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At least 217 records · Page 12Linked to original sources
USGS2019

Diving behavior of Pink-footed Shearwaters Ardenna creatopus rearing chicks on Isla Mocha, Chile

Recent information reporting Pink-footed Shearwater Ardenna creatopus mortality from fisheries bycatch throughout its range has encouraged fisheries managers in Chile to evaluate and consider shearwater foraging behaviors to better evaluate risk. In response, we tracked six chickrearing adult Pink-footed Shearwaters from Isla Mocha, off south-central Chile, from 19 to 28 March 2015 using global positioning sensors and time-depth recorders. We recorded seven complete trips averaging 4.2 ± 2.5 d (mean ± SD). Chick-provisioning adults foraged within 334 km (i.e., 175 ± 100 km) of Isla Mocha. Dives (n = 515) occurred throughout the measured foraging range but most frequently occurred within 5–30 km from the mainland coast, in continental shelf waters north of Valdivia. Other regions with diving behavior were within ~20 km of Isla Mocha, and from Lebu to north of Talcahuano. Based on movement behavior analysis, adults spent most of their time at sea “resting/ foraging” (62% ± 6%), with the remainder spent “searching” (16% ± 4%) and “transiting” (20% ± 5%). The proportions of total number of dives associated with these three behaviors were similar. On average, dives were relatively shallow (1.6 ± 1.2 m, maximum depth = 10.1 m) and brief (4.7 ± 4.8 s, maximum duration = 25.7 s). Dives occurred during the day, at night, and at twilight, with most activity occurring at twilight and during the day. Although based on a small sample size, our results may be useful for informing modifications to fishing gear or fisheries policy to reduce the likelihood of bycatch and thus meet Chilean conservation goals for Pink-footed Shearwaters.

Isla Mocha↗
USGS2017

Experimental stocking of sport fish in the regulated Tallapoosa River to determine critical periods for recruitment

The stocking of fish in riverine systems to re-establish stocks for conservation and management appears limited to a few species and often occurs in reaches impacted by impoundments. Stocking of sport fish species such as centrarchids and ictalurids is often restricted to lentic environments, although stocking in lotic environments is feasible with variable success. R. L. Harris Dam on the Tallapoosa River, Alabama is the newest and uppermost dam facility on the river (operating since 1983); flows from the dam have been managed adaptively for multiple stakeholder objectives since 2005. One of the stakeholders’ primary objectives is to provide quality sport fisheries in the Tallapoosa River in the managed area below the dam. Historically, ictalurids and cyprinids dominated the river above Lake Martin. However, investigations after Harris Dam closed have detected a shift in community structure to domination by centrarchids. Flow management (termed the Green Plan) has been occurring since March 2005; however, sport fish populations as measured by recruitment of age-1 sport fishes below the dam has not responded adequately to flow management. The objectives of this research were to: (1) determine if stocking Channel Catfish Ictalurus punctatus and Redbreast Sunfish Lepomis auritus influences year-class strength; (2) estimate vital rates (i.e. growth, mortality, and recruitment) for Channel Catfish populations for use in an age-based population model; and (3) identify age-specific survivorship and fecundity rates contributing to Channel Catfish population stability. No marked Redbreast Sunfish were recaptured due to poor marking efficacy and therefore no further analysis was conducted with this species. Stocked Channel Catfish, similarly, were not recaptured, leaving reasons for non-recapture unknown. Matrix models exploring vital rates illustrated survival to age-1 for Channel Catfish to be less than 0.03% and that survival through ages 2 – 4 had equal contribution to overall population growth, indicating recruitment limitation may impact population size and stability. Results from this study indicate stock enhancement of sport fish populations below Harris Dam may not be an effective management technique at this time.

