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USGS2016

Physical, chemical, and biological characteristics of selected headwater streams along the Allegheny Front, Blair County, Pennsylvania, July 2011–September 2013

The Altoona Water Authority (AWA) obtains all of its water supply from headwater streams that drain western Blair County, an area underlain in part by black shale of the Marcellus Formation. Development of the shale-gas reservoirs will require new access roads, stream crossing, drill-pad construction, and pipeline installation, activities that have the potential to alter existing stream channel morphology, increase runoff and sediment supply, alter streamwater chemistry, and affect aquatic habitat. The U.S. Geological Survey, in cooperation with Altoona Water Authority and Blair County Conservation District, investigated the water quality of 12 headwater streams and biotic health of 10 headwater streams. Channel morphology was characterized at 10 of 12 stream sites using 500-foot (minimum) longitudinal profiles, four cross-sections each, and pebble counts. Channel slopes ranged from 0.008 in Poplar Run near Newry to 0.045 in Mill Run. In general, streams draining watersheds of 5 square miles or less and at higher elevation had the steepest slopes. On the basis of the median particle size, determined during pebble counts, the streambed substrate can be characterized as cobble (Mill Run, Bells Gap Run, Tipton Run, and Sink Run), a mix of gravel and cobble (South Poplar Run, Dry Gap Run, Glenwhite Run, Sugar Run, Blair Gap Run), and gravel (Poplar Run, Newry). Daily mean values of gage height were determined, and continuous (30-minute interval) data consisting of specific conductance and water temperature were collected, at four sites; each site showed typical seasonal fluctuations and the effects of precipitation. Streamflow affected discrete water-quality. Dissolved oxygen always increased with increased streamflow. Most cations (including barium and strontium), along with pH, specific conductance, and total dissolved solids, decreased with greater streamflow, reflecting the dilution effect of moderately acidic surface runoff and precipitation on groundwater discharge (base flow) into the stream channels. Concentrations of trace elements varied by constituent and streamflow. On the basis of the results of water-quality analyses for the selected constituents, the water quality in 9 of the 12 streams can be considered fair or attaining with no measured constituent exceeding a U.S. Environmental Protection Agency maximum or secondary contaminant level. Abandoned mine drainage (AMD) affects Glenwhite Run, Blair Gap Run, and Sugar Run. For Sugar Run, the AMD is reflected in the elevated iron concentration (greater than 300 micrograms per liter). Manganese concentrations greater than 50 micrograms per liter were measured in Glenwhite Run, Sugar Run, and Blair Gap Run. A mixing curve based upon chloride/bromide ratios for two end points—precipitation and deicing salts—indicate that deicing salt is migrating to the streams. A similar curve representative of late-emerging flowback water from Marcellus gas wells indicated that the surface-water samples had not been influenced by such brines. On the basis of the concentration of major ions, the streams in the study area generally had mixed cation and anion compositions. Calcium is the dominant cation in one stream. Carbonate and bicarbonate are the dominant anions for two streams, and sulfate is dominant in three streams. The remaining six streams do not have a dominant ion. Biotic health was characterized at 10 of 12 stream sites; the two sites excluded were established late in the study period (May 2013) for refinement of water quality in the headwaters of Poplar Run and the location of Marcellus Formation gas wells. On the basis of the Maryland Index of Biotic Integrity (MdIBI) for fish assemblages, 8 of 10 streams can be considered in fair health. Tipton Run had the highest MdIBI score (3.75) and the greatest number of native species. South Poplar Run had the lowest MdIBI score (1.75); pollution tolerant blacknose dace was dominant. On the basis of the Pennsylvania Department of Environmental Protection macroinvertebrate index of biotic integrity, 9 of 10 streams were characterized as attaining, with scores as high as 88.9 at Tipton Run. Only Sugar Run was characterized as impaired, with a score of 40.4.

Pennsylvania↗

USGS2009

Quality of Water from Domestic Wells in Principal Aquifers of the United States, 1991-2004

