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At least 235 records · Page 13Linked to original sources
USGS2017

Complex networks of functional connectivity in a wetland reconnected to its floodplain

Disturbances such as fire or flood, in addition to changing the local magnitude of ecological, hydrological, or biogeochemical processes, can also change their functional connectivity—how those processes interact in space. Complex networks offer promise for quantifying functional connectivity in watersheds. The approach resolves connections between nodes in space based on statistical similarities in perturbation signals (derived from solute time series) and is sensitive to a wider range of timescales than traditional mass-balance modeling. We use this approach to test hypotheses about how fire and flood impact ecological and biogeochemical dynamics in a wetland (Everglades, FL, USA) that was reconnected to its floodplain. Reintroduction of flow pulses after decades of separation by levees fundamentally reconfigured functional connectivity networks. The most pronounced expansion was that of the calcium network, which reflects periphyton dynamics and may represent an indirect influence of elevated nutrients, despite the comparatively smaller observed expansion of phosphorus networks. With respect to several solutes, periphyton acted as a “biotic filter,” shifting perturbations in water-quality signals to different timescales through slow but persistent transformations of the biotic community. The complex-networks approach also revealed portions of the landscape that operate in fundamentally different regimes with respect to dissolved oxygen, separated by a threshold in flow velocity of 1.2 cm/s, and suggested that complete removal of canals may be needed to restore connectivity with respect to biogeochemical processes. Fire reconfigured functional connectivity networks in a manner that reflected localized burn severity, but had a larger effect on the magnitude of solute concentrations.

Florida↗
USGS2019

Complex immune responses and molecular reactions to pathogens and disease in a desert reptile (Gopherus agassizii)

Immune function plays an important role in an animal's defense against infectious disease. In reptiles, immune responses may be complex and counterintuitive, and diagnostic tools used to identify infection, such as induced antibody responses are limited. Recent studies using gene transcription profiling in tortoises have proven useful in identifying immune responses to various intrinsic and extrinsic stressors. As part of a larger experiment with Mojave desert tortoises ( Gopherus agassizii ), we facilitated the transmission of the pathogenic bacteria, Mycoplasma agassizii (Myag), to naïve adults and measured innate and induced immune reactions over time. Specifically, we evaluated clinical condition, presence of Myag in the nasal/oral cavity, induced antibody responses specific to Myag, and measured molecular reactions (gene transcript profiles) in 15 captive tortoises classified as naïve, exposed, or infected and 14 wild tortoises for comparison. Myag was confirmed inside the nasal/oral cavity in exposed tortoises within 30–60 days of introduction to infected animals, yet we did not detect Myag specific induced antibody responses in these individuals until 420–595 days post exposure. Surprisingly, we found no overall differences in the gene transcript profiles between our experimental treatment groups throughout this study. This work highlights the complexities in assessing immune function and diagnosing pathogen related infections in tortoises and other reptiles.

Ecology and Evolution↗
USGS2021

Estimating the survival of unobservable life stages for a declining frog with a complex life-history

Demographic models enhance understanding of drivers of population growth and inform conservation efforts to prevent population declines and extinction. For species with complex life histories, however, parameterizing demographic models is challenging because some life stages can be difficult to study directly. Integrated population models (IPMs) empower researchers to estimate vital rates for organisms that have cryptic or widely dispersing early life stages by integrating multiple demographic data sources. For a stream‐inhabiting frog ( Rana boylii ) that is declining through much of its range in Oregon and California, USA, we collected egg‐mass counts and capture–mark–recapture data on adults from two populations in California to fit IPMs that estimate adult abundance and the survival rate of both marked and unobserved life stages. Estimates of adult abundance based on long‐term monitoring of egg‐mass counts showed that study populations fluctuated greatly inter‐annually but were stable at longer timescales (i.e., decades). Adult female survival during 5–6 yr of capture–mark–recapture study periods was nearly equal in each population. Survival rate of R. boylii eggs to the subadult stage is low on average (0.002) but highly variable among years depending on post‐oviposition stream flow. Population viability analysis showed that survival of adult and subadult life stages has the greatest proportional effect on population growth; the survival of egg and tadpole life stages, however, is more malleable by management interventions. For example, simulations showed head‐starting of tadpoles, salvaging stranded egg masses, and limiting aseasonal pulsed flows could dramatically reduce the threat of extirpation. This study demonstrates the value of integrating multiple demographic data sources to construct models of population dynamics in species with complex life histories.

