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Evaluating the validity of using unverified indices of body condition

Condition indices are commonly used in an attempt to link body condition of birds to ecological variables of interest, including demographic attributes such as survival and reproduction. Most indices are based on body mass adjusted for structural body size, calculated as simple ratios or residuals from regressions. However, condition indices are often applied without confirming their predictive value (i.e., without being validated against measured values of fat and protein), which we term ‘unverified’ use. We evaluated the ability of a number of unverified indices frequently found in the literature to predict absolute and proportional levels of fat and protein across five species of waterfowl. Among indices we considered, those accounting for body size never predicted absolute protein more precisely than body mass, however, some indices improved predictability of fat, although the form of the best index varied by species. Further, the gain in precision by using a condition index to predict either absolute or percent fat was minimal (rise in r 2 ≤0.13), and in many cases model fit was actually reduced. Our data agrees with previous assertions that the assumption that indices provide more precise indicators of body condition than body mass alone is often invalid. We strongly discourage the use of unverified indices, because subjectively selecting indices likely does little to improve precision and might in fact decrease predictability relative to using body mass alone.

Journal of Avian Biology↗

Spatiotemporal dynamics of the Atlantic salmon (Salmo salar) Greenland fishery inferred from mixed-stock analysis

Mixed-stock fisheries refer to the exploitation of admixed fish stocks coming from different origins. We identified the North American origin of 2835 Atlantic salmon (Salmo salar) in the Greenland mixed-stock fishery during 11 years (1995-2006) at three localities using 13 microsatellites. The study included 52 baseline populations representing nine genetically distinct regional groups. The contribution of each group ranged from <1% (Maine) to 40% (Southern Qu??bec). Decreasing temporal contributions were observed for Southern Qu??bec (-22.0%) and New Brunswick (-17.4%), whereas an increasing contribution for Labrador (+14.9%) was observed during the time course of the study. The estimated regional contribution to the Greenland fishery was significantly correlated to the number of multi-sea-winter salmon regionally produced in 2002 (r = 0.79) and 2004 (r = 0.92). No difference in contribution was found between the three Greenland sampling localities. Ungava and Southern Qu??bec regions showed the highest mortality estimates caused by the fishery, ranging from 12.10% to 18.08%, for both years tested. No regional group was overrepresented in landings compared with their respective productivity. Yet, management precautions should still be taken as the fishery strongly selects large females, which could have evolutionary impacts on populations over the long term.

Canadian Journal of Fisheries and Aquatic Sciences↗

Survival, growth, and catchability of rainbow trout of four strains

Fingerling rainbow trout ( Salmo gairdneri ) of genetically different strains survived, grew, and were caught at different rates by anglers and in gill nets after release from a hatchery into a 1‐hectare pond. When two domestic strains were compared, more fish of the strain genetically selected for fast growth were caught per unit of angling effort than were fish of a strain not selected for this characteristic. When fish of a natural and domestic strain were released together, survival was higher in the natural strain, but growth was slower. Strain population estimates reflected differences in catchability and were erroneous for the strain selected for growth. These observations imply that rainbow trout of different strains vary in their suitability for different fishery management practices.

North American Journal of Fisheries Management↗

Mortality of Siberian polecats and black-footed ferrets released onto prairie dog colonies

Black-footed ferrets ( Mustela nigripes ) likely were extirpated from the wild in 1985–1986, and their repatriation depends on captive breeding and reintroduction. Postrelease survival of animals can be affected by behavioral changes induced by captivity. We released neutered Siberian polecats ( M. eversmanii ), close relatives of ferrets, in 1989–1990 on black-tailed prairie dog ( Cynomys ludovicianus ) colonies in Colorado and Wyoming initially to test rearing and reintroduction techniques. Captive-born polecats were reared in cages or cages plus outdoor pens, released from elevated cages or into burrows, and supplementally fed or not fed. We also translocated wild-born polecats from China in 1990 and released captive-born, cage-reared black-footed ferrets in 1991, the 1st such reintroduction of black-footed ferrets. We documented mortality for 55 of 92 radiotagged animals in these studies, mostly due to predation (46 cases). Coyotes ( Canis latrans ) killed 31 ferrets and polecats. Supplementally fed polecats survived longer than nonprovisioned polecats. With a model based on deaths per distance moved, survival was highest for wild-born polecats, followed by pen-experienced, then cage-reared groups. Indexes of abundance (from spotlight surveys) for several predators were correlated with mortality rates of polecats and ferrets due to those predators. Released black-footed ferrets had lower survival rates than their ancestral population in Wyoming, and lower survival than wild-born and translocated polecats, emphasizing the influence of captivity. Captive-born polecats lost body mass more rapidly postrelease than did captive-born ferrets. Differences in hunting efficiency and prey selection provide further evidence that these polecats and ferrets are not ecological equivalents in the strict sense.

