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An inventory and typology of permanent floodplain lakes in the Mississippi alluvial valley: A first step to conservation planning

The alluvial valley of the Mississippi River is an extensive area harboring hundreds of lakes created by fluvial dynamics. These floodplain lakes are scattered throughout the valley and carved over thousands of years by shifting river courses and other hydro-fluvial processes associated with contemporary and prehistoric rivers. These lakes have significant ecological importance as they support a large component of North American biodiversity. We used remote sensing to catalog lakes, to characterize morphology, and to construct a typology via cluster analysis. We identified over 1,300 permanent lakes totaling over 100,000 ha. The lakes were classified into 12 types according to lake size, shape, depth, connectivity, inundation frequency, and surrounding landcover. We anticipate that biotic characteristics differ among the 12 types, but large-scale systematic analyses of biotic assemblages of floodplain lakes in the region are mostly absent. Our typology can provide the framework essential for organizing research to define water dynamics, water quality, and ecological conditions such as forests, mussel, fish, and avian communities to construct conservation plans. The typology encourages a large-scale view of the properties of floodplain lakes in the alluvial valley. It is a functional tool that can be used to begin identifying conservation and research needs, adapt monitoring and management programs, customize environmental programs, and use conservation resources more effectively to achieve large-scale management objectives.

Mississippi River

The 3D Elevation Program—Supporting Arkansas's economy

Introduction In recent years, Arkansas has coordinated with Federal and local partners to improve the quality and availability of high-resolution elevation data for the State. With high-quality elevation data, Arkansas can improve services offered to the public and within government, resulting in better quality of life, improved public safety, and higher return on investments. Elevation data are beneficial in numerous business activities, including agriculture and precision farming, flood risk management, geologic resource assessment and hazard mitigation, infrastructure and construction management, urban and regional planning, and natural resources conservation. Critical applications that meet the State’s management needs depend on light detection and ranging (lidar) data that provide a highly detailed three-dimensional (3D) model of the Earth’s surface and aboveground features. The 3D Elevation Program (3DEP) is managed by the U.S. Geological Survey in partnership with Federal, State, Tribal, U.S. territorial, and local agencies to acquire consistent lidar coverage at quality level 2 or better to meet the many needs of the Nation and Arkansas. This fact sheet shows the status of available and in-progress 3DEP baseline lidar data in Arkansas.

Arkansas

Estimating the impact of climate and vegetation changes on runoff risk across the Hawaiian landscape

In Hawai’i, ecosystem conservation practitioners are increasingly considering the potential ecohydrological benefits from applied conservation action to mitigate the degrading impacts of runoff on native and restored ecosystems. One determinant of runoff is excess rainfall events where rainfall rates exceed the infiltration capacity of soils. To help understand runoff risks, we calculated the probability of excess rainfall events across the Hawaiian landscape by comparing the probability distributions of projected rainfall frequency and land-cover-specific infiltration capacity. We characterized soil infiltration capacity based on different land cover types (bare soil, grasses, and woody vegetation) and compared them to the frequency of large rainfall events under current and future climate scenarios. We then mapped the potential risk of excess rainfall across the main Hawaiian Islands. Our results show that land cover type has a very large effect on runoff risk as excess rainfall conditions are 234% more likely in bare soil and 75% more likely in grasslands compared to woody forests and shrublands. In contrast, projected shifts in rainfall intensity by end-of-century show little impact on these probabilities and thus, the risk of runoff. This indicates that the probability of excess rainfall is primarily driven by differences in land cover and not by current or potential shifts in rainfall patterns across the Hawaiian landscape. The ability to estimate the risk of potentially ecologically and economically costly runoff based on changes of land cover is useful for managers focused on invasive species control and restoration planning, especially for native and endemic ecosystems unique to the State of Hawai’i.