Alabama↗
USGS2014

Non-native fishes in Florida freshwaters: a literature review and synthesis

Non-native fishes have been known from freshwater ecosystems of Florida since the 1950s, and dozens of species have established self-sustaining populations. Nonetheless, no synthesis of data collected on those species in Florida has been published until now. We searched the literature for peer-reviewed publications reporting original data for 42 species of non-native fishes in Florida that are currently established, were established in the past, or are sustained by human intervention. Since the 1950s, the number of non-native fish species increased steadily at a rate of roughly six new species per decade. Studies documented (in decreasing abundance): geographic location/range expansion, life- and natural-history characteristics (e.g., diet, habitat use), ecophysiology, community composition, population structure, behaviour, aquatic-plant management, and fisheries/aquaculture. Although there is a great deal of taxonomic uncertainty and confusion associated with many taxa, very few studies focused on clarifying taxonomic ambiguities of non-native fishes in the State. Most studies were descriptive; only 15 % were manipulative. Risk assessments, population-control studies and evaluations of effects of non-native fishes were rare topics for research, although they are highly valued by natural-resource managers. Though some authors equated lack of data with lack of effects, research is needed to confirm or deny conclusions. Much more is known regarding the effects of lionfish ( Pterois spp.) on native fauna, despite its much shorter establishment time. Natural-resource managers need biological and ecological information to make policy decisions regarding non-native fishes. Given the near-absence of empirical data on effects of Florida non-native fishes, and the lengthy time-frames usually needed to collect such information, we provide suggestions for data collection in a manner that may be useful in the evaluation and prediction of non-native fish effects.

Florida↗
USGS2024

Documentation of a probable spawning run of cisco Coregonus artedi in the Spanish River, Ontario, Canada

Coregonines were historically diverse and abundant in the Laurentian Great Lakes but declined throughout the 19th and 20th centuries due to multiple factors, including overfishing, habitat degradation, and interactions with invasive species. Great Lakes fishery managers are now working to restore coregonines across the basin. An important aspect of restoration efforts is the identification of key habitats, such as spawning habitats. Our understanding of the extent and diversity of coregonine spawning habitats in the Great Lakes is limited. Historical accounts suggest some cisco Coregonus artedi migrated to tributaries to spawn, but contemporary runs have not been reported. Moreover, cisco display considerable phenotypic variation, with different “forms” often occupying specific habitats or regions. We provide evidence for a previously undocumented spawning run of cisco in the Spanish River, a tributary to the North Channel of Lake Huron. We captured 31 mature and ripe fish (25 males, 6 females) approximately 52 km upstream of the river mouth on 15–16 November 2022. The fish ranged in age from 3-9 yr and total length from 287-394 mm. Of these 31 individuals, 27 were morphologically similar to C. artedi manitoulinus , a subspecies of cisco found in the North Channel; however, four individuals more closely resembled cisco captured in other areas of Lake Huron. These findings represent the best evidence of tributary spawning by cisco since the 1880s, and they have important implications for coregonine conservation and restoration efforts. Ongoing work aims to augment our understanding of the ecological and evolutionary importance of this population.

Ontario↗
USGS2025

Predation of Lost River and Shortnose suckers by piscivorous colonial waterbirds in the Upper Klamath Basin: An analysis of predation effects during 2021–2023

Previously published research indicated that predation by piscivorous colonial waterbirds in the Upper Klamath Basin was a source of mortality for Lost River suckers ( Deltistes luxatus ) and Shortnose suckers ( Chasmistes brevirostris ), including mortality of Sucker Assisted Rearing Program (SARP) fish. Avian predation on recently released Chinook Salmon ( Oncorhynchus tshawytscha ) in the Upper Klamath Basin has not been studied. To provide fisheries managers with the most up-to-date information, we estimated predation rates on passive integrated transponder tagged (PIT) suckers and Chinook Salmon by breeding colonies of American White Pelicans ( Pelecanus erythrorhynchos ), Double-crested Cormorants ( Nannopterum auritum ), Caspian Terns ( Hydroprogne caspia ), California Gulls ( Larus californicus ), Ring-billed Gulls ( L. delawarensis ), Great Blue Herons ( Ardea herodias ), and Great Egrets ( A. alba ) during 2021–2023. Predation rate estimates were variable depending on the fish species, age-class (juvenile, adult), waterbody (Upper Klamath Lake, Clear Lake Reservoir, Sheepy Lake), and year. Results indicated that avian predation rates were highest on juvenile suckers and on suckers in Clear Lake Reservoir. SARP fish released in the spring/summer were more likely to be consumed by breeding birds than those released in the fall/winter, although the number of fish released in the fall/winter that survived to the spring/summer was unknown and could bias predation estimates low. Predation rate estimates on Chinook Salmon varied by year, release timing (spring/summer, fall/winter), release location (Upper Klamath Lake, Klamath River), and age-class (subyearling, yearling). The location and size of colonies were also highly variable depending on the bird species, colony location, and year. Future research could focus on identifying biotic and abiotic factors associated with sucker susceptibility to piscivorous colonial waterbirds and determining to what degree avian predation limits the recovery of suckers in the Upper Klamath Basin.

