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At least 217 records · Page 12Linked to original sources

Asking nicely: Best practices for requesting data

Compiling disparate datasets into publicly available composite databases helps natural resource communities explore ecological trends and effectively manage across spatiotemporal scales. Though some studies have reported on the database construction phase, fewer have evaluated the data acquisition and distribution process. To facilitate future data sharing collaborations, Louisiana State University surveyed data providers and requestors to understand the characteristics of effective data requests and sharing. Data providers were largely U.S. natural resource agency personnel, and they reported that unclear data requests, privacy issues, and rigid timelines and formats were the greatest barriers toward providing data, but that they were motivated by improving science and collaboration. Data requestors identified challenges such as evolving needs, standardization issues, and insufficient resources (time and funding) as barriers to compiling data for these types of efforts. In a time of big data, open access, and collaboration, significant scientific advances can be made with effective requests and inclusion of data sets into larger and more powerful databases.

Ecological Indicators

Ecological changes in the nannoplankton community across a shelf transect during the onset of the Paleocene-Eocene Thermal Maximum

Warming and other environmental changes during the Paleocene‐Eocene thermal maximum (PETM) led to profound shifts in the composition and structure of nannoplankton assemblages. Here we analyze the nature of these changes in expanded records from the Cambridge‐Dorchester and Mattawoman Creek‐Billingsley Road cores in Maryland. These cores comprise part of a transect of five paleoshelf cores from Maryland and New Jersey. We integrate multivariate analysis of assemblage data with proxy data to revise understanding of the paleoecological affinities of key species. In particular, Discoaster and Fasciculithus are interpreted as thermophiles without adaptation to particular nutrient levels, while Hornibrookina is considered an opportunist adapted to highly variable nearshore environments. Together the cores show consistent margin‐wide changes across the onset of the PETM, including a pulse of preevent warming, possibly combined with lower salinity, high seasonality, or increased turbidity. The event itself was characterized by continued warming and eutrophication across the paleoshelf. The Maryland sites experienced higher environmental variability as a result of their proximity to large river systems.

Paleoceanography and Paleoclimatology

Rapid monitoring of the abundance and spread of exotic annual grasses in the western United States using remote sensing and machine learning

Exotic annual grasses (EAG) are one of the most damaging agents of change in western North America. Despite known socio-environmental effects of EAG there remains a need to enhance monitoring capabilities for better informing conservation and management practices. Here, we integrate field observations, remote sensing and climate data with machine-learning techniques to estimate and assess patterns of historical (1985–2019; R 2 = 0.86 ± 0.05; MAE = 6.7 ± 1.4%), present (2020), and future (2025–2040) EAG abundance (30-m) across much of the western United States. Trend analysis revealed that ∼8% and 1% of the landscape experienced significant rises and declines in historical EAG cover, respectively, with hotspots of invasion generally occurring near roads and along low-to-mid elevation gradients with warmer and drier conditions. Accurate simulations of the response of EAG to changing environmental conditions, disturbances and management treatments indicate that ecosystem resistance to invasion is largely controlled by long-term EAG abundance (surrogate for seed bank), time since and frequency of wildfire, and plant community interactions. Ecological thresholds associated with enhanced probabilities of wildfire occurrence and invasion rates indicate that relatively little (10%) EAG cover is needed to heighten these risks. Climate change is expected to push 8% of the landscape across invasion thresholds by 2040, impacting 6% of existing sage-grouse habitat, and we identify where fuel breaks may be placed to reduce wildfire risks and invasion. Spatially detailed, timely, and accurate depictions of past, present, and future EAG abundance are vital for the protection of life and property and the continued stewardship of sagebrush ecosystems.

California, Colorado, Idaho, Nevada, Oregon, Utah,

How to accelerate advances in ecological forecasting

Ecological forecasting offers critical insights for managing natural resources and safeguarding public well-being. Despite growing demand for these forecasts, progress is hindered by fragmented systems, redundant workflows, and limited interoperability. Drawing lessons from weather forecasting and recent successes like the NEON Ecological Forecasting Challenge, shared cyberinfrastructure is important for advancing ecological prediction. By adopting common standards, open-source tools, and scalable architectures, and fostering transdisciplinary collaboration, the ecological forecasting community can overcome technical and institutional barriers. Such investments could accelerate scientific understanding, improve forecast reliability, and empower decisionmakers to anticipate environmental change and respond effectively.