California↗
USGS2022

Redundancy analysis reveals complex den use patterns by eastern spotted skunks, a conditional specialist

Wildlife managers tasked with understanding habitat and resource selection at the population level attempt to characterize patterns in nature that aid and inform conservation. Resource selection functions (RSFs), such as discrete choice analyses, are the standard convention to characterize the effects of habitat attributes on resource selection patterns. These tools are invaluable for wildlife management and conservation and have proven successful in numerous studies. However, the analysis of small datasets using RSF becomes problematic when attempting to account for complex sources of variation, and the inclusion of factors such as weather or intrinsic variation on target species' response may produce models with poor predictive ability. We compared the application of generalized linear mixed-effects modeling (GLMM) and redundancy analysis (RDA) on Appalachian spotted skunk ( Spilogale putorius putorius ) den selection data at four study sites within the George Washington, Jefferson, and Monongahela National Forests, and surrounding private lands in the Appalachian Mountains of western Virginia and northeastern West Virginia. We assessed the need for the inclusion of alternative sources of variation (i.e., weather conditions and individual intrinsic variation) in addition to standard habitat attributes to better identify sources of variation in den selection. The RDA elucidated complex and opposing relationships, whereby den type use was based on reproductive status or weather condition, which were not evident in the GLMM model that relied solely on habitat measures. Our results demonstrated the importance of examining resource selection data using multivariate techniques in addition to conventional discrete choice analyses to better understand intricate habitat–species relationships, especially for small datasets. Furthermore, from our analyses, we proposed that spotted skunks are neither a true generalist nor specialist species. We introduced and define the term “conditional specialist” to represent a species that is conditionally selective of a given resource in response to one or more current environmental or intrinsic conditions.

Viginia, West Virginia↗
USGS2019

Complexities, context, and new information about the Elwha River

Recently, Hand et al. (2018) discussed the socio- ecological complexities surround-ing natural resource policy, science, and management in the Columbia River Basin, using a case study of dam removal on the Elwha River in Washington State (WebFigure 1a). We feel compelled to provide additional historical context and correct some of the information provided by Hand et al. about the Elwha. The his-toric removals of the two Elwha River dams – a long- anticipated project that was decades in the making – have been touted by some as an environmental success story following the project’s completion in 2014. As with any complex endeavor, critical analyses and lessons learned continue to emerge, and will likely benefit future projects.

Washington↗
USGS2018

Comparison of groundwater age models for assessing nitrate loading, transport pathways, and management options in a complex aquifer system

In an aquifer system with complex hydrogeology, mixing of groundwater with different ages could occur associated with various flow pathways. In this study, we applied different groundwater age estimation techniques (lumped parameter model, and numerical model) to characterize groundwater age distributions and the major pathways of nitrate contamination in the Gosan agricultural field, Jeju Island. According to the lumped parameter model, groundwater age in the study area could be explained by the binary mixing of the young groundwater (4-33 years) and the old water component (>60 years). The complex hydrogeologic regimes and local heterogeneity observed in the study area (multi-layered aquifer, well leakage hydraulics) were particularly well reflected in the numerical model. The numerical model predicted that the regional aquifer of Gosan responded to the fertilizer applications more rapidly (mean age: 9.7-22.3 years) than as estimated by other models. Our study results demonstrated that application and comparison of multiple age estimation methods can be useful to understand better the flow regimes and the mixing characteristics of groundwater with different ages (pathways), hence, to reduce the risk of improper groundwater management plan arising from the aquifer heterogeneity.

