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At least 235 records · Page 13Linked to original sources
USGS2013

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

Gut microbiota of invasive Asian silver carp (SVCP) and indigenous planktivorous gizzard shad (GZSD) in Mississippi river basin were compared using 16S rRNA gene pyrosequencing. Analysis of more than 440 000 quality-filtered sequences obtained from the foregut and hindgut of GZSD and SVCP revealed high microbial diversity in these samples. GZSD hindgut (GZSD_H) samples (n=23) with >7000 operational taxonomy units (OTUs) exhibited the highest alpha-diversity indices followed by SVCP foregut (n=15), GZSD foregut (n=9) and SVCP hindgut (SVCP_H) (n=24). UniFrac distance-based non-metric multidimensional scaling (NMDS) analysis showed that the microbiota of GZSD_H and SVCP_H were clearly separated into two clusters: samples in the GZSD cluster were observed to vary by sampling location and samples in the SVCP cluster by sampling date. NMDS further revealed distinct microbial community between foregut to hindgut for individual GZSD and SVCP. Cyanobacteria, Proteobacteria, Actinobacteria and Bacteroidetes were detected as the predominant phyla regardless of fish or gut type. The high abundance of Cyanobacteria observed was possibly supported by their role as the fish’s major food source. Furthermore, unique and shared OTUs and OTUs in each gut type were identified, three OTUs from the order Bacteroidales, the genus Bacillariophyta and the genus Clostridium were found significantly more abundant in GZSD_H (14.9–22.8%) than in SVCP_H (0.13–4.1%) samples. These differences were presumably caused by the differences in the type of food sources including bacteria ingested, the gut morphology and digestion, and the physiological behavior between GZSD and SVCP.

International Society for Microbial Ecology↗
USGS2023

Metabolically diverse microorganisms mediate methylmercury formation under nitrate-reducing conditions in a dynamic hydroelectric reservoir

Brownlee Reservoir is a mercury (Hg)-impaired hydroelectric reservoir that exhibits dynamic hydrological and geochemical conditions and is located within the Hells Canyon Complex in Idaho, USA. Methylmercury (MeHg) contamination in fish is a concern in the reservoir. While MeHg production has historically been attributed to sulfate-reducing bacteria and methanogenic archaea, microorganisms carrying the hgcA gene are taxonomically and metabolically diverse and the major biogeochemical cycles driving mercury (Hg) methylation are not well understood. In this study, Hg speciation and redox-active compounds were measured throughout Brownlee Reservoir across the stratified period in four consecutive years (2016–2019) to identify the location where and redox conditions under which MeHg is produced. Metagenomic sequencing was performed on a subset of samples to characterize the microbial community with hgcA and identify possible links between biogeochemical cycles and MeHg production. Biogeochemical profiles suggested in situ water column Hg methylation was the major source of MeHg. These profiles, combined with genome-resolved metagenomics focused on hgcA -carrying microbes, indicated that MeHg production occurs in this system under nitrate- or manganese-reducing conditions, which were previously thought to preclude Hg-methylation. Using this multidisciplinary approach, we identified the cascading effects of interannual variability in hydrology on the redox status, microbial metabolic strategies, abundance and metabolic diversity of Hg methylators, and ultimately MeHg concentrations throughout the reservoir. This work expands the known conditions conducive to producing MeHg and suggests that the Hg-methylation mitigation efforts by nitrate or manganese amendment may be unsuccessful in some locations.

Idaho↗
USGS2025

Sulfide stress tolerance as a controller of methane production in temperate wetlands

Wetlands are a major source of methane emissions and contribute to the observed increase in atmospheric methane over the last 20 years. Methane production in wetlands is the final step of carbon decomposition performed by anaerobic archaea. Although hydrogen/carbon dioxide and acetate are the substrates most often attributed to methanogenesis, other substrates—such as methylated compounds—may additionally play important roles in driving methane production in wetland systems. Here we conducted mesocosm experiments combined with genome-resolved metatranscriptomics to investigate the impact of diverse methanogenic substrate amendment on methanogenesis in two high methane-emitting wetlands with distinct geochemistry, termed P7 and P8. Methanol amendment resulted in high methane production at both sites, whereas acetate and formate amendment only stimulated methanogenesis in P7 mesocosms, where aqueous sulfide concentrations were lower. In P7 sediments, formate amendment fueled acetogenic microbes that produced acetate, which was subsequently utilized by acetoclastic methanogens. In contrast to expression profiles in P7 mesocosms, active methylotrophic methanogen genomes from P8 showed increased expression of genes related to membrane remodeling and DNA damage repair, indicative of stress tolerance mechanisms to counter sulfide toxicity. Methylotrophic methanogenesis generates higher free energy yields than acetoclastic methanogenesis, which likely enables allocation of more energy toward stress responses. These findings contribute to the growing body of literature highlighting methylotrophic methanogenesis as an important methane production pathway in wetlands. By using less competitive substrates like methanol that provide greater energy yields, methylotrophic methanogens may invest in physiological strategies that provide competitive advantages across a range of environmental stresses.