Eos, American Geophysical Union

Marsh rabbit mortalities tie pythons to the precipitous decline of mammals in the Everglades

To address the ongoing debate over the impact of invasive species on native terrestrial wildlife, we conducted a large-scale experiment to test the hypothesis that invasive Burmese pythons ( Python molurus bivittatus ) were a cause of the precipitous decline of mammals in Everglades National Park (ENP). Evidence linking pythons to mammal declines has been indirect and there are reasons to question whether pythons, or any predator, could have caused the precipitous declines seen across a range of mammalian functional groups. Experimentally manipulating marsh rabbits, we found that pythons accounted for 77% of rabbit mortalities within 11 months of their translocation to ENP and that python predation appeared to preclude the persistence of rabbit populations in ENP. On control sites, outside of the park, no rabbits were killed by pythons and 71% of attributable marsh rabbit mortalities were classified as mammal predations. Burmese pythons pose a serious threat to the faunal communities and ecological functioning of the Greater Everglades Ecosystem, which will probably spread as python populations expand their range.

Florida

Common insecticide disrupts aquatic communities: A mesocosm-to-field ecological risk assessment of fipronil and its degradates in U.S. streams

Insecticides in streams are increasingly a global concern, yet information on safe concentrations for aquatic ecosystems is sparse. In a 30-day mesocosm experiment exposing native benthic aquatic invertebrates to the common insecticide fipronil and four degradates, fipronil compounds caused altered emergence and trophic cascades. Effect concentrations eliciting a 50% response (EC 50 ) were developed for fipronil and its sulfide, sulfone, and desulfinyl degradates; taxa were insensitive to fipronil amide. Hazard concentrations for 5% of affected species derived from up to 15 mesocosm EC 50 values were used to convert fipronil compound concentrations in field samples to the sum of toxic units (∑TU Fipronils ). Mean ∑TU Fipronils exceeded 1 (indicating toxicity) in 16% of streams sampled from five regional studies. The Species at Risk invertebrate metric was negatively associated with ∑TU Fipronils in four of five regions sampled. This ecological risk assessment indicates that low concentrations of fipronil compounds degrade stream communities in multiple regions of the United States.

Science Advances

Factors of ecologic succession in oligotrophic fish communities of the Laurentian Great Lakes

Oligotrophic fish communities of the Great Lakes have undergone successive disruptions since the mid-1800s. Major contributing factors have been intensive selective fisheries, extreme modification of the drainage, invasion of marine species, and progressive physical–chemical changes of the lake environments. Lake Ontario was the first to be affected as its basin was settled and industrialized earliest, and it was the first to be connected by canals to the mid-Atlantic where the alewife ( Alosa pseudoharengus ) and sea lamprey ( Petromyzon marinus ) which ultimately became established in the Great Lakes were abundant. Oligotrophic fish communities were successively disrupted in Lakes Erie, Huron, Michigan, and Superior as the affects of population growth, industrialization, and marine invaders spread upward in the Laurentian drainage.The degree and sequence of response of families offish and species within families differed for each factor, but the sequence of change among families and species has been the same in response to each factor as it affected various lakes at different times. The ultimate result of the disruption of fish communities has been a reduction of productivity of oligotrophic species that ranges from extreme in Lake Ontario to moderate in Lake Superior, and which has reached a state of instability and rapid change in the upper three Great Lakes by the rnid-1900s similar to the situation in Lake Ontario in the mid-1800s. Since oligotrophic species (primarily salmonines, coregonines, and deepwater cottids) are the only kinds of fish that fully occupied the entire volume of the deepwater Great Lakes (Ontario, Huron, Michigan, and Superior), the fish biomass of these lakes has been reduced as various species declined or disappeared. In Lake Erie, which is shallow, and in the shallow bays of the deep lakes, oligotrophic species were replaced by mesotrophic species, primarily percids, which have successively increased and declined. All oligotrophic species are greatly reduced or extinct in lakes Ontario and Erie, and are in various stages of decline in lakes Huron, Michigan, and Superior, from greatest to least, respectively. The percids appear to be near the end of their sequence of succession in lakes Erie, Ontario, and Huron (primarily Saginaw Bay) where only the yellow perch ( Perca flavescens ) remains abundant. The yellow perch appears to be on the brink of decline in Lake Erie, which has been more severely influenced by water quality change than the other lakes.