Journal of Mammalogy↗

Performance of spread spectrum Global Positioning System collars on grizzly and black bears

Global Positioning System (GPS) telemetry is a prevalent tool now used in the study of large mammals. Global Positioning Systems either store the data on board the collar or contain a remote-transfer system that allows for data recovery at more frequent intervals. Spread spectrum (S–S) technology is a new mode of data transfer designed to overcome interference problems associated with narrow-band very high frequency and ultra high frequency data-transfer systems. We evaluated performance of S–S GPS radiocollars deployed on grizzly ( Ursus arctos ) and black bears ( U. americanus ). We also evaluated variables that influenced GPS fix success rates, with particular focus on animal activity, time of year, and temperature. The S–S GPS collars performed to our expectations and met study objectives; we did not experience any major problems with the data-transfer system. We observed varying rates of fix success that were directly related to recorded activity counts. Using logistic regression, we verified that activity counts were a reasonable measure of resting or feeding–traveling in both bear species. Our results showed that 73% and 79% of missed fixes, respectively, occurred when we predicted black and grizzly bears to be resting. Temperatures measured in the canister of the collar were not correlated with air temperature, suggesting posture and activity influenced canister temperature. Both measures of temperature were predictive of fix success. We did not find that fix success was related to body morphology (i.e., neck circumference, mass, and chest girth), fix interval, position of the GPS antenna relative to the sky, or sex of the bear. We conclude that fix success for both species is strongly related to activity patterns and time of year. Activity counters appear to be a reasonable measure of this behavior, and we recommend researchers consider including an activity-count system when deploying GPS collars. We also recommend researchers explore building separate models of habitat selection based upon categories of activity to account for bias in fix success associated with bear behavior.

Wyoming↗

Resource selection of the southern fox squirrel (Sciurus niger niger) in the coastal plain of Virginia

The southern fox squirrel ( Sciurus niger niger ) is a subspecies of fox squirrel that ranges from southeastern Virginia to northern Florida. Throughout its Southeastern range, southern fox squirrel habitat of natural mixed pine-hardwood forests has been fragmented by agriculture and short-rotation pine plantations. In Virginia, remaining habitat has been transformed by fire suppression on the landscape and has in turn resulted in small, disjunct populations of southern fox squirrels. We sought to identify the home range and resource utilization of southern fox squirrels in the southern Coastal Plain of Virginia. From established nest boxes, we captured, radio collared and tracked four individuals at Big Woods Wildlife Management area and Piney Grove Complex in Sussex County in 2022. We observed an average male 95% and 50% adaptive kernel home range 173.49 ha (SE = 25.73, N = 2) and 40.62 ha (SE = 5.87, N = 2), respectively and an average female 95% and 50% adaptive kernel home range of 28.51 ha (SE = 0.49, N = 2) and 4.71 ha (SE = 0.34, N = 2), respectively. At both the second and third orders of habitat selection, squirrels selected for pine savanna cover types and short fire-return intervals.

