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At least 217 records · Page 12Linked to original sources
USGS2024

The underlying causes of differential migration: Assumptions, hypotheses, and predictions

Mechanisms governing the migratory decisions of birds have long fascinated ecologists and sparked considerable debate. Identifying factors responsible for variation in migration distance, also known as differential migration, has been a popular approach to understanding the mechanisms underlying migratory behaviour more generally. However, research progress has been slowed by the continued testing of overlapping, non-mechanistic, and circular predictions among a small set of historically entrenched hypotheses. We highlight the body size hypothesis and suggest that the predictions commonly tested have impeded progress because body size relationships with migration distance are predictions made by several distinct hypotheses with contrasting mechanisms. The cost of migration itself has not been adequately accounted for in most hypotheses, and we propose two flight efficiency hypotheses with time- and energy-minimizing mechanisms that allow individuals to mitigate the risks inherent to longer migrations. We also advance two conceptual versions of the social dominance hypothesis based on two distinct underlying mechanisms related to distance minimization and food maximization that will help clarify the role of competition in driving migratory decisions. Overall, we describe and refine 12 mechanistic hypotheses proposed to explain differential migration (along with several other special-case hypotheses), seven of which have underlying mechanisms related to food limitation as past research has identified this to be an important driver of differential migration. We also thoroughly reviewed 145 publications to assess the amount of support for 10 critical assumptions underlying alternative hypotheses for differential migration in birds. Our review reveals that surprisingly few studies explicitly evaluate assumptions within a differential migration context. Generating and testing strong predictions and critical assumptions underlying mechanisms of alternative hypotheses will improve our ability to differentiate among these explanations of differential migration. Additionally, future intraspecific progress will be greatest if investigators continue to focus on mechanisms underlying variation in migration distance within rather than among demographic classes, as previous research has found differing mechanisms to be responsible for differential migration among demographic classes. Interspecifically, a thorough comparative analysis that seeks to explain variation in migration distance among species would broaden both our understanding of the mechanisms regulating current differential migration patterns and those that led to the evolution of migration more generally. Collectively, we provide a framework that, together with advances in animal-borne tracking and other technology, can be used to advance our understanding of the causes of differential migration distance, and migratory decisions more generally.

Biological Reviews↗
USGS2000

Monitoring air quality in mountains: Designing an effective network

A quantitatively robust yet parsimonious air-quality monitoring network in mountainous regions requires special attention to relevant spatial and temporal scales of measurement and inference. The design of monitoring networks should focus on the objectives required by public agencies, namely: 1) determine if some threshold has been exceeded (e.g., for regulatory purposes), and 2) identify spatial patterns and temporal trends (e.g., to protect natural resources). A short-term, multi-scale assessment to quantify spatial variability in air quality is a valuable asset in designing a network, in conjunction with an evaluation of existing data and simulation-model output. A recent assessment in Washington state (USA) quantified spatial variability in tropospheric ozone distribution ranging from a single watershed to the western third of the state. Spatial and temporal coherence in ozone exposure modified by predictable elevational relationships (∼ 1.3 ppbv ozone per 100 m elevation gain) extends from urban areas to the crest of the Cascade Range. This suggests that a sparse network of permanent analyzers is sufficient at all spatial scales, with the option of periodic intensive measurements to validate network design. It is imperative that agencies cooperate in the design of monitoring networks in mountainous regions to optimize data collection and financial efficiencies.

Washington↗
USGS2011

Interface between black-footed ferret research and operational conservation

Questions and problems that emerged during operational conservation of black-footed ferrets ( Mustela nigripes ) have been addressed by a wide variety of studies. Early results from such studies often were communicated orally during meetings of recovery groups and in written form using memoranda, unpublished reports, and theses. Typically, implementation of results preceded their publication in widely distributed journals. Many of these studies eventually were published in journals, and we briefly summarize the contents of 8 volumes and special features of journals that have been dedicated to the biology of ferrets and issues in ferret recovery. This year marks the 30th anniversary of rediscovery of the black-footed ferret, and the 7 papers of the following Special Feature summarize data collected over nearly that span of time.

Journal of Mammalogy↗
USGS2022

Highly specialized recreationists contribute the most to the citizen science project eBird

