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Effects of thiamine on reproduction of Atlantic salmon and a new hypothesis for their extirpation in Lake Ontario

Previous researchers demonstrated that a mortality in fry (called Cayuga syndrome) of Atlantic salmon Salmo salar from Cayuga Lake (New York) was associated with low levels of thiamine. They reduced the mortality of fry by bathing or injecting fry with thiamine. We injected four to six gravid female Atlantic salmon with either physiological saline (PS) or PS plus thiamine (7 mg/kg weight) 14–23 d before eggs were stripped, fertilized, and incubated in individual lots. Chemical analyses showed that eggs from control and treated salmon contained 1.1 and 1.6 nmol thiamine/g, respectively. Thiamine injections had no significant effect on the percentage of eggs that hatched. Between 700 and 800 Celius degree-days postfertilization, control fry (saline) showed signs of Cayuga syndrome and a 45% incidence of mortality; in contrast, mortality was only 1.9% for fry that received thiamine. By 1,078 degree-days postfertilization, mean mortality of control fry was 98.6%, whereas that for thiamine-injected salmon was 2.1%. This study showed that thiamine injections of prespawning female salmon from Cayuga Lake increased thiamine content of their eggs and prevented the Cayuga syndrome and subsequent mortality of fry. Historically, overfishing, pollution, and building of dams and barriers to spawning migration were suggested as possible causes of the decline of the Atlantic salmon in Lake Ontario and Cayuga Lake. Based on our findings and other reports, we suggest another possible contributing cause of the extirpation of landlocked Atlantic salmon in Lake Ontario and some other inland waters of New York: The entrance of alewives Alosa pseudoharengus containing thiaminase, which induced thiamine deficiency in eggs and increased mortality in fry of the predatory salmon.

Transactions of the American Fisheries Society

Protocol for Monitoring Fish Assemblages in Pacific Northwest National Parks

Rivers and streams that drain from Olympic, Mount Rainier, and North Cascades National Parks are among the most protected corridors in the lower 48 States, and represent some of the largest tracts of contiguous, undisturbed habitat throughout the range of several key fish species of the Pacific Northwest. These watersheds are of high regional importance as freshwater habitat sanctuaries for native fish, where habitat conditions are characterized as having little to no disturbance from development, channelization, impervious surfaces, roads, diversions, or hydroelectric projects. Fishery resources are of high ecological and cultural importance in Pacific Northwest National Parks, and significantly contribute to economically important recreational, commercial, and tribal fisheries. This protocol describes procedures to monitor trends in fish assemblages, fish abundance, and water temperature in eight rivers and five wadeable streams in Olympic National Park during summer months, and is based on 4 years of field testing. Fish assemblages link freshwater, marine, and terrestrial ecosystems. They also serve as focal resources of national parks and are excellent indicators of ecological conditions of rivers and streams. Despite the vital importance of native anadromous and resident fish populations, there is no existing monitoring program for fish assemblages in the North Coast and Cascades Network. Specific monitoring objectives of this protocol are to determine seasonal and annual trends in: (1) fish species composition, (2) timing of migration of adult fish, (3) relative abundance, (4) age and size structure, (5) extent of non-native and hatchery fish, and (6) water temperature. To detect seasonal and annual trends in fish assemblages in reference sites, we rely on repeated and consistent annual sampling at each monitoring site. The general rationale for the repeated sampling of reference sites is to ensure that we account for the high interannual variability in fish movements and abundances in rivers. One underlying assumption is that the monitoring program is designed in perpetuity, and consequently our capability to detect trends substantially increases with time. The protocol describes sampling designs, methods, training procedures, safety considerations, data management, data analysis, and reporting. The allocation of sampling effort represents a balance between ecological considerations, a sound monitoring approach, and practical limitations caused by logistical constraints and a limited annual budget of $55,000. The widespread declines of native fish species in western North America highlights the importance and urgency of understanding trends in fish assemblages from undisturbed habitats. Seasonal and annual trends in fish assemblages will provide insights at the individual, population, and assemblage level. This protocol will allow managers to detect increases and decreases in abundance of priority management species, and occurrence of non-native, hatchery, and federally listed fish. The detection of trends in fish assemblages will allow for specific management actions that may include: implementation of more appropriate fishing regulations, evaluation of existing hatchery releases, control of non-native fish species, and prioritization of habitat restoration projects. Dissemination and communication of scientific findings on North Coast and Cascades Network fish assemblages will be a core product of this protocol, which will have much relevance to decision makers, park visitors, researchers, and educators.

Techniques and Methods

Avian predation on juvenile and adult Lost River and Shortnose Suckers: An updated multi-predator species evaluation

Previous research suggests that predation by piscivorous colonial waterbirds may negatively influence the survival of Lost River Suckers (LRS) Deltistes luxatus and Shortnose Suckers (SNS) Chasmistes brevirostris in the Upper Klamath Basin (UKB), USA. However, estimates of predation from past studies, which were based on suckers with PIT tags, represent minimum estimates of sucker mortality because analyses did not account for the proportion of tags that were consumed by birds and deposited beyond their breeding colony. To address this uncertainty, we fed PIT-tagged suckers to American white pelicans Pelecanus erythrorhynchos to estimate deposition probabilities. A hierarchical Bayesian model was then used to estimate predation rates (percentage of available tagged fish that were consumed) on juvenile suckers that were released as part of the Sucker Assisted Rearing Program (SARP) and on wild juvenile and adult LRS and SNS during 2009–2020. Pelican deposition probabilities were estimated to be 0.47 (95% credible interval = 0.36–0.60), indicating that for every 100 tags consumed, 47 tags on average were deposited on breeding colonies by birds. Deposition-corrected estimates of predation rates were approximately two times greater than those previously reported and ranged annually from 4.3% (95% credible interval = 2.9–6.7%) to 8.5% (6.3–12.7%) on SARP juvenile suckers, from 4.3% (0.9–13.2%) to 10.5% (3.8–24.5%) on wild juvenile suckers, and from 0.1% (<0.1–0.3%) to 7.2% (2.8–16.4%) on adult suckers, depending on species and location. Results suggest that predation by colonial waterbirds, although not the original cause of sucker declines, was a substantial source of sucker mortality in some years. Future studies should consider models that jointly estimate both predation and survival and models that include environmental factors that potentially influence sucker susceptibility to avian predators in the UKB.

