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At least 217 records · Page 12Linked to original sources

Climate futures for lizards and snakes in western North America may result in new species management issues

We assessed changes in fundamental climate-niche space for lizard and snake species in western North America under modeled climate scenarios to inform natural resource managers of possible shifts in species distributions. We generated eight distribution models for each of 130 snake and lizard species in western North America under six time-by-climate scenarios. We combined the highest-performing models per species into a single ensemble model for each scenario. Maps were generated from the ensemble models to depict climate-niche space for each species and scenario. Patterns of species richness based on climate suitability and niche shifts were calculated from the projections at the scale of the entire study area and individual states and provinces, from Canada to Mexico. Squamate species' climate-niche space for the recent-time climate scenario and published known ranges were highly correlated ( r = 0.81). Overall, reptile climate-niche space was projected to move northward in the future. Sixty-eight percent of species were projected to expand their current climate-niche space rather than to shift, contract, or remain stable. Only 8.5% of species were projected to lose climate-niche space in the future, and these species primarily occurred in Mexico and the southwestern U.S. We found few species were projected to lose all suitable climate-niche space at the state or province level, although species were often predicted to occupy novel areas, such as at higher elevations. Most squamate species were projected to increase their climate-niche space in future climate scenarios. As climate niches move northward, species are predicted to cross administrative borders, resulting in novel conservation issues for local landowners and natural resource agencies. However, information on species dispersal abilities, landscape connectivity, biophysical tolerances, and habitat suitability is needed to contextualize predictions relative to realized future niche expansions.

Ecology and Evolution

Integrating growth and survival models for flexible estimation of size-dependent survival in a cryptic, endangered snake

Estimates of demographic rates for animal populations and individuals have many applications for ecological and conservation research. In many animals, survival is size-dependent, but estimating the form of the size–survival relationship presents challenges. For elusive species with low recapture rates, individuals’ size will be unknown at many points in time. Integrating growth and capture–mark–recapture models in a Bayesian framework empowers researchers to impute missing size data, with uncertainty, and include size as a covariate of survival, capture probability, and presence on-site. If there is no theoretical expectation for the shape of the size–survival relationship, spline functions can allow for fitting flexible, data-driven estimates. We use long-term capture–mark–recapture data from the endangered San Francisco gartersnake ( Thamnophis sirtalis tetrataenia ) to fit an integrated growth–survival model. Growth models showed that females reach longer asymptotic lengths than males and that the magnitude of sexual size dimorphism differed among populations. The capture probability and availability of San Francisco gartersnakes for capture increased with snout–vent length. The survival rate of female snakes exhibits a nonlinear relationship with snout–vent length (SVL), with survival flat between 300 mm and 550 mm SVL before decreasing for females between 550 mm and 700 mm SVL. For male snakes, survival decreased for adult males >550 mm SVL. The survival rates of the smallest and largest San Francisco gartersnakes were highly uncertain because recapture rates were very low for these sizes. By integrating growth and survival models and using penalized splines, we found support for size-dependent survival in San Francisco gartersnakes. Our results have applications for devising management activities for this endangered subspecies, and our methods could be applied broadly to the study of size-dependent demography among animals.

California

Performance of subyearling fall Chinook salmon tagged with 8‐, 9‐, and 12‐mm passive integrated transponder tags in the Snake River

Inferences based on tagged individuals from a population are limited in part by the minimum size of fish that can be tagged. Smaller tags allow a greater proportion of a population to be represented by tagging and should reduce potential tag effects on fish performance. We evaluated different performance metrics of juvenile fall Chinook Salmon Oncorhynchus tshawytscha tagged with 8‐, 9‐, and 12‐mm PIT tags in the Snake River. We did not find evidence that posttagging mortality of 45–49‐mm‐FL fish tagged with 8‐mm tags was higher than the posttagging mortality of larger fish tagged with 9‐ and 12‐mm tags. The incisions of fish tagged with 8‐mm tags using 14‐guage needles healed faster than those of fish tagged with larger tags using 12‐guage needles. For individuals that received 8‐mm tags, growth in length and mass was higher for 45–49‐mm fish than for 50–59‐mm fish and 60‐mm and larger fish. Growth of the larger size‐classes (50–59 and ≥60 mm) was also generally higher for those tagged with 8‐mm tags compared to those tagged with 9‐ and 12‐mm tags, respectively. There were no strong relationships between tag burden (i.e., tag weight expressed as a percentage of fish weight) at the time of tagging and growth metrics for any tag size or fish size‐class. Releases made to compare the detection efficiency of the three tag types in the juvenile fish bypass at Lower Granite Dam, Washington, showed that 99–100% of all fish were detected. Survival of fish from rearing areas to Lower Granite Dam generally increased with fish size and varied by year, but there was no strong evidence of a tag size effect. The 8‐mm PIT tag allowed us to represent a larger portion (i.e., 6.2–24.1%) of the subyearling fall Chinook Salmon population in the Snake River without compromising fish performance or detectability at the dam.