Contributory citizen science projects (hereafter “contributory projects”) are a powerful tool for avian conservation science. Large-scale projects such as eBird have produced data that have advanced science and contributed to many conservation applications. These projects also provide a means to engage the public in scientific data collection. A common challenge across contributory projects like eBird is to maintain participation, as some volunteers contribute just a few times before disengaging. To maximize contributions and manage an effective program that has broad appeal, it is useful to better understand factors that influence contribution rates. For projects capitalizing on recreation activities (e.g., birding), differences in contribution levels might be explained by the recreation specialization framework, which describes how recreationists vary in skill, behavior, and motives. We paired data from a survey of birders across the United States and Canada with data on their eBird contributions (n = 28,926) to test whether those who contributed most are more specialized birders. We assigned participants to 4 contribution groups based on eBird checklist submissions and compared groups’ specialization levels and motivations. More active contribution groups had higher specialization, yet some specialized birders were not active participants. The most distinguishing feature among groups was the behavioral dimension of specialization, with active eBird participants owning specialized equipment and taking frequent trips away from home to bird. Active participants had the strongest achievement motivations for birding (e.g., keeping a life list), whereas all groups had strong appreciation motivations (e.g., enjoying the sights and sounds of birding). Using recreation specialization to characterize eBird participants can help explain why some do not regularly contribute data. Project managers may be able to promote participation, particularly by those who are specialized but not contributing, by appealing to a broader suite of motivations that includes both appreciation and achievement motivations, and thereby increase data for conservation.

Ornithological Applications↗
USGS1951

Summary of the research work of the Trace Elements Section, Geochemistry and Petrology Branch, for the period April 1, 1948-December 31, 1950

This report summarizes the research work of the Trace Elements Section, Geochemistry and Petrology Branch, from the organization of the Section in April 1948 to December 31, 1950. The research undertaken thus far consists of laboratory and related field studies in the following fields: 1. Mineralogic and petrologic investigations of radioactive rocks, minerals, and ores. 2. Investigations of chemical methods of analysis for uranium, thorium, and other elements and compounds in radioactive materials, and related chemical problems. 3. Investigations of spectrographic methods of analysis for a wide variety of elements in radioactive materials. 4. Investigations of radiometric methods of analysis as applied to radioactive materials. It should be emphasized that the work undertaken thus far, described under the headings "Future work", is almost entirely in the nature of investigations supporting the field appraisal of known important uraniferous deposits. A comprehensive program of more fundamental research was submitted in April 1949 in a report entitled "Proposed program of desirable research in the geochemistry of uranium," but funds for this work have not been authorized. It is hoped, however, that funds to support basic research of the type indicated in that report may be available in the future. This report does not cover the analytical work of the Section nor the public-sample program. The analytical work has been summarized for the fiscal year 1950 in the report, "Numerical summary of the analytical work of the Trace Elements Section, Geochemistry and Petrology Branch, for the fiscal year 1950," by John C. Rabbit, U.S. Geol. Survey Trace Elements Memorandum Rept. 174, October 1950. A report on the public-sample program is in preparation. Much of the material in this report has been paraphrased from reports prepared by members of the Section. My special thanks are due them; to Earl Ingerson, chief of the Geochemistry and Petrology Branch of the Survey, for his critical review; to my secretary, Marie Woolihan, for her aid in collecting material; and to Virginia Layne of the editorial staff of the Section for typing the manuscript and the multilith mats.

Trace Elements Investigations↗
USGS2014

Ground‐water problems in Ohio, with special reference to the industrial area of Cincinnati in Butler and Hamilton counties

The importance of ground‐water as a natural resource to be used for water‐supply and industrial purposes is often overlooked by the general public. A recent survey conducted by the Engineering News‐Record [see 1 of “References” at end of paper], based on data obtained from State Sanitary engineers, shows that 9,100 out of a total of 12,700 public water‐supply systems in the United States obtain water from underground sources. Of the total population served by public water‐supplies, about 28 per cent or 22,500,000 people are served by systems using ground‐water. In addition to the quantities of water pumped for public supplies, many million gallons of ground‐water are pumped daily for rural, domestic, and industrial purposes. In many of the cities that have public supplies from surface‐sources, there is nevertheless heavy pumping from private wells for industrial purposes.

Ohio↗
USGS2018

Evaluating and managing environmental water regimes in a water-scarce and uncertain future

While the number of environmental flows and water science programmes continues to grow across the globe, there remains a critical need to better balance water availability in support of human and ecological needs and to recognise the environment as a legitimate user of water. In water‐stressed areas, this recognition has resulted in friction between water users in the public and private sectors. An opportunity exists for practitioners to be on the forefront of the science determining best practices for supporting environmental water regimes. This Special Issue brings together a collection of environmental flows science and water management papers organised around three major themes: (1) method development and testing; (2) application case studies; and (3) efficacy evaluation. Contents of this Special Issue are intended to foster collaboration and broaden transferability of the information, technical tools, models and methods needed to support environmental water management programmes. The technical sophistication of methods and modelling tools, while important to the advancement of environmental water science, may come at the expense of easily interpretable outcomes that positively influence management decisions. Researchers need to be more proactive in translating the results of advanced modelling methodologies into user‐friendly tools and methods. This will allow stakeholders and water managers to proactively test alternative water allocation scenarios to help address growing human water demands in the face of droughts and changes in climatic patterns. The application of environmental flows science and water management strategies cannot be done in isolation. Implementation involves a complex decision‐making process that integrates ecological, hydrologic and social science across diverse multifaceted governance systems and requires active stakeholder involvement. Scientists and managers must strengthen partnerships at multiple scales to develop sensible science investment strategies so that collective knowledge can be translated into wise environmental water management decisions.