Jeju Island↗
USGS2022

Thermal performance of the electron transport system Complex III in seven Alabama fishes

Management of fish populations for conservation in thermally variable systems requires an understanding of the fish's underlying physiology and responses to thermal stress. Physiological research at the organismal level provides information on the overall effects of stressors such as extreme temperature fluctuations. While experiments with whole organisms provide information as to the overall effects of temperature fluctuations, biochemical assays of thermal stress provide direct results of exposure that are both sensitive and specific. Electron transport system (ETS; Complex III) assays quantify a rate-limiting step of respiratory enzymes. Parameters that can be estimated via this approach include optimum thermal temperature ( T opt ) and optimal breadth of thermal performance ( T breadth ), which can both be related to organismal-level temperature thresholds. We exposed enzymes of seven fish species (native fish chosen to represent a typical community in Alabama streams) to temperatures in the range 11–44°C. The resultant enzymatic thermal performance curves showed that T opt , the lower temperature for enzyme optimal thermal performance ( T low ), the upper temperature for enzyme optimal thermal performance ( T up ), and T breadth differed among species. Relationships between enzymatic activity and temperature for all fish followed a pattern of steadily increasing enzyme activity to T opt before gradually decreasing with increasing temperature. A comparison of our enzyme optimum and upper-temperature limit results versus published critical thermal maxima values supports that ETS Complex III assays may be useful for assessing organismal-level thermal tolerance.

JEZ-A: Ecological and Integrative Physiology↗
USGS2014

Genome complexity in the coelacanth is reflected in its adaptive immune system

We have analyzed the available genome and transcriptome resources from the coelacanth in order to characterize genes involved in adaptive immunity. Two highly distinctive IgW-encoding loci have been identified that exhibit a unique genomic organization, including a multiplicity of tandemly repeated constant region exons. The overall organization of the IgW loci precludes typical heavy chain class switching. A locus encoding IgM could not be identified either computationally or by using several different experimental strategies. Four distinct sets of genes encoding Ig light chains were identified. This includes a variant sigma-type Ig light chain previously identified only in cartilaginous fishes and which is now provisionally denoted sigma-2. Genes encoding α/β and γ/δ T-cell receptors, and CD3, CD4, and CD8 co-receptors also were characterized. Ig heavy chain variable region genes and TCR components are interspersed within the TCR α/δ locus; this organization previously was reported only in tetrapods and raises questions regarding evolution and functional cooption of genes encoding variable regions. The composition, organization and syntenic conservation of the major histocompatibility complex locus have been characterized. We also identified large numbers of genes encoding cytokines and their receptors, and other genes associated with adaptive immunity. In terms of sequence identity and organization, the adaptive immune genes of the coelacanth more closely resemble orthologous genes in tetrapods than those in teleost fishes, consistent with current phylogenomic interpretations. Overall, the work reported described herein highlights the complexity inherent in the coelacanth genome and provides a rich catalog of immune genes for future investigations.

Journal of Experimental Zoology Part B: Molecular ↗
USGS2015

Rapid water quality change in the Elwha River estuary complex during dam removal

Dam removal in the United States is increasing as a result of structural concerns, sedimentation of reservoirs, and declining riverine ecosystem conditions. The removal of the 32 m Elwha and 64 m Glines Canyon dams from the Elwha River in Washington, U.S.A., was the largest dam removal project in North American history. During the 3 yr of dam removal—from September 2011 to August 2014—more than ten million cubic meters of sediment was eroded from the former reservoirs, transported downstream, and deposited throughout the lower river, river delta, and nearshore waters of the Strait of Juan de Fuca. Water quality data collected in the estuary complex at the mouth of the Elwha River document how conditions in the estuary changed as a result of sediment deposition over the 3 yr the dams were removed. Rapid and large-scale changes in estuary conditions—including salinity, depth, and turbidity—occurred 1 yr into the dam removal process. Tidal propagation into the estuary ceased following a large sediment deposition event that began in October 2013, resulting in decreased salinity, and increased depth and turbidity in the estuary complex. These changes have persisted in the system through dam removal, significantly altering the structure and functioning of the Elwha River estuary ecosystem.