California, Oregon

Biology and conservation of the common murre in California, Oregon, Washington, and British Columbia: Vol. 1, Natural history and population trends

Over the past 30 years, the common murre ( Uria aalge californica ) has been recognized as a prominent indicator of marine conservation issues in California, Oregon, Washington, and British Columbia, especially regarding oil pollution, certain fisheries, and human disturbance. To assist the effective management of the common murre and the marine environments in which they live, this summary of available information on the biology and regional status of the common murre has been sponsored by the U.S. Fish and Wildlife Service (Division of Migratory Bird Management). In Volume 1 (Chapter 1), the natural history of the common murre is summarized, drawing heavily on breeding studies from the South Farallon Islands, California, plus a host of detailed breeding studies from the North Atlantic Ocean. Population trends of the common murre are summarized in Volume 1 (Chapter 2), focusing on changes in whole-colony counts determined from aerial photographs between the late 1970s and 1995 in California, Oregon and Washington. Historical data and human impacts to murre colonies since the early nineteenth century are also summarized. Volume 2 will summarize population threats, conservation, and management. Information presented in Volume 1 has been obtained and recorded by a large number of researchers and natural historians over two centuries. From the 1960s to 1995, most work in California, Oregon, and Washington was sponsored by the U.S. Fish and Wildlife Service, Minerals Management Service, and California Department of Fish and Game. Important breeding biology studies were conducted at the South Farallon Islands (Farallon National Wildlife Refuge) by the Point Reyes Bird Observatory, in coordination with the U.S. Fish and Wildlife Service (San Francisco Bay National Wildlife Refuge). Colony surveys in California were conducted mainly by the U.S. Fish and Wildlife Service (San Francisco Bay National Wildlife Refuge), U.S. Geological Survey (Western Ecological Research Center, Dixon Field Station), Humboldt State University, and University of California (Santa Cruz). Colony surveys in Oregon and Washington were conducted mainly by the U.S. Fish and Wildlife Service (Oregon Coast National Wildlife Refuge and Washington Maritime National Wildlife Refuges). In British Columbia, most work from the 1960s to 1995 was sponsored and conducted by the Canadian Wildlife Service and Royal British Columbia Museum.

British Columbia, California, Oregon, Washington

Effects of climate change on tidal marshes along a latitudinal gradient in California

Public Summary The coastal region of California supports a wealth of ecosystem services including habitat provision for wildlife and fisheries. Tidal marshes, mudflats, and shallow bays within coastal estuaries link marine, freshwater and terrestrial habitats, and provide economic and recreational benefits to local communities. Climate change effects such as sea-level rise (SLR) are altering these habitats, but we know little about how these areas will change over the next 50–100 years. Our study examined the projected effects of three recent SLR scenarios produced for the West Coast of North America on tidal marshes in California. We compiled physical and biological data, including coastal topography, tidal inundation, plant composition, and sediment accretion to project how SLR may alter these ecosystems in the future. The goal of our research was to provide results that support coastal management and conservation efforts across California. Under a low SLR scenario, all study sites remained vegetated tidal wetlands, with most sites showing little elevation and vegetation change relative to sea level. At most sites, mid SLR projections led to increases in low marsh habitat at the expense of middle and high marsh habitat. Marshes at Morro Bay and Tijuana River Estuary were the most vulnerable to mid SLR with many areas becoming intertidal mudflat. Under a high SLR scenario, most sites were projected to lose vegetated habitat, eventually converting to intertidal mudflats. Our results suggest that California marshes are vulnerable to major habitat shifts under mid or high rates of SLR, especially in the latter part of the century. Loss of vegetated tidal marshes in California due to SLR is expected to impact ecosystem services that are dependent on coastal wetlands such as wildlife habitat, carbon sequestration, improved water quality, and coastal protection from storms.

California

Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2024 through December 2024

We sampled juvenile wild Oncorhynchus mykiss (Steelhead Trout) in headwater streams of the Wind River, Washington, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. Additionally, this sampling provides an index of abundance of non-native Brook Trout Salvelinus confluentus . We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over 25 years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an inadequate adult ladder and contributed to increased water temperatures, to near lethal levels for salmonids. Data from our study, and companion work by WDFW, are contributing to the Columbia Basin Fish and Wildlife Program (2009) Research, Monitoring, and Evaluation (RM&E) Strategy of Fish Population Status Monitoring. Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2024, we PIT-tagged 2,075 Steelhead Trout parr (age-0 and age-1), in the Trout Creek and upper Wind River watersheds. Age-0 and age-1 parr were at high abundance due to strong spawner numbers in 2023 and 2024 (Estimate of 932 in 2023; and a moderate number of spawners in 2024 though an estimate is not available at this time; 24-year median = 619; Charlie Cochran, WDFW Fish Biologist, personal commun., 2025). An additional 100 parr (age-0 and age-2 or older) were tagged to provide fish for estimating detection efficiencies at PTISs. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trapping, instream PTISs and Columbia River mainstem PIT-tag detection. We maintained and upgraded six instream PTISs to detect PIT-tagged Steelhead Trout parr, smolts, and adults, providing data for population assessments, and life-cycle research. Detection data from PIT-tagged adult Steelhead Trout at our four primary PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Most adult Steelhead detected were tagged by WDFW at an adult trap in the lower Wind River and some as smolts at screw traps. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during eight of the past ten years and have exceeded 97% at our primary PTIS in the Wind River during nine of the past ten years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. Detections at the instream PTISs have shown trends of age-0 and age-1 Steelhead Trout parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Our data suggest that most fish from a cohort that migrate downstream will do so at age-1 for additional rearing in the subbasin. We have estimated that from 15% to 56% of parr tagged as age-0 fish in headwater areas make downstream migrations at age-1 for additional rearing (median = 29%). We have estimated that from 1% to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall (median = 3.5%): this is especially pronounced in the upper Wind River portion of the watershed (median 10%). These findings raise questions about parr rearing habitat and whether migrations are density- or habitat-quality driven, and answers to such questions are long-term goals of this study as active and passive habitat restoration occurs. Repeat sampling at sites in the subbasin within and between years has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer have been similar across the subbasin, though slightly lower in the Trout Creek watershed (Trout Creek sites, 0.57 - 1.25%/day, Wind River sites = 0.94 – 2.48%/day). Summer growth rates have been lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed (Trout Creek sites, = 0.03 - 0.14%/day, Wind River sites = 0.05 – 0.19%/day). Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. During 2024 range of mean daily relative change in weight from the previous year for age-0 tagged fish was: Trout Creek sites = 0.96 – 1.41%/day, Wind River sites = 0.80 – 1.30 %/day; and for age1 tagged fish was: Trout Creek sites = 0.37 - 0.50 %/day, Wind River sites = no age-1 tagged recaptures. Non-native Brook Trout are present in the subbasin, chiefly the Trout Creek watershed. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2024 (range of decrease = 19 - 82%). Percent-of-catch (of 64 samples, 52 < 10%; 3 > 20%) and number of Brook Trout at the Trout Creek sites from 2011 through 2024, though variable, have generally declined. Habitat restoration evaluation efforts are critical to ensure efficient use of money and resources but require long-term monitoring of population metrics. Detailed viable salmonid population and life-history data, such as that provided by PIT-tagging and instream PTIS networks inform fisheries policy and management and enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek and proposed major instream habitat restoration in the upper Wind River.

Washington

Pop-up archival transmitting (PAT) tags: A method to investigate the migration and behavior of Pacific halibut ( Hippoglossus stenolepis ) in the Gulf of Alaska

Pop-up archival transmitting (PAT) tags provide a fisheries-independent method of collecting environmental preference data (depth and ambient water temperature) and migration distance. In this study, we evaluate the use of pop-up archival transmitting tags as a method to investigate demersal fish. We report the results from eight pop-up archival transmitting tagged Pacific halibut Hippoglossus stenolepis (from 107 to 165 cm FL) that were released in and around Resurrection Bay, Alaska. Commercial fishermen recovered three tags, while five tags transmitted data to Argos satellites. Horizontal migration was not consistent among fish as four Pacific halibut remained in the vicinity of release while the other four traveled up to 358 km from the release site. Vertical movement was not consistent among fish or over time; however, they spent most of their time at depths of 150 to 350 m. The minimum and maximum depths reached by any of the Pacific halibut were 2 m and 502 m, respectively. The fish preferred water temperatures of approximately 6°C, but experienced temperatures between 4.3 and 12.2°C. Light attenuation with depth prevented geolocation software and light sensing hardware from accurately estimating geoposition for the majority of days. The methods, adapted from investigations on large pelagic fish, proved to be effective for studying Pacific halibut in the northern Gulf of Alaska. PAT tags allowed us to obtain high accuracy locations of the fish at the end of the tag deployments as well as preliminary data to identify approximate seasonal locations and to characterize their depth and temperature characteristics. By using PAT tags, we will be able to ensure tag returns during the winter season (which is closed to fishing) and gain valuable biological information even if fish migrate large distances or to unexpected locations.