Washington

'Snake River (SR)-type' volcanism at the Yellowstone hotspot track: Distinctive products from unusual, high-temperature silicic super-eruptions

A new category of large-scale volcanism, here termed Snake River (SR)-type volcanism, is defined with reference to a distinctive volcanic facies association displayed by Miocene rocks in the central Snake River Plain area of southern Idaho and northern Nevada, USA. The facies association contrasts with those typical of silicic volcanism elsewhere and records unusual, voluminous and particularly environmentally devastating styles of eruption that remain poorly understood. It includes: (1) large-volume, lithic-poor rhyolitic ignimbrites with scarce pumice lapilli; (2) extensive, parallel-laminated, medium to coarse-grained ashfall deposits with large cuspate shards, crystals and a paucity of pumice lapilli; many are fused to black vitrophyre; (3) unusually extensive, large-volume rhyolite lavas; (4) unusually intense welding, rheomorphism, and widespread development of lava-like facies in the ignimbrites; (5) extensive, fines-rich ash deposits with abundant ash aggregates (pellets and accretionary lapilli); (6) the ashfall layers and ignimbrites contain abundant clasts of dense obsidian and vitrophyre; (7) a bimodal association between the rhyolitic rocks and numerous, coalescing low-profile basalt lava shields; and (8) widespread evidence of emplacement in lacustrine-alluvial environments, as revealed by intercalated lake sediments, ignimbrite peperites, rhyolitic and basaltic hyaloclastites, basalt pillow-lava deltas, rhyolitic and basaltic phreatomagmatic tuffs, alluvial sands and palaeosols. Many rhyolitic eruptions were high mass-flux, large volume and explosive (VEI 6-8), and involved H2O-poor, low-??18O, metaluminous rhyolite magmas with unusually low viscosities, partly due to high magmatic temperatures (900-1,050??C). SR-type volcanism contrasts with silicic volcanism at many other volcanic fields, where the fall deposits are typically Plinian with pumice lapilli, the ignimbrites are low to medium grade (non-welded to eutaxitic) with abundant pumice lapilli or fiamme, and the rhyolite extrusions are small volume silicic domes and coule??es. SR-type volcanism seems to have occurred at numerous times in Earth history, because elements of the facies association occur within some other volcanic fields, including Trans-Pecos Texas, Etendeka-Paran, Lebombo, the English Lake District, the Proterozoic Keewanawan volcanics of Minnesota and the Yardea Dacite of Australia. ?? Springer-Verlag 2007.

Bulletin of Volcanology

Quantifying stream-loss recovery in a spring using dual-tracer injections in the Snake Creek drainage, Great Basin National Park, Nevada, USA

Simultaneous short-pulse injections of two tracers (sodium bromide [Br – ] and fluorescein dye) were made in a losing reach of Snake Creek in Great Basin National Park, Nevada, USA, to evaluate the quantity of stream loss through permeable carbonates that resurfaces at a spring approximately 10 km down drainage. A revised hydrogeologic cross section for a possible flow path of the infiltrated Snake Creek water is presented, and the results may inform water management in the region. First arrival and peak concentration of the two tracers occurred at 9.5 and 12.7 days after injection, respectively. Fracture transport simulations indicate that Br – preferentially diffuses into immobile regions of the aquifer, and this diffusive flux is likely responsible for the major differences in the breakthrough curves. When considering the diffusive tracer flux, total apparent Br – and fluorescein dye recoveries were 16.9–22.1% and 21.7–24.3%, respectively. These findings imply that consideration of diffusive flux and long-term monitoring in fracture-dominated flow may support accurate quantification of tracer recovery. In addition, the apparent power law slopes of the breakthrough tails for both tracers were steeper at early times than have been attributed to heterogeneous advection or channeling in meter-scale tests, but the late-time Br – power law slope becomes less steep than has been attributed to diffusive exchange. These deviations may reflect fracture transport patterns that occur at larger scales.