Washington↗
USGS2002

Effects of a coastal golf complex on water quality, periphyton, and seagrass

The objective of this study was to provide baseline information on the effects of a golf course complex on water quality, colonized periphyton, and seagrass meadows in adjacent freshwater, near-coastal, and wetland areas. The chemical and biological impacts of the recreational facility, which uses reclaimed municipal wastewater for irrigation, were limited usually to near-field areas and decreased seaward during the 2-year study. Concentrations of chromium, copper, and organochlorine pesticides were below detection in surface water, whereas mercury, lead, arsenic, and atrazine commonly occurred at all locations. Only mercury and lead exceeded water quality criteria. Concentrations of nutrients and chlorophyll a were greater in fairway ponds and some adjacent coastal areas relative to reference locations and Florida estuaries. Periphyton ash free dry weight and pigment concentrations statistically differed but not between reference and non-reference coastal areas. Biomass of Thalassia testudinum (turtle grass) was approximately 43% less in a meadow located adjacent to the golf complex (P < 0.05). The results of the study suggest that the effects of coastal golf courses on water quality may be primarily localized and limited to peripheral near-coastal areas. However, this preliminary conclusion needs additional supporting data. ?? 2002 Elsevier Science (USA).

Florida↗
USGS2016

Complexity Theory

A complex system consists of many interacting parts, generates new collective behavior through self organization, and adaptively evolves through time. Many theories have been developed to study complex systems, including chaos, fractals, cellular automata, self organization, stochastic processes, turbulence, and genetic algorithms.

Book chapter↗
USGS2025

Complexity and integration of recreational fisheries

Recreational fisheries are interconnected, complex, adaptive systems characterized by multiple direct and indirect interactions among ecological and human subsystems. This is important for many reasons, including that feedbacks between the social and ecological dimensions lead to difficult-to-predict, often entirely unexpected, outcomes and because many management and governance systems have multiple objectives that can involve social (e.g. fisher satisfaction), economic (e.g. license revenue), and ecological (e.g. fish conservation) dimensions. Embracing a social-ecological-system perspective can usher in an improved era of recreational fisheries science and management. Interdisciplinary approaches that unite experts across disciplines (e.g. social and ecological sciences) to create a unique theoretical, conceptual, and methodological identity are needed to gather crucial information from recreational fishers, quantify and predict fisher behaviours and outcomes from these behaviours, and integrate these findings into fisheries management. In this chapter, we lay the conceptual foundation for recreational fisheries as coupled social-ecological systems that are also complex and adaptive, and discuss the interdisciplinary approach to operationalize this book’s vision.

Book chapter↗
USGS1990

Mineralized and unmineralized calderas in Spain; Part II, evolution of the Rodalquilar caldera complex and associated gold-alunite deposits

The Rodalquilar caldera complex is located in the western part of the Cabo de Gata volcanic field in southeastern Spain and is the first documented example of epithermal gold-alunite mineralization within a caldera in Europe. The Rodalquilar caldera is an oval collapse structure having a maximum diameter of 8 km and formed at 11 Ma from eruption of the Cinto ash-flow tuff. The oval Lomilla caldera, with a diameter of 2 km, is nested within the central resurgent dome of the older Rodalquilar caldera. The Lomilla caldera resulted from the eruption of the Lazaras ash-flow tuff which was ponded within the moat of the Rodalquilar caldera. The last phase of volcanic activity in the caldera complex was the emplacement of hornblende andesite flows and intrusions. This magmatic event resulted in structural doming of the caldera, opening of fractures and faults, and provided the heat source for the large hydrothermal systems which deposited quartz-alunite type gold deposits and base metal vein systems. The gold-alunite deposits are enclosed in areas of intense acid sulfate alteration and localized in ring and radial faults and fractures present in the east wall of the Lomilla caldera. Like other acid-sulfate type deposits, the Rodalquilar gold-alunite deposits are closely related in time and space to porphyritic, intermediate composition magma emplaced along caldera structures but unrelated to the caldera forming magmatic system. ?? 1990 Springer-Verlag.