California, Oregon↗
USGS2019

Life-history model for sockeye salmon (Oncorhynchus nerka) at Lake Ozette, northwestern Washington—Users' guide

Salmon populations spawning in the Lake Ozette watershed of northwestern Washington were once sufficiently abundant to support traditional Tribal fisheries, and were later harvested by settlers. However, in 1974 and 1975, the sockeye salmon ( Oncorhynchus nerka ) harvest decreased to 0 from a high of more than 17,500 in 1949, thus stimulating research into the causes of decrease, which resulted in eventual listing of the population as threatened under the Endangered Species Act in 1999. The listing status was upheld in 2005 and 2014 following 5-year reviews. Meanwhile, research results were compiled in a limiting factors analysis (LFA) and a recovery plan was developed. Although there has been some improvement in sockeye abundance since listing, the numbers remain too low to allow harvest and it is not yet clear which of the many potential limiting factors are most consequential. As part of the LFA process, a population model was developed to determine values of life-history parameters that would enable the population to survive for 100 years. The model was based on the best available data, but data are limited for the Lake Ozette system. Results informed the qualitative assessment of the importance of limiting factors used to develop the recovery plan for Lake Ozette sockeye. The model was built in Microsoft Excel ® and is difficult to use. The purpose of the model described herein is to synthesize the results of the LFA in a form that can be manipulated by resource managers and the public to create scenarios, test hypotheses, and observe sensitivities of results to changes in parameters. The goal is to provide a tool that enables research, monitoring and management to be focused on the most impactful elements and processes, including identifying the information gaps that are most critical to fill.

Washington↗
USGS2025

USGS—An Unparalleled Scientific Asset

The U.S. Geological Survey (USGS) delivers information critical to powering our economy, managing our natural resources, and keeping Americans safe and healthy. 1 Mapping the Nation $21B Geologic maps save users an estimated 15% in annual costs: a value of between $14B and $21B. $25.6B in annual value to users of imagery from Landsat satellites, which were codeveloped by NASA and the USGS and operated through their lifespans by the USGS. $13.5B in annual benefits is generated by the USGS's 3D Elevation Program. Securing America’s Energy Independence 44% USGS-identified undiscovered geothermal energy is equal to 44% of current U.S. electricity generation. 29.4B barrels of oil and 391.6 trillion cubic feet of gas in recoverable resources are available on U.S. public lands based on USGS assessments. Protecting Americans’ Health and Safety $424B in recent wildland fire damages highlight the need for USGS fire science, which supports efforts to protect communities and reduce risk. USGS earthquake, volcano, landslide, and coastal hazard monitoring and information save lives and minimize costs; for example, $2.8M can be saved because of USGS enhanced information about a Mauna Loa eruption. $4.5B is the estimated cost of annual flooding. Through a network of over 11,885 streamgages, the USGS supports public safety and enables forecasts, early warning systems, and management actions that protect lives and property. Supporting National Security $3.1B The USGS identified a $3.1B risk to the American economy if China restricts gallium imports. This is one example underscoring the importance of the USGS mapping critical minerals, investigating supply chains, and producing the Nation’s critical minerals list. Enhancing Our Lands and Waters $21B in estimated annual costs results from invasive species. The USGS’s invasive species research informs approaches used to reduce their effects on agriculture, water infrastructure, disease transmission, fisheries, and outdoor recreation. USGS innovations support early warnings for harmful algal blooms—over $2M in yearly benefits are provided to Kansas alone. $45B USGS science informs the management of big game (such as deer and elk). The big-game hunting industry contributes $45B to the U.S. economy. Fostering American Prosperity $4.1T Mineral commodities are necessary for the $4.1T in value added to the GDP by major industries that consume processed mineral materials and employ 1 million workers. Because of this, USGS data on mineral supply, demand, and trade are highly valued. 45,000 metric tons Rare earths power the growing technology economy, including cell phones, electric vehicles, and medical devices. For over 70 years, USGS work has supported the discovery of rare earth resources in California’s Mountain Pass area, which produced 45,000 metric tons of rare earth concentrates in 2024—over 11% of the global supply. Guarding American Food Security $70.2B USGS science informs early warning systems and management strategies to mitigate disease outbreaks in agriculture—critical research on highly pathogenic avian influenza, for example, helps safeguard the $70B value in poultry and egg production. $11.8B USGS groundwater tools are vital for agriculture; for example, in the Mississippi Alluvial Plain, 65% of farming relies on groundwater to support its $11.8B annual industry. 1 Values throughout are given in billions (B), millions (M), and trillions (T) of U.S. dollars. GDP is “Gross Domestic Product.” Percentages are shown as %.

