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At least 217 records · Page 12Linked to original sources

Estimating occupancy and abundance using aerial images with imperfect detection

Species distribution and abundance are critical population characteristics for efficient management, conservation, and ecological insight. Point process models are a powerful tool for modelling distribution and abundance, and can incorporate many data types, including count data, presence-absence data, and presence-only data. Aerial photographic images are a natural tool for collecting data to fit point process models, but aerial images do not always capture all animals that are present at a site. Methods for estimating detection probability for aerial surveys usually include collecting auxiliary data to estimate the proportion of time animals are available to be detected. We developed an approach for fitting point process models using an N -mixture model framework to estimate detection probability for aerial occupancy and abundance surveys. Our method uses multiple aerial images taken of animals at the same spatial location to provide temporal replication of sample sites. The intersection of the images provide multiple counts of individuals at different times. We examined this approach using both simulated and real data of sea otters ( Enhydra lutris kenyoni ) in Glacier Bay National Park, southeastern Alaska. Using our proposed methods, we estimated detection probability of sea otters to be 0.76, the same as visual aerial surveys that have been used in the past. Further, simulations demonstrated that our approach is a promising tool for estimating occupancy, abundance, and detection probability from aerial photographic surveys. Our methods can be readily extended to data collected using unmanned aerial vehicles, as technology and regulations permit. The generality of our methods for other aerial surveys depends on how well surveys can be designed to meet the assumptions of N -mixture models.

Methods in Ecology and Evolution

A distributed pipeline for DIDSON data processing

Technological advances in the field of ecology allow data on ecological systems to be collected at high resolution, both temporally and spatially. Devices such as Dual-frequency Identification Sonar (DIDSON) can be deployed in aquatic environments for extended periods and easily generate several terabytes of underwater surveillance data which may need to be processed multiple times. Due to the large amount of data generated and need for flexibility in processing, a distributed pipeline was constructed for DIDSON data making use of the Hadoop ecosystem. The pipeline is capable of ingesting raw DIDSON data, transforming the acoustic data to images, filtering the images, detecting and extracting motion, and generating feature data for machine learning and classification. All of the tasks in the pipeline can be run in parallel and the framework allows for custom processing. Applications of the pipeline include monitoring migration times, determining the presence of a particular species, estimating population size and other fishery management tasks.

Conference Paper

A comparison of consumptive-use estimates derived from the simplified surface energy balance approach and indirect reporting methods

Recent advances in remote-sensing technology and Simplified Surface Energy Balance (SSEB) methods can provide accurate and repeatable estimates of evapotranspiration (ET) when used with satellite observations of irrigated lands. Estimates of ET are generally considered equivalent to consumptive use (CU) because they represent the part of applied irrigation water that is evaporated, transpired, or otherwise not available for immediate reuse. The U.S. Geological Survey compared ET estimates from SSEB methods to CU data collected for 1995 using indirect methods as part of the National Water Use Information Program (NWUIP). Ten-year (2000-2009) average ET estimates from SSEB methods were derived using Moderate Resolution Imaging Spectroradiometer (MODIS) 1-kilometer satellite land surface temperature and gridded weather datasets from the Global Data Assimilation System (GDAS). County-level CU estimates for 1995 were assembled and referenced to 1-kilometer grid cells to synchronize with the SSEB ET estimates. Both datasets were seasonally and spatially weighted to represent the irrigation season (June-September) and those lands that were identified in the county as irrigated. A strong relation (R2 greater than 0.7) was determined between NWUIP CU and SSEB ET data. Regionally, the relation is stronger in arid western states than in humid eastern states, and positive and negative biases are both present at state-level comparisons. SSEB ET estimates can play a major role in monitoring and updating county-based CU estimates by providing a quick and cost-effective method to detect major year-to-year changes at county levels, as well as providing a means to disaggregate county-based ET estimates to sub-county levels. More research is needed to identify the causes for differences in state-based relations.

