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USGS2011

Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada

Executive Summary: This project was designed to document habitat conditions and populations of native and non-native fish within the 8-kilometer Condor Canyon section of Meadow Valley Wash, Nevada, with an emphasis on Big Spring spinedace (Lepidomeda mollispinis pratensis). Other native fish present were speckled dace (Rhinichthys osculus) and desert sucker (Catostomus clarki). Big Spring spinedace were known to exist only within this drainage and were known to have been extirpated from a portion of their former habitat located downstream of Condor Canyon. Because of this extirpation and the limited distribution of Big Spring spinedace, the U.S. Fish and Wildlife Service listed this species as threatened under the Endangered Species Act in 1985. Prior to our effort, little was known about Big Spring spinedace populations or life histories and habitat associations. In 2008, personnel from the U.S. Geological Survey's Columbia River Research Laboratory began surveys of Meadow Valley Wash in Condor Canyon. Habitat surveys characterized numerous variables within 13 reaches, thermologgers were deployed at 9 locations to record water temperatures, and fish populations were surveyed at 22 individual sites. Additionally, fish were tagged with Passive Integrated Transponder (PIT) tags, which allowed movement and growth information to be collected on individual fish. The movements of tagged fish were monitored with a combination of recapture events and stationary in-stream antennas, which detected tagged fish. Meadow Valley Wash within Condor Canyon was divided by a 12-meter (m) waterfall known as Delmue Falls. About 6,100 m of stream were surveyed downstream of the falls and about 2,200 m of stream were surveyed upstream of the falls. Although about three-quarters of the surveyed stream length was downstream of Delmue Falls, the highest densities and abundance of native fish were upstream of the falls. Big Spring spinedace and desert sucker populations were highest near the upper end of Condor Canyon, where a tributary known as Kill Wash, and several springs, contribute flow and moderate high and low water temperature. Kill Wash and the area around its confluence with Meadow Valley Wash appeared important for spawning of all three native species. Detections of PIT-tagged fish indicated that there were substantial movements to this area during the spring. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. Our surveys included about 700 m of Meadow Valley Wash upstream of Kill Wash. A small falls about 2 m high was about 560 m upstream of Kill Wash. This falls is likely a barrier to upstream fish movement at most flows. Populations of all three native species were found upstream of this small falls. Age-0 fish of all three species were present, indicating successful spawning. The maximum upstream extent of native fish within Meadow Valley Wash was not determined. A population of non-native rainbow trout (Oncorhynchus mykiss) was found within the 2,000 m of stream immediately downstream of Delmue Falls. Non-native crayfish were very common both upstream and downstream of Delmue Falls. We were not able to quantify crayfish populations, but they compose a significant portion of the biomass of aquatic species in Condor Canyon. There were some distinctive habitat features that may have favored native fish upstream of Delmue Falls. Upstream of the falls, water temperatures were moderated by inputs from springs, turbidity was lower, pool habitat was more prevalent, substrate heterogeneity was higher, and there was less fine sediment than

Open-File Report↗

USGS2016

Mercury concentrations in water and mercury and selenium concentrations in fish from Brownlee Reservoir and selected sites in the Boise and Snake Rivers, Idaho and Oregon, 2013–15

Mercury (Hg) analyses were conducted on samples of sport fish and water collected from selected sampling sites in Brownlee Reservoir and the Boise and Snake Rivers to meet National Pollution Discharge and Elimination System (NPDES) permit requirements for the City of Boise, Idaho, between 2013 and 2015. City of Boise personnel collected water samples from six sites between October and November 2013 and 2015, with one site sampled in 2014. Total Hg concentrations in unfiltered water samples ranged from 0.48 to 8.8 nanograms per liter (ng/L), with the highest value in Brownlee Reservoir in 2013. All Hg concentrations in water samples were less than the U.S. Environmental Protection Agency (USEPA) Hg chronic aquatic life criterion of 12 ng/L. The USEPA recommended a water-quality criterion of 0.30 milligrams per kilogram (mg/kg) methylmercury (MeHg) expressed as a fish-tissue residue value (wet-weight MeHg in fish tissue). The Idaho Department of Environmental Quality adopted the USEPA’s fish-tissue criterion and established a reasonable potential to exceed (RPTE) threshold 20 percent lower than the criterion or greater than 0.24 mg/kg Hg based on an average concentration of 10 fish from a receiving waterbody. NPDES permitted discharge to waters with fish having Hg concentrations exceeding 0.24 mg/kg are said to have a reasonable potential to exceed the water-quality criterion and thus are subject to additional permit obligations, such as requirements for increased monitoring and the development of a Hg minimization plan. The Idaho Fish Consumption Advisory Program (IFCAP) issues fish advisories to protect general and sensitive populations of fish consumers and has developed an action level of 0.22 mg/kg Hg in fish tissue. Fish consumption advisories are water body- and species-specific and are used to advise allowable fish consumption from specific water bodies. The geometric mean Hg concentration of 10 fish of a single species collected from a single water body (lake or stream) in Idaho is compared to the action level to determine if a fish consumption advisory should be issued. The U.S. Geological Survey collected and analyzed individual fillets of mountain whitefish ( Prosopium williamsoni ), rainbow trout ( Oncorhynchus mykiss ), smallmouth bass ( Micropterus dolomieu ), and channel catfish ( Ictalurus punctatus ) for Hg. The 2013 average Hg concentration for small mouth bass (0.32 mg/kg) collected at Brownlee Reservoir and for channel catfish (0.33 mg/kg) collected at the Boise River mouth, exceeded the Idaho water quality criterion (>0.3 mg/kg), the Hg RPTE threshold (>0.24 mg/kg), and the IFCAP action level (>0.22 mg/kg). Average Hg concentrations in fish collected in 2014 or 2015 did not exceed evaluation criteria for any of the species assessed. Selenium (Se) analysis was conducted on one composite fish tissue sample per site to assess general concentrations and to provide information for future risk assessments. Composite concentrations of Se in fish tissue collected between 2013 and 2015 ranged from 0.07 and 0.49 mg/kg wet weight with the highest concentration collected from smallmouth bass from the Snake River near Murphy, and the lowest from mountain whitefish from the Boise River at Eckert Road.