General Information Product↗
USGS2026

Field performance evaluation of a bayluscide 20-percent suspension concentrate formulation

Petromyzon marinus (sea lamprey) is a parasitic, invasive fish of the Laurentian Great Lakes. Since the late 1950s, the Great Lakes Fishery Commission has implemented an integrated Sea Lamprey Control Program (SLCP) that relies on two lampricidal chemicals: 3-(trifluoromethyl)-4-nitrophenol (TFM) and niclosamide. Niclosamide is applied using a bayluscide 20-percent emulsifiable concentrate; however, a solvent in this formulation, N -methyl-2-pyrrolidone, has been linked with worker safety concerns and has contributed to equipment degradation and clogging. To address these limitations, the U.S. Geological Survey, in collaboration with Battelle UK, developed a bayluscide 20-percent suspension concentrate (SC) as a potential alternative formulation. In this study, we evaluated the field performance of SC on the Indian River in Schoolcraft County, Michigan. The objective was to assess the formulation’s compatibility with SLCP application procedures and equipment, and to determine its ability to deliver precise lampricide concentrations in a timely manner. SC was found to dilute easily with stream water and readily combined with TFM. As a result, target lampricide concentrations in the stream were achieved within 1 hour of initiating delivery. Moreover, concentrations remained within 9 percent of target values, with less than 2 percent variation across the width of the stream, demonstrating consistent and uniform distribution. These findings indicate that SC can support accurate and timely lampricide applications. When considered alongside previous research highlighting its favorable selectivity for sea lamprey and improved environmental safety, the results support the pursuit of registration and adoption of SC as a new tool for controlling invasive sea lamprey.

Michigan↗
USGS2012

Development of a real-time PCR assay for detection of planktonic red king crab ( Paralithodes camtschaticus (Tilesius 1815)) larvae

The Alaskan red king crab ( Paralithodes camtschaticus ) fishery was once one of the most economically important single-species fisheries in the world, but is currently depressed. This fishery would benefit from improved stock assessment capabilities. Larval crab distribution is patchy temporally and spatially, requiring extensive sampling efforts to locate and track larval dispersal. Large-scale plankton surveys are generally cost prohibitive because of the effort required for collection and the time and taxonomic expertise required to sort samples to identify plankton individually via light microscopy. Here, we report the development of primers and a dual-labeled probe for use in a DNA-based real-time polymerase chain reaction assay targeting the red king crab, mitochondrial gene cytochrome oxidase I for the detection of red king crab larvae DNA in plankton samples. The assay allows identification of plankton samples containing crab larvae DNA and provides an estimate of DNA copy number present in a sample without sorting the plankton sample visually. The assay was tested on DNA extracted from whole red king crab larvae and plankton samples seeded with whole larvae, and it detected DNA copies equivalent to 1/10,000th of a larva and 1 crab larva/5mL sieved plankton, respectively. The real-time polymerase chain reaction assay can be used to screen plankton samples for larvae in a fraction of the time required for traditional microscopial methods, which offers advantages for stock assessment methodologies for red king crab as well as a rapid and reliable method to assess abundance of red king crab larvae as needed to improve the understanding of life history and population processes, including larval population dynamics.

Journal of Shellfish Research↗
USGS1994

Overview of the National Water-Quality Assessment Program

The Nation's water resources are the basis for life and our economic vitality. These resources support a complex web of human activities and fishery and wildlife needs that depend upon clean water. Demands for good-quality water for drinking, recreation, farming, and industry are rising, and as a result, the American public is concerned about the condition and sustainability of our water resources. The American public is asking: Is it safe to swim in and drink water from our rivers or lakes? Can we eat the fish that come from them? Is our ground water polluted? Is water quality degrading with time, and if so, why? Has all the money we've spent to clean up our waters, done any good? The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program was designed to provide information that will help answer these questions. NAWQA is designed to assess historical, current, and future water-quality conditions in representative river basins and aquifers nationwide. One of the primary objectives of the program is to describe relations between natural factors, human activities, and water-quality conditions and to define those factors that most affect water quality in different parts of the Nation. The linkage of water quality to environmental processes is of fundamental importance to water-resource managers, planners, and policy makers. It provides a strong and unbiased basis for better decisionmaking by those responsible for making decisions that affect our water resources, including the United States Congress, Federal, State, and local agencies, environmental groups, and industry. Information from the NAWQA Program also will be useful for guiding research, monitoring, and regulatory activities in cost effective ways.

