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USGS2023

Monitoring Avian Productivity and Survivorship (MAPS) 6-year summary, Naval Outlying Landing Field, Imperial Beach, southwestern San Diego County, California, 2014–20

Executive Summary From 2014 to 2020, a Monitoring Avian Productivity and Survivorship (MAPS) banding station (station) was operated at the Naval Outlying Landing Field (NOLF), Imperial Beach, in southwestern San Diego County, California. The station was established as part of a long-term monitoring program of Neotropical migratory bird populations on NOLF and helps Naval Base Coronado (NOLF is a component) meet the goals and objectives of the Department of Defense Partners in Flight program and the Birds and Migratory Birds Management Strategies of the Naval Base Coronado Integrated Natural Resources Management Plan. The station was established in 2009 and has been in operation during the spring and summer since 2009 except for 2016 when it was not funded. The station was operated by AMEC Earth and Environmental, Inc., from 2009 to 2011, by the U.S. Geological Survey from 2012 to 2015, the San Diego Natural History Museum in 2017, and the U.S. Geological Survey again from 2018 to 2023. This report synthesizes results from 2014 to 2020. A prior report presents summaries and analyses from 2009 to 2013. The banding station at NOLF was operated according to the standard MAPS protocol with some exceptions. Ten mist nets used to capture birds were erected in fixed locations that remained consistent between and within years, with few minor relocations. Nets were open for 6 hours per day, once every 10 days (a netting period) for 13 netting periods starting April 1 each year. Occasionally, poor weather conditions (for example, rain, wind, or excessive heat) prevented net operation or forced nets to be closed early (or, rarely, late). Nets were checked periodically throughout the day and birds were removed, processed (leg bands affixed, measurements recorded), and released. From 2014 to 2020, we had 3,543 captures (including initial captures and recaptures) of a maximum of 3,264 year-unique captures (543±143 year-unique captures [the total number of individual birds captured for the first time each year]). The count of year-unique captures included 2,702 newly banded birds, 258 individuals that were recaptured from previous years, and 304 birds that were released unbanded (218 hummingbirds and 86 other birds that were intentionally released unbanded [game birds, and so forth] or escaped before banding). Individuals of 68 species were captured, 39 of which breed at or in the immediate vicinity of the MAPS banding station. Bird capture rate averaged 43±30 captures per day (corrected to account for variation in effort) for all years (range 7–163 effort-corrected captures per day) and species richness per year averaged 43±4. Bushtit ( Psaltriparus minimus ) was the most abundant species captured, followed by Orange-crowned Warbler ( Leiothlypis celata ), Wilson’s Warbler ( Cardellina pusilla ), House Finch ( Haemorhous mexicanus ), Song Sparrow ( Melospiza melodia ), and Common Yellowthroat ( Geothlypis trichas ). The mean adult sex ratio of all species combined across all years was 54:46 male:female. Adults averaged 73±12 percent of known age captures per year (range 59–94 percent), and juveniles averaged 27±12 percent (range 6–41 percent). Nineteen sensitive species were detected at NOLF (12 captured and 7 observed only). During 2014–20, we captured one State and federally endangered species, Least Bell’s Vireo ( Vireo bellii pusillus ); one federally threatened species, California Gnatcatcher ( Polioptila californica ); one State endangered species, Willow Flycatcher ( Empidonax traillii ); and two State species of concern, Yellow-breasted Chat ( Icteria virens ) and Yellow Warbler ( Setophaga petechia ). One additional State species of concern, Northern Harrier ( Circus hudsonius ), was observed at the MAPS banding station but not captured. Peregrine Falcon ( Falco peregrinus ) and White-tailed Kite ( Elanus leucurus ), California State fully protected species, also were observed at the MAPS banding station. Seven federal bird species of conservation concern—Calliope Hummingbird ( Selasphorus calliope ), Rufous Hummingbird ( Selasphorus rufus ), Allen’s Hummingbird ( Selasphorus sasin ), Nuttall’s Woodpecker ( Dryobates nuttallii ), Wrentit ( Chamaea fasciata ), California Thrasher ( Toxostoma redivivum ), and Lawrence’s Goldfinch ( Spinus lawrencei )—also were captured, and four additional federal bird species of conservation concern—Willet ( Tringa semipalmata ), Western Gull ( Larus occidentalis ), California Gull ( Larus californicus ), and Bullock’s Oriole ( Icterus bullockii )—were observed but not captured. Local population trends varied among species and years. From 2012 to 2019, year-round residents Bushtit, Song Sparrow, and Common Yellowthroat significantly decreased, whereas the migrant Least Bell’s Vireo increased. The total number of captures for all species except Least Bell’s Vireo was lowest in 2017, corresponding to the habitat damage caused by Kuroshio shot hole borer beetle ( Euwallacea kuroshio ) in the Tijuana River Valley. Annual productivity and annual adult survival were calculated for seven breeding species based on criteria used by the Institute for Bird Populations (Least Bell’s Vireo, Bushtit, Wrentit, House Wren [ Troglodytes aedon ], Song Sparrow, Orange-crowned Warbler, and Common Yellowthroat). Productivity was highest for most species in 2010 and 2019, years with high precipitation, and lowest in 2014 and 2018, years with low precipitation. Song Sparrow demonstrated the highest productivity among species and Least Bell’s Vireo had the lowest productivity. Annual adult survival was generally high from 2011 to 2012 and from 2018 to 2019. Bushtit had higher annual survival with lower late winter precipitation. Either temperature or precipitation was associated with productivity for all species except Wrentit, and with survival for all species except Least Bell’s Vireo and Common Yellowthroat. For most species, productivity was positively associated with precipitation, and both productivity and survival were negatively associated with temperature. Other studies have found that higher temperatures led to increased predation by snakes and birds and also increased vector-borne disease transmission, such as West Nile virus. Predicted regional increases in temperature over the next 30 years will likely affect the demographics of these species. The Song Sparrow population increased with higher breeding productivity during the previous year, and the Bushtit population increased with higher annual survival and higher productivity during the previous year. Aside from a possible positive association between survivorship and Common Yellowthroat population growth, productivity and survival rates did not appear to influence population change for other focal species.