Freshwater Biology↗
USGS2016

Status of groundwater quality in the Santa Barbara Study Unit, 2011: California GAMA Priority Basin Project

Groundwater quality in the 48-square-mile Santa Barbara study unit was investigated in 2011 as part of the California State Water Resources Control Board’s Groundwater Ambient Monitoring and Assessment (GAMA) Program Priority Basin Project. The study unit is mostly in Santa Barbara County and is in the Transverse and Selected Peninsular Ranges hydrogeologic province. The GAMA Priority Basin Project is carried out by the U.S. Geological Survey in collaboration with the California State Water Resources Control Board and Lawrence Livermore National Laboratory. The GAMA Priority Basin Project was designed to provide a statistically unbiased, spatially distributed assessment of the quality of untreated groundwater in the primary aquifer system of California. The primary aquifer system is defined as that part of the aquifer corresponding to the perforation interval of wells listed in the California Department of Public Health database for the Santa Barbara study unit. This status assessment is intended to characterize the quality of groundwater resources in the primary aquifer system of the Santa Barbara study unit, not the treated drinking water delivered to consumers by water purveyors. The status assessment for the Santa Barbara study unit was based on water-quality and ancillary data collected in 2011 by the U.S. Geological Survey from 23 sites and on water-quality data from the California Department of Public Health database for January 24, 2008–January 23, 2011. The data used for the assessment included volatile organic compounds; pesticides; pharmaceutical compounds; two constituents of special interest, perchlorate and N -nitrosodimethylamine (NDMA); and naturally present inorganic constituents, such as major ions and trace elements. Relative-concentrations (sample concentration divided by the health- or aesthetic-based benchmark concentration) were used to evaluate groundwater quality for those constituents that have federal or California regulatory and non-regulatory benchmarks for drinking-water quality. For inorganic, organic, and special-interest constituents, a relative-concentration greater than 1.0 indicates a concentration greater than the benchmark and is classified as high. Inorganic constituents are classified as moderate if relative-concentrations are greater than 0.5 and less than or equal to 1.0 and are classified as low if relative-concentrations are less than or equal to 0.5. For organic and special-interest constituents, the boundary between moderate and low relative-concentrations was set at 0.1. Aquifer-scale proportion was used as the primary metric for evaluating regional-scale groundwater quality. High aquifer-scale proportion is defined as the areal percentage of the primary aquifer system with a relative-concentration greater than 1.0 for a particular constituent or class of constituents. Moderate and low aquifer-scale proportions were defined as the areal percentage of the primary aquifer system that had moderate and low relative-concentrations, respectively. Two statistical approaches—grid based and spatially weighted—were used to calculate aquifer-scale proportions for individual constituents and constituent classes. Grid-based and spatially weighted estimates were comparable in this the study (within 90-percent confidence intervals). Grid-based results were selected for use in the status assessment unless, as was observed in a few cases, a grid-based result was zero and the spatially weighted result was not zero, in which case, the spatially weighted result was used. Inorganic constituents that have human-health benchmarks were present at high relative-concentrations in 5.3 percent of the primary aquifer system and at moderate concentrations in 32 percent. High aquifer-scale proportions of inorganic constituents primarily were a result of high aquifer-scale proportions of boron (5.3 percent) and fluoride (5.3 percent). Inorganic constituents that have aesthetic-based benchmarks, referred to as secondary maximum contaminant levels, were present at high relative-concentrations in 58 percent of the primary aquifer system and at moderate concentrations in 37 percent. Iron, manganese, sulfate, and total dissolved solids were the inorganic constituents with secondary maximum contaminant levels present at high relative-concentrations. In contrast, organic and special-interest constituents that have health-based benchmarks were not detected at high relative-concentrations in the primary aquifer system. Of the 218 organic constituents analyzed, 10 were detected—9 that had human-health benchmarks. Organic constituents were present at moderate relative-concentrations in 11 percent of the primary aquifer system. The moderate aquifer-scale proportions were a result of moderate relative-concentrations of the volatile organic compounds methyl tert- butyl ether (MTBE, 11 percent) and 1,2-dichloroethane (5.6 percent). The volatile organic compounds 1,1,1-trichloroethane, 1,1-dichloroethane, bromodichloromethane, chloroform, MTBE, and perchloroethene (PCE); the pesticide simazine; and the special-interest constituent perchlorate were detected at more than 10 percent of the sites in the Santa Barbara study unit. Perchlorate was present at moderate relative-concentrations in 50 percent of the primary aquifer system. Pharmaceutical compounds and NDMA were not detected in the Santa Barbara study unit.