Open-File Report↗
USGS2010

Seasonal and spatial distribution patterns of finfish and selected invertebrates in coastal lagoons of northeastern Florida, 2002-2004

The U.S. Geological Survey conducted a survey of juvenile fisheries resources, in cooperation with the St. Johns River Water Management District and Volusia County, to establish baseline data on spatial and temporal distribution patterns of estuarine fish. The survey was conducted from November 2001 to March 2005 and the baseline data established for the survey in the Northern Coastal Basins were collected from January 2002 to December 2004. The study area included the bar-built estuaries ranging from just north of St. Augustine, Florida, south to Ponce de Leon Inlet. Sampling protocols developed by the Florida Fish and Wildlife Research Institute for their statewide Fisheries Independent Monitoring (FIM) program were replicated to allow for comparability with FIM program results. Samples were collected monthly from randomly selected stations based on a geographically stratified design. Finfish and selected invertebrates were collected using a 21.3-meter center-bag seine with a 3-millimeter mesh, and a 6.1-meter otter trawl with a 3-millimeter mesh liner. Total estimated fish and selected invertebrate densities were similar to estimates from FIM projects in adjacent areas and were characterized by similar dominant species. Preliminary analysis indicates that observed species distribution patterns were mainly a function of proximity to the three inlets within the study area. The two regions encompassing the northern Tolomato River and the Tomoka River and Basin are farthest from inlets and appear to function as oligohaline nursery areas. Those two areas had the greatest estimated densities of shellfish and juvenile sciaenid (drum) species associated with oligohaline waters (for example, Micropogonias undulatus, Sciaenops ocellatus and Cynoscion nebulosus). Samples near inlets, and between the two northern inlets, had greater estimated densities of species limited to euhaline waters, including juvenile clupeids collected at relatively high abundance and species of marine strays collected in low abundance. Based on correspondence analysis, seasonal variation dominated the ordination of seine samples and spatial variation dominated the ordination of trawl samples; this was due to differences in the number and timing of taxa found near inlets versus oligohaline regions. The absence of seagrass habitat in the Northern Coastal Basins is reflected by the absence of a seagrass-fish assemblage.

Scientific Investigations Report↗
USGS2018

Size, growth, and size‐selective mortality of subyearling Chinook Salmon during early marine residence in Puget Sound

In marine ecosystems, survival can be heavily influenced by size‐selective mortality during juvenile life stages. Understanding how and when size‐selective mortality operates on a population can reveal underlying growth dynamics and size‐selective ecological processes affecting the population and thus can be used to guide conservation efforts. For subyearling Chinook Salmon Oncorhynchus tshawytscha in Puget Sound, previous research reported a strong positive relationship between marine survival and body mass during midsummer in epipelagic habitats within Puget Sound, suggesting that early marine growth drives survival. However, a fine‐scale analysis of size‐selective mortality is needed to identify specific critical growth periods and habitats. The objectives of this study were to (1) describe occupancy patterns across estuarine delta, nearshore marine, and offshore epipelagic habitats in Puget Sound; (2) describe changes in FL and weight observed across habitats and time; (3) evaluate evidence for size‐selective mortality; and (4) illustrate how marine survival of the stocks studied may be affected by variation in July weight. In 2014 and 2015, we sampled FLs, weights, and scales from seven hatchery‐origin and two natural‐origin stocks of subyearling Chinook Salmon captured every 2 weeks during out‐migration and rearing in estuary, nearshore, and offshore habitats within Puget Sound. Natural‐origin stocks had more protracted habitat occupancy patterns than hatchery‐origin stocks and were smaller than hatchery‐origin stocks in both years. Regardless of origin, subyearlings were longer and heavier and grew faster in offshore habitats compared to estuary and nearshore habitats. For all stocks, we found little evidence of size‐selective mortality among habitats in Puget Sound. These patterns were consistent in both years. Finally, the weights of subyearlings sampled during July in the offshore habitat predicted Puget Sound‐wide marine survival rates of 0.4% for 2014 and 2.0% for 2015, with stock‐specific predictions ranging from 0.18% to 11.70%.