California↗

USGS1950

Lead and zinc deposits of the Beetown area, Wisconsin

The Beetown area, in Grant County, Wisconsin, in the Northwestern part of the Upper Mississippi Valley zinc-lead district, lies in the western part of T. 4 N., R. 4 W., and the eastern part of T. 4 N., R. 5 W. The village of Beetown is at about its center. Recent geologic investigations in the area by the U.S. Geological Survey, in cooperation with the Wisconsin Geological and Natural History Survey, indicate that further prospecting for both lead and zinc ore is justified. This brief preliminary paper discusses geologic features of the lead and the zinc deposits. It is one of several areas within the district chosen for detailed geologic study because surface indications and past production suggest that the area may contain undiscovered lead and zinc deposits. This report is based on field work that began in July 1947 and continued at intervals until September 1949.

Wisconsin↗

USGS1950

Bibliography of publications relating to ground water in Connecticut

The United States Geological Survey is currently investigating the ground-water resources of Connecticut in cooperation with the State Water Commission. As part of this cooperative project, in order to summarize the knowledge already gained about ground water in the State, a bibliography of reports dealing with ground water in Connecticut has been prepared. A compilation entitled "Bibliography and index of publications relating to ground water prepared by the Geological Survey and cooperating agencies", by G. A. Waring and O. E. Neinzer, was issued as U.S. Geological Survey Water-Supply Paper 992 in 1947. The following compilation lists all the papers in Water-Supply Paper 992 that refer to Connecticut plus other short reports not included in the letter. The first studies of ground water in Connecticut were begun in 1903 by Professor H. E. Gregory of Yale University under the auspices of the U.S. Geological Survey. The early studies were of the reconnaissance type, covering large sections of the State, and were concerned mainly with the relation of the bedrock geology to the water supply. The results were published in several Water-Supply Papers of the Geological Survey. In 1911 a cooperative agreement for the study of the ground-water resources of Connecticut in which each party shared equally in the expenses was made between the Federal Survey and the Connecticut State Geological and Natural History Survey. As a result more detailed studies in smaller areas were undertaken. Active field work covering more than half the State was continued through 1923 under this arrangement and the results published in eight U.S. Geological Survey Water-Supply Papers. After an eleven year period of inactivity and with the inauguration of the Federal Emergency Relief Commission, detailed studies of ground water in Connecticut were begun again in October 1934 as a project of the Emergency Relief Commission (later the Works Progress Administration). The project was sponsored by the Connecticut State Water Commission, the State Planning Board, and the U.S. Geological Survey. The technical direction of the work was undertaken by the Geological Survey. The project consisted of an inventory and mapping of wells and springs in the State by towns and the recording of weekly observations of water levels in selected wells. The data collected through October 1939 were published in six mimeographed bulletins and one typewritten bulletin by the Works Program Administration. In 1939, when it became necessary to curtail the work being carried on by the Works Progress Administration, cooperation was arranged between the Federal Ecological Survey and the State Water Commission to continue investigations relative to the over-development of ground-water supplies in the New Haven area. From time to time additional funds have been made available to meet growing demands by the State for data on its ground-water supplied and the present cooperative program between the U.S. Geological Survey and the State Water Commission is a continuation of the original arrangement. It is estimated that about 14 per cont of the State has been covered by recent ground-water surveys and in addition some data are available for another 20 per cent of he State.