As part of the National Water-Quality Assessment Program of the U.S. Geological Survey (USGS), water samples were collected during 1991-2004 from domestic wells (private wells used for household drinking water) for analysis of drinking-water contaminants, where contaminants are considered, as defined by the Safe Drinking Water Act, to be all substances in water. Physical properties and the concentrations of major ions, trace elements, nutrients, radon, and organic compounds (pesticides and volatile organic compounds) were measured in as many as 2,167 wells; fecal indicator bacteria and radionuclides also were measured in some wells. The wells were located within major hydrogeologic settings of 30 regionally extensive aquifers used for water supply in the United States. One sample was collected from each well prior to any in-home treatment. Concentrations were compared to water-quality benchmarks for human health, either U.S. Environmental Protection Agency (USEPA) Maximum Contaminant Levels (MCLs) for public water supplies or USGS Health-Based Screening Levels (HBSLs). No individual contaminant was present in concentrations greater than available health benchmarks in more than 8 percent of the sampled wells. Collectively, however, about 23 percent of wells had at least 1 contaminant present at concentrations greater than an MCL or HBSL, based on analysis of samples from 1,389 wells in which most contaminants were measured. Radon, nitrate, several trace elements, fluoride, gross alpha- and beta-particle radioactivity, and fecal indicator bacteria were found most frequently (in one or more percent of wells) at concentrations greater than benchmarks and, thus, are of potential concern for human health. Radon concentrations were greater than the lower of two proposed MCLs (300 picocuries per liter or pCi/L) in about 65 percent of the wells and greater than the higher proposed MCL (4,000 pCi/L) in about 4 percent of wells. Nitrate, arsenic, manganese, strontium, and gross alpha-particle radioactivity (uncorrected) each were present at levels greater than MCLs or HBSLs in samples from about 5 to 7 percent of the wells; boron, fluoride, uranium, and gross beta-particle radioactivity were present at levels greater than MCLs or HBSLs in about 1 to 2 percent of the wells. Total coliform and Escherichia coli bacteria were detected in about 34 and 8 percent, respectively, of sampled wells. Thus, with the exception of nitrate and fecal indicator bacteria, the contaminants that were present in the sampled wells most frequently at concentrations greater than human-health benchmarks were naturally occurring. Anthropogenic organic compounds were frequently detected at low concentrations, using typical analytical detection limits of 0.001 to 0.1 micrograms per liter, but were seldom present at concentrations greater than MCLs or HBSLs. The most frequently detected compounds included the pesticide atrazine, its degradate deethylatrazine, and the volatile organic compounds chloroform, methyl tert-butyl ether, perchloroethene, and dichlorofluoromethane. Only 7 of 168 organic compounds were present in samples at concentrations greater than MCLs or HBSLs, each in less than 1 percent of wells. These were diazinon, dibromochloroprane, dinoseb, dieldrin, ethylene dibromide, perchloroethene, and trichloroethene. Overall, concentrations of any organic compound greater than MCLs or HBSLs were present in 0.8 percent of wells, and concentrations of any organic compound greater than one-tenth of MCLs or HBSLs were present in about 3 percent of wells. Several other properties and contaminants were measured at values or concentrations outside of recommended ranges for drinking water for aesthetic quality (for example, taste or odor) or other non-health reasons. About 16 percent of the sampled wells had pH values less than (14.4 percent) or greater than (1.9 percent) the USEPA recommended range of 6.5 to 8.5. Total dissolved solids were greater than th

Scientific Investigations Report↗

USGS1996

Small watershed studies: Analytical approaches for understanding ecosystem response to environmental change

Biogeochemical studies in small watersheds provide an analytical approach to understand how ecosystems respond to natural climatic variations and human-induced environmental change. Small watersheds, usually less than 5 km2, are small enough to permit characterization and understanding of ecosystem processes within relatively simple, homogeneous biological and physical settings; yet they are large enough to incorporate more complex processes and element cycles than can be studied at plot scales. Watersheds comprise discrete hydrochemical environments allowing quantification of hydrologic, element, and energy budgets. Element budgets, or mass balances, can be quantified as the difference between the mass of a solute that enters a watershed in wet and dry deposition and leaves a watershed in streamflow. Element budgets are primary tools used to investigate biogeochemical processes. Monitoring various aspects of element budgets to assess ecosystem health and stability is analogous to measuring the pulse or blood chemistry of a patient. Monitoring streamwater chemistry, basic climate, soil, and biotic variables provide a means to integrate complex biogeochemical processes and evaluate trends in water quality. Small watershed studies provide a scientific basis to develop predictive models of watershed function. Major emphases of small watershed studies include investigation of hydrologic and chemical responses to natural climate variation, anthropogenic stressors, and alternate forest-management practices. The nature and significance of biogeochemical research in small watersheds is reviewed by Moldan and Cerny (1994). The U.S. Geological Survey, U.S. Department of Agriculture Forest Service, and other federal agencies support several long-term small watershed studies to provide insight into a variety of ecosystem processes. Long-term records are essential to distinguish trends resulting from natural climatic variations or other stressors. The following sites, with noted periods of records, are examples of intensively studied forested watersheds in eastern USA supported by federal agencies: ■ Coweeta Hydrologic Laboratory, North Carolina, (1939-present), Swank and Crossley (1988). ■ Hubbard Brook Experimental Forest, New Hampshire, (1956-present), Bormann and Likens (1979). ■ Sleepers River Research Watershed, Vermont, (1958-present), Shanley et al. (1995). ■ Walker Branch Watershed, Tennessee, (1967-present), Johnson and Van Hook (1989). ■ Catoctin Mountains Research Site, Maryland, (1982-present), Rice and Bricker (1995). ■ Catskill Stream Network, New York, (1983- present), Murdoch and Stoddard (1992). ■ Panola Mountain Research Watershed, Georgia, (1985-present), Huntington et al. (1993). Small watershed studies also provide essential baseline information for understanding variations in water quality and element cycling in "pristine" ecosystems that can be used as benchmarks to evaluate anthropogenic impacts and alternate watershed management practices. This paper provides examples of how analytical tools developed through watershed research provide insight into ecosystem processes and can contribute to the management of watershed resources.