Washington↗
USGS1989

Assessing the relationship between Section 404 and wetland losses: a feasibility study

The primary objective of the Clean Water Act of 1977 (33 U.S.C. 1251) is to restore and maintain the physical, chemical, and biological integrity of the Nation's waters. Section 404 of the Act regulates the discharge of dredged or fill materials into wetlands and represents the primary Federal authority for regulation of wetland alterations. Since its inception, the Section 404 program has been controversial in regard to the extent to which it was intended to provide wetlands regulation. Section 404 requires those who wish to discharge dredged or fill material into waters of the United States, which include many wetlands, to first obtain a Federal permit. The Environmental Protection Agency (EPA) has overall responsibility for administration of the Section 404 program and promulgates guidelines that must be followed in issuing permits. In addition, EPA has the final authority to prohibit specific discharges if the environmental impacts are unacceptable. The U.S. Army Corps of Engineers (Corps) issues Section 404 permits, which can be of two types. Individual Permits are issued following case-by-case reviews of proposed discharges. General Permits, which can be either nationwide or regional in scope, are authorized by the Corps for categories of activities that are similar in nature and that have only minimal individual and cumulative adverse environmental impacts. EPA, the National Marine Fisheries Service (NMFS), the Fish and Wildlife Service (Service), and State natural resource agencies review and comment on permit applications and offer recommendations on appropriate mitigation measures. Although comments from the Service and other natural resource agencies are advisory in nature (EPA's veto authority excepted), they can serve as the basis for modifying, conditioning, or denying a Section 404 permit. In 1986, in a survey conducted by the National Ecology Research Center, Service personnel indicated interest in additional information concerning both wetland trends and the impacts of activities authorized by the Corps under Section 404 (Roelle 1986). Although there is some information concerning wetland losses for certain geographic areas and for the Nation as a whole (Frayer et al. 1983; Tiner 1984), there appears to be little information on how these losses relate to the Section 404 permitting process. The primary objective of this study was to determine the feasibility of estimating wetland losses in relationship to Individual and General Permits issued under Section 404. A secondary objective was to assemble data on acceptance and implementation of specific mitigation recommendations offered by the Service and other natural resource agencies in connection with development activities on wetlands examined. At present, 26 categories of Nationwide permits have been authorized by the Corps. Nationwide permit 26 was of particular interest in this study because it specifically authorizes discharges into wetlands under certain circumstances (see Figure 1 and related text for a more complete discussion of circumstances under which Nationwide Permit 26 is applicable). All subsequent references to Nationwide or General permits pertain to Nationwide Permit 26.

Report↗
USGS2020

Impacts of periodic dredging on macroinvertebrate prey availability for benthic foraging fishes in central San Francisco Bay, California

Background Because of its importance for species covered under Federal Fishery Management Plans (FMPs), the San Francisco Bay (SFB) estuary has been designated as Essential Fish Habitat (EFH) under the Magnuson-Stevens Fishery Conservation and Management Act (MSA; 16 United States Code §18559b). Within this estuary, benthic macroinvertebrate communities provide important prey resources for many economically significant fish species that rely on EFH. Periodic maintenance dredging can impact benthic communities; however, there is a lack of scientific information specific to SFB regarding dredging effects on macroinvertebrates in fish foraging areas. In addition, rates of benthic community recolonization and recovery following dredging and subsequent effects on foraging fish are unknown. For this reason, it is difficult for regulatory and resource agencies to determine the impacts of maintenance dredging. Thus, the National Marine Fisheries Service (NMFS) and the consortium of agencies (U.S. Environmental Protection Agency [EPA], U.S. Army Corp of Engineers [USACE], San Francisco Regional Water Quality Control Board [SFRWQCB], and San Francisco Bay Conservation and Development Commission [BCDC]) that make up the San Francisco Bay Long Term Management Strategy for Dredging (LTMS) identified a study of dredging impacts on SFB fish foraging habitat as one of their highest priorities in their 2011 Programmatic EFH Agreement (U.S. Army Corp of Engineers and U.S. Environmental Protection Agency, 2011). The LTMS agencies identified the region of interest as shallow (<13 feet [<4 meters (m)] mean lower low water [MLLW]), soft-bottom (silt/clay soil texture) areas in the Central Bay of SFB that were periodically dredged (every 1–3 years). Fish species of interest were compiled by NMFS and included those managed by the Pacific Groundfish, Pacific Salmon, and Coastal Pelagic FMPs (pursuant to the MSA) as well as those listed under the California State or Federal Endangered Species Act (ESA; 16 U.S.C. §1531–1544) as threatened or endangered. Target species included leopard shark ( Triakis semifasciata ), big skate ( Raja binoculata ), English sole ( Parophrys vetulus ), starry flounder ( Platichthys stellatus) , brown rockfish ( Sebastes auriculatus ), green sturgeon ( Acipenser medirostris ; threatened species under Federal ESA), northern anchovy ( Engraulis mordax ), longfin smelt ( Spirinchus thaleichthys, threatened under California ESA), and Pacific sardine ( Sardinops sagax ). In addition, Dungeness crab ( Cancer magister ), California halibut ( Paralichthys californicus ), and white sturgeon ( Acipenser transmontanus ) also were included because they are substantial contributors to the California State fishery. To address LTMS priorities, U.S. Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary Field Station (hereafter USGS) conducted a multi-phased project including an initial literature review, study design, pilot study, and implementation of a full study. The overarching goal was to assess the effects of periodic dredge operations (every 1–3 years) on benthic habitat for foraging fish in the Central Bay, with emphasis on the foraging requirements of target fish species and analyses of benthic macroinvertebrates in dredged areas compared to adjacent undredged reference areas. The USGS partnered with University of California, Davis, fisheries expert James Hobbs to synthesize existing knowledge of fish foraging ecology and review benthic infauna community composition in SFB with a focus on the Central Bay. The literature review (Phase I; De La Cruz and others, 2016) addressed key questions identified by the LTMS on benthic foraging fish in the study area, including the following: (1) What are target fish eating? (2) What are the seasonal differences in prey items and macroinvertebrate assemblages? (3) What are the annual differences in prey items and macroinvertebrate assemblages? (4) What are the predominant macroinvertebrate functional groups from the perspective of fish foraging? Phase II consisted of creating a framework for a functional assessment of maintenance dredging effects on foraging fish and drafting a full study design (De La Cruz and others, 2017), which was then tested in the Phase III pilot study. The Phase IV full study incorporated lessons learned from the pilot study. Here we focus on the results of the full study and implications for benthic foraging fishes.