Idaho↗

USGS2026

Unveiling a legacy of fish introductions to mountain lakes using historical records and eDNA surveys in a National Park

Across the western United States, introductions of non-native fish into historically fishless mountain lakes have impacted native biota. Understanding the impacts of fish introductions is essential for conservation in Olympic National Park, a Biosphere Reserve. We reconstructed fish plantings using records dating back to 1930, followed by environmental DNA (eDNA) surveys to estimate the current distribution of fish and amphibians in 117 remote mountain lakes. We used Bayesian multiscale occupancy models to determine how lake attributes and planting history related to fish and amphibian occupancy. The most frequently detected species were Brook Trout, Rainbow Trout, Cascades Frog, and Northwestern Salamander. eDNA sampling revealed 52 lakes with amphibians only, 45 with fish and amphibians, 14 with fish only, and 6 unoccupied. Of the 53 lakes with planting records, 38 had fish eDNA detected. Fish eDNA was also detected in 21 lakes lacking planting records, which could reflect incomplete records, unauthorized plantings, and false positive detections. Of the three species planted, Cutthroat Trout had the highest failure rate and did not become established in 23 of 28 historically planted lakes. In a subset of 9 lakes sampled for up to 7 years, those with known fish and amphibian presence showed consistent eDNA detections over time. The number of times a lake was stocked was the best predictor of occupancy for Brook and Rainbow trout, while higher occupancy for Brook Trout was also associated with lower elevations, lower solar radiation, and larger lake area. We did not observe widespread negative associations between amphibian occupancy and fish presence, although there was a negative relationship between fish presence and Rough-skinned Newt and Long-toed Salamander occupancy. Cascades Frog occupancy showed no relationship to fish presence or lake traits. Our results suggest mechanisms of fish persistence over time and highlight areas where native amphibians are impacted by introduced fish. These results can guide management options like targeted fish removals that benefit native fauna while still supporting recreational fishing. More broadly, our work demonstrates the value of combining historical records with contemporary surveys and the utility of eDNA for broad-scale surveys of species distribution in remote wilderness areas.

Washington↗

USGS2015

Demersal fish distribution and habitat use within and near Baltimore and Norfolk Canyons, U.S. Middle Atlantic Slope

Numerous submarine canyons along the United States middle Atlantic continental margin support enhanced productivity, diverse and unique habitats, active fisheries, and are vulnerable to various anthropogenic disturbances. During two cruises (15 Aug–2 Oct 2012 and 30 Apr–27 May 2013), Baltimore and Norfolk canyons and nearby areas (including two cold seeps) were intensively surveyed to determine demersal fish distributions and habitat associations. Overall, 34 ROV dives (234–1612 m) resulted in 295 h of bottom video observations and numerous collections. These data were supplemented by 40, 30-min bottom trawl samples. Fish observations were assigned to five general habitat designations: 1) sand-mud (flat), 2) sloping sand-mud with burrows, 3) low profile gravel, rock, boulder, 4) high profile, canyon walls, rocks or ridges, and 5) seep-mixed hard and soft substrata, the later subdivided into seven habitats based on amounts of dead mussel and rock cover. The influence of corals, sponges and live mussels (seeps only) on fish distributions was also investigated. Both canyon areas supported abundant and diverse fish communities and exhibited a wide range of habitats, including extensive areas of deep-sea corals and sponges and two nearby methane seeps (380–430 m, 1455–1610 m). All methods combined yielded a total of 123 species of fishes, 12 of which are either new records for this region or have new range data. Depth was a major factor that separated the fish faunas into two zones with a boundary around 1400 m. Fishes defining the deeper zone included Lycodes sp.,Dicrolene introniger, Gaidropsaurus ensis, Hydrolagus affinis, Antimora rostrata, andAldrovandia sp. Fishes in the deep zone did not exhibit strong habitat affinities, despite the presence of a quite rugged, extensive methane seep. We propose that habitat specificity decreases with increasing depth. Fishes in the shallower zone, characterized by Laemonema sp., Phycis chesteri, Nezumia bairdii, Brosme brosme, and Helicolenus dactylopterus, exhibited a variety of habitat use patterns. In general, fish assemblages in the soft substrata areas (dominated by P. chesteri, N. bairdii, Glyptocephalus cynoglossus, Lophius americanus, Merluccius albidus) were different from those in more complex habitats (dominated by Laemonema spp., Hoplostethus spp., B. brosme,Benthocometes robustus, L. americanus, Dysommina rugosa). Although, when present, the dense coral and sponge cover did not statistically affect general fish assemblage patterns in hard bottom habitats, these sessile organisms markedly increased habitat complexity, and some fish species exhibited close association with them. Fish species compositions in the two canyons were not substantially different from the surrounding slopes. However, the diversity of habitats within both the canyons and seeps exerted an important influence on assemblage structure. At least for some species (e.g., B. brosme) canyon and seep environments may be a refuge from intensive bottom fishing activities. We frequently observed evidence of commercial and recreational fishing activity (lost gear on bottom and fishing boats in the area) throughout the canyons and some resulting habitat damage. Conservation measures for the unique and more vulnerable areas (seep and coral habitats) have recently been approved.