North Dakota↗
USGS2011

Ecosystem approach to inland fisheries: Research needs and implementation strategies

Inland fisheries are a vital component in the livelihoods and food security of people throughout the world, as well as contributing huge recreational and economic benefits. These valuable assets are jeopardized by lack of research-based understanding of the impacts of fisheries on inland ecosystems, and similarly the impact of human activities associated with inland waters on fisheries and aquatic biodiversity. To explore this topic, an international workshop was organized in order to examine strategies to incorporate fisheries into ecosystem approaches for management of inland waters. To achieve this goal, a new research agenda is needed that focuses on: quantifying the ecosystem services provided by fresh waters; quantifying the economic, social and nutritional benefits of inland fisheries; improving assessments designed to evaluate fisheries exploitation potential; and examining feedbacks between fisheries, ecosystem productivity and aquatic biodiversity. Accomplishing these objectives will require merging natural and social science approaches to address coupled social-ecological system dynamics. ?? 2010 The Royal Society.

Conference Paper↗
USGS2015

Winter habitat associations of blackbirds and starlings wintering in the south-central United States

Birds can cause extensive crop damage in the United States. In some regions, depredating species comprise a substantial portion of the total avian population, emphasizing their importance both economically and ecologically. We used the National Audubon Society Christmas Bird Count data from the south-central United States and mixed-effects models to identify habitat factors associated with population trend and abundance for 5 species: red-winged blackbird ( Agelaius phoeniceus ), common grackle ( Quiscalus quiscula ), rusty blackbird ( Euphagus carolinus ), Brewer’s blackbird ( Euphagus cyanocephalus ), and European starling ( Sturnus vulgaris ). Overall, we found positive associations between bird abundance and agricultural land-cover for all species. Relationships between abundance and other land-cover types were species-specific, often with contrasting relationships among species. Likewise, we found no consistent patterns among abundance and climate. Of the 5 species, only red-winged blackbirds had a significant population trend in our study area, increasing annually by 2.4%. There was marginal evidence to suggest population increases for rusty blackbirds, whereas all other species showed no trend in population size within our study area. Our study provides managers who are interested in limiting crop damage in the south-central United States with novel information on habitat associations in the region that could be used to improve management and control actions.

Alabama, Arkansas, Kansas, Louisiana, Mississippi,↗
USGS2007

Water Quality in the Tanana River Basin, Alaska, Water Years 2004-06

OVERVIEW This report contains water-quality data collected from 84 sites in Tanana River basin during water years 2004 through 2006 (October 2003 through September 2006) as part of a cooperative study between the U.S. Geological Survey (USGS) and Alaska Department of Environmental Conservation (ADEC) Alaska Monitoring and Assessment Program (AKMAP), supported in part through the U.S. Environmental Protection Agency (USEPA) Office of Water, Cooperative Assistance Agreement X7-97078801. A broad range of chemical analyses are presented for 93 sets of samples collected at 59 tributaries to the Tanana River and at 25 locations along the mainstem. These data are to provide a means to assess baseline characteristics and establish indicators that are ecologically important, affordable, and relevant to society.

Open-File Report↗
USGS2006

Monitoring low density avian populations: An example using Mountain Plovers

Declines in avian populations highlight a need for rigorous, broad-scale monitoring programs to document trends in avian populations that occur in low densities across expansive landscapes. Accounting for the spatial variation and variation in detection probability inherent to monitoring programs is thought to be effort-intensive and time-consuming. We determined the feasibility of the analytical method developed by Royle and Nichols (2003), which uses presence-absence (detection-non-detection) field data, to estimate abundance of Mountain Plovers (Charadrius montanus) per sampling unit in agricultural fields, grassland, and prairie dog habitat in eastern Colorado. Field methods were easy to implement and results suggest that the analytical method provides valuable insight into population patterning among habitats. Mountain Plover abundance was highest in prairie dog habitat, slightly lower in agricultural fields, and substantially lower in grassland. These results provided valuable insight to focus future research into Mountain Plover ecology and conservation. ?? The Cooper Ornithological Society 2006.