Conference Paper↗

USGS2025

Stressor-driven changes in freshwater biological indicators inform spatial management strategies using expert knowledge, observational data, and hierarchical models

Stream ecosystems face continuous pressures from multiple anthropogenic stressors that reshape biological communities and impact ecosystem health and services. Managers can encounter challenges in stewarding ecosystems threatened by multiple stressors, in part because most multiple stressor studies are experimental and, while valuable, offer limited management relevance in targeting these stressors on the landscape. Recent advances in causal inference coupled with large biomonitoring data sets could further understanding of observational stressor-response relationships, aiding management. In this study, we use bioassessment data in the Chesapeake Bay watershed in the mid-Atlantic region of the United States to identify how water quality and physical habitat stressors influence key benthic macroinvertebrate response metrics, considering hierarchical relationships using Bayesian networks. Results suggest water temperature and specific conductivity were prevalent stressors in a mountainous region (northern Appalachians), whereas in an agriculturally dominated region (southern Appalachians) physical habitat alterations were the predominant stressor. In mixed-land use regions (Piedmont & Coastal Plains), specific conductivity was a key stressor, but habitat heterogeneity was important for macroinvertebrate metrics. To illustrate how these stressor-response relationships can be used to guide management decisions, we applied the resist-accept-direct (RAD) framework to develop a portfolio of management options based on predicted changes in macroinvertebrate metrics in response to physical habitat and water quality stressors. For example, accepting changes in areas with co-occurring stressors may be the most feasible option, whereas directing changes through stream restoration or water quality improvements may be effective in areas with single stressor groups. By leveraging observational bioassessment data and causal inference to identify key stressor-response relationships, this research supports decision making by building a simple, strategic management portfolio.

Delaware, Maryland, New York, Pennsylvania, Virgin↗

USGS2021

Synthesis of data and studies relating to Delta Smelt biology in the San Francisco Estuary, emphasizing water year 2017

In the San Francisco Estuary (SFE), the effects of freshwater flow on the aquatic ecosystem have been studied extensively over the years and remains a contentious management issue. It is especially contentious with regards to the Delta Smelt (Hypomesus transpacificus), a species endemic to the SFE that has been listed as threatened under the Federal Endangered Species Act and endangered by the State of California. Early studies of Delta Smelt distribution within the SFE suggested that Delta Smelt habitat is determined largely by freshwater flow; however, the exact mechanisms and processes producing such benefits remained unclear. In the summer of 2017, the Flow Alteration Management, Analysis, and Synthesis Team (FLOAT-MAST) was established to analyze, synthesize, and summarize the data collected from the various flow-related monitoring and special studies occurring in 2017(see Table Intro 4). This report will focus on the 2017 summer-fall status of Delta Smelt and its habitat following a record wet year. There has been a long-term decline in the abundance of Delta Smelt associated with a decline in other pelagic fishes. Investigators concluded that the decline has likely been caused by the interactive effects of several causes, including changes in both physical and biotic habitats, many of which are tied to amount and timing of freshwater flow. For this report, we formulated a number of basic predictions about the likely effects of high flows in 2017 on Delta Smelt and their habitat (Table 3). We use a qualitative weight of evidence approach to evaluate whether these predictions were supported by available data. Data sources included a variety of long-term monitoring surveys conducted by Interagency Ecological Program (IEP) agencies, as well as model outputs. Delta Smelt population, health, and life history metrics rarely responded as predicted. Water temperature appears to have a stronger effect on Delta Smelt growth rate and some metrics of life history diversity than outflow or X2 position. Other life history diversity attributes varied but did not appear to be driven by outflow or temperature. Health status was difficult to interpret. Low prevalence of lesions and improved nutritional condition during the drought was contradicted by declining overall population levels. Because of the sparse catches of Delta Smelt in the post-POD years, we consider the data insufficient to reach firm conclusions about the predictions concerning range and distribution of Delta Smelt, especially in the fall. The prediction of high survival was not supported. The 2017 Delta Smelt year class began with poor recruitment in spring of 2017 and below average survival for spring to summer and summer to fall. Thus, low production and low survival led to low abundance of all life stages. During the fall to winter period survival improved, yet the resulting adults were low in number. Foraging success of the fish captured, as measured by stomach fullness, was high for juveniles and adults in 2017 relative to recent years associated with the higher densities of common zooplankton prey that occurred in 2017.