Baltimore Canyon, Norfolk Canyon↗

USGS2016

Spatial and temporal patterns of mercury concentrations in freshwater fish across the Western United States and Canada

Methylmercury contamination of fish is a global threat to environmental health. Mercury (Hg) monitoring programs are valuable for generating data that can be compiled for spatially broad syntheses to identify emergent ecosystem properties that influence fish Hg bioaccumulation. Fish total Hg (THg) concentrations were evaluated across the Western United States (US) and Canada, a region defined by extreme gradients in habitat structure and water management. A database was compiled with THg concentrations in 96,310 fish that comprised 206 species from 4262 locations, and used to evaluate the spatial distribution of fish THg across the region and effects of species, foraging guilds, habitats, and ecoregions. Areas of elevated THg exposure were identified by developing a relativized estimate of fish mercury concentrations at a watershed scale that accounted for the variability associated with fish species, fish size, and site effects. THg concentrations in fish muscle ranged between 0.001 and 28.4 (μg/g wet weight (ww)) with a geometric mean of 0.17. Overall, 30% of individual fish samples and 17% of means by location exceeded the 0.30 μg/g ww US EPA fish tissue criterion. Fish THg concentrations differed among habitat types, with riverine habitats consistently higher than lacustrine habitats. Importantly, fish THg concentrations were not correlated with sediment THg concentrations at a watershed scale, but were weakly correlated with sediment MeHg concentrations, suggesting that factors influencing MeHg production may be more important than inorganic Hg loading for determining fish MeHg exposure. There was large heterogeneity in fish THg concentrations across the landscape; THg concentrations were generally higher in semi-arid and arid regions such as the Great Basin and Desert Southwest, than in temperate forests. Results suggest that fish mercury exposure is widespread throughout Western US and Canada, and that species, habitat type, and region play an important role in influencing ecological risk of mercury in aquatic ecosystems.

Science of the Total Environment↗

USGS1948

Turbidity as a factor in the decline of Great Lakes fishes with special reference to Lake Erie

Fish live and thrive in water with turbidities that range above 400 p.p.m. and average 200 p.p.m. The waters of the Great Lakes usually are clear except in Lake Erie where the turbidities of the inshore areas averaged 37 p.p.m.; the turbidities of the offshore waters averaged less. Lake Erie waters were no clearer 50 years ago than they are now. In fact, the turbidity values are less now than they were in the earlier years; the annual average of the inshore waters dropped from 44 p.p.m. before 1930 to 32 p.p.m. in 1930 and later, and the April-May values decreased from 72 p.p.m. to 46 p.p.m. Any general decline in the Lake Erie fishes cannot be attributed to increased turbidities. Furthermore, these turbidities averaged well below 100 p.p.m. and, therefore, were too low to affect fishes adversely. Turbidity in the open waters of Lake Erie is primarily the result of wave action induced by winds. River discharge is a minor factor even in the western end of the lake. Other probable factors are plankton, the eastward movement of the water mass, currents, seiches, and possibly bacteria. Wave action is undoubtedly the dominant agency in soil erosion along the shores of all of the Great Lakes. No evidence exists that fluctuations in the abundance of zooplankton, the basic food of fishes, and of the fishes themselves are positively correlated in Lake Erie or that the plankton crop in this lake is ever in short supply. On the contrary, all available evidence shows that Lake Erie is comparatively rich in plankton and that the western end in spite of its turbidity is richer than the eastern. Some factor other than turbidity dominates the basic productivity of western Lake Erie. With respect to turbidity Lake Erie has not become less suitable for fishes. This conclusion also receives support from the study of the fishes themselves. It was demonstrated that the growth of the western Lake Erie fishes compared very favorably with that of fishes in the other Great Lakes or similar waters. It was shown further that the known occurrence of relatively strong year classes in this lake was not consistently associated with low turbidities and conversely that the known low turbidities of the Lake Erie waters were not always accompanied by large year classes. Also, contrary to the “turbidity theory,” certain clean-water varieties, such as the walleye, have increased tremendously in recent years in Lake Erie, whereas the supposedly turbid-water forms, such as the sauger, have decreased in abundance. Reference was made to Doan's work, wherein he attempted to show correlation between turbidity and abundance for several species of Lake Erie fish but failed to do so except for the sauger where he reported a positive correlation. With respect to the productivity of fishes Lake Erie ranks first among the Great Lakes, and the western end in spite of its greater turbidity surpasses the eastern. As judged by certain accepted standards of water suitability, Lake Erie ranks high, and the western end again surpasses the eastern. Finally, it was pointed out that fishes which inhabit the clear waters of the Great Lakes declined as well as those which live in the more turbid waters and that turbidity, therefore, cannot be a factor in the depletion of all Great Lakes fishes. Furthermore, the reduction in abundance repeatedly has been associated with increased fishing intensity. All of the evidence indicates, then, that soil erosion on farms and the turbidity of the water were not major factors, if operative at all, in the decline of Great Lakes fishes and that they did not make Lake Erie unsuitable for fish life.