Connecticut↗

USGS1956

Drilling data in the Montfort, Rewey, Mifflin, Belmont, and Calamine quadrangles, Wisconsin

Sixty-six churn drill holes aggregating 10,351 feet were drilled in the fall of 1955 in the zinc-lead district of southwestern Wisconsin (fig. 1). This drilling was part of a cooperative program of geologic mapping by the U. S. Geological Survey and the Wisconsin Geologic and Natural History Survey. The holes penetrate the Maquoketa, Galena, Decorah, and Platteville formations of Late and Middle Ordovician age in areas of sparse outcrop and subsurface information. They provide basic data for stratigraphic study and for the projection of geologic structures in these areas. Exact location of the holes is shown in figs. 2, 3, 4, 5, and 6. Generalized descriptive logs of the 66 holes were prepared mainly from driller's logs, and from a field study of the drill cuttings by J. E. Carlson. Where delineation of the formations drilled was difficult in the field, the cuttings were examined by binocular microscope.

Wisconsin↗

USGS1980

Channel erosion and sediment transport in Pheasant Branch basin near Middleton, Wisconsin; a preliminary report

The purpose of this 5-year study is to (1) evaluate the sediment transport, streamflow characteristics, and stream-channel morphology, (2) relate the above to land-use practices; and (3) evaluate the effect that changes in land-use practices will have on Pheasant Branch basin near Middleton, Wis. This report presents findings of sediment transport, streamflow characteristics, and stream-channel morphology from the first year of the study and documents historical erosion. The study is being conducted by the U.S. Geological Survey in cooperation with the city of Middleton and the Wisconsin Geological and Natural History Survey. Pheasant Branch, a tributary to Lake Mendota, drains 23.1 square miles of glacial drift. Channel erosion is severe within Middleton, requiring extensive use of erosion-control structures. Occasionally, channel dredging near the mouth and into Lake Mendota is required for boating. Comparison of stream-channel surveys of 1971 and 1977 shows the lowest part of the channel lowered 3 to 4 feet at some sites in the urban reach from U.S. Highway 12 downstream to Century Avenue. Downstream from Century Avenue, channel width increased from about 35 to 48 feet and channel cross-section area increased about 86 percent. A survey of Pheasant Branch in 1971 provided data for quantification of stream-channel changes since that time. Six erosion-control structures previously installed appear to have had some benefit in controlling head cutting in the channel. (USGS).

Wiscoonsin↗

USGS1982

High-resolution seismic-reflection profiles and sidescan-sonar records collected on Block Island Sound by U.S. Geological Survey, R/V ASTERIAS, cruise AST 81-2

Cruise AST 81-2 was conducted aboard the R/V ASTERIAS during September 10-18, 1981, in Block Island Sound by the U.S. Geological Survey. It was funded in part by the Connecticut Geological and Natural History Survey. The purpose of the study was to define and map the geology and shallow structure, to determine the geologic framework and late Tertiary to Holocene history, and to identify and map any potential geologic hazards of Block Island Sound. The survey was conducted using an EG&G Uniboom seismic system and an EDO Western sidescan-sonar system. Seismic signals were band-passed between 400 and 4,000 Hz and were recorded at a quarter-second sweep rate. Sidescan sonographs were collected at a 100-m scan range to each side of the ship track. In all, 702 km of seismic-reflection profiles and 402 km of sidescan-sonar records were collected. Navigation was by Loran-C, and the ship position was recorded at 5-minute intervals. Seismic-reflection profiling is continuous and good in quality. Sidescan-sonar records are varied in quality; coverage was intermittent and eventually terminated owing to difficulties with the recorder. Original records can be seen and studied at the U.S. Geological Survey Data Library at Woods Hole, MA 02543. Microfilm copies of the seismic-reflection profiles and the sidescan sonographs can be purchased only from the National Geophysical and Solar-Terrestrial Data Center, NOAA/EDIS/NGSDC, Code D621, 325 Broadway, Boulder, CO 80303 (telephone 303-497-6338).

Open-File Report↗

USGS1994

Water-resources investigations in Wisconsin

The statewide average precipitation of 38.79 inches for the 1993 water year was 122 percent of the normal annual precipitation of 31.77 inches for water years 1961-90. Average precipitation values ranged from 103 percent of normal in northwestern Wisconsin to 150 percent of normal in southwestern Wisconsin (Pamela Naber Knox, UW-Extension, Geological and Natural History Survey, written commun., 1993). Runoff was variable for rivers throughout the State ranging from 99 percent in northcentral Wisconsin to 278 percent in southwestern Wisconsin. Departure of runoff in the 1993 water year from long-term average runoff is shown in figure 4, along with long-term average runoff for the period 1951-80. Runoff was lowest (99 percent of the average annual runoff from 1936-93) for the Wisconsin River at Rainbow Lake near Lake Tomahawk. Runoff was highest (278 percent of the average annual runoff from 1939-93) for the Pecatonica River at Darlington. The average annual runoff for the 1993 water year was the maximum for the period of record at 33 long-term stations (more than 10 years of record) in the southern half of Wisconsin. A comparison of the annual discharge for the individual water years (1916-93) at the Oconto River near Gillett, Jump River at Sheldon, and Sugar River near Brodhead is shown figure 5, The comparisons of monthly and annual discharges for the 1993 water year to discharge for a 78-year base period at the same three gaging stations are shown in figure 6. Spring runoff from snowmelt and major storms, in the period March through September 1993, caused floods with discharges that equalled or exceeded those with a recurrence interval of 10 years (Krug and others, 1991) at a number of crest-stage gage and gaging stations.