Nevada

Mapping the response of riparian vegetation to possible flow reductions in the Snake River, Idaho

This study was initiated to determine the general effects of potential flow reductions in the middle Snake River (Swan Falls Dam downstream to the Idaho-Oregon border) on its riparian vegetation. Considerable water from the river is currently used to irrigate the adjacent Snake River Plain, and increased demand for water in the future is likely. The problem was subdivided into several research components including: field investigation of the existing riparian vegetation and river environment, hydrological modeling to calculate the effects of one flow scenario on hydrological regime, and integration of vegetation and hydrological modeling results with a Geographic Information System (GIs) to map the riverbed, island, and bank conditions under the scenario flow. Field work was conducted in summer 1990. Riparian vegetation along 40 U.S. Geological Survey cross-sections was sampled at approximately 1.25 mile intervals within the 50 mile long study area. Cross-section and flow data were provided by the U.S. Geological. Survey. GIs mapping of land/water cover using ARC/INFO was based on 1987 aerial photographs. Riverbed contour maps were produced by linking cross-section data, topographic contouring software ( anudem ), and GIs. The maps were used to spatially display shallow areas in the channel likely to become vegetated under reduced flow conditions. The scenario would reduce flow by approximately 20% (160 MAF) and lower the river an average of 0.5 ft. The scenario flow could cause a drop in the elevation of the riparian zone comparable to the drop in mean river level and expansion of the lower riparian zone into shallow areas of the channel. The GIs maps showed that the shallow areas of the channel more likely to become vegetated under the scenario flow are located in wide reaches near islands. Some possible ecological consequences of the scenario flow include a greater area of riparian habitat, reduced flow velocity and sedimentation in shallow channels leading to channel deactivation, increased island visitation and nest predation by predatory mammals due to loss of a water barrier between some islands and banks, and larger populations of alien plant species in the new riparian vegetation.

Idaho, Oregon

Climate impacts on source contributions and evaporation to flow in the Snake River Basin using surface water isoscapes (δ2H and δ18O)

Rising global temperatures are expected to decrease the precipitation amount that falls as snow, causing greater risk of water scarcity, groundwater overdraft, and fire in areas that rely on mountain snowpack for their water supply. Streamflow in large river basins varies with the amount, timing, and type of precipitation, evapotranspiration, and drainage properties of watersheds; however, these controls vary in time and space making it difficult to identify the areas contributing most to flow and when. In this study, we separate the evaporative influences from source values of water isotopes from the Snake River Basin in the western United States (US) to relate source area to flow dynamics. We developed isoscapes (δ 2 H and δ 18 O) for the basin and found that isotopic composition of surface water in small watersheds is primarily controlled by longitude, latitude, and elevation. To examine temporal variability in source contributions to flow, we present a six-year record of Snake River water isotopes from King Hill, Idaho after removing evaporative influences. During periods of low flow, source water values were isotopically lighter indicating a larger contribution to flow from surface waters in the highest elevation, eastern portion of the basin. River evaporation increases were evident during summer likely reflecting climate, changing water availability, and management strategies within the basin. Our findings present a potential tool for identifying critical portions of basins contributing to river flow as climate fluctuations alter flow dynamics. This tool can be applied in other continental-interior basins where evaporation may obscure source water isotopic signatures.

Idaho, Montana, Oregon, Wyoming

Comparative evaluation of molecular diagnostic tests for Nucleospora salmonis and prevalence in migrating juvenile salmonids from the Snake River, USA

