperature. Both measures of temperature were predictive of fix success. We did not find that fix success was related to body morphology (i.e., neck circumference, mass, and chest girth), fix interval, position of the GPS antenna relative to the sky, or sex of the bear. We conclude that fix success for both species is strongly related to activity patterns and time of year. Activity counters appear to be a reasonable measure of this behavior, and we recommend researchers consider including an activity-count system when deploying GPS collars. We also recommend researchers explore building separate models of habitat selection based upon categories of activity to account for bias in fix success associated with bear behavior.

Wyoming↗
USGS1991

Segmentation and the coseismic behavior of basin and range normal faults. Examples from east-central Idaho and southwestern Montana, USA

The range-front normal faults of the Lost River and Lemhi Ranges, and the Beaverhead and Tendoy Mountains in east-central Idaho and southwestern Montana have well-preserved fault scarps on Quaternary deposits along much of their lengths. Fault-scarp morphology, the age of deposits displaced by the faults, and the morphology of the range fronts provide a basis for dividing the faults into segments that are typically 20-25 km long. Four characteristics are recognized that help to identify segment boundaries: (1) major en echelon offsets or pronounced gaps in the continuity of fault scarps; (2) distinct, persistent, along-strike changes in fault-scarp morphology that indicate different ages of faulting; (3) major salients in the range front; and (4) transverse bedrock ridges where the cumulative throw is low compared to other places along the fault zone. Only features whose size is measured on the scale of kilometers are regarded as significant enough to represent a segment boundary that could inhibit or halt a propagating rupture. The ability to identify segments of faults that are likely to behave as independent structural entities will improve seismic-hazard assessment. However, one should not assume that the barriers at segment boundaries will completely stop all propagating ruptures.

Journal of Structural Geology↗
USGS2016

Role of habitat complexity in predator-prey dynamics between an introduced fish and larval Long-toed Salamanders ( Ambystoma macrodactylum )

Predation by nonnative fishes has reduced abundance and increased extinction risk for amphibian populations worldwide. Although rare, fish and palatable amphibians have been observed to coexist where aquatic vegetation and structural complexity provide suitable refugia. We examined whether larval long-toed salamanders ( Ambystoma macrodactylum Baird, 1849) increased use of vegetation cover in lakes with trout and whether adding vegetation structure could reduce predation risk and nonconsumptive effects (NCEs), such as reductions in body size and delayed metamorphosis. We compared use of vegetation cover by larval salamanders in lakes with and without trout and conducted a field experiment to investigate the influence of added vegetation structure on salamander body morphology and life history. The probability of catching salamanders in traps in lakes with trout was positively correlated with the proportion of submerged vegetation and surface cover. Growth rates of salamanders in enclosures with trout cues decreased as much as 85% and the probability of metamorphosis decreased by 56%. We did not find evidence that adding vegetation reduced NCEs in experimental enclosures, but salamanders in lakes with trout utilized more highly-vegetated areas which suggests that adding vegetation structure at the scale of the whole lake may facilitate coexistence between salamanders and introduced trout.

Canadian Journal of Zoology↗
USGS2021

The Independent Volcanic Eruption Source Parameter Archive (IVESPA, version 1.0): A new observational database to support explosive eruptive column model validation and development

Eruptive column models are powerful tools for investigating the transport of volcanic gas and ash, reconstructing past explosive eruptions, and simulating future hazards. However, the evaluation of these models is challenging as it requires independent estimates of the main model inputs (e.g. mass eruption rate) and outputs (e.g. column height). There exists no database of independently estimated eruption source parameters (ESPs) that is extensive, standardized, maintained, and consensus-based. This paper introduces the Independent Volcanic Eruption Source Parameter Archive (IVESPA, ivespa.co.uk), a community effort endorsed by the International Association of Volcanology and Chemistry of the Earth’s Interior (IAVCEI) Commission on Tephra Hazard Modelling. We compiled data for 134 explosive eruptive events, spanning the 1902-2016 period, with independent estimates of: i) total erupted mass of fall deposits; ii) duration; iii) eruption column height; and iv) atmospheric conditions. Crucially, we distinguish plume top versus umbrella spreading height, and the height of ash versus sulphur dioxide injection. All parameter values provided have been vetted independently by at least two experts. Uncertainties are quantified systematically, including flags to describe the degree of interpretation of the literature required for each estimate. IVESPA also includes a range of additional parameters such as total grain size distribution, eruption style, morphology of the plume (weak versus strong), and mass contribution from pyroclastic density currents, where available. We discuss the future developments and potential applications of IVESPA and make recommendations for reporting ESPs to maximize their usability across different applications. IVESPA covers an unprecedented range of ESPs and can therefore be used to evaluate and develop eruptive column models across a wide range of conditions using a standardized dataset.