Transactions of the American Fisheries Society↗

USGS2022

Understanding the impacts of surface-groundwater conditions on stream fishes under altered baseflow conditions

Persistence of aquatic fauna depends on the conditions and connectivity of surface water and groundwater. In light of altered baseflows and both current and future predicted increases in stream temperatures, it is important to assess current thermal conditions, examine thermal responses of aquatic fauna, and evaluate water-management practices. Our study objectives were to determine (1) how changes in baseflow levels in the Kiamichi River influence hyporheic exchange, which correspondingly influences temperature at the reach scale; (2) temperature tolerances of stream fishes as a means for predicting how habitat complexity influences stream-fish populations; and (3) assess how dam releases influence the downstream temperature and dissolved oxygen regime during the low-flow period. We quantified hyporheic exchange at four reaches and, as expected, found higher groundwater exchange via transient storage occurred at the upstream sites. The net groundwater flux estimation was negative for the majority of reaches indicating that surface water is lost to groundwater during summer (i.e., losing), baseflow conditions. We determined critical thermal maximum (CTMax) for 17 stream fishes and thermal tolerances ranged 32-38°C. We determined the average thermal tolerance for two habitat fish guilds to calculate changes in thermal stress due to hypothetical reservoir release scenarios. We developed a process-based Water Quality Analysis Simulation Program model to predict downstream temperature conditions over 74-km of river in response to reservoir releases that corresponded to discharges of 0.00 (control), 0.34, 0.59, 0.76, 1.13, and 1.50 m3/s. Based on the dissolved oxygen conditions observed in 2015 and 2017 and biological oxygen demand sampling results, reservoir releases did not directly reduce dissolved oxygen concentrations in the Kiamichi River (though dissolved oxygen concentrations are limited to current water-release strategies by the managing agency). We simulated three scenarios using three water-release temperatures: 27.64°C, 26.00°C and 24.07°C that corresponded to average reservoir temperatures at gate locations on the dam. We compared the predicted temperature time series with CTMax of two fish-habitat guilds to quantify the cumulative time when stream fishes experienced severe thermal stress downstream from Sardis Reservoir. According to our simulations, reservoir releases would be capable of regulating downstream water temperature during the summer baseflow period. The 0.00 m3/s scenario resulted in 130 h of thermal stress for benthic fishes, and 73 h for mid-column fishes. As expected, thermal relief increased with increasing release magnitude and decreasing release water temperature. The 0.34 m3/s release scenario reduced thermal stress (range is simulations from the top and bottom gate) by 11-18% for mid-column fishes and 8-12% for benthic fishes with an effective distance (where the cumulative time above CTMax was reduced by half) of 1-2 km for both guilds. The 0.59 m3/s release scenario reduced thermal stress by 18-25% for mid-column fishes and 12-20% for benthic fishes with effective distances of 4-8 km and 2-7 km, respectively. Three releases representing pre-dam flow magnitudes (0.76, 1.13 and 1.50 m3/s released from top gate) reduced thermal stress up to 46% for mid-column fishes and 41% for benthic fishes with an effective distance of 13-16 km, respectively. Lastly, we quantified temperature-induced stress via whole-body cortisol concentration of six stream fishes in response to prolonged thermal exposure at two temperatures (27°C and 32°C). We found no difference in cortisol levels between temperatures for any of the six species, indicating acclimation to elevated temperatures during the test period. However, Highland Stoneroller Campostoma spadiceum expressed cortisol concentrations greater than typical basal levels at both temperatures, suggesting stress from factors other than temperature (i.e., captivity). Our results suggest different reservoir-release options could improve downstream thermal-fish habitat during the summer baseflow period.

Cooperator Science Series↗

USGS2023

Why are larger fish farther upstream? Testing multiple hypotheses using Silver Chub in two Midwestern United States riverscapes

Objective Three competing hypotheses might explain the widely documented intrapopulation larger-fish-upstream phenomenon. The age-phased recruitment hypothesis posits that fish spawn downstream and move upstream as they age and grow, the static population with growth and mortality gradients hypothesis posits that fish spawn throughout a riverscape and growth is greater upstream while recruitment is greater downstream, and the colonization cycle hypothesis posits that fish spawn upstream, larvae drift downstream, and individuals move upstream as they age and grow. Methods We tested for the larger-fish-upstream pattern using populations of Silver Chub Macrhybopsis storeriana in the Arkansas and Ohio rivers, as well as investigated longitudinal variation in reproductive investment (Arkansas River), age structure for adult fish (Arkansas River), and number and occurrence of age-0 fish (Ohio River). Result The larger-fish-upstream pattern was temporally persistent in both riverscapes. In the Arkansas River, reproductive investment was greatest upstream, where initiation of spawning likely occurred based on gonadosomatic indices. Adult fish were most numerous in the Arkansas River 125–175 km upstream from Kaw Reservoir, with age-2 fish numbers peaking farther upstream compared with age-1 fish. In the Ohio River, age-0 fish counts increased downstream and were rare among the shortest river fragments (<100 km) between lock-and-dam structures. These findings are inconsistent with the age-phased recruitment hypothesis based on upstream spawning in the Arkansas River and inconsistent with the static population with growth and mortality gradients hypothesis based on virtual absence of age-2 fish downstream (Arkansas River) and age-0 fish upstream (Ohio River). The most likely explanation for longitudinal variation in Silver Chub size distribution is downstream drift of ichthyoplankton followed by net upstream movement (i.e., colonization cycle hypothesis), but formal assessments of movement and ova characteristics require more research. Conclusion Managing multidimensional riverscapes requires insight into the mechanisms that regulate upstream-to-downstream patterns in fish populations, and our work underscores a potential size-related benefit to maintaining broadscale longitudinal connectivity.