Alaska Fishery Research Bulletin

Book review: Proceedings of the First International Snakehead Symposium

Snakehead fishes (family Channidae) are among the most maligned aquatic invasive species in the USA and some other countries where they have been introduced outside of their native range in Asia and Africa. Nevertheless, snakeheads continue to be widely exploited in the live‐food trade in aquaculture and wild‐capture fisheries, are highly sought by anglers, and are also popular in the aquarium trade (Courtenay and Williams 2004). The Northern Snakehead Channa argus is the most widespread of the three channid species that are currently naturalized in the USA. This species has generated much concern and controversy, a situation that is partly fueled by sensational media coverage and B‐grade science fiction horror films, such as “Frankenfish,” “Snakehead Terror,” and “Snakehead Swamp.” Media reports of snakehead introductions are often replete with provocative terms, such as “vicious,” “villain,” “voracious,” “monster,” “diabolical,” and even “ecological Armageddon.” When snakeheads first appeared in natural waters of the USA, fisheries professionals became increasingly interested in their status. Established populations rapidly expanded in the mid‐Atlantic region and Arkansas, with scattered reports of introduced snakeheads from isolated locations in Hawaii, California, North Carolina, Florida, the Upper Midwest, and New England. In 2002, snakeheads were added to the list of injurious fishes under the Lacey Act, thereby prohibiting their importation or transport across state lines without a permit. This symposium was conceived by the editors and other concerned fisheries professionals of the Mississippi River Basin Panel on Aquatic Invasive Species. The mission of the symposium, held in Alexandria, Virginia, in July 2018, was to bring together experts on snakehead biology and ecology and to synthesize existing information into summary papers. In this book, 35 authors contributed to 15 peer‐reviewed articles that detail the current state of knowledge about snakehead introductions in the USA. Additionally, 16 abstracts are included from meeting presentations that were not accompanied by full‐length manuscripts. Also included is a summary of a facilitated symposium panel discussion featuring eight experts representing state and federal natural resource agencies and private fishing organizations. The book is organized into six sections. In the first section (Distribution), three papers provide an overview of the Channa species introduced into the USA and historical accounts of occurrence and dispersal of the Northern Snakehead in the mid‐Atlantic region and Arkansas. The second section (Biology/Ecology) consists of two articles that examine growth and energetics of Northern Snakehead populations and two papers that investigate diet, diel feeding activity, and movement of this species in the Potomac River drainage. The third section (Monitoring/Response) includes a paper that models range expansion of the Northern Snakehead in the southeastern USA based on occurrence data and environmental conditions. Also included in this section is a paper summarizing an environmental DNA study to assess the status and range of the Bullseye Snakehead C. marulius in southern Florida. The fourth section (Management/Control) is comprised of four papers that address harvest, age and growth, and development of a stock–recruitment model to inform management decisions regarding control and mitigation for Northern Snakehead populations in the greater Chesapeake Bay area. The fifth section (Perspectives) includes a paper on the history of snakehead introductions in Japan and a thought‐provoking social commentary on the human dimensions of Northern Snakehead management. Abstracts in the final section provide brief summaries of a diversity of snakehead studies, including aspects of distribution, ecology, behavior, control and monitoring efforts, public outreach, and pathology. The summary of the panel discussion is an engaging dialogue about the challenges of snakehead management in the context of conflicts regarding snakeheads as injurious versus their value as game and food species. Most of this book is focused on the Northern Snakehead. Much has been done to document snakehead distributions and certain aspects of snakehead biology, such as diets, age, and growth. Less research has been devoted to understanding the ecological impacts of snakeheads to native aquatic communities and ecosystems. This book would have benefited from a chapter summarizing the current systematics and diversity of the Channidae to inform fisheries biologists about the morphological characteristics of the family, approximate numbers of genera and species, and taxonomic instability. Exemplifying the latter, recent molecular and morphological evidence indicates uncertainty regarding identification of the feral snakehead population in Florida (Adamson and Britz 2019). Those authors suggest that this population may have originated from western Thailand, a possibility that could have implications for understanding historical pathways of snakehead introductions into the USA. In comparison with many published AFS symposia, this volume is relatively narrow in scope and lacks cohesive integration. It will primarily be of interest to those fisheries professionals engaged in the study of snakeheads as well as other nonnative species for which there are contrasting social values regarding their management: whether to monitor and attempt control or eradication efforts or to maintain populations for harvest as game or food species. The book should serve to identify information gaps and guide future research.

Transactions of the American Fisheries Society

Surficial sediment character of the New York-New Jersey offshore continental shelf region: A GIS compilation

Broad continental shelf regions such as the New York Bight are the product of a complex geologic history and dynamic oceanographic processes, dominated by the Holocene marine transgression (>100 m sea-level rise) following the end of the last Pleistocene ice advance ~ 20,000 years ago. The area of the U.S. Exclusive Economic Zone (U.S. EEZ) territory, extending 200 nautical miles seaward from the coast, is larger than the continental U.S. and contains submerged landforms that provide a variety of natural functions and societal benefits, such as: critical habitats for fisheries, ship navigation and homeland security, and engineering activities (i.e. oil and gas platforms, pipeline and cable routes, potential wind-energy-generation sites). Some parts of the continental margins, particularly inner-continental shelf regions, also contain unconsolidated hard-mineral deposits such as sand and gravel that are regarded as potential aggregate resources to meet or augment needs not met by onshore deposits (Williams, 1992). The present distribution of surficial sediment off the northeastern United States is shaped from the deposits left by the last glaciation and reflects the cumulative effects of sediment erosion, transport, sorting, and deposition by storm and tidal processes during the Holocene rise in sea level. As a result, the sediments on the sea floor represent both an historical record of former conditions and a guide to possible future sedimentary environments. The U.S. Geological Survey (USGS) through the Coastal and Marine Geology Program, in cooperation with the University of Colorado and other partners, has compiled extant sediment character and textural data as well as other geologic information on the sea floor from all regions around the U.S. into the usSEABED data system (Reid and others, 2005; Buczkowski and others, 2006; Reid and others, 2006). The usSEABED system, which contains information on sediment grain size and lithology for more than 340,500 stations within the U.S. EEZ. has been developed and populated with data as part of the USGS Marine Aggregate Resources and Processes and the National Benthic Habitats projects in order to provide the base-line data needed to update the current maps of offshore surficial geologic character and sediment distribution. The maps are also used to characterize benthic sea floor environments important for marine ecosystems. U.S. Geological Survey, Data Series 118 (Reid and others, 2005), of the usSEABED data release series, represents the combined efforts of the USGS and several other government agencies to provide a unified resource for accessing and preserving records of U.S. east coast sea floor geologic information and sediment texture data. For this present report, we have chosen to focus on the New York-New Jersey region, an area that has been intensely studied by the USGS for many years to address many complex issues. This report illustrates the uses of the usSEABED database for GIS applications, while offering additional insight into the resources and data available from the USGS and its collaborative institutions. This report is based on data contained in U.S. Geological Survey Data Series 118 (Reid and others, 2005) and shows an assortment of example GIS products that are possible using usSEABED. All data are intended to be GIS-ready and should not require any additional cleanup, formatting, or renaming of fields in order to use the data in a Geographic Information System. This project employs the Environmental Systems Research Institute's (ESRI) ArcView™ software. Many of these maps were made as part of the ongoing USGS study to assess marine aggregate resources offshore New York and New Jersey, but these maps can serve many other purposes. The marine science community, educators, students and others are encouraged to use these data to generate GIS products for their own purposes. The objectives of the Marine Aggregate Resources and Processes project are to produce a series of new geologic maps and reports of the sea floor that will provide scientific insights into the character and geologic development of U.S. continental margins and to use these maps and information to assess the potential availability of offshore sand and gravel resources. The mapping and aggregate resource assessments are being conducted on a national scale using the usSEABED data base as described in Williams and others (2003). Potential uses for these data include: (1) defining the geological variability of the sea floor in relation to benthic habitat diversity; (2) improving our understanding of the processes that control the distribution and transport of bottom sediments and benthic habitats; (3) locating aggregate resources for beach nourishment and industrial applications; and (4) providing a detailed geospatial framework for future marine science research, monitoring, and management activities. The initial assessments are in progress for the New York Bight and Louisiana offshore areas.