California↗
USGS2000

Water resources data, Pennsylvania, water year 2000. Volume 2. Susquehanna and Potomac River Basins

Introduction The Water Resources Division of the U.S. Geological Survey, in cooperation with State, municipal, and Federal agencies, collects a large amount of data pertaining to the water resources of Pennsylvania each water year. These data, accumulated during many water years, constitute a valuable data base for developing an improved understanding of the water resources of the State. To make these data readily available to interested parties outside the Geological Survey, these data are published annually in this report series entitled "Water Resources Data - Pennsylvania, Volumes 1, 2, and 3." Volume 1 contains data for the Delaware River Basin; Volume 2, the Susquehanna and Potomac River Basins; and Volume 3, the Ohio and St. Lawrence River Basins. This report, Volume 2, contains: (1) discharge records for 83 continuous-record streamflow-gaging stations, 16 partial-record stations, and 24 special study and miscellaneous streamflow sites; (2) elevation and contents records for 12 lakes and reservoirs; (3) water-quality records for 11 streamflow gaging stations and 70 partial-record and project stations; and (4) water-level records for 30 ground-water network observation wells and water-quality analyses of ground water from 8 wells; and (5) water-quality analyses at 60 special study ground-water wells. Additional water data collected at various sites not involved in the systematic data-collection program may also be presented. Publications similar to this report are published annually by the Geological Survey for all States. For the purpose of archiving, these official reports have an identification number consisting of the two-letter State abbreviation, the last two digits of the water year, and the volume number. For example, this volume is identified as "U.S. Geological Survey Water-Data Report PA-00-2." These water-data reports, beginning with the 1971 water year, are for sale as paper copy or microfiche by the National Technical Information Service, U.S. Department of Commerce, Springfield, VA 22161. The annual series of Water Data Reports for Pennsylvania began with the 1961 water-year report and contained only data relating to quantities of surface water. With the 1964 water year, a companion report (part 2) was introduced that contained only data relating to water quality. Beginning with the 1975 water year the report was changed to three volumes (by river basin), with each volume containing data on quantities of surface water, quality of surface and ground water, and ground-water levels. Prior to the introduction of this series and for several years concurrent with it, water-resources data for Pennsylvania were published in U.S. Geological Survey Water-Supply Papers. Data on stream discharge and stage, and on lake or reservoir contents and stage, through September 1960, were published annually under the title "Surface-Water Supply of the United States," which was released in numbered parts as determined by natural drainage basins. For the 1961-70 water years, these data were published in two 5-year reports. Data prior to 1961 are included in two reports: "Compilation of Records of Surface Waters of the United States through 1950," and "Compilation of Records of Surface Waters of the United States, October 1950 to September 1960." Data for Pennsylvania are published in Parts 1, 3, and 4. Data on chemical quality, temperature, and suspended sediment for the 1941-70 water years were published annually under the title "Quality of Surface Waters of the United States," and ground-water levels for the 1935-74 water years were published annually under the title "Ground-Water Levels in the United States." The above mentioned Water-Supply Papers may be consulted in the libraries of the principal cities of the United States and may be purchased from the U.S. Geological Survey, Information Services, Box 25286, Denver, CO 80225. Information for ordering specific reports may be obtained from the Pennsylvania District Office at the address on the back of the title page or by phoning the Scientific and Technical Products Section at (717) 730-6940. Information on the availability of unpublished data or statistical analyses may be obtained from the District Information Specialist by telephone at (717) 730-6916 or by FAX at (717) 730-6997.

Water Data Report↗
USGS2001

Water Resources Data, Pennsylvania, Water Year 2001, Volume 2. Susquehanna and Potomac River Basins