Nucleospora salmonis is an intranuclear microsporidian that primarily infects lymphoblast cells and contributes to chronic lymphoblastosis and a leukemia-like condition in a range of salmonid species. The primary goal of this study was to evaluate the prevalence of N. salmonis in out-migrating juvenile hatchery and wild Chinook salmon Oncorhynchus tshawytscha and steelhead O. mykiss from the Snake River in the U.S. Pacific Northwest. To achieve this goal, we first addressed the following concerns about current molecular diagnostic tests for N. salmonis : (1) nonspecific amplification patterns by the published nested polymerase chain reaction (nPCR) test, (2) incomplete validation of the published quantitative PCR (qPCR) test, and (3) whether N. salmonis can be detected reliably from nonlethal samples. Here, we present an optimized nPCR protocol that eliminates nonspecific amplification. During validation of the published qPCR test, our laboratory developed a second qPCR test that targeted a different gene sequence and used different probe chemistry for comparison purposes. We simultaneously evaluated the two different qPCR tests for N. salmonis and found that both assays were highly specific, sensitive, and repeatable. The nPCR and qPCR tests had good overall concordance when DNA samples derived from both apparently healthy and clinically diseased hatchery rainbow trout were tested. Finally, we demonstrated that gill snips were a suitable tissue for nonlethal detection of N. salmonis DNA in juvenile salmonids. Monitoring of juvenile salmonid fish in the Snake River over a 3-year period revealed low prevalence of N. salmonis in hatchery and wild Chinook salmon and wild steelhead but significantly higher prevalence in hatchery-derived steelhead. Routine monitoring of N. salmonis is not performed for all hatchery steelhead populations. At present, the possible contribution of this pathogen to delayed mortality of steelhead has not been determined.

Journal of Aquatic Animal Health

Multiple rod–cone and cone–rod photoreceptor transmutations in snakes: Evidence from visual opsin gene expression

In 1934, Gordon Walls forwarded his radical theory of retinal photoreceptor ‘transmutation’. This proposed that rods and cones used for scotopic and photopic vision, respectively, were not fixed but could evolve into each other via a series of morphologically distinguishable intermediates. Walls' prime evidence came from series of diurnal and nocturnal geckos and snakes that appeared to have pure-cone or pure-rod retinas (in forms that Walls believed evolved from ancestors with the reverse complement) or which possessed intermediate photoreceptor cells. Walls was limited in testing his theory because the precise identity of visual pigments present in photoreceptors was then unknown. Subsequent molecular research has hitherto neglected this topic but presents new opportunities. We identify three visual opsin genes, rh1 , sws1 and lws , in retinal mRNA of an ecologically and taxonomically diverse sample of snakes central to Walls' theory. We conclude that photoreceptors with superficially rod- or cone-like morphology are not limited to containing scotopic or photopic opsins, respectively. Walls' theory is essentially correct, and more research is needed to identify the patterns, processes and functional implications of transmutation. Future research will help to clarify the fundamental properties and physiology of photoreceptors adapted to function in different light levels.

Proceedings of the Royal Society B

The effect of coachwhip presence on body size of North American racers suggests competition between these sympatric snakes

When sympatric species compete, character divergence may help maintain coexistence. Snakes are often found in species-rich assemblages while exploiting similar resources; because snake body size is a relatively plastic trait that determines the range of prey sizes an individual may consume, divergence in body size between sympatric species may arise as a result of interspecific interactions. The North American racer, Coluber constrictor, and the larger coachwhip, Coluber flagellum, have a close taxonomic relationship and similar foraging strategies. Therefore, we hypothesized that C. constrictor would be smaller where they co-occur with C. flagellum, as compared to where C. flagellum is absent, throughout the southeastern extent of their range. To evaluate this hypothesis, we obtained data on body size for 2321 adult C. constrictor and 526 adult C. flagellum, along with habitat data and other potentially important factors influencing body size. Coluber constrictor was smaller than elsewhere when in peninsular Florida, in pine forests, on hydric soils and in the presence of the larger and potentially competing C. flagellum. Body size of C. flagellum did not vary by any measured habitat variables. The trends we documented are consistent with the hypothesis that C. constrictor body size is influenced by several variables, including co-occurrence with C. flagellum.

Alabama;Florida;Georgia;Louisiana;Mississippi;Sout

Coral snake mimicry: Does it occur?

Field observations and experimental evidence refute previous objections to the coral snake mimicry hypothesis. Concordant color pattern variation spanning hundreds of miles and several presumed venomous models strongly suggests that several harmless or mildly venomous colubrid snakes are indeed mimics of highly venomous elapids.