Hawaii

SiteOpt: An open-source R-package for site selection and portfolio optimization

Conservation planning involves identifying and selecting actions to best achieve objectives for managing natural, social and cultural resources. Conservation problems are often high dimensional when specified as combinatorial or portfolio problems and when multiple competing objectives are considered at varying spatial and temporal scales. Although analytical techniques such as modern portfolio theory (MPT) have been developed to address these complex problems, open source computational platforms for executing these approaches are not readily available. We present a user-friendly R-package called SiteOpt for optimization of binary decisions while explicitly considering environmental or economic uncertainty and the risk tolerance of decision makers. We illustrate the package with spatially-explicit site selection problems (i.e. spatial conservation planning), including an option for divestment (i.e. selling assets), when accounting for future uncertainties in designing conservation areas. The tool is applicable to both spatial and non-spatial problems, such as budget allocation or species selection. Constraints for spatial design and spatial dependencies (e.g. connectivity among sites) can also be specified in SiteOpt. Users can optimize site selection based on two competing objectives by solving for the Nash bargaining solution. Importantly, by quantifying uncertainty and asset spatial correlation, a measure of risk can be included as one such objective to be traded off against portfolio benefits. Thus, SiteOpt can be used to explicitly manage risk in portfolio-based spatial optimization. This tool facilitates decisions in a variety of problem settings, including reserve selection, invasive species management, allocation of law enforcement activities for conservation, budget allocation and asset selection under uncertainty and risk.

Ecography

Developing a Vision: Incorporating Ecosystem Services into Decision Making - Proceedings of a Workshop

The production, location, use, and value of ecosystem services have become an important factor in resource management. Decisions relating to resource conservation and restoration, as well as development, require an understanding of the services provided by natural systems and the response of these systems to natural and human-induced change. Increased demands for development and the resulting pressures on ecosystem services have lent urgency to the need for an improved understanding of the value of natural capital. However, resource management decisions are often made without considering the importance and value of services resulting from natural systems.

Open-File Report

A method to assess longitudinal riverine connectivity in tropical streams dominated by migratory biota

1. One way in which dams affect ecosystem function is by altering the distribution and abundance of aquatic species. 2. Previous studies indicate that migratory shrimps have significant effects on ecosystem processes in Puerto Rican streams, but are vulnerable to impediments to upstream or downstream passage, such as dams and associated water intakes where stream water is withdrawn for human water supplies. Ecological effects of dams and water withdrawals from streams depend on spatial context and temporal variability of flow in relation to the amount of water withdrawn. 3. This paper presents a conceptual model for estimating the probability that an individual shrimp is able to migrate from a stream's headwaters to the estuary as a larva, and then return to the headwaters as a juvenile, given a set of dams and water withdrawals in the stream network. The model is applied to flow and withdrawal data for a set of dams and water withdrawals in the Caribbean National Forest (CNF) in Puerto Rico. 4. The index of longitudinal riverine connectivity (ILRC), is used to classify 17 water intakes in streams draining the CNF as having low, moderate, or high connectivity in terms of shrimp migration in both directions. An in-depth comparison of two streams showed that the stream characterized by higher water withdrawal had low connectivity, even during wet periods. Severity of effects is illustrated by a drought year, where the most downstream intake caused 100% larval shrimp mortality 78% of the year. 5. The ranking system provided by the index can be used as a tool for conservation ecologists and water resource managers to evaluate the relative vulnerability of migratory biota in streams, across different scales (reach-network), to seasonally low flows and extended drought. This information can be used to help evaluate the environmental tradeoffs of future water withdrawals. ?? 2008 John Wiley & Sons, Ltd.

Aquatic Conservation: Marine and Freshwater Ecosys

The 3D Elevation Program—Supporting the Kansas Economy

Introduction High-resolution elevation data for Kansas inform decision making to improve the State’s economy. Existing elevation data coverage is used to support State water planning initiatives, facilitate infrastructure management, and improve resilience to natural disasters. The expanding availability of current and more accurate elevation data helps better support natural resources conservation, agriculture and precision farming, flood risk management, water supply planning, infrastructure and construction management, and geologic resource assessment and hazard mitigation. Critical applications that meet the State’s management needs depend on light detection and ranging (lidar) data that provide a highly detailed three-dimensional (3D) model of the Earth’s surface and aboveground features. The 3D Elevation Program (3DEP) is managed by the U.S. Geological Survey (USGS) in partnership with Federal, State, Tribal, U.S. territorial, and local agencies to acquire consistent lidar coverage at quality level 2 or better to meet the many needs of the Nation and Kansas. The status of available and in-progress 3DEP baseline lidar data in Kansas is shown in figure 1. 3DEP baseline lidar data include quality level 2 or better, 1-meter or better digital elevation models, and lidar point clouds, and must meet the Lidar Base Specification version 1.2 ( https://www.usgs.gov/3dep/lidarspec ) or newer requirements. The National Enhanced Elevation Assessment identified user requirements and conservatively estimated that availability of lidar data would result in at least $14.41 million in new benefits annually to the State. The top nine Kansas business uses for 3D elevation data, which are based on the estimated annual conservative benefits of 3DEP, are shown in table 2.