Scientific Investigations Report

Land-cover change in the central irregular plains, 1973-2000

Spearheaded by the Geographic Analysis and Monitoring Program of the U.S. Geological Survey (USGS) in collaboration with the U.S. Environmental Protection Agency (EPA) and the National Aeronautics and Space Administration (NASA), the Land Cover Trends is a research project focused on understanding the rates, trends, causes, and consequences of contemporary United States land-use and land-cover change. Using the EPA Level III ecoregions as the geographic framework, scientists process geospatial data collected between 1973 and 2000 to characterize ecosystem responses to land-use changes. The 27-year study period was divided into five temporal periods: 1973-1980, 1980-1986, 1986-1992, 1992-2000 and 1973-2000. General land-cover classes for these periods were interpreted from Landsat Multispectral Scanner, Thematic Mapper, and Enhanced Thematic Mapper Plus imagery to categorize land-cover change and evaluate using a modified Anderson Land Use Land Cover Classification System for image interpretation. The rates of land-cover change are estimated using a stratified, random sampling of 10-kilometer (km) by 10-km blocks allocated within each ecoregion. For each sample block, satellite images are used to interpret land-cover change. Additionally, historical aerial photographs from similar timeframes and other ancillary data such as census statistics and published literature are used. The sample block data are then incorporated into statistical analyses to generate an overall change matrix for the ecoregion. These change statistics are applicable for different levels of scale, including total change for the individual sample blocks and change estimates for the entire ecoregion. The results illustrate that there is no single profile of land-cover change but instead point to geographic variability that results from land uses within ecoregions continuously adapting to various factors including environmental, technological, and socioeconomic.

Open-File Report

Random forest classification of multitemporal Landsat 8 spectral data and phenology metrics for land cover mapping in the Sonoran and Mojave Deserts

Geospatial data and tools evolve as new technologies are developed and landscape change occurs over time. As a result, these data may become outdated and inadequate for supporting critical habitat-related work across the international boundary in the Sonoran and Mojave Deserts Bird Conservation Region (BCR 33) due to the area’s complex vegetation communities and the discontinuity in data availability across the United States (US) and Mexico (MX) border. This research aimed to produce the first 30 m continuous land cover map of BCR 33 by prototyping new methods for desert vegetation classification using the Random Forest (RF) machine learning (ML) method. The developed RF classification model utilized multitemporal Landsat 8 Operational Land Imager spectral and vegetation index data from the period of 2013–2020, and phenology metrics tailored to capture the unique growing seasons of desert vegetation. Our RF model achieved an overall classification F-score of 0.80 and an overall accuracy of 91.68%. Our results portrayed the vegetation cover at a much finer resolution than existing land cover maps from the US and MX portions of the study area, allowing for the separation and identification of smaller habitat pockets, including riparian communities, which are critically important for desert wildlife and are often misclassified or nonexistent in current maps. This early prototyping effort serves as a proof of concept for the ML and data fusion methods that will be used to generate the final high-resolution land cover map of the entire BCR 33 region.

Remote Sensing

Transport of Cryptosporidium oocysts in porous media: Role of straining and physicochemical filtration

The transport and filtration behavior of Cryptosporidium parvum oocysts in columns packed with quartz sand was systematically examined under repulsive electrostatic conditions. An increase in solution ionic strength resulted in greater oocyst deposition rates despite theoretical predictions of a significant electrostatic energy barrier to deposition. Relatively high deposition rates obtained with both oocysts and polystyrene latex particles of comparable size at low ionic strength (1 mM) suggest that a physical mechanism may play a key role in oocyst removal. Supporting experiments conducted with latex particles of varying sizes, under very low ionic strength conditions where physicochemical filtration is negligible, clearly indicated that physical straining is an important capture mechanism. The results of this study indicate that irregularity of sand grain shape (verified by SEM imaging) contributes considerably to the straining potential of the porous medium. Hence, both straining and physicochemical filtration are expected to control the removal of C. parvum oocysts in settings typical of riverbank filtration, soil infiltration, and slow sand filtration. Because classic colloid filtration theory does not account for removal by straining, these observations have important implications with respect to predictions of oocyst transport.