Science

Track of the Yellowstone hotspot: Young and ongoing geologic processes from the Snake River Plain to the Yellowstone Plateau and Tetons

This field trip highlights various stages in the evolution of the Snake River Plain–Yellowstone Plateau bimodal volcanic province, and associated faulting and uplift, also known as the track of the Yellowstone hotspot. The 16 Ma Yellowstone hotspot track is one of the few places on Earth where time-transgressive processes on continental crust can be observed in the volcanic and tectonic (faulting and uplift) record at the rate and direction predicted by plate motion. Recent interest in young and possible renewed volcanism at Yellowstone along with new discoveries and synthesis of previous studies, i.e., tomographic, deformation, bathymetric, and seismic surveys, provide a framework of evidence of plate motion over a mantle plume. This 3-day trip is organized to present an overview into volcanism and tectonism in this dynamically active region. Field trip stops will include the young basaltic Craters of the Moon, exposures of 12–4 Ma rhyolites and edges of their associated collapsed calderas on the Snake River Plain, and exposures of faults which show an age progression similar to the volcanic fields. An essential stop is Yellowstone National Park, where the last major caldera-forming event occurred 640,000 years ago and now is host to the world's largest concentration of hydrothermal features (>10,000 hot springs and geysers). This trip presents a quick, intensive overview into volcanism and tectonism in this dynamically active region. Field stops are directly linked to conceptual models related to hotspot passage through this volcano-tectonic province. Features that may reflect a tilted thermal mantle plume suggested in recent tomographic studies will be examined. The drive home will pass through Grand Teton National Park, where the Teton Range is currently rising in response to the passage of the North American plate over the Yellowstone hotspot.

Idaho, Wyoming

The unexpected discovery of blind snakes (Serpentes: Typhlopidae) in Micronesia: Two new species of Ramphotyphlops from the Caroline Islands

Two new blind snakes in the genus Ramphotyphlops are described from Ulithi ( R. hatmaliyeb sp. nov. ) and Ant Atoll ( R. adocetus sp. nov. ) in the Caroline Islands, the first blind snake species known from Micronesia east of Palau (excluding Ramphotyphlops braminus ). Both species are unusual in being known only from small, low-lying atolls. They can be distinguished from other Ramphotyphlops by the combination of 22 scale rows over the length of the body; a wedge-shaped snout, without a keratinized keel; and a broad, pyriform ( R. adocetus ) or ovate ( R. hatmaliyeb ) rostral scale.

Caroline Islands

Identification of juvenile fall versus spring chinook salmon migrating through the lower Snake River based on body morphology

We tested the use of body morphology to distinguish among subyearling fall-run, subyearling spring-run, and yearling spring-run smolts of chinook salmon Oncorhynchus tshawytscha at two lower Snake River dams during the summer emigration. Based on principal-components analysis, subyearling fall-run chinook salmon had smaller heads and eyes, deeper bodies, and shorter caudal peduncles than yearling spring-run chinook salmon. Subyearling spring-run chinook salmon had characteristics of both subyearling fall-run and yearling spring-run chinook salmon. Subyearling fall-run and yearling spring-run chinook salmon were classified with more than 80% accuracy by means of discriminant analysis. Classification accuracy for subyearling spring-run chinook salmon was only 26%. We conclude that body morphology can be used to accurately identify the age of chinook salmon smolts but not the run. Therefore, genetic analyses are the only means of reliably determining the run composition of summer migrants in the lower Snake River.

Transactions of the American Fisheries Society

Detection of PIT-tagged subyearling Chinook salmon at a Snake River dam: Implications for summer flow augmentation

Rearing subyearling chinook salmon Oncorhynchus tshawytscha (≥60 mm in fork length) were captured in the Snake River and tagged with passive integrated transponders to provide an index of their survival to Lower Granite Dam, the first of eight dams encountered by seaward migrants. Water was released from reservoirs upstream of Lower Granite Dam to augment summer flows and thereby increase subyearling chinook salmon survival. Mean summer flow and maximum summer water temperature in Lower Granite Reservoir were highly correlated ( N = 4; r = −0.999). Acknowledging this correlation, we conducted two separate least-squares regressions using detection rate as the dependent variable. Detection rate at Lower Granite Dam was positively related to mean summer flow ( N = 4; r 2 = 0.993; P = 0.003) and negatively related to maximum summer water temperature ( N = 4; r 2 = 0.984; P = 0.008). Summer flow augmentation increased flow and decreased water temperature in Lower Granite Reservoir especially in low-flow years. Our results support summer flow augmentation as a beneficial interim recovery measure for enhancing survival of subyearling chinook salmon in the Snake River. Additional research should include replicate within-year releases of PIT-tagged subyearlings as well as studies of fish guidance efficiency.