New Jersey, New York

Guadalupe Bass flow-ecology relationships; with emphasis on the impact of flow on recruitment

Guadalupe Bass Micropterus treculii is an economically and ecologically important black bass species endemic to the Edwards Plateau ecoregion and the lower portions of the Colorado River in central Texas. It is considered a fluvial specialist and as such, there are concerns that the increasing demands being placed upon the water resources of central Texas by growing human populations have the potential to negatively impact Guadalupe Bass populations. Therefore, this study assessed the relationship between Guadalupe Bass growth, feeding ecology, and streamflow. Sagittal otoliths were removed from Guadalupe Bass collected from throughout their range during 2015-2017 and used to estimate the age and back-calculate the growth trajectory of each individual. Additionally, young-of-year (YOY) Guadalupe Bass were collected every 10-14 days from two second-order streams, the North Llano River and South Llano River, in the Colorado Basin on the Edwards Plateau. Stomach contents of these individuals were identified and the effect of streamflow on the occurrence of the taxa comprising the stomach contents assessed. Guadalupe Bass growth was greater in the Colorado and Guadalupe River basins, independent of stream order, and tended to increase with increasing stream order within a basin. Growth was higher in higher stream orders and during years with stable and lower spring and summer monthly median flows, lower minimum and maximum flows, slower rise and fall rates, and higher baseflows. Growth was not influenced by years with higher monthly median flows in winter. These results would seem to contradict previous research, but more likely represent a fuller picture of how Guadalupe Bass respond to flow conditions. The disagreement between the current study and past studies seem to be attributable, at least in part, to the fact that previous studies were conducted during a period of extensive drought, while the current study was conducted during relatively wet conditions. Taken together with previous studies, the current study suggests that Guadalupe Bass growth is sensitive to flow conditions and is lower in years with flow conditions that fall outside a basin- and stream order-specific optimal range for the species. A total of 21 unique taxonomic groups were recovered from the stomachs of YOY Guadalupe Bass collected from the North Llano River and South Llano River. Aquatic insects, especially larval mayflies (Ephemeroptera), damselflies (Odanata: Zygoptera), and caddisflies (Trichoptera), were the most frequently encountered taxa. While there was no difference between the two rivers in stomach content composition, there was a strong longitudinal gradient in both systems with aquatic insects predominating at upstream sample sites and fishes being more common at downstream sites. Stream discharge during the 24 hours prior to collection did not have any influence on the probability of a taxa being found in Guadalupe Bass stomachs. The results of this study support efforts to manage Guadalupe Bass populations at a sub-watershed scale and suggests that populations occupying the same stream order within a basin are likely to have similar responses to annual flow conditions. In addition, these results indicate that the lower Colorado River population may inhabit a unique set of conditions that has supported the development of a trophy Guadalupe Bass fishery. Further, this study highlights the need to incorporate a sufficient range of annual flow conditions to ensure that the influence of stream flow on fish growth is adequately assessed. While interannual variation in growth rates seem to be capable of serving as a proxy for recruitment and year-class strength, long-term monitoring of recruitment paired with assessment of growth is necessary to further clarify the relationship between population density, flow regime, recruitment and growth and allow the construction of predictive models.

Texas

Survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam, Northern California, 2007

This report describes a study of survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam in 2006. This was the second year of a multi-year study with the goal of determining the effects of discharge at Iron Gate Dam on survival of juvenile coho salmon downstream. The study was a collaborative effort among U.S. Geological Survey (USGS), U.S. Fish and Wildlife Service (USFWS), and the Yurok and Karuk Tribal Fisheries Departments. The goals of the study included: 1) estimating the survival of wild and hatchery juvenile coho salmon in the Klamath River downstream from Iron Gate Dam, 2) determining the effects of discharge and other covariates on their survival and migration, and 3) determining if fish from Iron Gate Hatchery could be used as surrogates for the limited source of wild fish. The major findings of the study in 2006 include: River discharges during the 2006 study period (4 April through 21 July 2006) were among the greatest on record. Average daily discharge at Iron Gate Dam was 3,956 cubic feet per second (cfs) and ranged from 997 to 10,300 cfs. Discharge at Iron Gate Dam was positively correlated with discharges of tributaries downstream due to the above average water year and frequent occurrence of spill at Iron Gate Dam. Average daily discharge near the estuary was 25,789 cfs and ranged from 4,740 to 50,600 cfs. This study was based on hatchery fish taken directly from a tank at Iron Gate Hatchery and wild fish captured in a rotary trap on the Shasta River. Releases of both groups began on 4 April when the catch of wild fish in California Department of Fish and Game‟s Shasta River rotary trap increased, but trap catches varied throughout the study period, resulting in differences in release dates of hatchery and wild fish. A total of 211 hatchery fish were released from 4 April through 26 May. Wild and hatchery fish released on a regular schedule between 25 April and 16 May 2006 were used in comparisons of the survival and migration of hatchery (N = 120) and wild (N = 162) fish. Additional analyses were performed using hatchery fish from all dates. The data and models did not support clear differences between survivals of hatchery and wild fish released on common dates, so estimates of reach survivals were made after pooling these data. Estimates of survival were lowest in the Iron Gate Dam to Scott River reach (0.813) and greatest in the Salmon River to Trinity River reach (1.000). The overall survival from river kilometer 309 (Iron Gate Hatchery) to river kilometer 33 was 0.653 (95% CI 0.578 to 0.729). Estimates of survival based on all hatchery fish releases were similar to those from release dates common to hatchery and wild fish and are similar to those in other river systems over similar distances. The migrations of hatchery and wild fish were different in the uppermost sections of the study area and were similar thereafter. A lag between release and migration, primarily upstream from the Scott River (river kilometer 234), was present in hatchery fish to a greater extent than in wild fish, resulting in differences in migration rates. Fish from both origins spent more time between release and the Scott River than in individual reaches downstream, and this was the only reach in which travel times of fish increased as discharge decreased. The travel times of hatchery and wild fish between sites were statistically similar downstream from Indian Creek (river kilometer 178). There were differences and similarities in the analyses of the effects of covariates on survivals of hatchery and wild fish. The models of covariate effects based on hatchery and wild fish released on common dates indicated effects on wild fish survival that were not supported in data from hatchery fish. However, when the entire suite of hatchery fish releases were used the results of the analyses were similar to those based on wild fish. In both instances the effects of temperature and release date were primarily in the first reach, the reach fish of both origins spent most of their time within. The signs of the effects of these covariates differed among the fish origins (negative for wild and positive for hatchery fish), presumably due to differences in their migrations in the first reach. The effects of dam discharge on survivals of hatchery and wild fish were generally similar (positive relation), and the effects on hatchery, and to a lesser extent wild, fish were largely downstream from the Scott River. This is likely due to the prolonged residence of the naïve hatchery fish, and to a lesser extent, migrant wild fish between release and the Scott River. Inasmuch as the differences between hatchery and wild fish we observed were likely those of migrants vs. non-migrants, the use of hatchery fish captured as they are migrating downstream, rather than those directly from hatchery tanks (i.e., naïve), may improve similarities between hatchery and wild fish in future studies. The data and models used in 2006 do not support the use of naïve hatchery fish as surrogates for migrant wild fish in determining the effects of discharge on survival upstream from the Scott River. This conclusion is based on the different effects of covariates in this reach that were likely attributable to the differences in hatchery and wild migration behaviors in this reach. The results of this second year of research provide insight to the migration and survival of hatchery and wild juvenile coho salmon in the Klamath River, but the results are from a single unusual water year. The results may be different during other water year types. The current information supports a positive relation between discharge at Iron Gate Dam and survival of juvenile coho salmon downstream, but additional data should be used to refine this relation. Discharge at the dam was correlated with discharges of Klamath River tributaries during this above average water year. The data and models from the 2006 study provide the first estimates of survival of these fish in the Klamath River and can be used with data from years with other water year types to examine the effects of discharge on survival. This will only be possible over a period of years in which the correlations between discharge and other factors, such as water temperature and date, are diminished. An experimental approach in which discharges are varied at Iron Gate Dam is the most direct method to determine if survivals are affected by discharge, but this may not be feasible given the limited storage capacity of the project.