California↗

USGS2009

Water-Quality and Biological Assessment of the Iowa River and Tributaries Within and Contiguous to the Meskwaki Settlement of the Sac and Fox Tribe of the Mississippi in Iowa, 2006-07

In cooperation with the Sac and Fox Tribe of the Mississippi in Iowa (Meskwaki Nation), the U.S. Geological Survey conducted a 2-year baseline assessment of the chemical and biological quality of streams within the Meskwaki Settlement in central Iowa. The Meskwaki Nation is a federally recognized tribe that wishes to establish water-quality standards to safeguard the integrity of surface waters and aquatic biota within the settlement for the health and welfare of the tribal community. The settlement is drained by the Iowa River and four tributaries (Onion, Cattail, Raven, and Bennett Creeks). Water-quality samples were collected at three sites on the Iowa River, two sites on Onion Creek, and one site each on Cattail, Raven, and Bennett Creeks from April 2006 through July 2007. Biological and habitat assessments were conducted at all three sites on the Iowa River and the downstream-most site on Onion Creek from June through August 2007. Analysis of physical properties, major ions, nutrients, trace compounds, bacteria, and total suspended solids in water, and trace metals and organic compounds in streambed sediment provided information about the effects of anthropogenic (human related) activities on the water quality of settlement streams. Analysis of biological samples collected during the summer of 2007, including fish community, benthic macroinvertebrates, and periphyton samples, as well as physical habitat characteristics, provided information on the effects of water quality on the condition of the aquatic environment. The majority of surface water sampled within the settlement was predominately a calcium bicarbonate type. Nitrates (nitrate plus nitrite as nitrogen) exceeded the U.S. Environmental Protection Agency's (USEPA) primary drinking-water Maximum Contaminant Level of 10 ug/L in 19 of 36 samples from sites on the Iowa River and Raven and Bennett Creeks but not in samples from Onion and Cattail Creeks. None of the samples analyzed for pesticides, trace metals, wastewater, or fuel contaminants were found to exceed drinking-water regulations for the USEPA or State of Iowa targeted constituents. Bacteria densities for Escherichia coli (E. coli) ranged from less than 10 to more than 600,000 colony-forming units per 100 milliliters of water and were largest following intense rainfall runoff. The largest densities were recorded in samples collected from the tributaries, most notably from Cattail Creek downstream from the tribal headquarters area and Onion Creek downstream from the sewage lagoons. Arsenic and nickel concentrations in bottom sediment from Onion Creek exceeded the USEPA threshold effects level in a composite sample collected during the habitat assessment in July 2007. Suspended-sediment concentration was estimated in terms of total suspended solids. Overall, Onion and Bennett Creeks were the least turbid, whereas the ephemeral Cattail Creek had the most turbid samples. Aquatic-community data were collected at four sites on the Meskwaki Settlement during the summer of 2007 to provide a baseline biological assessment of stream conditions. This assessment was based on sampling of the fish, benthic macroinvertebrate, and periphyton communities along with physical habitat characteristics. Individual biological metrics were derived from the data collected during the community surveys. These metrics were used to calculate Indexes of Biological Integrity (IBIs). The calculated values from the IBIs provided a numerical value that was used to provide an assessment of the biological condition at each biological sampling site. The fish community samples indicated that all of the sampling sites would be considered in fair condition, with one exception being a collection site on the Iowa River at Highway 49 near Tama, Iowa, which was classified in poor condition. The benthic macroinvertebrate IBI indicated a classification of good for three of the four biological sampling sites, with the Iowa River near Montour, Iowa,

Scientific Investigations Report↗

USGS2012

Macroinvertebrate community change associated with the severity of streamflow alteration

Natural streamflows play a critical role in stream ecosystems, yet quantitative relations between streamflow alteration and stream health have been elusive. One reason for this difficulty is that neither streamflow alteration nor ecological responses are measured relative to their natural expectations. We assessed macroinvertebrate community condition in 25 mountain streams representing a large gradient of streamflow alteration, which we quantified as the departure of observed flows from natural expectations. Observed flows were obtained from US Geological Survey streamgaging stations and discharge records from dams and diversion structures. During low-flow conditions in September, samples of macroinvertebrate communities were collected at each site, in addition to measures of physical habitat, water chemistry and organic matter. In general, streamflows were artificially high during summer and artificially low throughout the rest of the year. Biological condition, as measured by richness of sensitive taxa (Ephemeroptera, Plecoptera and Trichoptera) and taxonomic completeness (O/E), was strongly and negatively related to the severity of depleted flows in winter. Analyses of macroinvertebrate traits suggest that taxa losses may have been caused by thermal modification associated with streamflow alteration. Our study yielded quantitative relations between the severity of streamflow alteration and the degree of biological impairment and suggests that water management that reduces streamflows during winter months is likely to have negative effects on downstream benthic communities in Utah mountain streams.