Virginia↗

Intrinsic prey preference and selection of the giant gartersnake: A threatened predator in a nonnative prey-dominated community

The introduction of exotic species into an environment can introduce great change in the trophic dynamics of native species. This is of even greater concern if the native species is of conservation concern. The giant gartersnake, Thamnophis gigas , an endemic predator of the Central Valley of California and a species of conservation concern at the state and federal levels, has declined as a result of conversion of its once vast wetland habitat to agriculture. Another anthropogenic factor contributing to this snake's changing ecology is the introduction of nonnative prey into the species' habitats. These introductions have resulted in a prey community that is almost completely composed of exotic species and have potential for considerable effects. In order to assess prey preference and selection we performed three sets of behavioral trials on naïve neonates. We examined 1) neonate prey preference in response to olfactory cues of prepared prey extracts, 2) neonate consumption of different live prey items presented simultaneously; and 3) terrestrial feeding behavior and/or latency to successful attack. Results from the olfactory study suggest that native Sierran treefrogs, Pseudacris sierra, are preferred by neonates. Results from consumption trials suggest that neonates are more likely to select frog species than fish species. This is the first study that we are aware of that examines prey selection of this threatened species and serves to inform its conservation and management.

Journal of Fish and Wildlife Management↗

Estimating cougar predation rates from GPS location clusters

We examined cougar (Puma concolor) predation from Global Positioning System (GPS) location clusters (???2 locations within 200 m on the same or consecutive nights) of 11 cougars during September-May, 1999-2001. Location success of GPS averaged 2.4-5.0 of 6 location attempts/night/cougar. We surveyed potential predation sites during summer-fall 2000 and summer 2001 to identify prey composition (n = 74; 3-388 days post predation) and record predation-site variables (n = 97; 3-270 days post predation). We developed a model to estimate probability that a cougar killed a large mammal from data collected at GPS location clusters where the probability of predation increased with number of nights (defined as locations at 2200, 0200, or 0500 hr) of cougar presence within a 200-m radius (P < 0.001). Mean estimated cougar predation rates for large mammals were 7.3 days/kill for subadult females (1-2.5 yr; n = 3, 90% CI: 6.3 to 9.9), 7.0 days/kill for adult females (n = 2, 90% CI: 5.8 to 10.8), 5.4 days/kill for family groups (females with young; n = 3, 90% CI: 4.5 to 8.4), 9.5 days/kill for a subadult male (1-2.5 yr; n = 1, 90% CI: 6.9 to 16.4), and 7.8 days/kill for adult males (n = 2, 90% CI: 6.8 to 10.7). We may have slightly overestimated cougar predation rates due to our inability to separate scavenging from predation. We detected 45 deer (Odocoileus spp.), 15 elk (Cervus elaphus), 6 pronghorn (Antilocapra americana), 2 livestock, 1 moose (Alces alces), and 6 small mammals at cougar predation sites. Comparisons between cougar sexes suggested that females selected mule deer and males selected elk (P < 0.001). Cougars averaged 3.0 nights on pronghorn carcasses, 3.4 nights on deer carcasses, and 6.0 nights on elk carcasses. Most cougar predation (81.7%) occurred between 1901-0500 hr and peaked from 2201-0200 hr (31.7%). Applying GPS technology to identify predation rates and prey selection will allow managers to efficiently estimate the ability of an area's prey base to sustain or be affected by cougar predation.

Journal of Wildlife Management↗

WATEQ, a computer program for calculating chemical equilibria of natural waters

The computer program, WATEQ, calculates the equilibrium distribution of inorganic aqueous species of major and important minor elements in natural waters using the chemical analysis and in situ measurements of temperature, pH, and redox potential. From this model, the states of reaction of the water with solid and gaseous phases are calculated. Thermodynamic stabilities of aqueous species, minerals, and gases have been selected from a careful consideration of all available experimental data. The program is written in PL-1 for IBM 360 computers.