Journal of Volcanology and Geothermal Research↗
USGS2021

Fatal infection with Versteria sp. in a muskrat, with implications for human health

The Taeniidae tapeworms are a family of helminths that have a similar life cycle, with intermediate hosts developing characteristic cysts in visceral organs. We describe here a case in Pennsylvania, USA, of fatal Versteria infection in a muskrat ( Ondatra zibethicus ), which, to our knowledge, has not been reported to develop disease associated with infection. Postmortem examination revealed widespread tissue loss and replacement by solid-bodied cestode larvae with minimal adjacent inflammation in many visceral organs, most severe in the lungs, liver, and brain. Key morphologic features via histology included cephalic structures and short rostellar hooklets, which are characteristic for the genus. Genetic characterization confirmed the cestode as being an undescribed lineage of Versteria that has been implicated as the cause of severe morbidity and mortality in humans and nonhuman primates in North America. Considering the zoonotic significance of this pathogen, our report expands on the limited literature regarding disease caused by Versteria and emphasizes the need to identify the causative tapeworm more accurately, especially in rodent intermediate hosts given that previous reports do not have molecular confirmation of species.

Pennsylvania↗
USGS2008

Gender identification of Grasshopper Sparrows comparing behavioral, morphological, and molecular techniques

Correct gender identification in monomorphic species is often difficult especially if males and females do not display obvious behavioral and breeding differences. We compared gender specific morphology and behavior with recently developed DNA techniques for gender identification in the monomorphic Grasshopper Sparrow (Ammodramus savannarum). Gender was ascertained with DNA in 213 individuals using the 2550F/2718R primer set and 3% agarose gel electrophoresis. Field observations using behavior and breeding characteristics to identify gender matched DNA analyses with 100% accuracy for adult males and females. Gender was identified with DNA for all captured juveniles that did not display gender specific traits or behaviors in the field. The molecular techniques used offered a high level of accuracy and may be useful in studies of dispersal mechanisms and winter assemblage composition in monomorphic species.

Wilson Journal of Ornithology↗
USGS2007

Estimating the bankfull velocity and discharge for rivers using remotely sensed river morphology information

A method to estimate the bankfull velocity and discharge in rivers that uses the morphological variables of the river channel, including bankfull width, channel slope, and meander length was developed and tested. Because these variables can be measured remotely from topographic and river alignment information derived from aerial photos and satellite imagery, it is possible that the bankfull state of flow can be estimated for rivers entirely from remotely-sensed information. Defining the bankfull hydraulics of rivers would also provide a reference condition for remote tracking of dynamic variables including width, stage, and slope, and for quantifying relative change in flow conditions of rivers over large regions. This could provide a more efficient method to inventory and quantify river hydraulic attributes and dynamics.

Journal of Hydrology↗
USGS2014

Comparison of the physical and geotechnical properties of gas-hydrate-bearing sediments from offshore India and other gas-hydrate-reservoir systems

The sediment characteristics of hydrate-bearing reservoirs profoundly affect the formation, distribution, and morphology of gas hydrate. The presence and type of gas, porewater chemistry, fluid migration, and subbottom temperature may govern the hydrate formation process, but it is the host sediment that commonly dictates final hydrate habit, and whether hydrate may be economically developed. In this paper, the physical properties of hydrate-bearing regions offshore eastern India (Krishna-Godavari and Mahanadi Basins) and the Andaman Islands, determined from Expedition NGHP-01 cores, are compared to each other, well logs, and published results of other hydrate reservoirs. Properties from the hydrate-free Kerala-Konkan basin off the west coast of India are also presented. Coarser-grained reservoirs (permafrost-related and marine) may contain high gas-hydrate-pore saturations, while finer-grained reservoirs may contain low-saturation disseminated or more complex gas-hydrates, including nodules, layers, and high-angle planar and rotational veins. However, even in these fine-grained sediments, gas hydrate preferentially forms in coarser sediment or fractures, when present. The presence of hydrate in conjunction with other geologic processes may be responsible for sediment porosity being nearly uniform for almost 500 m off the Andaman Islands. Properties of individual NGHP-01 wells and regional trends are discussed in detail. However, comparison of marine and permafrost-related Arctic reservoirs provides insight into the inter-relationships and common traits between physical properties and the morphology of gas-hydrate reservoirs regardless of location. Extrapolation of properties from one location to another also enhances our understanding of gas-hydrate reservoir systems. Grain size and porosity effects on permeability are critical, both locally to trap gas and regionally to provide fluid flow to hydrate reservoirs. Index properties corroborate more advanced consolidation and triaxial strength test results and can be used for predicting behavior in other NGHP-01 regions. Pseudo-overconsolidation is present near the seafloor and is underlain by underconsolidation at depth at some NGHP-01 locations.