California

Evaluation of LiDAR-acquired bathymetric and topographic data accuracy in various hydrogeomorphic settings in the Deadwood and South Fork Boise Rivers, West-Central Idaho, 2007

High-quality elevation data in riverine environments are important for fisheries management applications and the accuracy of such data needs to be determined for its proper application. The Experimental Advanced Airborne Research LiDAR (Light Detection and Ranging)-or EAARL-system was used to obtain topographic and bathymetric data along the Deadwood and South Fork Boise Rivers in west-central Idaho. The EAARL data were post-processed into bare earth and bathymetric raster and point datasets. Concurrently with the EAARL surveys, real-time kinematic global positioning system surveys were made in three areas along each of the rivers to assess the accuracy of the EAARL elevation data in different hydrogeomorphic settings. The accuracies of the EAARL-derived raster elevation values, determined in open, flat terrain, to provide an optimal vertical comparison surface, had root mean square errors ranging from 0.134 to 0.347 m. Accuracies in the elevation values for the stream hydrogeomorphic settings had root mean square errors ranging from 0.251 to 0.782 m. The greater root mean square errors for the latter data are the result of complex hydrogeomorphic environments within the streams, such as submerged aquatic macrophytes and air bubble entrainment; and those along the banks, such as boulders, woody debris, and steep slopes. These complex environments reduce the accuracy of EAARL bathymetric and topographic measurements. Steep banks emphasize the horizontal location discrepancies between the EAARL and ground-survey data and may not be good representations of vertical accuracy. The EAARL point to ground-survey comparisons produced results with slightly higher but similar root mean square errors than those for the EAARL raster to ground-survey comparisons, emphasizing the minimized horizontal offset by using interpolated values from the raster dataset at the exact location of the ground-survey point as opposed to an actual EAARL point within a 1-meter distance. The average error for the wetted stream channel surface areas was -0.5 percent, while the average error for the wetted stream channel volume was -8.3 percent. The volume of the wetted river channel was underestimated by an average of 31 percent in half of the survey areas, and overestimated by an average of 14 percent in the remainder of the survey areas. The EAARL system is an efficient way to obtain topographic and bathymetric data in large areas of remote terrain. The elevation accuracy of the EAARL system varies throughout the area depending upon the hydrogeomorphic setting, preventing the use of a single accuracy value to describe the EAARL system. The elevation accuracy variations should be kept in mind when using the data, such as for hydraulic modeling or aquatic habitat assessments.

Idaho

Effects of sucker gigging on fish populations in Oklahoma scenic rivers

Suckers (Catostomidae) are ecologically important, and some support popular fisheries, despite not being considered ‘sport fish’ in most states. Gigging suckers is a popular and culturally significant pastime in the Ozark Highlands, but little is known about the effect of gigging harvest on population dynamics of suckers. Therefore, research is needed to determine safe levels of sucker harvest that ensure sustainability of sucker gigging and protect overall ecosystem function. The objectives of this study were to: 1) determine the spatial distribution of common sucker species during spawning season (when sucker gigging is most effective), 2) determine the population size, age structure , and total mortality rate for common sucker species, and 3) model the effects of different harvest rates on sucker populations to determine the harvest rate at which growth overfishing and recruitment overfishing begin. Suckers were sampled using electrofishing, modified fyke netting, gillnetting, hoop netting, and seining and marked with passive integrated transponder (PIT) tags to provide information about population size, demographics, and coarse-scale movement patterns. A subset of fish sampled using the above gears and additional fish collected during gigging tournaments in 2017-2019 and 2021-2022 (no tournament was held in 2020) were used for age analyses. Tournament data collected prior to the initiation of this project were obtained from the state agency. Data from gigging tournaments indicated Golden Redhorse Moxostoma erythrurum, Black Redhorse M. duquesnei, White Sucker Catostomus commersonii, and Spotted Sucker Minytrema melanops were vulnerable to gigging harvest. Selection by giggers for larger individuals was apparent for all species except Golden Redhorse in 2019. Spotted Suckers constituted most fish harvested, but the proportion of each species harvested still varied among years. A total of 943 fish were aged from samples obtained from 2017 to 2022 and results from subsequent analyses indicated a high degree of variation in growth rates within and among species. Over 4,700 suckers were tagged with PIT tags and over 400 recaptures of these tagged fish were made since autumn 2018. Preliminary analyses indicate survival was consistent across samples and species, and detection rates varied by sampling event (3-month periods). Our most likely top multistrata model suggested that a large portion of fish within the upper Spavinaw, lower Spavinaw, and reservoir sections remain in these locations year-round (means: 0.46 – 0.67). Despite this, transition probabilities are still high for movement from upper Spavinaw to lower Spavinaw (mean: 0.32) and from lower Spavinaw to upper Spavinaw (mean: 0.38). Likewise, transition probabilities were high for movement from lower Spavinaw to the reservoir (mean: 0.15) and from the reservoir to lower Spavinaw (mean: 0.32). Transition probabilities between upper Spavinaw and the reservoir were low in both directions (means < 0.01). Population sizes, growth trajectories and length-weight relationships varied among species. Preliminary harvest models suggest species-specific regulation may be scientifically appropriate; however, it may be difficult for giggers to identify species while gigging. Based on our model results, there appears to be little risk of recruitment or growth overfishing for any species at current exploitation levels.