Wisconsin↗

USGS1995

Water-resources investigations in Wisconsin, 1995

The statewide average precipitation of 30.66 inches for the 1994 water year was 96 percent of the normal annual precipitation of 31.79 inches for water years 1961-90. Average precipitation values ranged from 81 percent of normal in southeastern Wisconsin to 103 percent of normal in west-central Wisconsin (Pamela Naber Knox, UW-Extension, Geological and Natural History Survey, written commun., 1994). Runoff was variable for rivers throughout the State ranging from 60 percent in southeast Wisconsin to 142 percent in west-central Wisconsin. Runoff was lowest (60 percent of the average annual runoff from 1972-94) for the Pike River near Racine. Runoff was highest (142 percent of the average annual runoff from 1915-19, 1935-94) for the Trempealeau River at Dodge. Departure of runoff in the 1994 water year as a percent of long-term average runoff in the State are shown in Figure 4.

Wisconsin↗

USGS1997

Water-Resources Investigations in Wisconsin

The statewide average precipitation of 33.37 inches for the 1996 water year was 105 percent of the normal annual precipitation of 31.79 inches for water years 1961-90. Average precipitation values ranged from 77 percent of normal at Trempealeau Dam 6 weather station in west central Wisconsin to 151 percent of normal at Oconto 4 W weather station in northeast Wisconsin (State Climatologist Office, Geological and Natural History Survey, written commun., 1997). Runoff was variable for rivers throughout the State ranging from 64 percent in southwest Wisconsin to 212 percent in east central Wisconsin. Runoff was lowest (64 percent of the average annual runoff from 1935-96) for the Platte River near Rockville and highest (212 percent of the average annual runoff from 1949-69, 1988-96) for the South Branch Rock River at Waupun. Departures of runoff in the 1996 water year as a percent of long-term average runoff in the State are shown in Figure 4. EXPLANATION

Wisconsin↗

USGS1999

Digital mapping techniques '99 -- workshop proceedings

The Digital Mapping Techniques '99 (DMT'99) workshop was attended by 91 technical experts from 42 agencies, universities, and private companies, including representatives from 30 state geological surveys (see Appendix A ). This workshop was similar in nature to the first two meetings, held in June, 1997, in Lawrence, Kansas (Soller, 1997), and in May, 1998, in Champaign, Illinois (Soller, 1998a). This year's meeting was hosted by the Wisconsin Geological and Natural History Survey, from May 19 to 22, 1999, on the University of Wisconsin campus in Madison. As in the previous meetings, the objective was to foster informal discussion and exchange of technical information. When, based on discussions at the workshop, an attendee adopts or modifies a newly learned technique, the workshop clearly has met that objective. Evidence of learning and cooperation among participating agencies continued to be a highlight of the DMT workshops (see example in Soller, 1998b, and various papers in this volume). The meeting's general goal was to help move the state geological surveys and the USGS toward development of more cost-effective, flexible, and useful systems for digital mapping and geographic information systems (GIS) analysis. Through oral and poster presentations and special discussion sessions, emphasis was given to: 1) methods for creating and publishing map products (here, ìpublishingî includes Web-based release); 2) continued development of the National Geologic Map Database; and 3) progress toward building a standard geologic map data model. Especially to support the interest in map preparation and publication, five representatives of the GIS hardware and software vendor community were invited to participate. The three annual DMT workshops were coordinated by the AASG/USGS Data Capture Working Group, which was formed in August, 1996, to support the Association of American State Geologists and the USGS in their effort to build a National Geologic Map Database (see Soller and Berg, this volume, and http://ncgmp.usgs.gov/ngmdbproject/standards/datacapt/datacaptureWG.html ). The Working Group was formed because increased production efficiencies, standardization, and quality of digital map products were needed to help the Database, and the State and Federal geological surveys, provide more high-quality digital maps to the public.