Journal of Research of the U.S. Geological Survey↗

Information-theoretic model selection and model averaging for closed-population capture-recapture studies

Specification of an appropriate model is critical to valid statistical inference. Given the “true model” for the data is unknown, the goal of model selection is to select a plausible approximating model that balances model bias and sampling variance. Model selection based on information criteria such as AIC or its variant AIC c , or criteria like CAIC, has proven useful in a variety of contexts including the analysis of open-population capture-recapture data. These criteria have not been intensively evaluated for closed-population capture-recapture models, which are integer parameter models used to estimate population size ( N ), and there is concern that they will not perform well. To address this concern, we evaluated AIC, AIC c , and CAIC model selection for closed-population capture-recapture models by empirically assessing the quality of inference for the population size parameter N . We found that AIC-, AIC c -, and CAIC-selected models had smaller relative mean squared errors than randomly selected models, but that confidence interval coverage on N was poor unless unconditional variance estimates (which incorporate model uncertainty) were used to compute confidence intervals. Overall, AIC and AIC c outperformed CAIC, and are preferred to CAIC for selection among the closed-population capture-recapture models we investigated. A model averaging approach to estimation, using AIC, AIC c , or CAIC to estimate weights, was also investigated and proved superior to estimation using AIC-, AIC c -, or CAIC-selected models. Our results suggested that, for model averaging, AIC or AIC c should be favored over CAIC for estimating weights.

Biometrical Journal↗

Winter habitat associations of eastern spotted skunks in Virginia

Eastern spotted skunk ( Spilogale putorius ) populations have declined throughout much of their range in the eastern United States over recent decades. Declines have been attributed to habitat loss or change, increased competition with sympatric mesocarnivore species, or disease. To better understand the extant distribution of spotted skunks in the Appalachian Mountains of western Virginia, USA, we used a detection-non-detection sampling approach using baited camera traps to evaluate the influence of landscape-level environmental covariates on spotted skunk detection probability and site occupancy. We conducted camera trap surveys at 91 sites from January to May in 2014 and 2015. Spotted skunk occupancy was associated with young-aged forest stands at lower elevations and more mature forest stands at higher elevations. Both land cover types in this region can be characterized as having complex forest structure, providing cover that varies with stand age, species composition, elevation, and management regime. Our results provide insight into factors that influence spotted skunk spatial distribution and habitat selection, information that can be used to generate conservation assessments and inform management decisions.

Virginia↗

The role of palynology in paleoecological analyses of Tertiary coals

Pollen, spores, and other plant microfossils are important constituents of Tertiary coals, both as petrographic components (the maceral sporinite) and as distinctive indicators of the nature of the depositional environment in which the coal-forming peat accumulated. Palynological analyses, which have been conducted on Tertiary coals since the 1930's, play an increasingly important role in modern paleoecological analyses of coals. Among the most important factors controlling the petrographic composition and facies characteristics of coal deposits are the types and relative abundances of plants that composed the peat. At present, wetland environments in which peat accumulates (mires) range from marshes and bogs to forested swamps; each is inhabited by distinctive plant communities. These plant communities are associated with varied conditions of climate, water depth, chemistry, and nutrient supply, and the floras can be indicative of these conditions. In the Tertiary Period, plant communities of mires were also highly diverse and specialized (especially as compared with those of the Carboniferous). The dominant species in some Paleocene mire floras were gymnosperms, but continuing a trend begun in Late Cretaceous time, angiosperms became increasingly prominent through the Tertiary. The diverse: angiosperm-dominated mire floras produced coals that vary significantly in facies and hence in quality. Such contrasts are evident in contemporaneous coals from different paleolatitudes, as well as among, coals of different ages within the Tertiary, as exemplified by selected deposits in the western United. States. The palynofloras of these coals reflect the floristic composition of the plant communities of the ancient mires.

International Journal of Coal Geology↗

India National Gas Hydrate Program Expedition 02 summary of scientific results: Numerical simulation of reservoir response to depressurization