Arkansas River, Ohio River↗

USGS2006

Patterns of fish use and piscivore abundance within a reconnected saltmarsh impoundment in the northern Indian River Lagoon, Florida

Nearly all saltmarshes in east-central, Florida were impounded for mosquito control during the 1960s. The majority of these marshes have since been reconnected to the estuary by culverts, providing an opportunity to effectively measure exchange of aquatic organisms. A multi-gear approach was used monthly to simultaneously estimate fish standing stock (cast net), fish exchange with the estuary (culvert traps), and piscivore abundance (gill nets and bird counts) to document patterns of fish use in a reconnected saltmarsh impoundment. Changes in saltmarsh fish abundance, and exchange of fish with the estuary reflected the seasonal pattern of marsh flooding in the northern Indian River Lagoon system. During a 6-month period of marsh flooding, resident fish had continuous access to the marsh surface. Large piscivorous fish regularly entered the impoundment via creeks and ditches to prey upon small resident fish, and piscivorous birds aggregated following major fish movements to the marsh surface or to deep habitats. As water levels receded in winter, saltmarsh fish concentrated into deep habitats and emigration to the estuary ensued (200% greater biomass left the impoundment than entered). Fish abundance and community structure along the estuary shoreline (although fringed with marsh vegetation) were not analogous to marsh creeks and ditches. Perimeter ditches provided deep-water habitat for large estuarine predators, and shallow creeks served as an alternative habitat for resident fish when the marsh surface was dry. Use of the impoundment as nursery by transients was limited to Mugil cephalus Linnaeus, but large juvenile and adult piscivorous fish used the impoundment for feeding. In conclusion, the saltmarsh impoundment was a feeding site for piscivorous fish and birds, and functioned as a net exporter of forage fish to adjacent estuarine waters. ?? Springer 2006.

Wetlands Ecology and Management↗

USGS2005

Physiological response of wild rainbow trout to angling: Impact of angling duration, fish size, body condition, and temperature

This study evaluated the immediate physiological response of wild rainbow trout to catch-and-release angling in the Alagnak River, southwest Alaska. Information was recorded on individual rainbow trout (n = 415) captured by angling including landing time and the time required to remove hooks (angling duration), the time to anesthetize fish in clove oil and withdraw blood, fish length and weight, and water temperature at capture locations. Plasma cortisol, glucose, ions (sodium, potassium, chloride), and lactate were analyzed to determine the effects of angling duration, fish size, body condition, and temperature. Levels of plasma ions did not change significantly during the observed physiological response and levels of plasma glucose were sometimes influenced by length (2000, 2001), body condition (2001), or temperature (2001). Levels of plasma cortisol and lactate in extended capture fish (angling duration greater than 2 min) were significantly higher than levels in rapid capture fish (angling duration less than 2 min). Rapid capture fish were significantly smaller than extended capture fish, reflecting that fish size influenced landing and handling times. Fish size was related to cortisol and lactate in 2002, which corresponded to the year when larger fish were captured and there were longer landing times. Body condition (i.e., weight/length regression residuals index), was significantly related to lactate in 2000 and 2001. Water temperatures were higher in 2001 (mean temperature ± S.E., 13 ± 2 o C) than in 2002 (10 ± 2 o C), and fish captured in 2001 had significantly higher cortisol and lactate concentrations than fish captured in 2002. The pattern of increase in plasma cortisol and lactate was due to the amount of time fish were angled, and the upper limit of the response was due to water temperature. The results of this study indicate the importance of minimizing the duration of angling in order to reduce the sublethal physiological disturbances in wild fish subjected to catch-and-release angling, particularly during warmer water temperatures. It is also important to note that factors such as fish size may influence both the duration of angling and subsequent physiological response.

Fisheries Research↗

USGS2007

Chemical contaminants, health indicators, and reproductive biomarker responses in fish from the Colorado River and its tributaries

Common carp (Cyprinus carpio), black bass (Micropterus spp.), and channel catfish (Ictalurus punctatus) were collected from 14 sites in the Colorado River Basin (CRB) to document spatial trends in accumulative contaminants, health indicators, and reproductive biomarkers. Organochlorine residues, 2,3,7,8-tetrachlorodibenzo-p-dioxin-like activity (TCDD-EQ), and elemental contaminants were measured in composite samples of whole fish, grouped by species and gender, from each site. Selenium (Se) and mercury (Hg) concentrations in fish were elevated throughout the CRB, and pesticide concentrations were greatest in fish from agricultural areas in the Lower Colorado River and Gila River. Selenium concentrations exceeded toxicity thresholds for fish (> 1.0????g/g ww) at all CRB sites except the Gila River at Hayden, Arizona. Mercury concentrations were elevated (> 0.1????g/g ww) in fish from the Yampa River at Lay, Colorado; the Green River at Ouray National Wildlife Refuge (NWR), Utah and San Rafael, Utah; the San Juan River at Hogback Diversion, New Mexico; and the Colorado River at Gold Bar Canyon, Utah, Needles, California, and Imperial Dam, Arizona. Concentrations of p,p???-DDE were relatively high in fish from the Gila River at Arlington, Arizona (> 1.0????g/g ww) and Phoenix, Arizona (> 0.5????g/g ww). Concentrations of other formerly used pesticides including toxaphene, total chlordanes, and dieldrin were also greatest at these two sites but did not exceed toxicity thresholds. Currently used pesticides such as Dacthal, endosulfan, ??-HCH, and methoxychlor were also greatest in fish from the Gila River downstream of Phoenix. Total polychlorinated biphenyls (PCBs; > 0.11????g/g ww) and TCDD-EQs (> 5??pg/g ww) exceeded wildlife guidelines in fish from the Gila River at Phoenix. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also relatively high in carp from the Gila River at Phoenix and in bass from the Green River at Ouray NWR. Fish from some sites showed evidence of contaminant exposure as indicated by fish health indicators and reproductive biomarker results. Multiple health indicators including altered body and organ weights and high health assessment index scores may be associated with elevated Se concentrations in fish from the Colorado River at Loma, Colorado and Needles. Although grossly visible external or internal lesions were found on most fish from some sites, histopathological analysis determined many of these to be inflammatory responses associated with parasites. Edema, exophthalmos, and cataracts were noted in fish from sites with elevated Se concentrations. Intersex fish were found at seven of 14 sites and included smallmouth bass (M. dolomieu), largemouth bass (M. salmoides), catfish, and carp and may indicate exposure to endocrine disrupting compounds. A high proportion of smallmouth bass from the Yampa River at Lay (70%) was intersex but the cause of this condition is unknown. Male carp, bass, and catfish with low concentrations of vitellogenin were common in the CRB. Comparatively high vitellogenin concentrations (> 0.2??mg/mL) were measured in male bass from the Green River at Ouray NWR and the Colorado River at Imperial Dam and indicate exposure to estrogenic or anti-androgenic chemicals. Anomalous reproductive biomarkers including low GSI and gonadal abnormalities (calcifications, edema, and parasites) observed in fish downstream of Phoenix are likely related to the poor water-quality of the Gila River in this area.