Introduction The Water Resources Division of the U.S. Geological Survey, in cooperation with State, municipal, and Federal agencies, collects a large amount of data pertaining to the water resources of Pennsylvania each water year. These data, accumulated during many water years, constitute a valuable data base for developing an improved understanding of the water resources of the State. To make these data readily available to interested parties outside the Geological Survey, these data are published annually in this report series entitled "Water Resources Data - Pennsylvania, Volumes 1, 2, and 3." Volume 1 contains data for the Delaware River Basin; Volume 2, the Susquehanna and Potomac River Basins; and Volume 3, the Ohio and St. Lawrence River Basins. This report, Volume 2, contains: (1) discharge records for 83 continuous-record streamflow-gaging stations, 15 partial-record stations, and 24 special study and miscellaneous streamflow sites; (2) elevation and contents records for 12 lakes and reservoirs; (3) water-quality records for 9 streamflow gaging stations and 73 partial-record and project stations; and (4) water-level records for 36 ground-water network observation wells and water-quality analyses of ground water from 8 wells; (5) water-quality analyses at 123 special study ground-water wells; and, (6) miscellaneous water-level measurements at 80 special study ground-water wells. Additional water data collected at various sites not involved in the systematic data-collection program may also be presented. Publications similar to this report are published annually by the Geological Survey for all States. For the purpose of archiving, these official reports have an identification number consisting of the two-letter State abbreviation, the last two digits of the water year, and the volume number. For example, this volume is identified as "U.S. Geological Survey Water-Data Report PA-01-2." These water-data reports, beginning with the 1971 water year, are for sale as paper copy or microfiche by the National Technical Information Service, U.S. Department of Commerce, Springfield, VA 22161. The annual series of Water Data Reports for Pennsylvania began with the 1961 water-year report and contained only data relating to quantities of surface water. With the 1964 water year, a companion report (part 2) was introduced that contained only data relating to water quality. Beginning with the 1975 water year the report was changed to three volumes (by river basin), with each volume containing data on quantities of surface water, quality of surface and ground water, and ground-water levels. Prior to the introduction of this series and for several years concurrent with it, water-resources data for Pennsylvania were published in U.S. Geological Survey Water-Supply Papers. Data on stream discharge and stage, and on lake or reservoir contents and stage, through September 1960, were published annually under the title "Surface-Water Supply of the United States," which was released in numbered parts as determined by natural drainage basins. For the 1961-70 water years, these data were published in two 5-year reports. Data prior to 1961 are included in two reports: "Compilation of Records of Surface Waters of the United States through 1950," and "Compilation of Records of Surface Waters of the United States, October 1950 to September 1960." Data for Pennsylvania are published in Parts 1, 3, and 4. Data on chemical quality, temperature, and suspended sediment for the 1941-70 water years were published annually under the title "Quality of Surface Waters of the United States," and ground-water levels for the 1935-74 water years were published annually under the title "Ground-Water Levels in the United States." The above mentioned Water-Supply Papers may be consulted in the libraries of the principal cities of the United States and may be purchased from the U.S. Geological Survey, Information Services, Box 25286, Denver, CO 80225. Information for ordering specific reports may be obtained from the Pennsylvania District Office at the address on the back of the title page or by phoning the Scientific and Technical Products Section at (717) 730-6940. Information on the availability of unpublished data or statistical analyses may be obtained from the District Information Specialist by telephone at (717) 730-6916 or by FAX at (717) 730-6997.

Water Data Report↗
USGS2013

Computing ordinary least-squares parameter estimates for the National Descriptive Model of Mercury in Fish

A specialized technique is used to compute weighted ordinary least-squares (OLS) estimates of the parameters of the National Descriptive Model of Mercury in Fish (NDMMF) in less time using less computer memory than general methods. The characteristics of the NDMMF allow the two products X'X and X'y in the normal equations to be filled out in a second or two of computer time during a single pass through the N data observations. As a result, the matrix X does not have to be stored in computer memory and the computationally expensive matrix multiplications generally required to produce X'X and X'y do not have to be carried out. The normal equations may then be solved to determine the best-fit parameters in the OLS sense. The computational solution based on this specialized technique requires O(8 p 2 +16 p ) bytes of computer memory for p parameters on a machine with 8-byte double-precision numbers. This publication includes a reference implementation of this technique and a Gaussian-elimination solver in preliminary custom software.

Techniques and Methods↗
USGS2019

A draft decision framework for the National Park Service Interior Region 5 bison stewardship strategy