Environmental Science & Technology

Establishing the moon as a spectral radiance standard

A new automated observatory dedicated to the radiometry of the moon has been constructed to provide new radiance information for calibration of earth-orbiting imaging instruments, particularly Earth Observing System instruments. Instrumentation includes an imaging photometer with 4.5-in. resolution on a fully digital mount and a full-aperture radiance calibration source. Interference filters within 0.35–0.95 µm correspond to standard stellar magnitude systems, accommodate wavelengths of lunar spectral contrast, and approximate some band-passes of planned earth-orbiting instruments (ASTER, Landsat-7 ETM, MISR, MODIS, and SeaWIFS). The same equipment is used for lunar and stellar observations, with the use of an aperture stop in lunar imaging to comply with Nyquist's theorem and lengthen exposure times to avoid scintillation effects. A typical robotic night run involves observation of about 60 photometric standard stars and the moon; about 10 of the standard stars are observed repeatedly to determine atmospheric extinction, and the moon is observed several times. Observations are to be made on every photometric night during the bright half of the month for at least 4.5 years to adequately cover phase and libration variation. Each lunar image is reduced to absolute exoatmospheric radiance and reprojected to a fixed selenographic grid system. The collection of these images at various liberators and phase angles will be reduced to photometric models for each of the approximately 120 000 points in the lunar grid for each filter. Radiance models of the moon can then be produced for the precise geometry of an orbiting instrument observation. Expected errors are under 1% relative and 2.5% absolute. A second telescope operating from 1.0 to 2.5 µm is planned.

Journal of Atmospheric and Oceanic Technology

Characterizing land surface phenology and exotic annual grasses in dryland ecosystems using Landsat and Sentinel-2 data in harmony

Invasive annual grasses, such as cheatgrass (Bromus tectorum L.), have proliferated in dryland ecosystems of the western United States, promoting increased fire activity and reduced biodiversity that can be detrimental to socio-environmental systems. Monitoring exotic annual grass cover and dynamics over large areas requires the use of remote sensing that can support early detection and rapid response initiatives. However, few studies have leveraged remote sensing technologies and computing frameworks capable of providing rangeland managers with maps of exotic annual grass cover at relatively high spatiotemporal resolutions and near real-time latencies. Here, we developed a system for automated mapping of invasive annual grass (%) cover using in situ observations, harmonized Landsat and Sentinel-2 (HLS) data, maps of biophysical variables, and machine learning techniques. A robust and automated cloud, cloud shadow, water, and snow/ice masking procedure (mean overall accuracy >81%) was implemented using time-series outlier detection and data mining techniques prior to spatiotemporal interpolation of HLS data via regression tree models (r = 0.94; mean absolute error (MAE) = 0.02). Weekly, cloud-free normalized difference vegetation index (NDVI) image composites (2016–2018) were used to construct a suite of spectral and phenological metrics (e.g., start and end of season dates), consistent with information derived from Moderate Resolution Image Spectroradiometer (MODIS) data. These metrics were incorporated into a data mining framework that accurately (r = 0.83; MAE = 11) modeled and mapped exotic annual grass (%) cover throughout dryland ecosystems in the western United States at a native, 30-m spatial resolution. Our results show that inclusion of weekly HLS time-series data and derived indicators improves our ability to map exotic annual grass cover, as compared to distribution models that use MODIS products or monthly, seasonal, or annual HLS composites as primary inputs. This research fills a critical gap in our ability to effectively assess, manage, and monitor drylands by providing a framework that allows for an accurate and timely depiction of land surface phenology and exotic annual grass cover at spatial and temporal resolutions that are meaningful to local resource managers.