Open-File Report↗

USGS2008

The coral reef of South Moloka'i, Hawai'i— Portrait of a sediment-threatened fringing reef

Moloka‘i, with the most extensive coral reef in the main Hawaiian Islands, is especially sacred to Hina, the Goddess of the Moon. As Hinaalo, she is the Mother of the Hawaiian people; as Hinapuku‘a, she is the Goddess of Fishermen; and in the form Hina‘opuhalako‘a, she is the Goddess who gave birth to coral, coral reefs, and all spiny marine organisms. Interdependence between the reef’s living resources, the people, and their cosmology was the basis for management of Moloka‘i’s coastal waters for over a thousand years. The ancient residents of Moloka‘i built the greatest concentration of fishponds known anywhere, but their mastery of mariculture, something needed now more than ever, was lost after near genocide from exotic Western diseases. Subsequent destruction of the native vegetation for exotic cattle, goats, pigs, sugar cane, and pineapple caused soil erosion and sedimentation on the reef flat. This masterful volume clearly documents that soil washing into the sea is the major threat to the reef today. Abandoned fishponds, choked with sediment, now act as barriers and mud traps, making damage to corals less than it would otherwise would have been. The role of mud and freshwater from land in preventing coral reef growth, clearly articulated in Charles Darwin’s first book, The Structure and Distribution of Coral Reefs, is the major theme of this book. All around the tropics, coral reefs have died from huge increases in terrestrial sedimentation that resulted from destruction of hillside forests for cash-crop agriculture and pastures in the colonial era, especially in Latin America, Asia, and the islands of the Caribbean and Indo-Pacific. It is obvious that one cannot manage the coastal zone as a unit separate from the watersheds that drain into it. Yet there has been surprisingly little comprehensive scientific study of these impacts. In this landmark volume, U.S. Geological Survey researchers and their colleagues have developed and applied a remarkably integrated approach to the reefs of Moloka‘i, combining geology, oceanography, and biology to provide an in-depth understanding of the processes that have made these reefs grow and that now limit them. They have joined old fashioned natural history of marine animals and plants with study of the geological evolution of the island, hydrology, meteorology, and land-use history, to an arsenal of new methods of remote sensing, including aerial photography, laser ranging, infrared thermal mapping, seismic reflection, in-situ instrumentation to measure chemical parameters of water quality, and direct measurements of the physical driving forces affecting them—such as wave energy, currents, sedimentation, and sediment transport. They provide a level of documentation and insight that has never been available for any reef before. A remarkable feature of this book is that it is aimed at the people of Moloka‘i to inform them of what is happening to their reef and what they might do to preserve their vital resources. The scientific data and interpretations are expressed in unusually clear and comprehensible language, free of the professional jargon that makes most technical publications impenetrable to the public that most needs to know about them, yet without loss of scientific rigor. Here readers will see clearly explained the whole path of soil loss, from the impacts of wild pigs and goats at higher elevations, deforestation of the hills for cattle pasture at lower levels, and denudation of low lands for cash crops. The resulting biological impoverishment has bared the soils, which wash away in flash storms, smothering the inshore reefs, whose growth was already limited because they had grown right up to sea level. The data in this book show that the mud doesn’t get far if it is washed into the sea during a big storm with heavy waves. Afterwards this mud keeps getting stirred up by every succeeding storm, spreading and affecting corals over wider areas until it is finally washed out of the system—and that only happens if there is no more new mud washing onto the reef. I saw this myself a few years ago in Pila‘a Bay on Kaua‘i, where a bulldozed hillside of abandoned sugar cane fields had slumped right on top of a coral reef following exceptional rains. Years later, the algae species were zoned in a way that clearly mapped the distribution of nutrients washed into the bay, most likely from fertilizers bound to the eroded soils. That pattern closely mimics, on a small scale, that shown in Moloka‘i in this volume, where the inner reef is covered with algae, zoned by species in a way that points to land-based sources of nutrients, while the outermost reef slope is still coral dominated, and the deep algae seem to indicate deep-water nutrient upwelling. What of the future? The Hawaiian Islands have been exceptionally fortunate to be spared the worst coral heatstroke death from high temperatures, at least to date. So far, the worst global warming impacts have luckily been small in this region, and the small number of people on Moloka‘i has kept population densities, and sewage pollution, low compared to the more developed islands. Nutrients from years of sugar and pineapple fertilization, and the washing of this soil onto the reefs, show clear influences on the pattern of algae on the reef. Even at very low levels of nutrients, well below that which drives algae to smother and kill coral reefs, more algae is present. Soil erosion control is therefore the key to better management of both nutrients and turbidity on Moloka‘i reefs. To that end land management actions mentioned in this book, such as suppressing wild fires and eliminating wild goats and pigs, could be made even more effective if supplemented by active erosion control using plants whose roots bind the soil effectively in place. Through all of these efforts, Hina and the people of Moloka‘i could be happy again!