The Department of the Interior Bison Conservation Initiative calls for its bureaus to plan and implement collaborative American bison conservation and to ensure involvement by tribal, state, and local governments and the public in that conservation. Four independently managed and geographically separated National Park Service (NPS) units in Interior Region 5 (IR5) preserve bison and other components of a formerly contiguous Great Plains landscape. Management of bison in IR5 parks has historically been specific to each park, and livestock and range management science informed much of the decision making. In the past two decades, NPS has shifted away from managing bison from this livestock-based perspective towards a wildlife stewardship approach, including ensuring their long-term adaptive potential and considering them as just one part of a complex ecosystem. This shift requires a more holistic and cooperative approach to stewardship that is challenging not only because of limitations in funding and fluctuations in leadership priorities, but also because of the constraints imposed by the parks’ relatively small, fenced areas. The IR5 NPS Bison Stewardship Strategy (“Strategy”) will help the NPS to meet its responsibilities in cooperative stewardship of bison. The Strategy will serve to organize and consolidate the NPS’s legal and policy responsibilities within a framework of collectively defined values and objectives to support the careful and transparent decision-making processes that both guide and transcend park-specific planning. This report describes a preliminary decision framework for the Strategy, including the context, the fundamental objectives, and a range of alternative strategies developed and considered through two workshops and a series of conference calls with NPS personnel, stakeholders, and outside experts with an interest in IR5 NPS bison stewardship. Although not the Strategy itself, this framework serves as the Strategy’s starting point and identifies 14 fundamental objectives, falling in four major themes: Persistence of Wild and Healthy Bison 1. Maximize the long-term persistence of bison in IR5 parks 2. Maximize the long-term adaptive capacity of bison in North America 3. Maximize the wildness of the bison herds 4. Maximize humane treatment of bison, while allowing natural processes to occur Supporting Tribal Buffalo Culture 5. Improve relationships, trust, and communication with Tribes to enhance shared stewardship of bison within and beyond IR5 6. Maximize the number of live, healthy bison that can be transferred to tribal herds Persistence of Native Ecological Communities and Processes 7. Maximize structural and compositional heterogeneity of native prairie plant communities across space and time within each park 8. Maximize the abundance and diversity of animal species of special concern 9. Minimize the loss of native grassland within each park 10. Minimize the abundance of exotic plants in the park landscape 11. Maximize riparian area and wetland integrity Public Outreach 12. Maximize the number of healthy, wild bison that are visible to the public 13. Maximize the safety of visitors 14. Maximize public understanding of the past, present, and future of bison and Native Americans in the Great Plains The terms “minimize” and “maximize” in these objectives describe the desired direction for each individual objective. Finding the right balance among these objectives and any others identified in further work is one of the central challenges in developing the Strategy. To that end, this report also demonstrates and describes potential methods for evaluating how well alternative strategies would achieve each of the fundamental objectives.

Natural Resource Report↗
USGS2017

Environmental Escherichia coli : Ecology and public health implications - A review

Escherichia coli is classified as a rod-shaped, Gram-negative bacterium in the family Enterobacteriaceae . The bacterium mainly inhabits the lower intestinal tract of warm-blooded animals, including humans, and is often discharged into the environment through feces or wastewater effluent. The presence of E. coli in environmental waters has long been considered as an indicator of recent fecal pollution. However, numerous recent studies have reported that some specific strains of E. coli can survive for long periods of time, and potentially reproduce, in extra-intestinal environments. This indicates that E. coli can be integrated into indigenous microbial communities in the environment. This naturalization phenomenon calls into question the reliability of E. coli as a fecal indicator bacterium (FIB). Recently, many studies reported that E. coli populations in the environment are affected by ambient environmental conditions affecting their long-term survival. Large-scale studies of population genetics provide the diversity and complexity of E. coli strains in various environments, affected by multiple environmental factors. This review examines the current knowledge on the ecology of E. coli strains in various environments in regards to its role as a FIB and as a naturalized member of indigenous microbial communities. Special emphasis is given on the growth of pathogenic E. coli in the environment, and the population genetics of environmental members of the genus Escherichia . The impact of environmental E. coli on water quality and public health is also discussed.

Journal of Applied Microbiology↗
USGS1989

Stream temperature investigations: field and analytic methods

This document provides guidance to the user of the U.S. Fish and Wildlife Service’s Stream Network Temperature Model (SNTEMP). Planning a temperature study is discussed in terms of understanding the management objectives and ensuring that the questions will be accurately answered with the modeling approach being used. A sensitivity analysis of SNTEMP is presented to illustrate which input variables are most important in predicting stream temperatures. This information helps prioritize data collection activities, highlights the need for quality control, focuses on which parameters can be estimated rather than measured, and offers a broader perspective on management options in terms of knowing where the biggest temperature response will be felt. All of the major input variables for stream geometry, meteorology, and hydrology are discussed in detail. Each variable is defined, with guidance given on how to measure it, what kind of equipment to use, where to obtain it from another agency, and how to calculate it if the data are in a form other than that required by SNTEMP. Examples are presented for the various forms in which water temperature, discharge, and meteorological data are commonly found. Ranges of values for certain input variables that are difficult to measure of estimate are given. Particular attention is given to those variables not commonly understood by field biologists likely to be involved in a stream temperature study. Pertinent literature is cited for each variable, with emphasis on how other people have treated particular problems and on results they have found. Model calibration, verification, and validation steps are defined and outlines, with measures of "goodness-of-fit" given for comparing simulated stream temperatures with observed values. The question of how good is good enough is explored, and attention is given to the kinds of simulation and data reduction errors that one should be alert for. Some special cases dealing with ice and reservoir temperature are mentioned. Special attention is given to understanding micro-thermal habitats that act as important thermal refugia under low flow conditions; their causes, extent, and management implications are discussed. Alternative public domain stream and reservoir temperature models are contrasted with SNTEMP. A distinction is made between steady-flow and dynamic-flow models and their respective capabilities. Regression models are offered as an alternative approach for some situations, with appropriate mathematical formulas suggested. Appendices provide information on State and Federal agencies that are good data sources, vendors for field instrumentation, and small computer programs useful in data reduction.