Kansas

Spatial mapping and attribution of Wyoming wind turbines

This Wyoming wind-turbine data set represents locations of wind turbines found within Wyoming as of August 1, 2009. Each wind turbine is assigned to a wind farm. For each turbine, this report contains information about the following: potential megawatt output, rotor diameter, hub height, rotor height, land ownership, county, wind farm power capacity, the number of units currently associated with its wind farm, the wind turbine manufacturer and model, the wind farm developer, the owner of the wind farm, the current purchaser of power from the wind farm, the year the wind farm went online, and the status of its operation. Some attributes are estimates based on information that was obtained through the American Wind Energy Association and miscellaneous online reports. The locations are derived from August 2009 true-color aerial photographs made by the National Agriculture Imagery Program; the photographs have a positional accuracy of approximately ?5 meters. The location of wind turbines under construction during the development of this data set will likely be less accurate than the location of turbines already completed. The original purpose for developing the data presented here was to evaluate the effect of wind energy development on seasonal habitat used by greater sage-grouse. Additionally, these data will provide a planning tool for the Wyoming Landscape Conservation Initiative Science Team and for other wildlife- and habitat-related projects underway at the U.S. Geological Survey's Fort Collins Science Center. Specifically, these data will be used to quantify disturbance of the landscape related to wind energy as well as quantifying indirect disturbances to flora and fauna. This data set was developed for the 2010 project 'Seasonal predictive habitat models for greater sage-grouse in Wyoming.' This project's spatially explicit seasonal distribution models of sage-grouse in Wyoming will provide resource managers with tools for conservation planning. These specific data are being used for assessing the effect of disturbance resulting from wind energy development within Wyoming on sage-grouse populations.

Data Series

The 3D Elevation Program: Summary for South Dakota

Elevation data are essential to a broad range of applications, including forest resources management, wildlife and habitat management, national security, recreation, and many others. For the State of South Dakota, elevation data are critical for agriculture and precision farming, natural resources conservation, water supply and quality, infrastructure and construction management, flood risk management, geologic resource assessment and hazard mitigation, and other business uses. Today, high-density light detection and ranging (lidar) data are the primary sources for deriving elevation models and other datasets. Federal, State, tribal, and local agencies work in partnership to (1) replace data that are older and of lower quality and (2) provide coverage where publicly accessible data do not exist. A joint goal of State and Federal partners is to acquire consistent, statewide coverage to support existing and emerging applications enabled by lidar data. The National Enhanced Elevation Assessment (NEEA; Dewberry, 2011) evaluated multiple elevation data acquisition options to determine the optimal data quality and data replacement cycle relative to cost to meet the identified requirements of the user community. The evaluation demonstrated that lidar acquisition at quality level 2 for the conterminous United States and quality level 5 ifsar data for Alaska with a 6- to 10-year acquisition cycle provided the highest benefit/cost ratios.The new 3D Elevation Program (3DEP) initiative selected an 8-year acquisition cycle for the respective quality levels. 3DEP, managed by the U.S. Geological Survey, the Office of Management and Budget Circular A–16 lead agency for terrestrial elevation data, responds to the growing need for high-quality topographic data and a wide range of other 3D representations of the Nation’s natural and constructed features.