California, Idaho, Nevada, Oregon

Evaluation of SWIR crop residue bands for the Landsat Next mission

This research reports the findings of a Landsat Next expert review panel that evaluated the use of narrow shortwave infrared (SWIR) reflectance bands to measure ligno-cellulose absorption features centered near 2100 and 2300 nm, with the objective of measuring and mapping non-photosynthetic vegetation (NPV), crop residue cover, and the adoption of conservation tillage practices within agricultural landscapes. Results could also apply to detection of NPV in pasture, grazing lands, and non-agricultural settings. Currently, there are no satellite data sources that provide narrowband or hyperspectral SWIR imagery at sufficient volume to map NPV at a regional scale. The Landsat Next mission, currently under design and expected to launch in the late 2020’s, provides the opportunity for achieving increased SWIR sampling and spectral resolution with the adoption of new sensor technology. This study employed hyperspectral data collected from 916 agricultural field locations with varying fractional NPV, fractional green vegetation, and surface moisture contents. These spectra were processed to generate narrow bands with centers at 2040, 2100, 2210, 2260, and 2230 nm, at various bandwidths, that were subsequently used to derive 13 NPV spectral indices from each spectrum. For crop residues with minimal green vegetation cover, two-band indices derived from 2210 and 2260 nm bands were top performers for measuring NPV (R 2 = 0.81, RMSE = 0.13) using bandwidths of 30 to 50 nm, and the addition of a third band at 2100 nm increased resistance to atmospheric correction residuals and improved mission continuity with Landsat 8 Operational Land Imager Band 7. For prediction of NPV over a full range of green vegetation cover, the Cellulose Absorption Index, derived from 2040, 2100, and 2210 nm bands, was top performer (R 2 = 0.77, RMSE = 0.17), but required a narrow (≤20 nm) bandwidth at 2040 nm to avoid interference from atmospheric carbon dioxide absorption. In comparison, broadband NPV indices utilizing Landsat 8 bands centered at 1610 and 2200 nm performed poorly in measuring fractional NPV (R 2 = 0.44), with significantly increased interference from green vegetation.

Remote Sensing

Quantifying the visual-sensory landscape qualities that contribute to cultural ecosystem services using social media and LiDAR

Landscapes are increasingly recognized for providing valuable cultural ecosystem services with numer- ous non-material benefits by serving as places of rest, relaxation, and inspiration that ultimately improve overall mental health and physical well-being. Maintaining and enhancing these valuable benefits through targeted management and conservation measures requires understanding the spatial and tem- poral determinants of perceived landscape values. Content contributed through mobile technologies and the web are emerging globally, providing a promising data source for localizing and assessing these land- scape benefits. These georeferenced data offer rich in situ qualitative information through photos and comments that capture valued and special locations across large geographic areas. We present a novel method for mapping and modeling landscape values and perceptions that leverages viewshed analysis of georeferenced social media data. Using a high resolution LiDAR (Light Detection and Ranging) derived digital surface model, we are able to evaluate landscape characteristics associated with the visual- sensory qualities of outdoor recreationalists. Our results show the importance of historical monuments and attractions in addition to specific environmental features which are appreciated by the public. Evaluation of photo-image content highlights the opportunity of including temporally and spatially vari- able visual-sensory qualities in cultural ecosystem services (CES) evaluation like the sights, sounds and smells of wildlife and weather phenomena.

North Carolina

Use of electrical imaging and distributed temperature sensing methods to characterize surface water–groundwater exchange regulating uranium transport at the Hanford 300 Area, Washington

We explored the use of continuous waterborne electrical imaging (CWEI), in conjunction with fiber‐optic distributed temperature sensor (FO‐DTS) monitoring, to improve the conceptual model for uranium transport within the Columbia River corridor at the Hanford 300 Area, Washington. We first inverted resistivity and induced polarization CWEI data sets for distributions of electrical resistivity and polarizability, from which the spatial complexity of the primary hydrogeologic units was reconstructed. Variations in the depth to the interface between the overlying coarse‐grained, high‐permeability Hanford Formation and the underlying finer‐grained, less permeable Ringold Formation, an important contact that limits vertical migration of contaminants, were resolved along ∼3 km of the river corridor centered on the 300 Area. Polarizability images were translated into lithologic images using established relationships between polarizability and surface area normalized to pore volume ( S por ). The FO‐DTS data recorded along 1.5 km of cable with a 1 m spatial resolution and 5 min sampling interval revealed subreaches showing (1) temperature anomalies (relatively warm in winter and cool in summer) and (2) a strong correlation between temperature and river stage (negative in winter and positive in summer), both indicative of reaches of enhanced surface water–groundwater exchange. The FO‐DTS data sets confirm the hydrologic significance of the variability identified in the CWEI and reveal a pattern of highly focused exchange, concentrated at springs where the Hanford Formation is thickest. Our findings illustrate how the combination of CWEI and FO‐DTS technologies can characterize surface water–groundwater exchange in a complex, coupled river‐aquifer system.