Report↗
USGS2015

Geotechnical aspects in the epicentral region of the 2011, M w 5.8 Mineral, Virginia earthquake

A reconnaissance team documented the geotechnical and geological aspects in the epicentral region of the M w (moment magnitude) 5.8 Mineral, Virginia (USA), earthquake of 23 August 2011. Tectonically and seismically induced ground deformations, evidence of liquefaction, rock slides, river bank slumps, ground subsidence, performance of earthen dams, damage to public infrastructure and lifelines, and other effects of the earthquake were documented. This moderate earthquake provided the rare opportunity to collect data to help assess current geoengineering practices in the region, as well as to assess seismic performance of the aging infrastructure in the region. Ground failures included two marginal liquefaction sites, a river bank slump, four minor rockfalls, and a ~4-m-wide, ~12-m-long, ~0.3-m-deep subsidence on a residential property. Damage to lifelines included subsidence of the approaches for a bridge and a water main break to a heavily corroded, 5-cm-diameter valve in Mineral, Virginia. Observed damage to dams, landfills, and public-use properties included a small, shallow slide in the temporary (“working”) clay cap of the county landfill, damage to two earthen dams (one in the epicentral region and one further away near Bedford, Virginia), and substantial structural damage to two public school buildings.

Virginia↗
USGS2001

The role of native birds and other wildlife on the emergence of zoonotic diseases

Wildlife can be an important source of transmission of infectious disease to humans. One potential transmission route involves hunting and fishing, both common activities in the United States and worldwide. For example, during 1996, approximately 11 million Americans, about 40 percent of the total population 16 years of age and older, took part in some recreational activity relating to wildlife and fish. Another potential route of infection focuses on urban and suburban environments. These locations are of special concern because of their increasing role as wildlife habitat, the greater interface between humans and wildlife that takes place within those environments, the paucity of knowledge about disease in those wildlife populations, and the general lack of orderly management for wildlife within those environments. In the wild, several trends are contributing to the growing importance of zoonotic diseases. First, the spectrum of infectious diseases affecting wildlife today is greater than at any time during the previous century. Second, the occurrence of infectious diseases has changed, from sporadic, self-limiting outbreaks that generally resulted in minor losses to frequently occurring events that generally result in major losses of wildlife. Third, disease emergence has occurred on a worldwide scale in a broad spectrum of wildlife species and habitats. Given the scope of the problem, current disease surveillance efforts are inadequate. Few state wildlife agencies allocate personnel and resources to address wildlife disease, despite their statutory responsibility for managing nonmigratory wildlife. Some state agencies provide minimal support for regional programs based at universities. At the federal level, the primary surveillance effort is conducted by the National Wildlife Health Center, operated by the U.S. Geological Survey. Outside of government, some veterinary schools, agriculture diagnostic laboratories, and other programs provide additional information on animal diseases, primarily by examining carcasses of dead wildlife submitted for analysis, and individual university-based researchers carry out a variety of studies. Typically, information about the occurrence of disease in free-ranging wildlife is derived from surveys and mortality events in areas where wildlife observations by agencies and the public are frequent enough to detect their occurrence before carcasses are removed by scavengers and predatory animals. The result is that disease occurrence is grossly underreported, heavily biased toward mortality events, and biased toward species of special concern and interest, such as game and endangered species. Therefore, the available information should be viewed as the “proverbial tip of the iceberg” relative to disease activity within wildlife populations.

National Academy of Science.↗
USGS2014

Nocturnal field use by fall migrating American woodcock in the Delta of Arkansas

The American woodcock ( Scolopax minor ) population has declined since the late 1960s across its range and is now considered a species of special concern. Research on woodcock habitat use during migration and migratory routes through the Central Flyway has been limited. We assessed woodcock phenology, estimated density, and nocturnal habitat use in fields on public lands in the lower Mississippi Alluvial Valley portion of Arkansas during November and December of 2010 and 2011. We used all-terrain vehicles to survey woodcock along transects in 67 fields of 8 field types. We analyzed data using hierarchical distance sampling. We detected woodcock from the first week in November through the third week in December but in low numbers. We did not detect woodcock in millet or rice fields, whereas woodcock had the highest estimated densities in unharvested soybeans. All other crop type-post-harvest management combinations had low woodcock densities. We did not detect woodcock in fields <8 ha or >40 ha. Woodcock in the lower Mississippi Alluvial Valley may benefit from management for unharvested soybean fields of moderate size (approx. 8-40ha).