Colorado River Basin↗

USGS2003

Relations between introduced fish and environmental conditions at large geographic scales

Data collected from 20 major river basins between 1993 and 1995 as part of the US Geological Survey's (USGS) National Water-Quality Assessment (NAWQA) Program were analyzed to assess patterns in introduced and native fish species richness and abundance relative to watershed characteristics and stream physicochemistry. Sites (N = 157) were divided into three regions-northeast, southeast, and west- to account for major longitudinal differences in precipitation/runoff and latitudinal limits of glaciation that affect zoogeographic patterns in fish communities. Common carp (Cyprinus carpio) and largemouth bass (Micropterus salmoides) were the most frequently collected introduced fish species across all river basins combined. Based on the percentage of introduced fish species, the fish communities most altered by the presence of introduced fish occurred in the western and northeastern parts of the US. Native fish species richness was not an indicator of introduced fish species richness for any of the three regions. However, in the west, introduced fish species richness was an indicator of total fish species richness and the abundance of introduced fish was negatively related to native fish species richness. Some relations between introduced fish species and environmental conditions were common between regions. Increased introduced fish species richness was related to increased population density in the northeast and southeast; increased total nitrogen in the northeast and west; and increased total phosphorous and water temperature in the southeast and west. These results suggest that introduced fish species tend to be associated with disturbance at large geographic scales, though specific relations may vary regionally. ?? 2003 Elsevier Science Ltd. All rights reserved.

Ecological Indicators↗

USGS2012

Feeding response of sport fish after electrical immobilization, chemical sedation, or both

Fishery managers frequently capture wild fish for a variety of fishery management activities. Though some activities can be accomplished without immobilizing the fish, others are accomplished more readily, humanely, and safely (for both the handler and the fish) when fish are immobilized by physical (e.g., electrical immobilization) or chemical sedation. A concern regarding the use of chemical sedatives is that chemical residues may remain in the fillet tissue after the fish recovers from sedation. If those residues are harmful to humans, there is some risk that a postsedated fish released to public waters may be caught and consumed by an angler. To characterize this risk, a series of four trials were conducted. Three trials assessed feeding activity after hatchery-reared fish were electrically immobilized, chemically sedated, or both, and one trial assessed the likelihood of an angler catching a wild fish that had been electrically immobilized and chemically sedated. Results from the first trial indicated that the feeding activity of laboratory habituated fish was variable among and within species after electrical immobilization, chemical sedation, or both. Results from the second trial indicated that the resumption of feeding activity was rapid after being mildly sedated for 45 min. Results from the third trial indicated that the feeding activity of outdoor, hatchery-reared fish was relatively aggressive after fish had been chemically sedated. Results from the fourth trial indicated that the probability of capturing wild fish in a more natural environment by angling after fish had been electrically immobilized and chemically sedated is not likely, i.e., in a group of five fish caught, 3 out of 100 times one would be a fish that had been sedated.

North American Journal of Fisheries Management↗

USGS2025

Flying fish habitat and co-occurrence with seabirds in the northern Gulf of Mexico

Flying fish (family Exocoetidae ) play an important role in marine food webs, linking sub-surface and aerial predators. The association of seabirds with sub-surface predators in subtropical and tropical regions through facilitated foraging events is a well-known phenomenon and is sometimes used to identify fishing grounds for flying fish, flying fish roe, and tunas. In the northern Gulf of Mexico (nGoM), few studies have assessed flying fish distribution, and none have directly evaluated flying fish–seabird co-occurrence. Using vessel-based observations of surfacing flying fish flights, we characterized the distribution of flying fish and their co-occurrence patterns with seabirds in the nGoM. We modeled the distribution and relative density of flying fish flights using Generalized Additive Models. We then assessed co-occurrence patterns of flying fish with all seabird species seen in the area, encompassing the footprint of flying fish detections. Flying fish were detected across the U.S. Exclusive Economic Zone, with flight densities greater on the mid-continental shelf and into pelagic waters south of Louisiana, and greater flight densities were associated with regionally low chlorophyll- a and warm water. Flying fish flights were greatest in spring months through early fall months. Sooty terns ( Onychoprion fuscatus ), considered near-obligate commensals with tuna, contributed a much higher percent of the cumulative density of the seabirds co-occurring with versus without flying fish. Flying fish could be an ecological attractant for high abundances of visually conspicuous sooty terns, the presence of which may lead to the formation of ephemeral facilitated foraging events consisting of mixed-species seabird flocks.