Condor↗
USGS2020

Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring

The ongoing recovery of terrestrial large carnivores in North America and Europe is accompanied by intense controversy. On the one hand, reestablishment of large carnivores entails a recovery of their most important ecological role, predation. On the other hand, societies are struggling to relearn how to live with apex predators that kill livestock, compete for game species, and occasionally injure or kill people. Those responsible for managing these species and mitigating conflict often lack fundamental information due to a long-standing challenge in ecology: How do we draw robust population-level inferences for elusive animals spread over immense areas? Here we showcase the application of an effective tool for spatially explicit tracking and forecasting of wildlife population dynamics at scales that are relevant to management and conservation. We analyzed the world’s largest dataset on carnivores comprising more than 35,000 noninvasively obtained DNA samples from over 6,000 individual brown bears ( Ursus arctos ), gray wolves ( Canis lupus ), and wolverines ( Gulo gulo ). Our analyses took into account that not all individuals are detected and, even if detected, their fates are not always known. We show unequivocal quantitative evidence of large carnivore recovery in northern Europe, juxtaposed with the finding that humans are the single-most important factor driving the dynamics of these apex predators. We present maps and forecasts of the spatiotemporal dynamics of large carnivore populations, transcending national boundaries and management regimes.

Proceedings of the National Academy of Sciences of↗
USGS2007

Natural landscape and stream segment attributes influencing the distribution and relative abundance of riverine smallmouth bass in Missouri

Protecting and restoring fish populations on a regional basis are most effective if the multiscale factors responsible for the relative quality of a fishery are known. We spatially linked Missouri's statewide historical fish collections to environmental features in a geographic information system, which was used as a basis for modeling the importance of landscape and stream segment features in supporting a population of smallmouth bass Micropterus dolomieu. Decision tree analyses were used to develop probability-based models to predict statewide occurrence and within-range relative abundances. We were able to identify the range of smallmouth bass throughout Missouri and the probability of occurrence within that range by using a few broad landscape variables: the percentage of coarse-textured soils in the watershed, watershed relief, and the percentage of soils with low permeability in the watershed. The within-range relative abundance model included both landscape and stream segment variables. As with the statewide probability of occurrence model, soil permeability was particularly significant. The predicted relative abundance of smallmouth bass in stream segments containing low percentages of permeable soils was further influenced by channel gradient, stream size, spring-flow volume, and local slope. Assessment of model accuracy with an independent data set showed good concordance. A conceptual framework involving naturally occurring factors that affect smallmouth bass potential is presented as a comparative model for assessing transferability to other geographic areas and for studying potential land use and biotic effects. We also identify the benefits, caveats, and data requirements necessary to improve predictions and promote ecological understanding. ?? Copyright by the American Fisheries Society 2007.

North American Journal of Fisheries Management↗
USGS2025

The socio-ecological niche

1. Ecologists recognise that we live on an increasingly human-dominated planet, yet most of the field's foundational concepts remain essentially biophysical, with little reference to human society. 2. There are few better examples of this divide between ecological and social theory than the niche concept. During its century-long history, the niche concept has been defined in many ways, including to describe the ecological roles of humans. To date, however, it has not incorporated human influences into its various descriptions of other species' ecological roles. 3. In this essay, we present the socio-ecological niche (SEN) concept, which builds on the literature in niche theory by contributing insights from the social sciences and humanities to better understand the roles of non-human species in modern socio-ecological systems. 4. We argue that the SEN enriches the niche concept and offers a point of connection between ecology and justice.