California↗
USGS2025

Evaluating how changing climate and water clarity can affect restoration of native coregonine fishes in midwestern lakes

In the upper midwestern United States, coregonine fishes (e.g., ciscoes and whitefishes) have provided a key food source for Indigenous peoples since time immemorial. In the last century, however, several anthropogenic stressors including overfishing, declining quality of key habitat (e.g., dams, algal blooms), and negative interactions with invasive species have led to declines in the fisheries that coregonines support. Hence, fishery managers have undertaken steps to conserve existing diversity or re-introduce species that have been locally extirpated. This study assessed the extent to which changes in water clarity and climate pose challenges for conservation of coregonines and sought to provide information to inform management decisions about which populations would be best for reintroduction. Through experiments, we found that a Cisco ( Coregonus artedi ) population at the southern edge of its range had no marked advantages in respiration or thermal tolerance, relative to a northern Great Lake population. This result indicates that the latter population would be a reasonable candidate for reintroduction in Lake Erie, where warming water could be a potential impediment. Other laboratory experiments revealed that Cisco could be vulnerable to increasing ultraviolet radiation (UV; 280 – 320 nm) penetration in lakes due to reduced ice cover and increased water clarity owing to water quality improvements and/or invasive mussel filtration. Our experiments found that UV exposure causes earlier hatching, more irregular pigmentation near the head and yolk-sac region, and reduced heart rate. Therefore, UV could be a heretofore unrealized threat to Cisco populations. Through the completion of additional final products from this project and additional research connecting laboratory and field data together, the extent to which the eggs and larvae of coregonine species could be vulnerable to increased UV associated with increasing water clarity or reduced ice cover will help inform restoration or conservation planning for these fish.