The India National Gas Hydrate Program Expedition 02 (NGHP-02) discovered gas hydrate at high saturation in sand reservoirs at several sites in the deepwater Bay of Bengal. To assess the potential response of those deposits to scientific depressurization experiments, comprehensive geologic models were constructed to enable numerical simulation for two sites. Both sites (NGHP-02-09 and NGHP-02-16) feature thick sequences of thinly-interbedded reservoir and non-reservoir facies at sub-seafloor depths of less than 300 m and sub-sea depths of 2,400 m or more. These settings pose significant challenges to current modeling capabilities. First, the thinly-bedded reservoir architecture complicates the determination of basic reservoir parameters from both log and core data due to measurement resolution issues. Secondly, the fine-scale variation in sediment properties imparts great contrasts in key parameters over very short distances, creating high gradients at multiple scales and varying orientations that necessitate careful design of high-definition simulation grids. Thirdly, the deposits include internal sources of water, as well as a range of complex boundary conditions, including variable permeability within the overlying mud-rich “seals”, that complicate reservoir depressurization. Lastly, because of the unique combination of great water depth and relatively shallow sub-seafloor depth, models designed to maximize the dissociation rate impose large pressure drawdowns on relatively low-strength sediments. This condition renders the proper evaluation and integration of the geomechanical response to hydrate dissociation critical. In this report, we review the history of gas hydrate reservoir simulation, discuss methods for creating geologic input models, and summarize the key findings and implications of the collaborative NGHP-02 numerical simulation effort. Together, the studies confirm the viability of the modeled accumulations for scientific testing and identify key challenges related to the selection of specific test sites and the design of test wells.

Journal of Marine and Petroleum Geology↗

Relative importance of physical and economic factors in Appalachian coalbed gas assessment

In the 1995 National Assessment of Oil and Gas Resources prepared by the U.S. Geological Survey, only 20% of the assessed technically recoverable Appalachian Province coalbed gas resources were economic. Physical and economic variables are examined to explain the disparity between economic and technically recoverable coalbed gas. The Anticline and Syncline plays of the Northern Appalachian Basin, which account for 77% of the assessed technically recoverable coalbed gas, are not economic. Analysis shows marginal reductions in costs or rate of return will not turn these plays into commercial successes. Physical parameters that determine ultimate well recoverability and the rate of gas recovery are primary reasons the Northern Appalachian Basin plays are non-commercial. If the application of new well stimulation technology could offset slow gas desorption rates, Appalachian Province economic gas could increase to more then 70% of the technically recoverable gas. Similarly, if operators are able to develop strategies to selectively drill plays by avoiding dry holes and non-commercial occurrences, the economic fraction of technically recoverable gas could increase to over half.In the 1995 National Assessment of Oil and Gas Resources prepared by the U.S. Geological Survey, only 20% of the assessed technically recoverable Appalachian Province coalbed gas resources were economic. Physical and economic variables are examined to explain the disparity between economic and technically recoverable coalbed gas. The Anticline and Syncline plays of the Northern Appalachian Basin, which account for 77% of the assessed technically recoverable coalbed gas, are not economic. Analysis shows marginal reductions in costs or rate of return will not turn these plays into commercial successes. Physical parameters that determine ultimate well recoverability and the rate of gas recovery are primary reasons the Northern Appalachian Basin plays are non-commercial. If the application of new well stimulation technology could offset slow gas desorption rates, Appalachian Province economic gas could increase to more then 70% of the technically recoverable gas. Similarly, if operators are able to develop strategies to selectively drill plays by avoiding dry holes and non-commercial occurrences, the economic fraction of technically recoverable gas could increase to over half.

International Journal of Coal Geology↗

Prospects for quantifying structure, floristic composition and species richness of tropical forests

Airborne spectral and light detection and ranging (lidar) sensors have been used to quantify biophysical characteristics of tropical forests. Lidar sensors have provided high-resolution data on forest height, canopy topography, volume, and gap size; and provided estimates on number of strata in a forest, successional status of forests, and above-ground biomass. Spectral sensors have provided data on vegetation types, foliar biochemistry content of forest canopies, tree and canopy phenology, and spectral signatures for selected tree species. A number of advances are theoretically possible with individual and combined spectral and lidar sensors for the study of forest structure, floristic composition and species richness. Delineating individual canopies of over-storey trees with small footprint lidar and discrimination of tree architectural types with waveform distributions is possible and would provide scientists with a new method to study tropical forest structure. Combined spectral and lidar data can be used to identify selected tree species and identify the successional status of tropical forest fragments in order to rank forest patches by levels of species richness. It should be possible in the near future to quantify selected patterns of tropical forests at a higher resolution than can currently be undertaken in the field or from space.