Oklahoma

Great Lakes spatial priorities study

Spatial data about the bathymetry, habitat characteristics, underlying geology, and other features of the ocean and inland seas are essential for decision-making. Marine research and management organizations use these data to help ensure safe navigation, promote sustainable fisheries, extract energy, and protect marine habitats in the coastal and ocean waters of the U.S. Exclusive Economic Zone (EEZ) and Laurentian Great Lakes. Many of these organizations may have overlapping or shared mapping interests without knowing it. In a multi-jurisdictional planning environment, it can be challenging and cumbersome to determine where other entities have shared or overlapping mapping interests, especially across a transnational region such as the Great Lakes. State and provincial governments, federal governments, academia, tribes and First Nations, and other stakeholders from both the U.S. and Canada all have mapping interests across Great Lakes waters. Identifying and communicating target geographies for new data collection that are shared among multiple organizations can both help to avoid redundancy of new mapping efforts, and create opportunities for greater efficiency through collaboration. To address this issue, a spatial priorities study was conducted using a geospatial tool developed by the National Ocean Services National Centers for Coastal and Ocean Science (NCCOS). The tool provided an easy-to-use online interface in which programs can identify their priorities in a simple and straightforward way. This study asked representatives of Great Lakes management and science organizations to identify the areas for which they needed maps of lakebed features on a near-term, mid-term, and long-term timeframe, and why. Then, the responses were analyzed and overlaid to determine areas of shared mapping need and opportunity and to determine the types of map products needed. The analysis revealed high interest among multiple organizations in discrete geographies including the Minnesota and Wisconsin shoreline from Duluth to the eastern extent of the Bayfield Peninsula, Green Bay in Lake Michigan, and the southern coastlines of Lake Erie and Lake Ontario, the St. Marys River, and the northern Lake Superior coastal waters near Grand Portage, MN. Lower priority mapping interest were distributed widely across all lakes, but tended to be concentrated in nearshore areas (<30 m depth). The analysis also indicated that the top mapping justifications were Habitat/biota/natural area, Benthic exploration, Commercial and recreational fishing, and Scientific research. The top desired map product types were Elevation, Substrate/sub-bottom geologic characterization, and Habitat map/characterization, although participants on some lakes noted other less prevalent product types. Following from previously conducted NOAA and non-NOAA Federal spatial prioritization exercises, the results of this regional focus can help mapping organizations better understand how their priorities align with the needs of regional organizations, allow for more efficient coordination and funding, and enable partners to leverage assets and resources to fill their most pressing data and information gaps across Great Lakes waters. The U.S. Mapping Coordination Site hosts the results of this study and other spatial prioritization studies. Through this website, one can interact with the study results along with recent and planned mapping efforts. NOAA intends to update their spatial priorities on a three- to five-year basis. Future studies should strive to expand participation of federal agencies, state and local governments, federally-recognized tribes, academia, and private industry (among other stakeholders) to seek out ocean mapping partnerships in conjunction with the National Ocean Mapping, Exploration and Characterization (NOMEC) goals map once, use many times.”

Great Lakes

Variation and plasticity and their interaction with urbanization in Guadalupe Bass populations on and off the Edwards Plateau

The Colorado River Basin in Texas has experienced major alterations to its hydrologic regime due to changing land and water use patterns. These anthropogenic influences on hydrologic variability have had major implications for riparian and aquatic ecosystems and the species dependent upon them. However, impacts are often assessed at a limited temporal and spatial scale, tending to focus on relatively short and discrete periods or portions of a river basin. It is not clear how basin-wide alterations occurring over decades affect species. Guadalupe Bass Micropterus treculii are endemic to central Texas and are typically associated with shallow runs and riffles in small streams. However, Guadalupe Bass are found throughout the Colorado River Basin, including the mainstem portion of the lower river downstream of the city of Austin where they support a popular fishery. Because Guadalupe Bass exist across a wide range of stream orders within the basin, it is unclear whether populations respond similarly to anthropogenic disturbances or to conservation and restoration activities. Therefore, our objectives were to: Assess the effects of urbanization and hydrology on the population structure and dynamics of Guadalupe Bass. Evaluate the effects of environmental gradients on ecomorphological variation in Guadalupe Bass populations across multiple spatial scales. Describe the life history, habitat use, and behavior of the Guadalupe Bass population in the lower Colorado River and compare it to populations in more “typical” habitats. Results contribute to an understanding of the response of Guadalupe Bass to anthropogenic disturbances, including increased urbanization in central Texas and further assist in the conservation of the species. The ability of the population to not only persist, but flourish downstream of a heavily populated urban area presented a unique opportunity to investigate a native species response to anthropogenic disturbance. This research revealed differences in Guadalupe Bass habitat associations and movements, contrasts in age and growth, and morphological variation across a gradient of disturbance throughout the Colorado River Basin. Results of this work provide information on the potential effects of human population growth and increased water withdrawals on Guadalupe Bass populations. Additionally, this work adds to an understanding of the unique Guadalupe Bass population found in the lower Colorado River and how it differs from upstream tributary populations. Gathering additional population-level information facilitates conservation actions critical to preserving preferred habitat and promoting growth rates for Guadalupe Bass in streams of different sizes and flow conditions while highlighting interpopulation differences that may warrant consideration for stocking programs and other management strategies. Key findings of this study were: The similarity in response of growth rates to streamflow throughout the Colorado Basin suggests phenotypic plasticity in this trait rather than population-specific adaptations. Reductions in streamflows in the Colorado River Basin, whether due to increased frequency of drought or increased anthropogenic water withdrawal, will likely result in lower Guadalupe Bass growth rates with the potential to impact the structure of populations. Growth and recruitment showed a positive correlation with increased baseflows and mean monthly flows; however, continued assessment is necessary to determine a true relationship. We documented morphological divergence among Guadalupe Bass populations in response to spatial and temporal environmental variation. These ecomorphological differences among populations provide insight into the ability of Guadalupe Bass to respond to the differing in-stream habitat and flow conditions between small ‘typical’ tributary systems and the mainstem Colorado River. Morphological variation may be a population-level adaptation that potentially needs to be taken into consideration when choosing broodstock to maximize stocking success within a system. Understanding the morphological differences between Guadalupe Bass populations in response to local conditions could improve the success of restoration and supplemental stocking programs, especially in the ever-changing landscape of central Texas. We established a baseline for understanding the morphological response of Guadalupe Bass to increased population growth and the threats posed by increased water withdrawals and impervious surface. The mainstem population of Guadalupe Bass was generally more mobile, and more responsive to changes in streamflow, than tributary populations. The observed differences could influence the response of Guadalupe Bass populations to conservation and management actions, such as habitat restoration efforts. Continued monitoring of recruitment and angler exploitation may be beneficial to identify any changes that could negatively impact the population. Conservation initiatives solely focused on physical instream or riparian habitat are unlikely to be as beneficial to Guadalupe Bass as those focused on restoring or maintaining adequate streamflow

Cooperator Science Series

Survival of juvenile chinook salmon and coho salmon in the Roza Dam fish bypass and in downstream reaches of the Yakima River, Washington, 2016