Journal of Marine and Petroleum Geology↗
USGS2015

Detection of Ichthyophonus by chromogenic in situ hybridization

Ichthyophonus hoferi (Plehn & Mulsow 1911 ) is a protistan parasite in the class Mesomycetozoea that infects a large range of marine and freshwater fish (Mendoza, Taylor & Ajello 2002 ; McVicar 2011 ). The broad host and geographic range, which includes both fresh and marine waters of the Northern and Southern Hemispheres, combined with a lack of distinguishing morphological characteristics, have prompted speculation that Ichthyophonus -like organisms in multiple species of fish, as well as reptiles, amphibians, birds and invertebrates, may have been incorrectly classified under a single type species I. hoferi (McVicar 2011 ). At present, only two species, I. hoferi and I. irregularis , are currently recognized within the genus (Rand et al . 2000 ; Mendoza et al . 2002 ). Investigations of ribosomal DNA sequence variation have begun to clarify relationships among Ichthyophonus types (Criscione et al . 2002 ; Rasmussen et al . 2010 ). Here, we will use the term Ichthyophonus to broadly represent all members of the genus regardless of species/subspecies.

Journal of Fish Diseases↗
USGS2014

Identification and characterization of Highlands J virus from a Mississippi sandhill crane using unbiased next-generation sequencing

Advances in massively parallel DNA sequencing platforms, commonly termed next-generation sequencing (NGS) technologies, have greatly reduced time, labor, and cost associated with DNA sequencing. Thus, NGS has become a routine tool for new viral pathogen discovery and will likely become the standard for routine laboratory diagnostics of infectious diseases in the near future. This study demonstrated the application of NGS for the rapid identification and characterization of a virus isolated from the brain of an endangered Mississippi sandhill crane. This bird was part of a population restoration effort and was found in an emaciated state several days after Hurricane Isaac passed over the refuge in Mississippi in 2012. Post-mortem examination had identified trichostrongyliasis as the possible cause of death, but because a virus with morphology consistent with a togavirus was isolated from the brain of the bird, an arboviral etiology was strongly suspected. Because individual molecular assays for several known arboviruses were negative, unbiased NGS by Illumina MiSeq was used to definitively identify and characterize the causative viral agent. Whole genome sequencing and phylogenetic analysis revealed the viral isolate to be the Highlands J virus, a known avian pathogen. This study demonstrates the use of unbiased NGS for the rapid detection and characterization of an unidentified viral pathogen and the application of this technology to wildlife disease diagnostics and conservation medicine.

Journal of Virological Methods↗
USGS2012

Digenean metacercariae of fishes from the lagoon flats of Palmyra Atoll, Eastern Indo-Pacific

Although many studies on the taxonomy of digenean trematodes of marine fishes have been completed in the Eastern Indo-Pacific (EIP) marine ecoregion, only a few have considered metacercarial stages. Here, the results are presented of a taxonomic survey of the digenean metacercariae of fishes from Palmyra Atoll, a remote and relatively pristine US National Wildlife Refuge located 1680 km SSW of Hawaii. Up to 425 individual fish were collected, comprising 42 fish species, from the sand flats bordering the lagoon of the atoll. Quantitative parasitological examinations of each fish were performed. Morphological descriptions of the encountered digenean metacercariae are provided, together with their prevalence, mean intensities, host and tissue-use. Up to 33,964 individuals were recovered representing 19 digenean metacercaria species from eight families. The species composition of digeneans in lagoon fishes at Palmyra Atoll is a subset of what has previously been reported for the EIP. Further, the large diversity and abundance of metacercariae reported in this study highlight the utility of including this group in future ecological research in the EIP marine ecoregion.

Journal of Helminthology↗
USGS2008

Coarse-clast ridge complexes of the Caribbean: A preliminary basis for distinguishing tsunami and storm-wave origins

Coastal gravel-ridge complexes deposited on islands in the Caribbean Sea are recorders of past extreme-wave events that could be associated with either tsunamis or hurricanes. The ridge complexes of Bonaire, Jamaica, Puerto Rico (Isla de Mona), and Guadeloupe consist of polymodal clasts ranging in size from sand to coarse boulders that are derived from the adjacent coral reefs or subjacent rock platforms. Ridge-complex morphologies and crest elevations are largely controlled by availability of sediments, clast sizes, and heights of wave runup. The ridge complexes are internally organized, display textural sorting and a broad range of ages including historical events. Some display seaward-dipping beds and ridge-and-swale topography, and some terminate in fans or steep avalanche slopes. Together, the morphologic, sedimentologic, lithostratigraphic, and chronostratigraphic evidence indicates that shore-parallet ridge complexes composed of gravel and sand that are tens of meters wide and several meters thick are primarily storm-constructed features that have accumulated for a few centuries or millennia as a result of multiple high-frequency intense-wave events. They are not entirely the result of one or a few tsunamis as recently reported. Tsunami deposition may account for some of the lateral ridge-complex accretion or boulder fields and isolated blocks that are associated with the ridge complexes. Copyright ?? 2008, SEPM (Society for Sedimentary Geology).