Washington

Mapping of the 1973 Mississippi River floods from the Earth Resources Technology Satellite (ERTS)

On March 31, and May 4 and 5, 1973, the first Earth Resources Technology Satellite (ERTS-1) obtained multispectral scanner imagery over the Mississippi River below St. Louis, Missouri. The river was in flood, and the ERTS data provided the first opportunity for regional synoptic mapping of the extent of flooding at the time the imagery was obtained along a 1200 river-mile reach and some of its tributaries. The flood data were compared with imagery collected by ERTS on October 1 and 2, 1972, when the rivers were confined to their normal channels. The specially processed data were analyzed by additive-color techniques, and special enhancements were prepared to aid in interpretation of the data. The extent of flooding was delineated by additive-color, temporal composites of MSS band 7 infrared images. The temporal composites vividly depict, on a single scene, the flooded areas in relation to the normal channel. Color composites of the two near-infrared bands, which usually accentuate surface water, were enlarged to a scale of 1:250,000. Excellent registration was obtained between the image and transparencies of the 1:250,000 topographic maps used as overlays. The resulting image maps were then used as an interim product for preparation of maps showing the extent of flooding at the same scale.

Arkansas, Illinois, Kentucky, Missouri, Tennessee

Supporting users through integrated retrieval, processing, and distribution systems at the Land Processes Distributed Active Archive Center

The US Geological Survey's EROS Data Center (EDC) hosts the Land Processes Distributed Active Archive Center (LP DAAC). The LP DAAC supports NASA's Earth Observing System (EOS), which is a series of polar-orbiting and low inclination satellites for long-term global observations of the land surface, biosphere, solid Earth, atmosphere, and oceans. The EOS Data and Information Systems (EOSDIS) was designed to acquire, archive, manage and distribute Earth observation data to the broadest possible user community. The LP DAAC is one of four DAACs that utilize the EOSDIS Core System (ECS) to manage and archive their data. Since the ECS was originally designed, significant changes have taken place in technology, user expectations, and user requirements. Therefore the LP DAAC has implemented additional systems to meet the evolving needs of scientific users, tailored to an integrated working environment. These systems provide a wide variety of services to improve data access and to enhance data usability through subsampling, reformatting, and reprojection. These systems also support the wide breadth of products that are handled by the LP DAAC. The LP DAAC is the primary archive for the Landsat 7 Enhanced Thematic Mapper Plus (ETM+) data; it is the only facility in the United States that archives, processes, and distributes data from the Advanced Spaceborne Thermal Emission/Reflection Radiometer (ASTER) on NASA's Terra spacecraft; and it is responsible for the archive and distribution of “land products” generated from data acquired by the Moderate Resolution Imaging Spectroradiometer (MODIS) on NASA's Terra and Aqua satellites.

Acta Astronautica

Accuracies achieved in classifying five leading world crop types and their growth stages using optimal Earth Observing-1 Hyperion hyperspectral narrowbands on Google Earth Engine