Cooperator Report↗
USGS2006

Visualizing the geology of lake trout spawning sites: Northern Lake Michigan

Geologists and biologists are working together to understand the links between lake floor geology (composition and shape) and the distribution of lake trout throughout their life cycle. Lake floor geology is one of the main factors determining where lake trout spawn, feed, and hide. In support of ongoing research to study Lake Michigan trout habitats, the U.S. Geological Survey in cooperation with the U.S. Army Corps of Engineers mapped the morphology of principle lake trout spawning sites. Using the Army Corps of Engineer's SHOALS airborne lidar (Light Detection and Ranging) system we mapped six regions in Northern Lake Michigan in order to identify ideal spawning regions composed of shallow, clean, gravel/cobble substrate, adjacent to deeper water. Lidar mapping systems, which use laser pulses to measure water depths from an airplane, are now available to map the nearshore lake morphology at meter-scale detail. Maps generated from the bathymetric data are used to define regions with smooth homogeneous substrate, regions with higher relief, and mixed regions with both smooth and rough relief. This morphologic information combined with sediment samples and direct bottom observations enable geologists to map areas with rougher relief composed of rock outcrop, boulders, and cobbles, as well as smooth regions covered with sand or mud. This information helps biologists, fishery managers, and ecologists visualize the lake floor in significant detail which promotes better fishery management, species protection, and habitat identification. These maps present the maps and discuss the geology of the six lake trout spawning sites mapped by the lidar system. Where the mapping approached land, aerial photography of the land is combined with the bathymetric data to help visualize the scale of the offshore features. Map and perspective views of Boulder Reef, Hog Island Reef, and Little Traverse Bay are shown on sheet 1, whereas map and perspective views of Trout and High Island Shoal, Gull Island Reef, and Dahlia Shoal are shown on sheet 2. Additional information, bathymetric data, imagery, and metadata are available online at http://geopubs.wr.usgs.gov/open-file/of03-120/.

Michigan, Wisconsin↗
USGS1998

Ecology of Siberian Taimen Hucho taimen in the Lake Baikal Basin

Taimen Hucho taimen historically inhabited most tributaries and littoral areas of Lake Baikal, in south central Siberia, where they supported subsistence and commercial fisheries. Logging, pollution, and overfishing have caused dramatic population declines or local extinction of most stocks. Most of what is known about this species has been published in eastern journals and therefore is not readily available to western scientists. New data collected during the 1980s and 1990s have been combined with other reports to provide an overview of the biology and life history of this species. Taimen are long-lived fish and can reach ages of 29 years and sizes up to 60 kg. Populations can either be strictly riverine or anadromous. Adults from both life histories ascend rivers in spring to spawn and feed, and less extensive migrations occur in fall to prey on spawning omul ( Coregonus autumnalis migratorius ). Principal food items for age 1 and 2 taimen are macroinvertebrates, but young taimen quickly become piscivorous at age 2 when they consume mainly black Baikal grayling ( Thymallus arcticus baicalensis ), and sculpins ( Taracottus kneri, Cottus kesslerij ). Males reach sexual maturity at ages 7 to 8 and later for females at ages 8 to 9. Average egg production per female was about 22,000 eggs. Parasite burdens are heavy but composed of few species and mediated by prey items consumed. This fish is a highly-specialized predator and plays an indispensable role in the structure of fish communities in mountains and foothills. Taimen conservation in the Baikal region is impossible without adoption and implementation of a dedicated rehabilitation program that includes the protection of remaining populations and habitat, and possibly introduction of hatchery-reared fish in selected areas where habitat remains, but parental stocks are low.

Journal of Great Lakes Research↗
USGS2007

Evidence of lake whitefish spawning in the Detroit River: Implications for habitat and population recovery

Historic reports imply that the lower Detroit River was once a prolific spawning area for lake whitefish ( Coregonus clupeaformis ) prior to the construction of the Livingstone shipping channel in 1911. Large numbers of lake whitefish migrated into the river in fall where they spawned on expansive limestone bedrock and gravel bars. Lake whitefish were harvested in the river during this time by commercial fisheries and for fish culture operations. The last reported landing of lake whitefish from the Detroit River was in 1925. Loss of suitable spawning habitat during the construction of the shipping channels as well as the effects of over-fishing, sea lamprey ( Petromyzon marinus ) predation, loss of riparian wetlands, and other perturbations to riverine habitat are associated with the disappearance of lake whitefish spawning runs. Because lake whitefish are recovering in Lake Erie with substantial spawning occurring in the western basin, we suspected they may once again be using the Detroit River to spawn. We sampled in the Detroit River for lake whitefish adults and eggs in late fall of 2005 and for lake whitefish eggs and fish larvae in 2006 to assess the extent of reproduction in the river. A spawning-ready male lake whitefish was collected in gillnets and several dozen viable lake whitefish eggs were collected with a pump in the Detroit River in November and December 2005. No lake whitefish eggs were found at lower river sites in March of 2006, but viable lake whitefish eggs were found at Belle Isle in the upper river in early April. Several hundred lake whitefish larvae were collected in the river during March through early May 2006. Peak larval densities (30 fish/1,000 m3 of water) were observed during the week of 3 April. Because high numbers of lake whitefish larvae were collected from mid- and downstream sample sites in the river, we believe that production of lake whitefish in the Detroit River may be a substantial contribution to the lake whitefish population in Lake Erie.

Michigan↗