Hawaii↗

USGS2009

Status Assessment of Laysan and Black-Footed Albatrosses, North Pacific Ocean, 1923-2005

Over the past century, Laysan (Phoebastria immutabilis) and black-footed (Phoebastria nigripes) albatrosses have been subjected to high rates of mortality and disturbance at the breeding colonies and at sea. Populations were greatly reduced and many colonies were extirpated around the turn of the 20th century as a result of feather hunting. Populations were recovering when military occupation of several breeding islands during World War II led to new population declines at these islands and additional colony extirpations. At sea, thousands of Laysan and black-footed albatrosses were killed each year in high-seas driftnet fisheries, especially from 1978 until the fisheries were banned in 1992. Through the 1990s, there was a growing awareness of the large numbers of albatrosses that were being killed in longline fisheries. During the 1990s, other anthropogenic factors, such as predation by non-native mammals and exposure to contaminants, also were documented to reduce productivity or increase mortality. In response to the growing concerns over the impacts of these threats on albatross populations, the U.S. Fish and Wildlife Service contracted with the U.S. Geological Survey to conduct an assessment of Laysan and black-footed albatross populations. This assessment includes a review of the taxonomy, legal status, geographic distribution, natural history, habitat requirements, threats, and monitoring and management activities for these two species. The second part of the assessment is an analysis of population status and trends from 1923 to 2005. Laysan and black-footed albatrosses forage throughout the North Pacific Ocean and nest on tropical and sub-tropical oceanic islands from Mexico to Japan. As of 2005, 21 islands support breeding colonies of one or both species. The core breeding range is the Hawaiian Islands, where greater than 99 percent of the World's Laysan albatrosses and greater than 95 percent of the black-footed albatrosses nest on the small islands and atolls of the Northwestern Hawaiian Islands. These islands are all protected as part of the Papahanaumokuakea Marine National Monument. Albatrosses are long-lived seabirds with deferred maturity, low fecundity, and high rates of adult survival. Their life history characteristics make populations especially vulnerable, to small increases in adult mortality. The primary threats to Laysan and black-footed albatrosses include interactions with commercial fisheries, predation by introduced mammals, reduced reproductive output due to contaminants, nesting habitat loss and degradation due to human development and invasive plant species, and potential loss and degradation of habitat due to climate change and sea-level rise. Incidental mortality (bycatch) in commercial fisheries is the greatest anthropogenic source of mortality (post-fledging) for both species. We found that longline fishing effort prior to the 1980s was greater than previously estimated and a very significant source of mortality. Regulations to minimize and monitor albatross mortality have been enacted in most U.S. and Canadian longline fisheries, but monitoring of bycatch rates and regulations to minimize seabird mortality are extremely limited in the much larger multinational longline fleets. Management to address threats at the breeding colonies is ongoing and includes eradication or control of non-native species, habitat management, and abatement programs to reduce impacts of contaminants. Effective long-term conservation and management of the Laysan and black-footed albatrosses require management and monitoring at the breeding colonies and at sea and continued assessment of population status and trends. We evaluated the status and trends of Laysan and black-footed albatross populations using linear regression, population viability analysis (PVA), and age-structured matrix models. Analyses were predominantly based on nest-count data gathered at French Frigate Shoals, Laysan Island, and Midw

Scientific Investigations Report↗

USGS2002

Simulation of Fish, Mud, and Crystal Lakes and the shallow ground-water system, Dane County, Wisconsin

A new MODFLOW lake package (LAK3) that simulates ground-water/lake interaction was used in simulation of Fish, Mud and Crystal Lakes?three shallow seepage lakes located in northwestern Dane County, Wis. The simulations were done to help determine the cause of increasing lake stages and provide a tool to estimate the effect of pumping water from Fish lake on future lake stages. The ground-water-flow model was developed using a telescopic-mesh refinement of the Dane and southwestern Columbia Counties regional model previously developed by the U.S. Geological Survey and the Wisconsin Geological and Natural History Survey. The parameter estimation model, UCODE, was coupled to the steadystate ground-water model to automate and optimize the calibration procedure. The steady-state model was calibrated to measured ground-water levels, Spring Creek streamflow measured at Lodi, and Fish and Crystal Lake stages. The results of the steady-state model were used as initial conditions in a transient simulation beginning in 1966 and ending in 1998. Recharge based on annual baseflow in Black Earth Creek, runoff based on measured coefficients, and precipitation and evaporation from the lake surfaces, were varied during the transient simulation. Measured Fish Lake stage was matched to simulated stage to calibrate the transient model. Model results suggest that the increase in regional ground-water recharge resulted in increased ground-water flow to the lake, which in turn resulted in increased lake stages. Simulation results of withdrawal of water from Fish Lake at 500 gallons per minute, assuming 1990?98 climatic conditions, indicate that after 1 year of pumping the stage of Fish and Mud Lakes would be reduced more than 1 foot and the stage of Crystal Lake would be reduced by less than 0.2 foot. When pumping is stopped, the lake stages would recover to near pre-pumping levels within about 3 years. When pumping is extended to 5 years, Fish and Mud Lake stage would be reduced by a maximum of 3.8 feet and Crystal Lake stage is reduced a maximum of 0.8 feet. After 4 years of recovery, Fish and Mud Lake stages are within 0.9 foot of prepumping levels and Crystal Lake stage is within 0.7 foot.