South Dakota

The 3D Elevation Program: summary for North Dakota

Elevation data are essential to a broad range of applications, including forest resources management, wildlife and habitat management, national security, recreation, and many others. For the State of North Dakota, elevation data are critical for agriculture and precision farming, natural resources conservation, water supply and quality, infrastructure and construction management, flood risk management, geologic resource assessment and hazard mitigation, and other business uses. Today, high-density light detection and ranging (lidar) data are the primary sources for deriving elevation models and other datasets. Federal, State, Tribal, and local agencies work in partnership to (1) replace data that are older and of lower quality and (2) provide coverage where publicly accessible data do not exist. A joint goal of State and Federal partners is to acquire consistent, statewide coverage to support existing and emerging applications enabled by lidar data. The National Enhanced Elevation Assessment evaluated multiple elevation data acquisition options to determine the optimal data quality and data replacement cycle relative to cost to meet the identified requirements of the user community. The evaluation demonstrated that lidar acquisition at quality level 2 for the conterminous United States and quality level 5 ifsar data for Alaska with a 6- to 10-year acquisition cycle provided the highest benefit/cost ratios.The 3D Elevation Program (3DEP) initiative selected an 8-year acquisition cycle for the respective quality levels. 3DEP, managed by the U.S. Geological Survey (USGS), the Office of Management and Budget Circular A–16 lead agency for terrestrial elevation data, responds to the growing need for high-quality topographic data and a wide range of other 3D representations of the Nation’s natural and constructed features.

North Dakota

Population momentum across vertebrate life histories

Population abundance is critically important in conservation, management, and demographic theory. Thus, to better understand how perturbations to the life history affect long-term population size, we examined population momentum for four vertebrate classes with different life history strategies. In a series of demographic experiments we show that population momentum generally has a larger effect on long-term population size for organisms with long generation times than for organisms with short generation times. However, patterns between population momentum and generation time varied across taxonomic groups and according to the life history parameter that was changed. Our findings indicate that momentum may be an especially important aspect of population dynamics for long-lived vertebrates, and deserves greater attention in life history studies. Further, we discuss the importance of population momentum in natural resource management, pest control, and conservation arenas. ?? 2006 Elsevier B.V. All rights reserved.

Ecological Modelling

Resource manager information needs regarding hydrologic regime shifts for the North Pacific Landscape Conservation

Landscape Conservation Cooperatives (LCCs) are a network of 22 public-private partnerships, defined by ecoregion, that share and provide science to ensure the sustainability of land, water, wildlife, and cultural resources in North America. LCCs were established by the U.S. Department of the Interior (DOI) in recognition of the fact that response to climate change must be coordinated on a landscape-level basis because important resources, ecosystem processes, and resource management challenges extend beyond most of the boundaries considered in current natural resource management. The North Pacific LCC (NPLCC) covers the range of the Pacific coastal temperate rainforest, including an area of 528,360 km 2 spanning 22 degrees of latitude from the Kenai Peninsula, Alaska, to Bodega Bay, California. The coverage area includes parts of four States, two Canadian provinces, and more than 100 Tribes and First Nation language groups. It extends from alpine areas at the crest of coastal mountains across subalpine, montane, and lowland forests to the nearshore marine environment. This wide range of latitudes and elevation zones; terrestrial, freshwater, and marine habitats; and complex jurisdictional boundaries hosts a diversity of natural resources and their corresponding management issues are equally diverse. As evidenced by the Science and Traditional Ecological Knowledge (S-TEK) Strategy guiding principles, identifying and responding to the needs of resource managers is key to the success of the NPLCC. To help achieve this goal of the NPLCC, the U.S. Geological Survey (USGS) has organized several workshops with resource managers and resource scientists to identify management information needs relevant to the priority topics identified in the S-TEK Strategy. Here, we detail the results from a first workshop to address the effects of changes in hydrologic regime on rivers, streams, and riparian corridors. The workshop focused on a subset of the full NPLCC geography and was structured to answer the following questions: What are the valued resources and services that may be affected by hydrologic regime changes in the region? What are the management goals for those resources? How is climate change anticipated to affect valued resources and goals? What adaptation strategies may managers use in response to anticipated changes in resources due to climate-related hydrologic change? What information is needed to inform and use management responses?