Utah, Wyoming↗

USGS2012

Estimating the benefits of land imagery in environmental applications: a case study in nonpoint source pollution of groundwater

Moderate-resolution land imagery (MRLI) is crucial to a more complete assessment of the cumulative, landscape-level effect of agricultural land use and land cover on environmental quality. If this improved assessment yields a net social benefit, then that benefit reflects the value of information (VOI) from MRLI. Environmental quality and the capacity to provide ecosystem services evolve because of human actions, changing natural conditions, and their interaction with natural physical processes. The human actions, in turn, are constrained and redirected by many institutions and regulations such as agricultural, energy, and environmental policies. We present a general framework for bringing together sociologic, biologic, physical, hydrologic, and geologic processes at meaningful scales to interpret environmental implications of MRLI applications. We set out a specific application using MRLI observations to identify crop planting patterns and thus estimate surface management activities that influence groundwater resources over a regional landscape. We tailor the application to the characteristics of nonpoint source groundwater pollution hazards in Iowa to illustrate a general framework in a land use-hydrologic-economic system. In the example, MRLI VOI derives from reducing the risk of both losses to agricultural production and damage to human health and other consequences of contaminated groundwater.

Book chapter↗

USGS2011

Physical, chemical, and mineralogical data from surficial deposits, groundwater levels, and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada

This report presents data and describes the methods used to determine the physical attributes, as well as the chemical and mineralogical composition of surficial deposits; groundwater levels; and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada. The results support studies that examine (1) the interaction between groundwater and the ground surface, and the transport of solutes through the unsaturated zone; (2) the potential for the accumulation of metals and metalloids in surface crusts; (3) emission of dust from metal-rich salt crust; and (4) the effects of metal-rich dusts on human and ecosystem health. The evaporation of shallow (<3 to 4 m) groundwater in saline, arid environments commonly results in the accumulation of salt in the subsurface and (or) the formation of salt crusts at the ground surface. Ground-surface characteristics such as hardness, electrical conductivity, and mineralogy depend on the types and forms of these salt crusts. In the study area, salt crusts range from hard and bedded to soft and loose (Reynolds and others, 2009). Depending on various factors such as the depth and composition of groundwater and sediment characteristics of the unsaturated zone, salt crusts may accumulate relatively high contents of trace elements. Soft, loose salt crusts are highly vulnerable to wind erosion and transport. These vulnerable crusts, which may contain high contents of potentially toxic trace elements, can travel as atmospheric dust and affect human and ecosystem health at local to regional scales.

Nevada;California;Arizona↗

USGS1979

Chemical, physical, and radiological quality of selected public water supplies in Florida, November 1977-February 1978

Virtually all treated public water supplies sampled in Florida meet the National Interim Primary and Proposed Secondary Drinking Water Regulations. These findings are based on a water-quality reconnaissance of 129 treated public supplies throughout the State during the period November 1977 through February 1978. While primary drinking water regulation exceedences were infrequent, lead, selenium, and gross alpha radioactivity in a very few water supplies were above established maximum contaminant levels. Additionally, the secondary drinking water regulation parameters--dissolved solids , chloride, sulfate, iron, color, and pH--were occasionally detected in excess of the proposed Federal regulations. The secondary regulations, however, pertain mainly to the aesthetic quality of drinking water and not directly to public health aspects. (Woodard-USGS)

Water-Resources Investigations Report↗

USGS1994

Physical, chemical, and biological data for detailed study of irrigation drainage in the Klamath Basin, California and Oregon, 1990-92

Physical, chemical, and biological data were collected between 1990 and 1992 as part of a detailed study by the U.S. Department of Interior of the effects of irrigation drainage on aquatic resources in the Klamath Basin of California and Oregon. Most of the sites for data collection were in and around the upper and lower sump of Tule Lake, in the Tule Lake National Wildlife Refuge, and along major drains in Lower Klamath National Wildlife Refuge. The physical and chemical data consist of particle-size determinations and concentrations of carbon, mercury, arsenic, chlorophenoxy acid, and organochlorine, organophosphate, and carbamate pesticides in bottom sediment; and concentrations of organophosphate, carbamate, and pyrethroid pesticides, major and trace inorganic constituents, nitrogen, phosphorus, and organic carbon in water. Continuous dissolved oxygen, pH, specific conduc- tance, and temperature data from selected sites in 1991 and 1992 are presented in graphical form to summarize the diel water-quality conditions. The biological data consists of concentrations of inorganic constituents and organochlorine pesticides in tissue, invertebrate and fish population surveys, fish health surveys, frog call surveys, egg shell thickness of avian eggs, and in situ and static toxicity bioassay data collected in 1991 and 1992 using aquatic bacteria, plants, invertebrates, fish, and bird species as test organisms.