People and Nature↗
USGS2022

Counterfactuals to assess effects to species and systems from renewable energy development

Renewable energy production, mostly via wind, solar, and biofuels, is central to goals worldwide to reduce carbon emissions and mitigate anthropogenic climate change (IPCC, 2014; Pörtner et al., 2021). Nevertheless, adverse impacts to natural systems, especially fatalities of wildlife and alteration of habitat, are key challenges for renewable energy production (Allison et al., 2019; Katzner et al., 2019). Because of the magnitude of these challenges, extensive effort has been invested in surveys and science to understand the environmental effects of renewable energy on species and systems. Nevertheless, these impacts have not been formally compared relative to counterfactual conditions (Bull et al., 2021; Coetzee and Gaston, 2021), i.e., those occurring in the absence of renewable energy. As such, cumulative ecological impact assessments required by many regulating agencies typically only consider the adverse impacts of renewables, without evaluating whether mitigative effects of current and planned build-out (e.g., Larson et al., 2020) will offset their adverse impacts to species and natural systems (Allison et al., 2014). Accordingly, these critical decision processes have an insufficient perspective to foster fully informed decisions, and, for some species or systems, renewable energy could lead to more profound impacts than those it is intended to prevent. Furthermore, because of this approach and, despite the well-studied benefits to society of renewable energy development (IPCC, 2014), the ecological value of renewable energy is often premised on the plausible but untested assumption that its negative effects to natural populations and systems are less consequential than the negative effects in alternative scenarios with less renewable energy and greater climate change. A more comprehensive framing of the counterfactual in cumulative ecological impact assessments would evaluate, for each species or system, the incremental effects of renewables over their full life cycle against the incremental effects they provide by mitigating climate change. This framing is important because a given species or system may see net positive or net negative effects from either renewables or climate change. Furthermore, cumulative impact assessments could identify optimized tradeoffs that balance, for each species or system, the effects of both climate change and renewable energy.

Frontiers in Conservation Science↗
USGS2016

Book review: Black bass diversity: Multidisciplinary science for conservation

These proceedings are from the third symposium dedicated to management and conservation of black basses in the genus Micropterus . The first symposium was held in 1975 (R. H. Stroud and H. Clepper. Black Bass Biology and Management . Washington (DC): Sport Fishing Institute) followed 25 years later by Black Bass 2000 (D. P. Philipp and M. S. Ridgway. 2002. Black Bass: Ecology, Conservation, and Management . Bethesda (MD): American Fisheries Society). Although the previous books discussed conservation of genetic variation and distinct strains of basses, the bulk of the papers in those tomes emphasized management of largemouth and smallmouth bass. In contrast, this third symposium is focused on the rarer bass species and challenges for their successful management. Review info: Black bass diversity: Multidisciplinary science for conservation . Edited by Michael D. Tringali, James M. Long, Timothy W. Birdsong, and Michael S. Allen, 2015. ISBN: 978-1-934874-40-0, 685 pp.

The Quarterly Review of Biology↗
USGS2009

Using time-dependent models to investigate body condition and growth rate of the giant gartersnake

Identifying links between phenotypic attributes and fitness is a primary goal of reproductive ecology. Differences in within-year patterns of body condition between sexes of gartersnakes in relation to reproduction and growth are not fully understood. We conducted an 11-year field study of body condition and growth rate of the giant gartersnake Thamnophis gigas across 13 study areas in the Central Valley of California, USA. We developed a priori mixed effects models of body condition index (BCI), which included covariates of time, sex and snout-vent length and reported the best-approximating models using an information theoretic approach. Also, we developed models of growth rate index (GRI) using covariates of sex and periods based on reproductive behavior. The largest difference in BCI between sexes, as predicted by a non-linear (cubic) time model, occurred during the mating period when female body condition (0.014??0.001 se) was substantially greater than males (-0.027??0.002 se). Males likely allocated energy to search for mates, while females likely stored energy for embryonic development. We also provided evidence that males use more body energy reserves than females during hibernation, perhaps because of different body temperatures between sexes. We found GRI of male snakes was substantially lower during the mating period than during a non-mating period, which indicated that a trade-off existed between searching for mates and growth. These findings contribute to our understanding of snake ecology in a Mediterranean climate. ?? 2009 The Zoological Society of London.