Open-File Report

Design of ecoregional monitoring in conservation areas of high-latitude ecosystems under contemporary climate change

Land ownership in Alaska includes a mosaic of federally managed units. Within its agency’s context, each unit has its own management strategy, authority, and resources of conservation concern, many of which are migratory animals. Though some units are geographically isolated, many are nevertheless linked by paths of abiotic and biotic flows, such as rivers, air masses, flyways, and terrestrial and aquatic migration routes. Furthermore, individual land units exist within the context of a larger landscape pattern of shifting conditions, requiring managers to understand at larger spatial scales the status and trends in the synchrony and spatial concurrence of species and associated suitable habitats. Results of these changes will determine the ability of Alaska lands to continue to: provide habitat for local and migratory species; absorb species whose ranges are shifting northward; and experience mitigation or exacerbation of climate change through positive and negative atmospheric feedbacks. We discuss the geographic and statutory contexts that influence development of ecological monitoring; argue for the inclusion of significant amounts of broad-scale monitoring; discuss the importance of defining clear programmatic and monitoring objectives; and draw from lessons learned from existing long-term, broad-scale monitoring programs to apply to the specific contexts relevant to high-latitude protected areas such as those in Alaska. Such areas are distinguished by their: marked seasonality; relatively large magnitudes of contemporary change in climatic parameters; and relative inaccessibility due to broad spatial extent, very low (or zero) road density, and steep and glaciated areas. For ecological monitoring to effectively support management decisions in high-latitude areas such as Alaska, a monitoring program ideally would be structured to address the actual spatial and temporal scales of relevant processes, rather than the artificial boundaries of individual land-management units. Heuristic models provide a means by which to integrate understanding of ecosystem structure, composition, and function, in the midst of numerous ecosystem drivers.

Alaska

Climate-induced shifts in grassland bird nesting phenology have implications for grassland management

Grasslands are among the most impacted ecosystems globally. In the midcontinent of North America, a > 80% loss of grasslands has made their conservation a major priority for resource managers. Grassland ecosystems evolved under periodic disturbances; consequently, grassland management often involves regular actions such as grazing, haying, or burning to maintain ecosystem integrity. The timing of such practices has direct implications on grassland ecology, agricultural economics, and survival and fecundity of grassland nesting birds (hereafter grassland birds). We conducted a meta-analysis on the nesting phenology of grassland birds throughout North America, focusing on nest-survival literature. We constructed a well-fitting model to predict median date of expected nest departure (hereafter fledge date) for grassland birds across the midcontinent. Predictions from our model demonstrate considerable spatial variation in median nesting phenology that is predictable using a spatially explicit spring phenology index. Median fledge dates were 8 or 13 days earlier in years of extreme weather conditions (dry or wet, respectively) than in years of average conditions. Species that generally nest in taller vegetation tended to have later median nest phenologies than those using shorter vegetation. Our results incorporate the most rigorous information available in the literature on nesting phenology of 36 grassland bird species and improve information available to managers about nesting phenology of grassland birds in the midcontinent of North America. Our predictions approximate the day when one-half of the nesting efforts would be complete for a given area within the midcontinent grasslands and can inform management and conservation decisions about the timing of management actions in grassland ecosystems.

Global Ecology and Conservation

Phosphorus runoff risk assessment in karstic regions of the U.S.

The Phosphorus (P) Index risk assessment tool has been widely adopted across the U.S. to identify and rank site vulnerability to P runoff as part of the Natural Resources Conservation Service (NRCS) nutrient management planning (NMP) process. However, limited success has been achieved in addressing the risk of P loss by subsurface flow pathways, despite its relative importance in certain areas of the U.S., particularly in those States dominated by karst terrain. Here we review how States with varying land areas classified as having karst features address the risk of P runoff during the NMP process. Indices adopted in Illinois and Indiana require setbacks (15 – 72 m widths) around surface karst features. The remaining States with karst, address the risk of P loss in NMP development rather than the application of a P Index. Given the spatially variable hydrogeologic properties of karst, technically rigorous field‐scale factors are unlikely to be developed in the near future.