International Journal of Remote Sensing↗

Diet overlap and predation between largemouth bass and walleye in Wisconsin lakes using DNA barcoding to improve taxonomic resolution

Over the last decade, the abundance of Largemouth Bass Micropterus salmoides has increased in many northern Wisconsin lakes, causing concern among anglers and biologists regarding the potential for Largemouth Bass to negatively affect populations of Walleye Sander vitreus through predation or competition for prey. Our objectives were to determine whether (1) diet overlap and predation occurred between adult Walleyes and Largemouth Bass in four northern Wisconsin lakes and (2) the use of DNA barcoding to reduce unidentifiable fish in diet samples affected conclusions regarding diet overlap. A single occurrence of Walleye predation was observed in the diets of 945 Largemouth Bass. Moderate to high diet overlap was observed between Largemouth Bass and Walleyes throughout much of the study period. The use of DNA barcoding reduced the amount of unidentified fish in diets to <1% and showed that failure to identify fish or fish parts can affect conclusions regarding diet overlap. Largemouth Bass predation is probably not a primary factor affecting Walleye abundance in the lakes we selected, but observed diet overlap suggests the potential for competition between the two species.

Wisconsin↗

Behavioral state-dependent habitat selection and implications for animal translocations

Post-release monitoring of translocated animals is often used to inform future translocation protocols. Quantifying habitat selection of translocated individuals may help identify features that characterize good settlement habitat and thus inform the choice of future release sites. However, translocated animals often undergo post-release behavioural modification, and their habitat selection may vary depending on the underlying behavioural state. To investigate this, we analysed behavioural state-dependent habitat selection in female greater sage-grouse Centrocercus urophasianus translocated from Wyoming to North Dakota, USA, using Hidden Markov Models combined with Integrated Step Selection Analysis. We segmented individual trajectories into behavioural phases corresponding to an exploratory state, characterized by broad and directed movements, and a restricted state, characterized by short and tortuous movements. Then, we quantified habitat selection in each state while accounting for seasonality and individual reproductive status. While in the exploratory state, sage-grouse exhibited natal habitat preference induction by selecting for high sagebrush cover, which is typical of their natal area in Wyoming but not of the release area in North Dakota. In the restricted state, sage-grouse selected for gentle topography and also adjusted their habitat selection to constraints imposed by seasonality and reproductive needs by selecting for high herbaceous cover during brood rearing. Synthesis and applications . Habitat selection of translocated sage-grouse differed between the post-release exploration and the settlement phase. Features selected after settling, not during exploration, are likely indicative of suitable settlement habitat. Our results suggest that areas characterized by gentle topography and high herbaceous cover are well-suited as release sites for sage-grouse translocated during the summer, especially brood-rearing females, and that sagebrush cover may not be a critical factor in determining the appropriateness of release sites for sage-grouse in North Dakota. Our findings highlight the need to consider behaviour when using habitat selection estimates to inform the choice of future release sites.

North Dakota, Wyoming↗

Integrating seasonal information on nutrients and benthic algal biomass into stream water quality monitoring

Benthic chlorophyll a (BChl a ) and environmental factors that influence algal biomass were measured monthly from February through October in 22 streams from three agricultural regions of the United States. At-site maximum BChl a ranged from 14 to 406 mg/m 2 and generally varied with dissolved inorganic nitrogen (DIN): 8 out of 9 sites with at-site median DIN >0.5 mg/L had maximum BChl a >100 mg/m 2 . BChl a accrued and persisted at levels within 50% of at-site maximum for only one to three months. No dominant seasonal pattern for algal biomass accrual was observed in any region. A linear model with DIN, water surface gradient, and velocity accounted for most of the cross-site variation in maximum chlorophyll a (adjusted R 2 = 0.7), but was no better than a single value of DIN = 0.5 mg/L for distinguishing between low and high-biomass sites. Studies of nutrient enrichment require multiple samples to estimate algal biomass with sufficient precision given the magnitude of temporal variability of algal biomass. An effective strategy for regional stream assessment of nutrient enrichment could be based on a relation between maximum BChl a and DIN based on repeat sampling at sites selected to represent a gradient in nutrients and application of the relation to a larger number of sites with synoptic nutrient information.

Journal of the American Water Resources Associatio↗