Open-File Report↗

USGS2004

Total mercury and methylmercury in fish fillets, water, and bed sediments from selected streams in the Delaware River basin, New Jersey, New York, and Pennsylvania, 1998-2001

Within the Delaware River Basin, fish-tissue samples were analyzed for total mercury (tHg). Water and bed-sediment samples were analyzed for tHg and methylmercury (MeHg), and methylation efficiencies were calculated. This study was part of a National Mercury Pilot Program conducted by the U.S. Geological Survey (USGS). The Delaware River Basin was chosen because it is part of the USGS National Water-Quality Assessment Program that integrates physical, chemical, and biological sampling efforts to determine status and trends in surface-water and ground-water resources. Of the 35 sites in the study, 31 were sampled for fish. The species sampled at these sites include smallmouth bass (Micropterus dolomieu), the target species, and where smallmouth bass could not be collected, brown trout (Salmo trutta), chain pickerel (Esox niger), largemouth bass (Micropterus salmoides), and rock bass (Ambloplites rupestris). There were a total of 32 fish samples; 7 of these exceeded the 0.3 microgram per gram wet-weight mercury (Hg) concentration set for human health by the U.S. Environmental Protection Agency and 27 of these exceeded the U.S. Fish and Wildlife Service criteria of 0.1 microgram per gram wet weight for the protection of fish-eating birds and wildlife. Basinwide analysis of Hg in fish, water, and bed sediment showed tHg concentration in fillets correlated positively with population density, urban land cover, and impervious land surface. Negative correlations included wetland land cover, septic density, elevation, and latitude. Smallmouth bass from the urban sites had a higher median concentration of tHg than fish from agricultural, low intensity-agricultural, or forested sites. Concentrations of tHg and MeHg in water were higher in samples from the more urbanized areas of the basin and were positively correlated with urbanization and negatively correlated with forested land cover. Methylation efficiency of water was negatively correlated with urbanization. Bed-sediment patterns were similar to those observed in water. Concentrations of tHg were higher in samples from the urbanized areas. In the more forested areas, MeHg concentrations were higher than in other land-use areas. Concentrations of tHg in bed sediment were positively correlated with urbanization factors (population, urban land cover, and impervious land surface) and negatively correlated with forested land cover and elevation. Forested land cover and latitude were positively correlated with concentrations of MeHg. The methylation efficiency was higher in samples from the forested areas and was negatively correlated with urbanization. Analyses within land-use groups showed that tHg concentrations in fish fillets from the urban sites were positively correlated with forested land cover and wetland cover. Urbanization factors within the agricultural group were positively correlated with tHg in fish; concentrations of tHg in fish from sites in the low intensity-agricultural group were negatively correlated with urbanization factors. Within the agricultural land-use group, tHg concentrations in water were negatively correlated with septic density, and MeHg concentrations were negatively correlated with elevation. In the forested and low intensity-agricultural groups, MeHg in water was negatively correlated with forested and agricultural land cover. Methylation efficiency in water also was negatively correlated with forested land cover but positively correlated with agricultural land cover. Bed-sediment concentrations of tHg in the forested and low-agricultural groups were positively correlated with agricultural land cover and negatively correlated with forested land cover. Concentrations of MeHg in bed sediment were positively correlated with septic density and drainage area and negatively correlated with forested land cover. Methylation efficiency was negatively correlated with population density, agricultural land cover, and sulfate concentrations in water. An urbanization effect was observed in all three media—fish, water, and bed sediment. Different factors, basinwide and within land-use groups, showed a complex relation. Additional sampling within these land-use groups could help characterize interrelations of Hg in the environment to fish in the Delaware River Basin.

New Jersey, New York, Pennsylvania↗

USGS2025

Science needs for determining the effects of climate change on harmful algal blooms in the southeastern United States

The Southeastern United States has many lakes, streams, and reservoirs that serve as important drinking water sources with recreational, agricultural, and ecological uses. However, harmful algal blooms (HABs) are becoming more common in these waters, causing health issues for humans and animals. HABs have been listed as a contaminant of emerging concern, and the magnitude, frequency, and duration of HABs appear to be increasing at the global scale. While it is well known that nutrients stimulate algae growth, it is not clear how climate change and other parameters stimulate the development of toxin production by HABs. The scientific literature describes parameters, such as storm occurrence, temperature, dissolved metals, erosion of soils, increasing length of growing season, discharge, and hydroperiod, that may affect algae growth and toxin production. Climate and hydrologic models address many of the physical and environmental parameters that influence HABs, but no climate models directly address HABs. This report compiles information from the existing literature pertaining to HABs and the modeling and forecasting of HABS. This compilation is done through the incorporation of climate change models. HAB research that involves climate change will require multiple disciplines that bring together ecologists, hydrologists, climatologists, engineers, economists, and new technology. Resource managers could use geographic data about the occurrence and distribution of HABs to develop models that identify waterbodies more vulnerable to HAB events. Development of such models will require teams capable of integrating biological, chemical, and physical factors. Model development will require additional research that can resolve anthropogenic and climate-related environmental factors to identify trends in freshwater HABs. The complexity and interconnectedness of the parameters that influence HAB occurrences will make model development challenging and require rigorous regional calibration.