Agricultural & Environmental Letters

Different data for different goals: Exploring trade-offs and synergies in the use of spatial data inputs to optimize conservation action in sagebrush ecosystems

Ecosystems worldwide continue to experience rapid rates of habitat and species loss. Management actions to conserve and restore functional habitats are needed to reduce these declines, but funding and resources for such actions are limited. Spatial conservation prioritization (SCP) can facilitate strategic decision-making for targeted conservation planning and delivery, but complexities arise when management objectives include multiple wildlife species and ecological or management constraints, all of which can be further complicated by data uncertainty and existing conservation plans. The Prioritizing Restoration of Sagebrush Ecosystems Tool (PReSET), an R package-based decision-support tool, supports strategic ecosystem management planning across the sagebrush biome by using SCP. We adapted PReSET to better address the needs of multiple wildlife species, evaluate the effects of different ecological or management constraints on conservation outcomes, assess the influence of data uncertainty, and integrate existing conservation plans. Specifically, we developed optimization problems to identify priority sagebrush protection and restoration across the state of Wyoming, USA, and evaluated the efficacy and trade-offs of various approaches to problem design. We evaluated trade-offs in targeting multiple species compared to a single species, including using greater sage-grouse as a potential umbrella species to benefit other sagebrush-dependent wildlife. We then evaluated multi-species protection and restoration problems aimed at minimizing the risks of inadequate connectivity, climate change, and restoration failure, and accounted for data uncertainty to assess relationships between risk aversion of managers and conservation outcomes. We also developed optimization problems within conservation areas identified by an existing sagebrush conservation plan to evaluate the efficacy of guiding local-scale conservation delivery within more broadly defined conservation areas. Our results demonstrate how SCP methods can leverage novel spatial data to develop targeted decision-support resources that can facilitate landscape conservation planning and improve management outcomes across a wide array of systems and species.

Wyoming

Infectious hematopoietic necrosis virus virological and genetic surveillance 2000–2012

Surveillance records of the acute RNA pathogen of Pacific salmonid fish infectious hematopoietic necrosis virus are combined for the first time to enable landscape-level ecological analyses and modeling. The study area is the freshwater ecosystems of the large Columbia River watershed in the U.S. states of Washington, Oregon, and Idaho, as well as coastal rivers in Washington and Oregon. The study period is 2000–2012, and records were contributed by all five resource management agencies that operate conservation hatcheries in the study area. Additional records from wild fish were collected from the National Wild Fish Health Survey, operated by the U.S. Fish and Wildlife Survey. After curation and normalization, the data set consists of 6766 records, representing 1146 sample sites and 15 different fish hosts. The virus was found in an average of 12.4% of records, and of these 66.2% also have viral genetic analysis available. This data set is used to conduct univariate ecological and epidemiological analyses and develop a novel hierarchical landscape transmission model for an aquatic pathogen.

Ecology

A new modeling approach to prioritize riparian restoration to reduce sediment loading in two Virginia river basins

Human impact, particularly land cover changes (e.g., agriculture, construction) increase erosion and sediment loading into streams. Benthic species are negatively affected by silt deposition that coats and embeds stream substrate. Given that riparian buffers are effective sediment filters, riparian restoration is increasingly implemented by conservation groups to protect stream habitats. Limited funding and a multitude of impaired streams warrant the need for cost-effective prioritization of potential restoration actions. We created a decision-support framework for conservation agencies and aquatic resource managers to prioritize riparian restoration efforts. Our framework integrates GIS data and field surveys into a statistical model to predict instream silt from estimates of upland soil loss and riparian filtration capacity. We focus specifically on prioritizing sites in upper sections of the Roanoke and Nottoway river basins (Virginia, US) based on observed records of Roanoke logperch ( Percina rex ), an imperiled sediment-sensitive species. Our statistical approach examines soil characteristics, land cover, precipitation, topography, and annual soil loss estimates from the empirically derived Revised Universal Soil Loss Equation, combined with land cover-based riparian filtration capacity as potential stream habitat predictors. We found riparian filtration capacity to be a significant predictor of silt cover, while precipitation was a significant predictor of embeddedness. Spatial scale was also a factor, in that spatial variance in silt cover and embeddedness was more accurately predicted at smaller spatial extents. Ultimately, our model can be used as a prioritization tool for mitigating high siltation areas, or for protecting low soil erosion areas.

North Carolina, Virginia