Journal of Zoology↗
USGS2013

Capacity, pressure, demand, and flow: A conceptual framework for analyzing ecosystem service provision and delivery

Ecosystem services provide an instinctive way to understand the trade-offs associated with natural resource management. However, despite their apparent usefulness, several hurdles have prevented ecosystem services from becoming deeply embedded in environmental decision-making. Ecosystem service studies vary widely in focal services, geographic extent, and in methods for defining and measuring services. Dissent among scientists on basic terminology and approaches to evaluating ecosystem services create difficulties for those trying to incorporate ecosystem services into decision-making. To facilitate clearer comparison among recent studies, we provide a synthesis of common terminology and explain a rationale and framework for distinguishing among the components of ecosystem service delivery, including: an ecosystem's capacity to produce services; ecological pressures that interfere with an ecosystem's ability to provide the service; societal demand for the service; and flow of the service to people. We discuss how interpretation and measurement of these four components can differ among provisioning, regulating, and cultural services. Our flexible framework treats service capacity, ecological pressure, demand, and flow as separate but interactive entities to improve our ability to evaluate the sustainability of service provision and to help guide management decisions. We consider ecosystem service provision to be sustainable when demand is met without decreasing capacity for future provision of that service or causing undesirable declines in other services. When ecosystem service demand exceeds ecosystem capacity to provide services, society can choose to enhance natural capacity, decrease demand and/or ecological pressure, or invest in a technological substitute. Because regulating services are frequently overlooked in environmental assessments, we provide a more detailed examination of regulating services and propose a novel method for quantifying the flow of regulating services based on estimates of ecological work. We anticipate that our synthesis and framework will reduce inconsistency and facilitate coherence across analyses of ecosystem services, thereby increasing their utility in environmental decision-making.

Ecological Complexity↗
USGS2014

Identifying legal, ecological and governance obstacles and opportunities for adapting to climate change

Current governance of regional scale water management systems in the United States has not placed them on a path toward sustainability, as conflict and gridlock characterize the social arena and ecosystem services continue to erode. Changing climate may continue this trajectory, but it also provides a catalyst for renewal of ecosystems and a window of opportunity for change in institutions. Resilience provides a bridging concept that predicts that change in ecological and social systems is often dramatic, abrupt, and surprising. Adapting to the uncertainty of climate driven change must be done in a manner perceived as legitimate by the participants in a democratic society. Adaptation must begin with the current hierarchical and fragmented social-ecological system as a baseline from which new approaches must be applied. Achieving a level of integration between ecological concepts and governance requires a dialogue across multiple disciplines, including ecologists with expertise in ecological resilience, hydrologists and climate experts, with social scientists and legal scholars. Criteria and models that link ecological dynamics with policies in complex, multi-jurisdictional water basins with adaptive management and governance frameworks may move these social-ecological systems toward greater sustainability.

Sustainability↗
USGS2014

Decomposition

A cornerstone of ecosystem ecology, decomposition was recognized as a fundamental process driving the exchange of energy in ecosystems by early ecologists such as Lindeman 1942 and Odum 1960). In the history of ecology, studies of decomposition were incorporated into the International Biological Program in the 1960s to compare the nature of organic matter breakdown in various ecosystem types. Such studies still have an important role in ecological studies of today. More recent refinements have brought debates on the relative role microbes, invertebrates and environment in the breakdown and release of carbon into the atmosphere, as well as how nutrient cycling, production and other ecosystem processes regulated by decomposition may shift with climate change. Therefore, this bibliography examines the primary literature related to organic matter breakdown, but it also explores topics in which decomposition plays a key supporting role including vegetation composition, latitudinal gradients, altered ecosystems, anthropogenic impacts, carbon storage, and climate change models. Knowledge of these topics is relevant to both the study of ecosystem ecology as well projections of future conditions for human societies.

Article↗
USGS2023

The NEON Ecological Forecasting Challenge

The 21st century continues to be characterized by major changes to the environment and the ecosystem services upon which society depends. Anticipating and responding to these changes requires that scientists explicitly forecast future conditions in real time (Dietze et al . 2018 ). Ecological forecasting, like weather and epidemiological forecasting, involves integrating data and models to generate quantitative predictions of the future state of ecological systems before observations are collected. The iterative cycle of creating forecasts, evaluating them with new observations, updating the models, and then making new forecasts has the potential to accelerate learning across many ecological subdisciplines. This cycle builds on openly available data, often published soon after collection, as is increasingly common in ecological observatory networks, such as the National Ecological Observatory Network (NEON). To accelerate improvements in ecological forecasting, we designed and launched the NEON Ecological Forecasting Challenge (hereafter, “Challenge”) (Figure 1 ), an open platform for the ecological and data science communities to forecast NEON data before they are collected.

Frontiers in Ecology and the Environment↗