Open-File Report↗

USGS2011

Measurement and modeling of unsaturated hydraulic conductivity

The unsaturated zone plays an extremely important hydrologic role that influences water quality and quantity, ecosystem function and health, the connection between atmospheric and terrestrial processes, nutrient cycling, soil development, and natural hazards such as flooding and landslides. Unsaturated hydraulic conductivity is one of the main properties considered to govern flow; however it is very difficult to measure accurately. Knowledge of the highly nonlinear relationship between unsaturated hydraulic conductivity (K) and volumetric water content () is required for widely-used models of water flow and solute transport processes in the unsaturated zone. Measurement of unsaturated hydraulic conductivity of sediments is costly and time consuming, therefore use of models that estimate this property from more easily measured bulk-physical properties is common. In hydrologic studies, calculations based on property-transfer models informed by hydraulic property databases are often used in lieu of measured data from the site of interest. Reliance on database-informed predicted values with the use of neural networks has become increasingly common. Hydraulic properties predicted using databases may be adequate in some applications, but not others. This chapter will discuss, by way of examples, various techniques used to measure and model hydraulic conductivity as a function of water content, K(). The parameters that describe the K() curve obtained by different methods are used directly in Richards’ equation-based numerical models, which have some degree of sensitivity to those parameters. This chapter will explore the complications of using laboratory measured or estimated properties for field scale investigations to shed light on how adequately the processes are represented. Additionally, some more recent concepts for representing unsaturated-zone flow processes will be discussed.

Book chapter↗

USGS2015

Nutrient attenuation in rivers and streams, Puget Sound Basin, Washington

Nutrients such as nitrogen and phosphorus are important for aquatic ecosystem health. Excessive amounts of nutrients, however, can make aquatic ecosystems harmful for biota because enhanced growth and decay cycles of aquatic algae can reduce dissolved oxygen in the water. In Puget Sound marine waters, low dissolved oxygen concentrations are observed in a number of marine nearshore areas, and nutrients have been identified as a major stressor to the local ecosystem. Delivery of nutrients from major rivers in the Puget Sound Basin to the marine environment can be large. Therefore, it is important to identify factors related to how nutrients are retained (attenuated) within streams and rivers in the Puget Sound Basin. Physical, chemical, and biological factors related to nutrient attenuation were identified through a review of related scientific literature. Numerous empirical modeling approaches for estimating nutrient attenuation in streams and rivers also were compiled, and a subset of these models was applied to the Puget Sound Basin. In particular, models based on the physical characteristics of a river reach (RivR-N model) and on the physical and biological features of a river reach (v f model) were used and compared for the 17 major rivers draining to the Puget Sound. Data on the relative amount of instream attenuation (the fraction of nutrient input removed per kilometer of stream reach) showed some common and general themes. Firstly, headwater reaches throughout the Puget Sound Basin tend to be better than the main stems of the major rivers at attenuating nitrate and orthophosphorus (ortho-P). Secondly, rivers are more efficient at attenuating nitrate than ortho-P, probably because of the close relation between phosphorus and suspended sediment, which was not captured fully in the models. Thirdly, when comparing the RivR-N and v f models for nitrate, physical characteristics of the channel may be more effective predictors of relative nitrate attenuation for main stem reaches, whereas biological factors may be more effective predictors in headwater reaches. These results are explained in terms of four primary factors of attenuation: sinuosity, channel slope, specific discharge, and uptake velocity (v f ) of the reach. A simple scoring procedure based on these four factors showed that reaches where attenuation scores were high had higher relative attenuation of nutrients from the RivR-N and v f models. This attenuation "scorecard" can be used to quickly assess the potential for a given reach to attenuate nutrients. Seasonal relative attenuation at three case studies was greater in summer months (July through September) and much lower and almost constant from January through June. An analysis of relative attenuation across a range of nutrient concentrations showed that, at some point, relative instream attenuation is minimized. For nitrate, relative attenuation reached a minimum value greater than 3 milligrams of nitrogen per liter (mg N/L) during low flow and 1 mg N/L during high flow. For orthophosphate, minimum relative attenuation was observed at about 0.1 milligram of phosphorus per liter (mg P/L) for both low- and high-flow conditions. Generally, the temporal dynamics of nutrient attenuation are dependent on the travel time through a given reach, the proportion of flow in contact with the sediment, and the amount of biological activity. Improved understanding of nutrient attenuation in Puget Sound Basin will benefit from the compilation of more detailed data for specific discharge, channel slope, and channel sinuosity in Puget Sound streams and rivers. Additionally, field studies examining upstream-downstream changes in nutrient load and field-based measurements of v f are needed. From a management perspective, preservation and improvement of instream nutrient attenuation should focus on increasing the travel time through a reach and contact time of water sediment (reactive) surfaces and lowering nutrient concentrations (and loads) to avoid saturation of instream attenuation and increase attenuation efficiency. These goals can be reached by maintaining and restoring channel-flood plain connectivity, maintaining and restoring healthy riparian zones along streams, managing point and nonpoint nutrient loads to streams and rivers, and restoring channel features that promote attenuation such as the addition of woody debris and maintaining pool-riffle morphologies. Many of these management approaches are already being undertaken during projects aimed to restore quality salmon habitat. Therefore, there is a dual benefit to these projects that also may lead to enhanced potential for nitrogen and phosphorus attenuation.