Wisconsin↗

USGS2003

Numerical simulation of ground-water flow in La Crosse County, Wisconsin, and into nearby pools of the Mississippi River

This report describes a two-dimensional regional screening model and two associated three-dimensional ground-water flow models that were developed to simulate the ground-water flow systems in La Crosse County, Wisconsin, and Pool 8 of the Mississippi River. Although the geographic extents of the three-dimensional models were slightly different, both were derived from the same geologic interpretation and regional screening model, and their calibrations were performed concurrently. The objectives of the La Crosse County (LCC) model were to assess the effects of recent (1990s) and potential future ground-water withdrawals and to provide a tool suitable to evaluate the effects of proposed water-management programs. The Pool 8 model objectives were to quantify the magnitude and distribution of ground-water flow into the Pool. The Wisconsin Geological and Natural History Survey and the U.S. Geological Survey developed the models cooperatively. The report describes: 1) the conceptual hydrogeologic model; 2) the methods used in simulating flow; 3) model calibration and sensitivity analysis; and 4) model results, such as simulation of predevelopment conditions and location and magnitude of ground-water discharge into Pool 8 of the Mississippi. Three aquifer units underlie the model area: 1) a shallow unconsolidated sand and gravel aquifer; 2) an upper bedrock aquifer, composed of Cambrian and Ordovician sandstone and dolomite; and 3) a lower bedrock aquifer composed of Cambrian sandstone of the Eau Claire Formation and the Mount Simon Formation. A shale layer that is part of the Eau Claire Formation forms a confining unit separating the upper and lower bedrock aquifers. This confining unit is absent in the Black River and parts of the La Crosse and Mississippi River valleys. Precambrian crystalline basement rock forms the lower base of the ground-water flow system. The U.S. Geological Survey ground-water flow model code, MODFLOW, was used to develop the La Crosse County (LCC) and Pool 8 ground-water flow models. Boundary conditions for the MODFLOW model were extracted from an analytic element screening model of the regional flow system surrounding La Crosse County. Model input was obtained from previously published and unpublished geologic and hydrologic data. Pumpages from municipal and high-capacity wells were also simulated. Model calibration included a comparison of modeled and field-measured water levels and field-measured base flows to simulated stream flows. At calibration, most measured water levels compared favorably to model-calculated water levels. Simulated streamflows at two targets were within 3 percent of estimated measured base flows. Mass balance results from the LCC and Pool 8 models indicated that 63 to 74 percent of ground water was from recharge and 19 to 26 percent was from surface-water sources. Ground-water flow out of the model was to rivers and streams (85 to 87 percent) and pumping wells (11 and 13 percent). The model demonstrates the effects of development on ground water in the study area. The maximum simulated water-level decline in the city of La Crosse metropolitan area is 9.3 feet. Simulated stream losses are similar to the amount of ground water pumped by wells. This indicates that ground water withdrawn by La Crosse County wells is water that under predevelopment conditions discharged to streams and lakes. The models provide estimates of the locations and amount of ground-water flow into Pool 8 and the southern portion of Pool 7 of the Mississippi River. Ground-water discharges into all areas of the pools, except along the eastern shore in the vicinity of the city of La Crosse and immediately downgradient from lock and dam 7 and 8. Ground-water flow into the pools is generally greatest around the perimeter with decreasing amounts away from the perimeter. An area of relatively high ground-water discharge extends out towards the center of Pool 7 from the upper reaches of the pool and may

Wisconsin↗

USGS1979

Water-table map of Waukesha County, Wisconsin

A map (scale 1:100,000) was prepared of the water table in Waukesha County in southeastern Wisconsin using water levels from more than 1,700 wells. The work was done as part of a cooperative project between the U.S. Geological Survey, the University of Wisconsin-Extension, Geological and Natural History Survey, and the Southeastern Wisconsin Regional Planning Commission. The map shows the altitude of the water table in increments of 20 feet, with supplemental 10-foot contours. The altitude ranges from less than 670 feet at a point along the east border of the county to more than 1,000 feet above sea level at three points in the central part of the county. (Woodard-USGS)

Wisconsin↗

USGS1998

Hydrogeology and simulation of ground-water flow in the Sandstone Aquifer, northeastern Wisconsin