Journal of Sedimentary Research↗
USGS1970

Morphology of certain viruses of Salmonid fishes. II. In vivo studies of infectious Hematopoietic Necrosis Virus

Juvenile sockeye salmon ( Oncorhynchus nerka ) were injected with the infectious hematopoietic necrosis (IHN) virus, and tissue samples from the anterior kidney, spleen, liver, intestine, and pyloric caeca of moribund fish were prepared for electron microscopy. Bullet-shaped virus particles measuring 158 × 90 mμ were observed in the hematopoietic tissues of the anterior kidney and spleen. Virus particles were also observed in the outer connective tissues of the pancreas or pyloric caeca, or both. No virus was found in the intestine or liver. The healthy appearance of erythrocytes, reticular cells, and endothelial cells in necrotic areas of the spleen and anterior kidney, and the absence of lymphocytes in these areas, suggested that lymphocytes might be one source of the virus.

Journal of the Fisheries Research Board of Canada↗
USGS2016

The geologic history of Margaritifer basin, Mars

In this study, we investigate the fluvial, sedimentary, and volcanic history of Margaritifer basin and the Uzboi-Ladon-Morava (ULM) outflow channel system. This network of valleys and basins spans more than 8000 km in length, linking the fluvially dissected southern highlands and Argyre Basin with the northern lowlands via Ares Vallis. Compositionally, thermophysically, and morphologically distinct geologic units are identified and are used to place critical relative stratigraphic constraints on the timing of geologic processes in Margaritifer basin. Our analyses show that fluvial activity was separated in time by significant episodes of geologic activity, including the widespread volcanic resurfacing of Margaritifer basin and the formation of chaos terrain. The most recent fluvial activity within Margaritifer basin appears to terminate at a region of chaos terrain, suggesting possible communication between surface and subsurface water reservoirs. We conclude with a discussion of the implications of these observations on our current knowledge of Martian hydrologic evolution in this important region.

Journal of Geophysical Research E: Planets↗
USGS1955

A mycosis-like granuloma of fish

Mycoses of systemic distribution are rarely observed in fresh-water fish in this country. In a recent review of atypical cell growths in fishes, Nigrelli cited the only known instance of a mycetoma in a North American fresh-water fish which occurred in the head of fingerling landlocked salmon from an Idaho hatchery. The fungus associated with this granuloma was characterized by a branching septate mycelium. Rucker reported a streptomycete which was pathogenic to blueblack salmon. This organism produced internal nodules containing masses of hyphae but no inflammatory response. A pathogenic fungus has been observed frequently in marine fish, however, and in both marine and fresh-water fish in Europe. This organism was tentatively classified as a Phycomycete in or near the order Chytridiales and was assigned to the genus and species Ichthyophonus hoferi , later reclassified as Ichthyosporidium hoferi . The graduloma described in this report occurs in fresh-water trout and is apparently caused by a budding, yeast-like form with no hyphae which evokes a tremendous inflammatory reaction. Morphologically, the organism does not resemble the previously described Ichthyosporidium. The lesions were first seen accidentally in sections prepared from a diplobacillus infection of brook trout termed “kidney disease.” Subsequently, the granuloma was observed in three widely separated infections involving the diplobacillus in each instance. The histological material was received in a fixed condition; thus, no cultural data was available and the nomenclature and classification of the mycotic organism were not attempted. The present distribution of the disease, however, with its potential threat to domestic fish populations, seemed to warrant a description and discussion of the disease. Efforts are in progress to culture the organism.

Journal of Infectious Diseases↗
USGS1996

Haemoproteus iwa n. sp. in great frigatebirds (Fregata minor [Gmelin]) from Hawaii: Parasite morphology and prevalence

We describe a new species of Haemoproteus Kruse, 1890 from great frigatebirds ( Fregata minor [Gmelin]) captured on Tern Island-French Frigate Shoals and Laysan Island in Hawaii. Parasite prevalence on Laysan Island (35%) was not significantly different than that of Tern Island (36%). On Laysan, prevalence was highest in juveniles (52%), followed by adult males (29%) and adult females (19%). Prevalence on Tern was 36% both for adult females and juveniles, and 28% for adult males. Parasitemia was low (mean < 2 parasites/10,000 red blood cell). Parasitized red cells had significantly greater areas than unparasitized cells. We named this parasite Haemoproteus iwa after the Hawaiian name for frigatebirds (iwa). This is the first documentation of a hemoparasite from tropical pelagic seabirds in Hawaii and the first description of an endemic hemoparasite in the archipelago.

Hawai'i↗