Fisheries Oceanography↗

USGS2000

Diversity, distribution, and conservation status of the native freshwater fishes of the southern United States

The Southeastern Fishes Council Technical Advisory Committee reviewed the diversity, distribution, and status of all native freshwater and diadromous fishes across 51 major drainage units of the southern United States. The southern United States supports more native fishes than any area of comparable size on the North American continent north of Mexico, but also has a high proportion of its fishes in need of conservation action. The review included 662 native freshwater and diadromous fishes and 24 marine fishes that are significant components of freshwater ecosystems. Of this total, 560 described, freshwater fish species are documented, and 49 undescribed species are included provisionally pending formal description. Described subspecies (86) are recognized within 43 species, 6 fishes have undescribed subspecies, and 9 others are recognized as complexes of undescribed taxa. Extinct, endangered, threatened, or vulnerable status is recognized for 28% (187 taxa) of southern freshwater and diadromous fishes. To date, 3 southern fishes are known to be extinct throughout their ranges, 2 are extirpated from the study region, and 2 others may be extinct. Of the extant southern fishes, 41 (6%) are regarded as endangered, 46 (7%) are regarded as threatened, and 101 (15%) are regarded as vulnerable. Five marine fishes that frequent fresh water are regarded as vulnerable. Our assessment represents a 75% increase in jeopardized southern fishes since 1989 and a 125% increase in 20 years. The trend for fishes in the southern United States is clear; jeopardized fishes are successively being moved from the vulnerable category to that of imminent threat of extinction.

Fisheries↗

USGS2020

Fish and habitat assessment in Rock Creek, Klickitat County, southeastern Washington, 2018

Executive Summary Native steelhead (anadromous form of rainbow trout [ Oncorhynchus mykiss ]) and bridgelip sucker ( Catostomus columbianus ) were historically used by the Kah-miltpah (Rock Creek) Band for sustenance, trade, and traditional practices in Rock Creek, a tributary to the Columbia River in southeastern Washington State. Rock Creek flows south to the Columbia River at river kilometer (rkm) 368 and is an intermittent stream of great significance to the Yakama Nation and to the Kah-miltpah Band in particular. Concern over declines in the abundance of these fish in Rock Creek prompted a research and monitoring program to better understand habitat conditions, population status, and limiting factors. In addition to steelhead and bridgelip sucker, coho salmon ( Oncorhynchus kisutch ) and resident rainbow trout are also present and monitored. Rainbow trout and steelhead will be collectively referred to as O. mykiss . Streamflow is a limiting habitat factor in this system, but steelhead and coho salmon still successfully return to spawn, rear, outmigrate, and survive over summer in many of the isolated pools that provide important refuge for juvenile rearing. We completed a habitat survey during autumn 2018 to assess the perennial pools during low-flow conditions. In Rock Creek, the overall percentage of habitat recorded as dry was 41, non-pool wet was 42, and pool was 17. The number of pools ( n =93) recorded was less than during previous years’ survey efforts (2015–17). The percentage of non-pool wet habitat was generally higher in 2018 than in previous years. This is a likely result of habitat reaches, which in the past, were considered pools but have become shallower and smaller and are now categorized as non-pool wet habitat. However, the fewer habitat reaches categorized as pools in 2018 now have an average length, area, and depth that are generally greater than in past years. In Walaluuks Creek, the percentage of habitat recorded as dry was 53, non-pool wet was 40, and pool was 7. The percentage of pool habitat was the lowest of all years surveyed since 2015. Fish sampling occurred during autumn after habitat surveys were completed from October 1 to November 9. Fish species distribution, relative abundance, length-frequency distribution, and pool fish density were determined using backpack electrofishing in stratified, systematically selected pools. During fish sampling, 855 O. mykiss were handled and 662 were tagged with a passive integrated transponder (PIT) tag, and 718 coho salmon were handled and 567 were PIT tagged. A total of 536 bridgelip suckers and largescale suckers ( Catostomus macrocheilus [ n =6]) were handled and 294 were PIT tagged. In Rock Creek, pool abundance estimates were calculated for six pools for both O. mykiss age classes (age 0 and age 1 or older [age 1+]) and one additional pool for age 1+. For pools where age-0 O. mykiss were present, the average pool population abundance was 0.144 ( n =6; range: 0.052–0.208) fish per square meter. For age-1+ O. mykiss , the average pool population abundance was 0.045 ( n =7; range: 0.002–0.179) fish per square meter. For age-0 O. mykiss in Walaluuks Creek, the average pool abundance was 0.207 fish per square meter ( n =7; range: 0.038–0.416), and for age-1+ fish, the average pool abundance was 0.382 fish per square meter ( n =6; range: 0.009–0.761). In Rock Creek, coho salmon were more abundant than O. mykiss in pools except for three pools upstream from rkm 20. The average pool abundance for coho salmon was 0.256 fish per square meter ( n =8; range: 0.019–0.756) in Rock Creek pools. In Walaluuks Creek, coho salmon were captured in four pools and were not captured in the upstream pools sampled. The average pool abundance for coho salmon in the four lower pools was 0.488 fish per square meter ( n =4; range: 0.417–0.548). Bridgelip suckers were captured in all pools in Rock Creek except the pool sampled at rkm 21.8. The average pool abundance for bridgelip suckers was 0.552 fish per square meter ( n =7; range: 0.015–1.554) in Rock Creek. Bridgelip suckers were captured in three downstream pools in Walaluuks Creek, and the average abundance was 0.044 fish per square meter ( n =3; range: 0.024–0.085). Overwinter and reach survival probabilities were estimated for O. mykiss and coho salmon using a Cormack-Jolly-Seber modeling approach. The best fit survival model for the O. mykiss and coho salmon was a reach only model. The upstream reach includes overwinter survival probability because fish are tagged and released in autumn and primarily migrate the following spring. During 2018, coho salmon (0.568, standard error [SE]=0.027) had a significantly higher probability of overwinter survival than O. mykiss (0.276, SE=0.019). The reach survival probability was higher for O. mykiss than coho salmon in the downstream migratory reaches. Survival was not modeled for bridgelip suckers. For bridgelip suckers, 147 were detected of 294, that were PIT tagged and released in the Rock Creek subbasin (50.0 percent). Information provided in this report increases our understanding of the status and trends of these populations. It further documents how intermittent streams can support salmonid populations. It also provides insight into potential management and restoration actions that could be beneficial and timing and allocation of resources. Ongoing monitoring work of this population will inform progress towards Rock Creek species recovery goals and contribution to recovery goals for the steelhead Middle Columbia River Distinct Population Segment.