Municipalities in the lower Fox River Valley in northeastern Wisconsin obtain their water supply from a series of permeable sandstones and carbonates of Cambrian to Ordovician age. Withdrawals from this "sandstone aquifer" have resulted in water levels declining at a rate of more than 2 feet per year. The U.S. Geological Survey, in cooperation with the major water utilities in the Fox Cities area, the East Central Wisconsin Regional Planning Commission and the Wisconsin Geological and Natural History Survey, collected hydrogeological data and constructed a quasithree- dimensional, transient ground-water-flow model for use as a tool in assessing the water resources of the sandstone aquifer. The rocks of the Sinnipee Group and Maquoketa Shale form the Maquoketa-Sinnipee confining unit that separates the sandstone aquifer from the overlying upper aquifer, which consists of unconsolidated deposits and permeable dolomite of Silurian age. The confining unit is present in the eastern part of the study area, but is absent in the western part, where the upper aquifer directly overlies the sandstone aquifer. The ground-water-flow model simulates water levels in the two aquifers and vertical flow across the confining unit. Streams and lakes are simulated in the upper aquifer as head-dependent boundaries where the confining unit is absent and as constant head boundaries where the confining unit is present. The sandstone aquifer has constant heads assigned to the southern boundary, which is far from the lower Fox River Valley and coincident with a ground-water divide. The model was calibrated to predevelopment, 1957, and 1990 water levels, and used to simulate steady-state predevelopment conditions and transient conditions from 1880 to 1990. The trend in simulated water levels over time was similar to trends in measured water levels. Simulated base flow to streams was within the calculated range of base flow at gaged streams. A groundwater divide that separates westerly ground-water flow to the Wolf River from easterly flow to the lower Fox River Valley and Lake Michigan was simulated.

Wisconsin↗

USGS2012

Endangered river fish: factors hindering conservation and restoration

Globally, riverine fish face many anthropogenic threats including riparian and flood plain habitat degradation, altered hydrology, migration barriers, fisheries exploitation, environmental (climate) change, and introduction of invasive species. Collectively, these threats have made riverine fishes some of the most threatened taxa on the planet. Although much effort has been devoted to identifying the threats faced by river fish, there has been less effort devoted to identifying the factors that may hinder our ability to conserve and restore river fish populations and their watersheds. Therefore, we focus our efforts on identifying and discussing 10 general factors (can also be viewed as research and implementation needs) that constrain or hinder effective conservation action for endangered river fish: (1) limited basic natural history information; (2) limited appreciation for the scale/extent of migrations and the level of connectivity needed to sustain populations; (3) limited understanding of fish/river-flow relationships; (4) limited understanding of the seasonal aspects of river fish biology, particularly during winter and/or wet seasons; (5) challenges in predicting the response of river fish and river ecosystems to both environmental change and various restoration or management actions; (6) limited understanding of the ecosystem services provided by river fish; (7) the inherent difficulty in studying river fish; (8) limited understanding of the human dimension of river fish conservation and management; (9) limitations of single species approaches that often fail to address the broader-scale problems; and (10) limited effectiveness of governance structures that address endangered river fish populations and rivers that cross multiple jurisdictions. We suggest that these issues may need to be addressed to help protect, restore, or conserve river fish globally, particularly those that are endangered.

Endangered Species Research↗

USGS2020

Microbiomes from biorepositories? 16S rRNA bacterial amplicon sequencing of archived and contemporary intestinal samples of wild mammals (Eulipotyphla: Soricidae)

Interest in gut microbial community composition has exploded recently as a result of the increasing ability to characterize these organisms and a growing understanding of their role in host fitness. New technologies, such as next generation amplicon (16S rRNA) sequencing, have enabled identification of bacterial communities from samples of diverse origin (e.g., fecal, skin, genital, environmental, etc.). Relatively little work, however, has explored the feasibility of utilizing historical samples (e.g., museum archived samples) of varying age, quality, and preservation type. Because natural history collections span multiple decades, these biorepositories have the potential to provide fundamental historical baselines to measure and better understand biodiversity on a changing planet. Utilizing even a small proportion of museum specimens could provide a means of sampling past microbial communities, allowing for direct comparison to contemporary communities and more complete understanding of dynamic shifts through time. We examined the feasibility of obtaining 16S rRNA amplicon microbiome data from whole gastrointestinal tracts (GIs) of shrews of varying age and preservation method, including 5 freshly collected shrew GIs immediately fixed in liquid nitrogen (LN2), 10 ten-year old shrew GIs frozen at −20°C (whole animal), and 10 shrews of varying ages (4 from 1968, 1 from 1980, 1 from 2001, 1 from 2004, 1 from 2007, 1 from 2011 and 2 from 2013) fixed and stored whole in 70% ethanol. Not surprisingly, results of 16S rDNA amplicon sequencing reveal significantly different bacterial communities between different preservation techniques and age of samples. Ten-year old frozen samples had bacterial communities most similar to freshly collected (LN2) samples, while the bacterial communities of both were significantly different from the 70% ethanol preserved samples of various ages. Amongst those preserved in 70% ethanol, age of samples also influenced bacterial community composition. Additionally, we compare results of OTU based and ASV based analyses. Looking ahead, field collectors and museums should develop and adopt best practices related to frozen preservation to ensure adequate material for future microbiome investigations.

Frontiers in Ecology and Evolution↗