Journal of Wildlife Management↗
USGS2024

Status and understanding of groundwater quality in the Mojave Basin Domestic-Supply Aquifer study unit, 2018—California GAMA Priority Basin Project

Groundwater quality in the western part of the Mojave Desert in San Bernardino County, California, was investigated in 2018 as part of the California State Water Resources Control Board Groundwater Ambient Monitoring and Assessment Program Priority Basin Project. The Mojave Basin Domestic-Supply Aquifer study unit (MOBS) region was divided into two study areas—floodplain and regional—to assess differences between the two major aquifers used for drinking water supply in the area. This assessment characterized the quality of ambient groundwater and not the quality of treated drinking water. The study included three components: (1) a status assessment, which characterized the quality of groundwater resources used for domestic drinking-water supply in the floodplain and regional study areas; (2) a brief understanding assessment, which evaluated factors that could potentially affect the quality of groundwater used by domestic wells in the region; and (3) a comparative assessment between the groundwater resources used by domestic wells and public-supply wells in the two study areas. The domestic-well assessment was based on data collected by the U.S. Geological Survey from 48 domestic wells in January–May 2018. The public-supply assessment was based on data for samples from 322 public-supply wells in 2008–18, either collected by the U.S. Geological Survey or compiled from the California State Water Resources Control Boards Division of Drinking Water publicly available database. Concentrations of water-quality constituents in ambient groundwater were compared to regulatory and non-regulatory benchmarks typically used by the State of California and Federal agencies as health-based or aesthetic standards for public drinking water. Relative concentrations, defined as the measured concentration divided by the benchmark concentration, were classified as high (greater than 1.0), moderate (greater than 0.5 for inorganic constituents or 0.1 for organic and special-interest constituents, and not high), or low (concentrations lower than moderate). The floodplain and regional study areas were divided into 15 and 35 grid cells, respectively, and grid-based methods were used to compute the areal proportions of the two study areas with high, moderate, or low relative concentrations of individual constituents and classes of constituents. For the domestic-supply assessment, one or more inorganic constituents with health-based benchmarks were detected at high relative concentrations in 58 percent of the regional study area and 13 percent of the floodplain study area. The inorganic constituents with health-based benchmarks detected at high relative concentrations in the regional study area were arsenic, chromium and hexavalent chromium, fluoride, adjusted gross alpha particle activity, uranium, molybdenum, strontium, and nitrate; only arsenic was detected at high relative concentrations in the floodplain study area. One or more inorganic constituents with secondary maximum contaminant level benchmarks were detected at high concentrations in 15 and 6.7 percent of the regional and floodplain study areas, respectively. The constituents detected at high relative concentrations in the regional study area were total dissolved solids, chloride, sulfate, and iron; only total dissolved solids and sulfate were detected at high relative concentrations in the floodplain study area. Organic constituents were not detected at moderate or high relative concentrations in either the regional or floodplain study areas. Volatile organic compounds were detected at low relative concentrations in 21 and 27 percent of the regional and floodplain study areas, respectively, and pesticides were detected at low relative concentrations in 9.1 and 20 percent of the regional and floodplain study areas, respectively. The only individual organic constituent detected in more than 10 percent of either study area was the trihalomethane trichloromethane. Total coliform bacteria were detected in 15 and 27 percent of the grid wells in the regional and floodplain study areas, respectively. The greater prevalence of high relative concentrations of many inorganic constituents in the regional study area compared to the floodplain area likely indicates the greater diversity of geologic material at depth in aquifer material and generally finer-grained alluvium compared to the floodplain study area combined with generally older groundwater that has had more contact time with aquifer materials. In general, trace element concentrations (1) increased with increasing groundwater age, (2) increased with distance from recharge sources in the mountains, and (3) increased with closer proximity to some types of geological units. In general, groundwater from domestic wells in the floodplain study area is young, with most samples containing a component of modern groundwater based on tritium and unadjusted carbon-14 activities, whereas groundwater from domestic wells in the regional study area generally is old, with most samples having unadjusted carbon-14 ages of 5,000–40,000 years. Public-supply wells in MOBS generally were deeper than domestic wells and presumably are in contact with older, more weathered alluvium that may have more mobile trace elements, such as arsenic or uranium. However, only 26 percent of the public-supply regional study area had high relative concentrations of inorganic constituents, compared to 58 percent for the domestic regional study area. The percentages of the public-supply and domestic floodplain study areas with high relative concentrations of inorganic constituents were 11 and 13 percent, respectively. The ages of groundwater used by public-supply and domestic wells in each study area were similar, which was not expected given the greater depth of the public-supply wells. Three potential factors may contribute to these results: (1) greater spatial footprint of domestic well network, which may result in domestic wells pumping groundwater from fractured bedrock or mineralized areas not used by public-supply wells; (2) greater pumping rates in public-supply wells, resulting in more water being withdrawn from coarse-grained, heterogeneous alluvium than finer-grained layers, which may have higher concentrations of (or more mobile) inorganic constituents; and (3) a greater degree of well management with public-supply wells, which may include pausing use of or decommissioning wells if treating or blending water is not feasible to lower constituent concentrations.

California↗