Mineralium Deposita↗
USGS1993

Multiphase inclusions in plagioclase from anorthosites in the Stillwater Complex, Montana: implications for the origin of the anorthosites

Multiphase inclusions, consisting of clinopyroxene+ilmenite+apatite, occur within cumulus plagioclase grains from anorthosites in the Stillwater Complex, Montana, and in other rocks from the Middle Banded series of the intrusion. The textures and constant modal mineralogy of the inclusions indicate that they were incorporated in the plagioclase as liquid droplets that later crystallized rather than as solid aggregates. Their unusual assemblage, including a distinctive manganiferous ilmenite and the presence of baddeleyite (ZrO2), indicates formation from an unusual liquid. A process involving silicater liquid immiscibility is proposed, whereby small globules of a liquid enriched in Mg, Fe, Ca, Ti, P, REE, Zr and Mn exsolved from the main liquid that gave rise to the anorthosites, became trapped in the plagioclase, and later crystallized to form the inclusions. The immiscibility could have occurred locally within compositional boundaries around crystallizing plagioclase grains or it could have occurred pervasively throughout the liquid. It is proposed that the two immiscible liquids were analogous, n terms of their melt structures, to immiscible liquid pairs reported in the literature both in experiments and in natural basalts. For the previously reported pairs, immiscibility is between a highly polymerized liquid, typically granitic in composition, and a depolymerized liquid, typically ferrobasaltic in composition. In the case of the anorthosites, the depolymerized liquid is represented by the inclusions, and the other liquid was a highly polymerized aluminosilicate melt with a high normative plagioclase content from which the bulk of the anorthosites crystallized. Crystallization of the anorthosites from this highly polymerized liquid accounts for various distinctive textural and chemical features of the anorthosites compared to other rocks in the Stillwater Complex. A lack of correlation between P contents and chondrite-normalized rare earth element (REE) ratios of plagioclase separates indicates that the amount of apatite in the inclusions is too low to affect the REE signature of the plagioclase separates. Nevertheless, workers should use caution when attempting REE modelling studies of cumulates having low REE contents, because apatite-bearing inclusions can potentially cause problems. ?? 1993 Springer-Verlag.

Contributions to Mineralogy and Petrology↗
USGS1977

Application of Sr and O isotope relations to the petrogenesis of the alkaline rocks of the Red Hill complex, New Hampshire, USA

The Red Hill ring complex in central New Hampshire is composed of apparently cogenetic syenites, nepheline-sodalite syenite, and granite. The ages and petrogenetic relations among five of the six recognized units have been investigated by rubidiumstrontium and oxygen isotope analysis of whole rocks and separated minerals. Whole-rock samples from three syenite units are consistent with a single Rb-Sr isochron which gives an age of 198??3 m.y. and an initial (87Sr/86Sr)o ratio of 0.70330??0.00016 (??2 sigma; ??=1.42?? 10-11y-1). However, Sr isotope data for two other units, nepheline syenite and granite, are not consistent with this isochron but rather indicate higher initial ratios which range from 0.7033 to about 0.707. Whole-rock O isotope analyses give ??18O values which range from+6.2 to+9.3??? Sr and O isotope analyses on mineral separates indicate that observed whole-rock variations in (87Sr/86Sr)o are primary and are not due to any secondary process. The fact that the isotope systematics correlate with rock type, suggests that crustal interaction is likely to have played a significant role in the development of this over-and undersaturated association. Such process(es), while still not fully delineated, could be of fundamental importance to the genesis of associations of critically undersaturated and oversaturated intrusives. The data support the idea that interaction between magmas and crustal materials strongly influenced the compositional relations of similar complexes elsewhere including those of the White Mountain magma series. ?? 1977 Springer-Verlag.