Estimates of juvenile salmon survival are important data for fishery managers in the Yakima River Basin. Radiotelemetry studies during 2012–14 showed that tagged juvenile Chinook salmon ( Oncorhynchus tshawytscha ) that passed through the fish bypass at Roza Dam had lower survival than fish that passed through other routes at the dam. That study also identified flow-survival relationships in the reaches between the Roza Dam tailrace and Sunnyside Dam. During 2012–14, survival also was estimated through reaches downstream of Sunnyside Dam, but generally, sample sizes were low and the estimates were imprecise. In 2016, we conducted an evaluation using acoustic cameras and acoustic telemetry to build on information collected during the previous study. The goal of the 2016 research was to identify areas where mortality occurs in the fish bypass at Roza Dam, and to estimate reach-specific survival in reaches downstream of the dam. The 2016 study included juvenile Chinook salmon and coho salmon ( O. kisutch ). Three acoustic cameras were used to observe fish behavior (1) near the entrances to the fish bypass, (2) at a midway point in the fish bypass (convergence vault), and (3) at the bypass outfall. In total, 504 hours of acoustic camera footage was collected at these locations. We determined that smolt-sized fish (95–170 millimeters [mm]) were present in the highest proportions at each location, but predator-sized fish (greater than 250 mm) also were present at each site. Fish presence generally peaked during nighttime hours and crepuscular periods, and was low during daytime hours. In the convergence vault, smolt-sized fish exhibited holding behavior patterns, which may explain why some fish delayed while passing through the bypass. Some of the acoustic-tagged fish were delayed in the fish bypass following release, but there was no evidence to suggest that they experienced higher mortality than fish that were released at the bypass outfall or downstream of the dam. Most of the tagged fish that were released in the fish bypass moved downstream and re-entered the river within 12 hours, but 9.8 percent of the Chinook salmon and 15.7 percent of the coho salmon remained in the bypass for 2.5–17.4 days. We developed a set of models for Chinook salmon and coho salmon and used model selection to determine if release site was an important predictor of survival of tagged fish. The models that provided the best fit to the Chinook salmon and coho salmon datasets did not include release site as a covariate. Furthermore, survival estimates for groups of fish from the various release sites were nearly identical for both species. Based on these observations, it appears that passage through the fish bypass did not result in increased mortality relative to groups of fish released downstream of the bypass. Juvenile Chinook salmon migrated downstream faster than juvenile coho salmon and survival for each species varied with release timing. Median travel time from release at Roza Dam to arrival at a detection gate located at river kilometer (rkm) 527.8 on the Columbia River was 15.4 days for Chinook salmon and 37.4 days for coho salmon. Cumulative survival from Roza Dam to the Columbia River detection gate ranged from 0.299 to 0.678 for Chinook salmon, and from 0.321 to 0.627 for coho salmon. Survival was highest for both species when tagged fish were released in mid-April and lowest when tagged fish were released in early-May. Reach-specific survival estimates were standardized to create estimates that described survival per 100 rkm, which showed that survival was very low (less than 0.500) for some release groups, particularly in the Roza, Sunnyside, and Chandler diversion reaches. A more extensive analysis of reach-specific survival is planned for this dataset, which should provide insights into covariates that affected survival during 2016.

Washington

The geography and geology of Alaska; a summary of existing knowledge, with a section on climate, and a topographic map and description thereof

Alaska, the largest outlying possession of the United States, is that great land mass forming the northwestern extremity of the North American continent, whose western point is within 60 miles of the Asiatic coast (PI. II). About one-quarter of this area lies within the Arctic Circle, and from the standpoint of geographic position must be regarded as an arctic province; but the southern seaboard, exposed to the warm winds and waters of the Pacific, gives to the entire southern portion of the territory" a comparatively warm climate. It is not generally realized that the range of climate in Alaska is greater than that between Florida and Maine. At the southernmost point of the Pacific coast the mean annual temperature is not far from that of the city of Washington, the winters being warmer and characterized by less snowfall; the Yukon Valley on the other hand has a winter climate similar to that of northern Montana and Dakota; while in the extreme northern part of the territory the meteorologic conditions are invariably arctic. Though as yet only sparsely settled, Alaska's vast area and great resources make it one of the most important possessions of the United States and promise its rapid development. During the years 1890 to 1900 the population increased from 32,052* to 63,592. The mineral output, which in 1890 was valued at less than $800,000, exceeded $9,000,000 in 1904, and the fisheries show a corresponding growth. This rapid development has attracted public attention and led to urgent demand for explorations, surveys, and other investigations. So actively has this work been pushed, both by public and private enterprise, that exact knowledge of the geography, geology, and mineral resources of the interior has made greater strides within the last eight years than during the preceding thirty-one years since the acquisition of Alaska. The facts regarding the geography and geology, scattered as they are through the many books and reports of this period, are not always readily accessible, and the time seems ripe to present them in a summarized form. The topography of Alaska is varied and complex (see PI. I), and it is not easy to present briefly even the salient features. The limited number of pages here devoted to the subject precludes the possibility of detailed treatment, even if the facts were available. Much of the description has been taken from the results attained by other investigators, the writer being personally familiar with only a part of this large province. A list of the publications consulted is appended. The larger geographic features of Alaska are now fairly well known, though the detailed surveys which are demanded by the development of many localities have hardly been begun. Preliminary surveys have been completed of all but three 8 of the larger rivers. The most important mountain ranges have been at least outlined (fig. 3). Only three large areas remain almost entirely unmapped: One in southwestern Alaska, between Cook Inlet and the lower Kuskokwim, and the others in northern Alaska, embracing the Arctic watershed east and west of the Colville River. Nearly all the surveys of the interior, however, have been of a preliminary and exploratory character, and to meet the requirements of exact geography must be followed by more detailed mensuration. Though the coast line has been fairly well known for more than half a century, knowledge of the interior has been gained chiefly within the last two decades. This has not yet found its way into text-books and has too often been entirely ignored by cartographers. If facts are presented which may seem elementary, it is because even well-informed people have been known to harbor misconceptions in regard to the orographic features, climate, and general character of Alaska. Those who read of the perils and privations of winter travel and explorations are apt to picture a region of ice and snow; others, again, who have personal knowledge of the tourist route of southeastern Alaska, regard the whole district as one of rugged mountains and glaciers. In point of fact, glaciers are now nearly limited to the ranges bordering the Pacific and to the two slopes of the Alaska range; and even during the greatest development of glaciers but a small portion of Alaska was under ice (see map, PI. XXII). As a treatise on geography would hardly be complete without some discussion of the climate, meteorologic data have been compiled by Mr. Cleveland Abbe, jr., but the discussion of this does not pretend to be more than a cursory treatment of the subject. The scope of the paper seems to require also a brief summary of the development of geographic knowledge of Alaska. This subject, with its many ramifications, is of fascinating interest and offers a magnificent field for the trained historian. If the accompanying sketch of discovery and exploration awakens any measure of popular interest the writer will feel amply rewarded for having attacked a theme which hardly falls within the scope of his investigations. When this compilation was begun it was intended to be chiefly a description of the topography of Alaska, as illustrated by the accompanying map (PI. XXXIV, in pocket), which was compiled under the direction of the late R. U. Goode. In the course of the work there accumulated much geologic as well as geographic material which seemed worthy of inclusion in the report. As no comprehensive statement of the geology of Alaska has been made since the modern epoch of investigation was begun, an attempt will be made to give a summary of all results achieved. Since the writer has obtained much of his knowledge of the facts from the work of others, he disclaims any pretense of making an entirely original contribution to geologic science. He feels, however, that a personal familiarity with a considerable part of the province, gained during seven consecutive seasons of field work, will justify Mm in presenting conclusions which may in some cases be at variance with those in the reports on which he must draw for his facts. Throughout this report attempt will be made to credit borrowed material to the source from which it is drawn. Where such matter has been obtained entirely from published reports there is no difficulty in so doing; but as regards investigators of the Geological Survey, with whom the writer has collaborated both in field and in office, the case is somewhat different, for it is not always possible to know whether this or that theory originated with the writer or with one of his colleagues. It will, then, perhaps suffice to state that this report could not have been prepared without the explorations and researches of the geologists, F. C. Schrader, Walter C. Mendenhall, Arthur J. Collier, J. E. Spurr, and Arthur C. Spencer; and the surveys of the topographers, T. G. Gerdine, D. C. Witherspoon, D. L. Reaburn, W. J. Peters, and E. C. Barnard. Each of these men, in the course of from two to six years of field work, has made important contributions to the knowledge of the geography and geology of Alaska, and not all of these results have yet been put in print. In the last season (1903) L. M. Prindle, C. W. Wright, Arthur Hollick, G. C. Martin, F. L. Hess, and Fred H. Moffit have carried on geologic work in Alaska, and the writer has made use of their work now in course of publication. He has also been fortunate in having access to the manuscript reports of Walter C. Mendenhall and F. C. Schrader on the Copper River basin, to which references will be made. The matter here presented should be credited in a measure to all of these investigators, but for many of the theories advanced the writer alone is responsible. As this manuscript goes to press there has been opportunity to incorporate some of the results of the field work of 1904. As far as possible these have been embodied in the text, but in some instances it has been found advisable to add them only as footnotes. During the past summer F. E. and C. W. Wright extended the geologic reconnaissance in southeastern Alaska. In southwestern Alaska G. C. Martin and T. W. Stanton have determined the general Mesozoic section, while F. H. Moffit has made a reconnaissance of the northern part of the Kenai Peninsula. A. J. Collier has mapped the geology of the Cape Lisburne region, and L. M. Prindle and F. L. Hess have made contributions to the knowledge of the metamorphic terranes of the Yukon-Tanana district. It is the writer's purpose to describe in nontechnical language the larger geographic features and discuss their relation as far as the data available will permit. In the treatment of the geology, however, less effort will be made to make the matter acceptable to the lay reader. It is hoped, however, that a brief summary of the salient features of the geologic history' may be not without interest to the general public. If this paper serves in some measure to dispel the popular fallacies regarding Alaska and to disseminate more accurate knowledge of its geographic and geologic features, the purpose of its publication will be accomplished.