Washington↗

USGS2012

Threats and stressors to the health of the ecosystems of Lakes Mead and Mohave: Chapter 6 in A synthesis of aquatic science for management of Lakes Mead and Mohave

Ecosystem impacts from visitor activities or natural environmental change are important concerns in all units of the National Park system. Possible impacts to aquatic ecosystems at Lake Mead National Recreation Area (LMNRA) are of particular concern because of the designation of Lakes Mead and Mohave as critical habitat for the federally listed endangered razorback sucker (Xyrauchen texanus), the significance of the sport fishery, and the regional importance of its habitats to more than 90 documented species of waterbirds. Potential threats to shoreline habitats are of concern not only for their ecosystem values but also for maintaining the recreational setting. Many areas adjacent to the shorelines of Lakes Mead and Mohave are designated wilderness areas. For purposes of this document, stressors are any chemical, biological, or physical agent that has a detrimental effect on aquatic ecosystems at the organism, population, or community level. Human-made stressors at Lakes Mead and Mohave include direct effects of recreation on the lakes, like boating and fishing, as well as indirect effects of activities away from the lakes, such as growing population and increasing urbanization. Common natural environmental stressors include extended changes in climate (precipitation or temperature), or the erosion, transport, and loading of chemical constituents in rocks and sediments to aquatic environments. Human activity also can exacerbate natural stressors in a variety of ways.

Circular↗

USGS2003

Pallid sturgeon in the Lower Mississippi Region: Hematology and genome information

This project (Project 1448-43270-2M-002) has been coordinated through the Natchitoches National Fish Hatchery (NNFH) and the U.S. Geological Survey’s National Wetlands Research Center (NWRC). From November 2001 to April 2002, over 280 sturgeon of the genus Scaphirhynchus (including pallid sturgeon, shovelnose, and their hybrids) were sampled from the outflow channel of the Old River Control Structure Complex (ORCC) in Concordia Parish, La. In the overall project, several datasets were collected (see Appendix), including species identification by using microsatellites and morphometric characters, food habits, physical anomalies, information on blood cells, and pathologic evidence of iridovirus – the first indication in the lower Mississippi population of pallid sturgeon. In this study, data on blood cells were obtained from the sturgeon collected monthly from approximately 20 different animals at each sampling time. This report presents preliminary information on differential blood cell identifications in sturgeon, data on comparative genomic DNA content and DNA degradation, and summaries and interpretations of data collected in light of available scientific literature addressing blood parameters of fish and sturgeon, in particular. Results obtained from collection and examination of blood and body fluids are often essential in establishing the health of fish (Blaxhall, 1972; Fange, 1992). Blood cells and sperm cells can be obtained nondestructively from fishes, even from small specimens that weigh less than 100 g (Stoskopf, 1992a). For flow cytometry assays, whereby cells are analyzed individually in a fluid stream, less than 1 :L of blood is needed. Examinations of blood by microscopy and flow cytometry were performed at NWRC in assisting in the efforts directed at recovery of the pallid sturgeon population in the Lower Mississippi River Basin.

Open-File Report↗

USGS2002

Preliminary United States-Mexico border watershed analysis, twin cities area of Nogales, Arizona and Nogales, Sonora

The United States - Mexico border area faces the challenge of integrating aspects of its binational physical boundaries to form a unified or, at least, compatible natural resource management plan. Specified geospatial components such as stream drainages, mineral occurrences, vegetation, wildlife, and land-use can be analyzed in terms of their overlapping impacts upon one another. Watersheds have been utilized as a basic unit in resource analysis because they contain components that are interrelated and can be viewed as a single interactive ecological system. In developing and analyzing critical regional natural resource databases, the Environmental Protection Agency (EPA) and other federal and non-governmental agencies have adopted a ?watershed by watershed? approach to dealing with such complicated issues as ecosystem health, natural resource use, urban growth, and pollutant transport within hydrologic systems. These watersheds can facilitate the delineation of both large scale and locally important hydrologic systems and urban management parameters necessary for sustainable, diversified land-use. The twin border cities area of Nogales, Sonora and Nogales, Arizona, provide the ideal setting to demonstrate the utility and application of a complete, cross-border, geographic information systems (GIS) based, watershed analysis in the characterization of a wide range of natural resource as well as urban features and their interactions. In addition to the delineation of a unified, cross-border watershed, the database contains sewer/water line locations and status, well locations, geology, hydrology, topography, soils, geomorphology, and vegetation data, as well as remotely sensed imagery. This report is preliminary and part of an ongoing project to develop a GIS database that will be widely accessible to the general public, researchers, and the local land management community with a broad range of application and utility.

Arizona, Sonora↗