Contributions to Mineralogy and Petrology↗
USGS1986

Changes in complex resistivity during creep in granite

A sample of Westerly granite was deformed under constant stress conditions: a pore pressure of 5 MPa, a confining pressure of 10 MPa, and an axial load of 170 MPa. Pore volume changes were determined by measuring the volume of pore fluid (0.01 M KClaq) injected into the sample. After 6 days of creep, characterized by accelerating volumetric stain, the sample failed along a macroscopic fault. Measurements of complex resistivity over the frequency range 0.001-300 Hz, taken at various times during creep, showed a gradual increase in both conductivity and permittivity. When analysed in terms of standard induced polarization (IP) techniques, the changing complex resistivity resulted in systematic changes in such parameters as percent frequency effect and chargeability. These results suggest that it may be possible to monitor the development of dilatancy in the source region of an impending earthquake through standard IP techniques. ?? 1986 Birka??user Verlag.

Pure and Applied Geophysics PAGEOPH↗
USGS1972

The complex filling of alae crater, Kilauea Volcano, Hawaii

Since February 1969 Alae Crater, a 165-m-deep pit crater on the east rift of Kilauea Volcano, has been completely filled with about 18 million m 3 of lava. The filling was episodic and complex. It involved 13 major periods of addition of lava to the crater, including spectacular lava falls as high as 100 m, and three major periods of draining of lava from the crater. Alae was nearly filled by August 3, 1969, largely drained during a violent ground-cracking event on August 4, 1969, and then filled to the low point on its rim on October 10, 1969. From August 1970 to May 1971, the crater acted as a reservoir for lava that entered through subsurface tubes leading from the vent fissure 150 m away. Another tube system drained the crater and carried lava as far as the sea, 11 km to the south. Much of the lava entered Alae by invading the lava lake beneath its crust and buoying the crust upward. This process, together with the overall complexity of the filling, results in a highly complicated lava lake that would doubtless be misinterpreted if found in the fossil record.

Hawaii↗
USGS2025

Noble and base metal distribution and processes affecting ore tenors in the disrupted lower stratigraphy of the Stillwater Complex, USA

Exploration continues for contact-style Ni-Cu sulfide and chromitite-associated PGE mineralization in ultramafic rocks of the Stillwater Complex. At the Iron and Chrome Mountain areas, massive sulfides occur along the complex’s footwall contact and anomalous concentrations of PGE+Au are associated with the three lowermost chromitite seams. Southeast of Chrome Mountain, magmatic layering is highly disrupted by the presence of faults, magmatic breccias, serpentinized discordant dunites, pyroxenite pegmatoids, and disaggregated chromitite seams. The bulk rock chemistry, sulfide chemistry, and noble metal mineralogy of samples from this area were examined to determine the deportment of PGE and processes that led to enrichments in PGE, Au, Cu, Co and Ni. Results show that a sulfide liquid was the principal collector of PGE. If sulfide liquid was initially deposited with chromite, it was disaggregated or redistributed by subsequent melt or fluid infiltration, which may have resulted in the offset of peak PGE(+Cu, Ni) from peak Cr 2 O 3 concentrations, and upgraded PGE tenors. Upon cooling, PGE exsolved from sulfides to form discrete bismuth tellurides, arsenides, arsenic sulfides, antimonides, and alloys, commonly along the margins of sulfide globules. Calculated metal tenors are highest in the disseminated sulfides southwest of Chrome Mountain, whereas massive and net-textured sulfides near the Iron Mountain-Camp zone represent monosulfide solid solution cumulates. At progressively shallower levels, higher metal tenors combined with lower S/Se ratios are consistent with increasing R-factors from 100 to 100,000. Serpentinization and talc-tremolite alteration resulted in S loss through partial replacement of sulfides by secondary silicate+carbonate+magnetite+sulfide assemblages, further upgrading Ni-Cu-PGE tenors. The present work shows that processes responsible for the disruption of magmatic layering and post-magmatic fluid alteration along the intrusion’s lower contact led to noble and base metal enrichments.

Montana↗