As the global population increases, we face increasing demand for food and nutrition. Remote sensing can help monitor food availability to assess global food security rapidly and accurately enough to inform decision-making. However, advances in remote sensing technology are still often limited to multispectral broadband sensors. Although these sensors have many applications, they can be limited in studying agricultural crop characteristics such as differentiating crop types and their growth stages with a high degree of accuracy and detail. In contrast, hyperspectral data contain continuous narrowbands that provide data in terms of spectral signatures rather than a few data points along the spectrum, and hence can help advance the study of crop characteristics. To better understand and advance this idea, we conducted a detailed study of five leading world crops (corn, soybean, winter wheat, rice, and cotton) that occupy 75% and 54% of principal crop areas in the United States and the world respectively. The study was conducted in seven agroecological zones of the United States using 99 Earth Observing-1 (EO-1) Hyperion hyperspectral images from 2008–2015 at 30 m resolution. The authors first developed a first-of-its-kind comprehensive Hyperion-derived Hyperspectral Imaging Spectral Library of Agricultural crops (HISA) of these crops in the US based on USDA Cropland Data Layer (CDL) reference data. Principal Component Analysis was used to eliminate redundant bands by using factor loadings to determine which bands most influenced the first few principal components. This resulted in the establishment of 30 optimal hyperspectral narrowbands (OHNBs) for the study of agricultural crops. The rest of the 242 Hyperion HNBs were redundant, uncalibrated, or noisy. Crop types and crop growth stages were classified using linear discriminant analysis (LDA) and support vector machines (SVM) in the Google Earth Engine cloud computing platform using the 30 optimal HNBs (OHNBs). The best overall accuracies were between 75% to 95% in classifying crop types and their growth stages, which were achieved using 15–20 HNBs in the majority of cases. However, in complex cases (e.g., 4 or more crops in a Hyperion image) 25–30 HNBs were required to achieve optimal accuracies. Beyond 25–30 bands, accuracies asymptote. This research makes a significant contribution towards understanding modeling, mapping, and monitoring agricultural crops using data from upcoming hyperspectral satellites, such as NASA’s Surface Biology and Geology mission (formerly HyspIRI mission) and the recently launched HysIS (Indian Hyperspectral Imaging Satellite, 55 bands over 400–950 nm in VNIR and 165 bands over 900–2500 nm in SWIR), and contributions in advancing the building of a novel, first-of-its-kind global hyperspectral imaging spectral-library of agricultural crops (GHISA: www.usgs.gov/WGSC/GHISA).

Remote Sensing

Evaluating the effectiveness of wildlife detection and observation technologies at a solar power tower facility

Solar power towers produce electrical energy from sunlight at an industrial scale. Little is known about the effects of this technology on flying animals and few methods exist for automatically detecting or observing wildlife at solar towers and other tall anthropogenic structures. Smoking objects are sometimes observed co-occurring with reflected, concentrated light (“solar flux”) in the airspace around solar towers, but the identity and origins of such objects can be difficult to determine. In this observational pilot study at the world’s largest solar tower facility, we assessed the efficacy of using radar, surveillance video, and insect trapping to detect and observe animals flying near the towers. During site visits in May and September 2014, we monitored the airspace surrounding towers and observed insects, birds, and bats under a variety of environmental and operational conditions. We detected and broadly differentiated animals or objects moving through the airspace generally using radar and near solar towers using several video imaging methods. Video revealed what appeared to be mostly small insects burning in the solar flux. Also, we occasionally detected birds flying in the solar flux but could not accurately identify birds to species or the types of insects and small objects composing the vast majority of smoking targets. Insect trapping on the ground was somewhat effective at sampling smaller insects around the tower, and presence and abundance of insects in the traps generally trended with radar and video observations. Traps did not tend to sample the larger insects we sometimes observed flying in the solar flux or found dead on the ground beneath the towers. Some of the methods we tested (e.g., video surveillance) could be further assessed and potentially used to automatically detect and observe flying animals in the vicinity of solar towers to advance understanding about their effects on wildlife.

California

Volcano surveillance by ACR silver fox

Recent growth in the business of unmanned air vehicles (UAVs) both in the US and abroad has improved their overall capability, resulting in a reduction in cost, greater reliability and adoption into areas where they had previously not been considered. Uses in coastal and border patrol, forestry and agriculture have recently been evaluated in an effort to expand the observed area and reduce surveillance and reconnaissance costs for information gathering. The scientific community has both contributed and benefited greatly in this development. A larger suite of light-weight miniaturized sensors now exists for a range of applications which in turn has led to an increase in the gathering of information from these autonomous vehicles. In October 2004 the first eruption of Mount St Helens since 1986 caused tremendous interest amoUg people worldwide. Volcanologists at the U.S. Geological Survey rapidly ramped up the level of monitoring using a variety of ground-based sensors deployed in the crater and on the flanks of the volcano using manned helicopters. In order to develop additional unmanned sensing methods that can be used in potentially hazardous and low visibility conditions, a UAV experiment was conducted during the ongoing eruption early in November. The Silver Fox UAV was flown over and inside the crater to perform routine observation and data gathering, thereby demonstrating a technology that could reduce physical risk to scientists and other field operatives. It was demonstrated that UAVs can be flown autonomously at an active volcano and can deliver real time data to a remote location. Although still relatively limited in extent, these initial flights provided information on volcanic activity and thermal conditions within the crater and at the new (2004) lava dome. The flights demonstrated that readily available visual and infrared video sensors mounted in a small and relatively low-cost aerial platform can provide useful data on volcanic phenomena. This was made possible by utilizing GPS and computer-controlled flight direction and stabilization to acquire and track target areas within the Mount St. Helens crater. It was also determined that additional light-weight sensor development will be needed to enable autonomous measurements of volcanic gasses and imaging in poor-weather conditions. Copyright ?? 2005 by the American Institute of Aeronautics and Astronautics, Inc. All rights reserved.