Washington

Ecology of the Sand Roller (Percopsis transmontana) in a lower Snake River Reservoir, Washington

The Sand Roller ( Percopsis transmontana ), has not been abundant in the Snake River since it was first found in the system in the 1950s, but its population has apparently increased in recent years. As a result, we initiated a study to better understand its ecology in habitats of Lower Granite Reservoir. From November 2014 to October 2015, Sand Rollers were present along shorelines, with peak abundance being observed during spring months. Logistic regression analyses showed that Sand Rollers were more likely to be present in shoreline habitats at temperatures ≤18.4°C. Fish were found over a range of substrates, with the lowest odds of fish presence being associated with riprap, which is common in hydropower reservoirs. From length-frequency analysis, we suggest that Sand Roller spawning occurs primarily in May and early June. Assessment of Sand Roller diets found dipteran (chironomid) larvae and pupae were the most important prey consumed by all sizes of Sand Rollers, but Opossum Shrimp ( Neomysis mercedis ) were also prominent in diets of larger fish in shoreline and offshore habitats. At a time when the populations of so many native species are in decline, the increase of the Sand Roller population in the lower Snake River represents a positive, yet curious occurrence.

Washington

Isolation of Snake River islands and mammalian predation of waterfowl nests

In 1990–1992, we studied predation of waterfowl nests by mammalian predators on 30 islands in a 64-km reach of the Snake River in southwestern Idaho, USA, to identify river flows necessary to protect and enhance migratory bird use of Deer Flat National Wildlife Refuge. We monitored 235–314 Canada goose ( Branta canadensis ) nests each year and 122 duck nests, primarily mallard ( Anas platyrhynchos ), in 1991. We calculated island isolation as the flow energy (width × average water velocity [m 2 /sec]) a predator encountered in crossing to an island. Density of goose nests increased as island isolation increased ( P < 0.001). In contrast, visits of terrestrial predators to islands, mammalian predation of goose nests, and variance in predation rates decreased as island isolation increased ( P < 0.01). Nests were most frequently depredated by raccoons ( Procyon lotor ), coyotes ( Canis latrans ), badgers ( Taxidea taxus ), and mink ( Mustela vison ). Multiple regression models explained 67% of the variance in nest density and 48% of variance in predation rates ( P < 0.01). Variables of secondary importance relative to island isolation were island size and percentage of farmland on the adjacent mainland. Fewer geese nested ( P < 0.01) and predation rates were greater ( P = 0.06) on large islands, and more geese nested on islands adjacent to farmland ( P = 0.04). We also analyzed rates of nest predation relative to river flows for 21 islands from 1953 to 1992. Mammalian predation of goose nests decreased as island isolation increased with greater river flows ( P < 0.01). To identify levels of isolation needed to protect use of islands by nesting waterfowl, we estimated rates of change in nest densities and predation rates with island isolation for a range of regression quantiles. We then calculated levels of island isolation at river flows ranging from 110 to 340 m 3 /sec. Below flows of 250 m 3 /sec, nest predation rates increased rapidly. Flows ≥340 m 3 /sec adequately isolated Snake River islands for nesting waterfowl. Predator visitation and nest predation rates were at a low level, and variability in the rates was at a minimum for these flows.

Journal of Wildlife Management

Four new species of frogs and one new species of snake from the Chapare region of Bolivia, with notes on other species

We report on a collection of 74 frogs, 11 lots of frog eggs or tadpoles, and two snakes collected from the Chapare Region in the yungas of the eastern Andean Cordillera de Cochabamba, Bolivia. Collecting localities range from approximately 300 m to >3200 m in elevation. The specimens pertain to 23 species, probably 10 of which are undescribed. We describe four new species of frogs, one each in the genera Bufo, Centrolenella, Colostethus, and Hyla, and one new species of snake, genus Dipsas. We place Atelopus rugulosus in synonymy with A. tricolor.

Herpetological Monographs