Alaska

The potential effects of sodium bicarbonate, a major constituent from coalbed natural gas production, on aquatic life

The production water from coalbed natural gas (CBNG) extraction contains many constituents. The U.S. Environmental Protection Agency has established aquatic life criteria for some of these constituents, and it is therefore possible to evaluate their risk to aquatic life. However, of the major ions associated with produced waters, chloride is the only one with an established aquatic life criterion (U.S. Environmental Protection Agency, 1988). The focus of this research was NaHCO 3 , a compound that is a major constituent of coalbed natural gas produced waters in the Tongue and Powder River Basins. This project included laboratory experiments, field in situ experiments, a field mixing zone study, and a fishery presence/absence assessment. Though this investigation focuses on the Tongue and Powder River Basins, the information is applicable to other watersheds where sodium bicarbonate is a principle component of product water either from CBNG or from traditional or unconventional oil and gas development. These data can also be used to separate effects of saline discharges from those potentially posed by other constituents. Finally, this research effort and the additional collaboration with USGS Water Resources and Mapping, Bureau of Land Management, US Environmental Protection Agency, State of Montana, State of Wyoming, Montana State University, University of Wyoming, and others as part of a Powder River Aquatic Task Group, can be used as a model for successful approaches to studying landscapes with energy development. The laboratory acute toxicity experiments were completed with a suite of organisms, including 7 species of fish, 5 species of invertebrates, and 1 amphibian species. Experiments performed on these multiple species resulted in LC50s that ranged from 1,120 to greater than (>) 8,000 milligrams sodium bicarbonate per liter (mg NaHCO 3 /L) (also defined as 769 to >8,000 milligrams bicarbonate per liter (mg HCO 3 -/L) or total alkalinity expressed as 608 to >4,181 milligrams calcium carbonate per liter (mg CaCO 3 /L)) that varied across species and lifestage within a species. The age at which fish were exposed to NaHCO 3 significantly affected the severity of toxic responses for some organisms. The chronic toxicity of NaHCO 3 was defined in experiments that lasted from 7&mdash;60 days post-hatch. For these experiments, sublethal effects such as growth and reproduction, in addition to significant reductions in survival were included in the final determination of effects. Chronic toxicity was observed at concentrations that ranged from 450 to 800mg NaHCO 3 /L (also defined as 430 to 657 mg HCO 3 -/L or total alkalinity expressed as 354 to 539 mg CaCO 3 /L) and the specific concentration depended on the sensitivity of the four species of invertebrates and fish exposed. Sublethal investigations during chronic studies revealed percent decrease in the activity of sodium-potassium adenosine triphosphatase (Na/K ATPase, an enzyme involved in ionoregulation) and the age of the fish at the onset of the decrease may affect the ability of fathead minnow to survive exposures to NaHCO 3 . A database of toxicity evaluations of NaHCO 3 on aquatic life has been constructed. Using these data, sample acute and chronic criteria of 459 and 381 mg NaHCO 3 /L, respectively, can be calculated for the protection of aquatic life. The final derivation and implementation of such criteria is, of course, left to the discretion of the concerned management agencies. A combination of in situ experiments, static-renewal experiments performed simultaneously with in situ experiments, and static renewal experiments performed with site water in the laboratory, demonstrated that untreated coalbed natural gas (CBNG) product water from the Tongue and Powder River Basins reduces survival of fathead minnow and pallid sturgeon. More precisely, the survival of early-lifestage fathead minnow, especially those less than 6-days post hatch (dph), likely is reduced significantly in the field when concentrations of NaHCO 3 rise above 1,500 mg/L. However, age was not a factor for pallid sturgeon and they were sensitive to product water regardless of age. Treatment with the Higgins Loop&trade; technology and dilution of untreated water increased survival in the laboratory. Both of these situations reduced ammonia in addition to the concentrations of NaHCO 3 . These experiments addressed the acute toxicity of effluent waters being added to the main stem rivers, but did not address issues related to the volumes of water that may be added to the watershed. Mixing zones of the three outfalls studied ranged from approximately 800&mdash;1,200 m below the confluence and the areas within these mixing zones with acutely lethal concentrations of NaHCO 3 (as defined by the presence of concentrated dye) are limited. The areas with concentrations of NaHCO 3 more than the concentrations likely to cause significant mortality, and more than the calculated sample water-quality criteria in the Tongue and Powder River Basins appear to be limited to tributaries and parts of mixing zones with considerable additions of untreated effluent.

Montana;Wyoming