Washington↗

USGS2022

Evaluation of fish behavior at the entrances to a Selective Water Withdrawal structure in Lake Billy Chinook, Oregon, 2021

Imaging sonar was used to assess the behavior, abundance, and timing of fish at the entrances to the Selective Water Withdrawal (SWW) intake structure located in the forebay of Round Butte Dam, Oregon during the spring of 2021. The purposes of the SWW are (1) to direct surface currents in the forebay to attract and collect downriver migrating juvenile salmonid smolts (Chinook salmon [ Oncorhynchus tshawytscha ], sockeye salmon [ O. nerka ], and steelhead [ O. mykiss ]) from Lake Billy Chinook and (2) to enable operators of the SWW to withdraw water from surface and benthic elevations in the reservoir to manage downriver water temperatures. Part of the evaluation, to determine how well the structure performs at collecting juvenile salmonids, needs (A) to regularly assess how fish are approaching the entrance, and (B) to determine if operational flows could be optimized to increase the attraction of smolts present in the forebay of Lake Billy Chinook. The primary goals of this study were (1) to assess the abundance and behaviors of smolt-size fish observed near the SWW and (2) to provide data of the effect of two-night generation operation timing conditions on movements and behaviors of fish near the entrance to the SWW structure. The purpose of this assessment is to improve downstream passage solutions. Two imaging sonar units were deployed during the spring 2021 smolt out-migration period. One unit monitored fish movements near the south entrance and one unit monitored movements near the north entrance of the SWW. Both smolt and bull trout ( Salvelinus confluentus )-size fish were regularly observed near the entrances with greater abundances observed during night, corresponding with greater discharge through the SWW than during the day when discharge was reduced. Differences in fish abundance were observed between the night generation operation timing conditions, with increased fish counts observed when elevated discharge was extended to 6:00 a.m., rather than when discharges have been traditionally reduced in the early morning at 4:00 a.m. Fish of all size groups were primarily observed near the center of the SWW, and greater abundances of fish were observed at the south entrance. Increased counts of bull trout-size fish coincided with the increased abundances of smolt-size fish. Overall, the results indicate that (A) smolt-size fish were more abundant near the entrance of the SWW during periods of increased discharge, (B) bull trout-size fish were present at the SWW, and (C) fish were more numerous at the SWW when night generation operation timing was extended later into the morning hours rather than the traditional operation timing flow reduction.

Oregon↗

USGS2007

Selenium and Mercury Concentrations in Fish, Wolford Mountain Reservoir, Colorado, 2005

A reconnaissance investigation of selenium and total mercury in fish in Wolford Mountain Reservoir, Colorado, was conducted by the U.S. Geological Survey in June 2005, in cooperation with the Colorado River Water Conservation District. A total of 32 game and nongame fish were collected from three sites in the reservoir for analysis of selenium and total mercury. Five species of fish were sampled: white sucker (Catostomus commersonii, n=17), brown trout (Salmo trutta, n=5), rainbow trout (Oncorhynchus mykiss, n=5), cutthroat trout (Oncorhynchus clarkii, n=3), and splake (Salvelinus fontinalis x Salvelinus namaycush, n=2). Selenium concentrations ranged from 1.05 to 11.7 micrograms per gram (equivalent to parts per million or ppm) dry weight, whole body. Almost 22 percent (7 of 32) of fish samples had selenium concentrations greater than 7.91 micrograms per gram dry weight, the U.S. Environmental Protection Agency 2004 draft freshwater chronic criterion for selenium in whole-body fish tissue. Total mercury concentrations in muscle plug samples ranged from 0.012 to 0.320 microgram per gram wet weight. Concentrations of mercury in muscle plug samples are comparable to concentrations in fillet samples, and only one fish sample, a nongame white sucker, had a total mercury concentration greater than the U.S. Environmental Protection Agency water-quality criterion for the protection of human health of 0.3 microgram per gram wet weight in fillets. Converting muscle plug or fillet concentrations of mercury to whole-body concentrations, four fish samples (12.5 percent) had estimated whole-body total mercury concentrations greater than 0.1 microgram per gram wet weight concentration in whole-body fish tissue, the U.S. Fish and Wildlife Service criterion for protection of fish-eating birds and wildlife. Water-quality data for dissolved selenium and total mercury in two tributaries and three reservoir sites were compiled and compared. Dissolved concentrations of selenium in one tributary and one reservoir site (prior to 1998) were greater than 4.6 micrograms per liter, the State of Colorado chronic water-quality standard for dissolved selenium for protection of aquatic life. Total mercury concentrations in most water samples from two tributaries and three reservoir sites were less than or equal to 0.01 microgram per liter, the State of Colorado chronic water-quality standard for total mercury for protection of aquatic life. Selenium and mercury in fish in Wolford Mountain Reservoir most likely are not directly related to selenium and mercury concentrations in reservoir water, as most selenium and mercury in fish tissue results from the presence of selenium and mercury in the diet rather than through gill uptake from water. Results of this reconnaissance investigation of selenium and total mercury in fish in Wolford Mountain Reservoir indicate that concentrations of selenium were elevated in some fish. Most total mercury concentrations in fish were less than criteria levels.

Scientific Investigations Report↗