Conference Paper

Diatoms.org: Supporting taxonomists, connecting communities

Consistent identification of diatoms is a prerequisite for studying their ecology, biogeography, and successful application as environmental indicators. However, taxonomic consistency among observers has been difficult to achieve because taxonomic information is scattered across numerous literature sources, presenting challenges to the diatomist. Firstly, literature is often inaccessible because of cost or its location in journals that are not widely circulated. Secondly, taxonomic revisions of diatoms are taking place faster than floras can be updated. Finally, taxonomic information is often contradictory across literature sources. These issues can be addressed by developing a content creation community dedicated to making taxonomic, ecological, and image-based data freely available for diatom researchers. Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology. The content curation community aggregates existing taxonomic information, creates new content, and provides feedback in the form of corrections and notices of literature with nomenclatural changes. The website not only addresses the needs of experienced diatom scientists for consistent identification but is also designed to meet users at their level of expertise, including engaging the lay public in the importance of diatom science. The website now contains over 1000 species pages contributed by over 100 content contributors, from students to established scientists. The project began with the intent to provide accurate information on diatom identification, ecology, and distribution using an approach that incorporates engaging design, user feedback, and advanced data access technology. In retrospect, the project that began as an ‘extended electronic book’ has emerged not only as a means to support taxonomists, but for practitioners to communicate and collaborate, expanding the size of and benefits to the content curation community. In this paper, we outline the development of diatoms.org , document key elements of the project, examine ongoing challenges and consider the unexpected emergent properties, including the value of diatoms.org as a source of data. Ultimately, if the field of diatom taxonomy, ecology, and biodiversity is to be relevant, a new generation of taxonomists needs to be trained and employed using new tools. We propose that diatoms.org is in a key position to serve as a hub of training and continuity for the study of diatom biodiversity and aquatic conditions.

Diatom Research

From understanding to action: Integrating new and old methodologies to manage marine infectious disease

Marine diseases can have far-reaching effects on population, community and ecosystem health; however, our ability to track, predict and manage these diseases has, historically, been poor. As a result, the fields of disease ecology and epidemiology have developed at a slower pace for marine than terrestrial systems [ 1 ]. New methodologies, including genomic tools for diagnostics [ 2 , 3 ], transcriptomic tools for measuring host and pathogen responses to infection (e.g. [ 4 , 5 ]), regional oceanic modelling systems that estimate environmental conditions influencing pathogen dispersal and disease progression [ 6 ], artificial intelligence methods for quantifying pathology from images (e.g. [ 7 ]) and advanced disease modelling techniques [ 8 , 9 ] are precipitating a rapid increase in our understanding of marine pathosystems. In 2016, these efforts led to the first special issue of Philosophical Transactions of the Royal Society B ( Marine diseases, volume 371, issue 1689) focused entirely on marine disease ecology and evolution, and in 2020, the first book, Marine disease ecology, was devoted to this topic [ 10 ]. This special issue, focused on marine disease management , is being published a decade after the first Philosophical Transactions special issue on marine diseases. The shift to a management focus reflects an urgent need for management strategies to address high-impact diseases and the rapid methodological advances that have resulted. The papers included in this issue demonstrate the value of combining classical approaches (e.g. routine disease surveillance, reductionistic pathogen challenge trials, rapid throughput diagnostics) with cutting-edge technologies (e.g. high-resolution oceanographic models, Bayesian models, replicated transcriptomic studies) to identify drivers of disease, quantify impacts and suggest management strategies.

Philosophical Transactions of the Royal Society, S