Journal of the Fisheries Research Board of Canada

Top 40 priorities for science to inform conservation and management policy in the United States

To maximize the utility of research to decisionmaking, especially given limited financial resources, scientists must set priorities for their efforts. We present a list of the top 40 high-priority, multidisciplinary research questions directed toward informing some of the most important current and future decisions about management of species, communities, and ecological processes in the United States. The questions were generated by an open, inclusive process that included personal interviews with decisionmakers, broad solicitation of research needs from scientists and policymakers, and an intensive workshop that included scientifically oriented individuals responsible for managing and developing policy related to natural resources. The process differed from previous efforts to set priorities for conservation research in its focus on the engagement of decisionmakers in addition to researchers. The research priorities emphasized the importance of addressing societal context and exploration of trade-offs among alternative policies and actions, as well as more traditional questions related to ecological processes and functions.

BioScience

Estimation of species richness and parameters reflecting community dynamics using data from ecological monitoring programs

Although many ecological monitoring programs are now in place, the use of resulting data to draw inferences about changes in biodiversity is problematic. The difficulty arises because of the inability to count all animals present in any sampled area. This inability results not only in underestimation of species richness but also in potentially misleading comparisons of species richness over time and space. We recommend the use of probabilistic estimators for estimating species richness and related parameters (e.g., rate of change in species richness, local extinction probability, local turnover, local colonization) when animal detection probabilities are <1. We illustrate these methods using data from the North American Breeding Bird Survey obtained along survey routes in Maryland. We also introduce software to implement these estimation methods.

Book chapter

The ecology of hydric hammocks: a community profile

This community profile is one in a series of Fish and Wildlife Service publications compiled to provide a state-of-knowledge synthesis of scientific information and literature on various coastal habitats. The subject of this profile is the hydric hammock, a distinctive type of forested wetland occurring at low elevations along the gulf coast of Florida from Aripeka to St. Marks and at various inland sites in Florida. Relatively little research has been conducted in hydric hammocks, and no thorough effort has been made previously to define this community. Consequently, no consensus has existed about the extent and nature of this community; some published works and active researchers have differed in their judgments about it; and the entity sometimes is ignored and often is lumped with other types of mixed hardwood forests. The purpose of this profile is to establish or clarify an identification and understanding of the hydric-hammock community. Information for the profile was gathered from published and unpublished literature, from persona 1 communication with many technical experts, and from our own fie 1 d experience. The profile includes some new data gathered in the field for the purpose of defining this community. It is hoped that the content and format of the profile will be useful to a broad spectrum of users, including other scientists, students, resource managers and planners, teachers, and interested citizens. The profile includes structural and functional aspects of the community: its physical setting, plant and animal composition and dynamics, interactions of its flora and fauna, and its relationships with other communities.

Florida

A matter of scale: damage from Hurricane Hugo (1989) to U.S. Virgin Islands reefs at the colony, community and whole reef level

Studies at Buck Island Reef National Monument (St. Croix) and Virgin Islands National Park (St. John) by scientists in the U.S. National Park Service Coral Reef Assessment Program re- vealed the effects of Humcane Hugo on individual coral species, community parameters, and overall reef structure. Effects of the storm varied with depth, coral species, location relative to the storm path, character of the pre-storm communities, and ecological history. Live coral cover, initially less than 30% at all sites, dropped by 40 to 73%. Cover by the dominant species Montastrea annularis de- clined about 35% on the St. John reefs. At Buck Island, Acropora palmata cover, already reduced from 85% to 5% by white band disease and storms, fell to 0.8% after Hugo. Some areas on the south side of Buck Island were reduced to rubble pave- ment while other areas escaped serious damage. Data from cores at Buck Island reveal the influence of wave energy and storm frequency on overall reef character. Patchiness and variation in the responses of different species, zones, and entire reefs to the storm suggest that assessment of long-term trends in reef structure and composition requires analysis of changes at permanent study sites distributed over large areas.

Conference Paper

Experimental enhancement of pickleweed, Suisun Bay, California

As mitigation for habitat impacted by the expansion of a pier on Suisun Bay, California, two vehicle parking lots (0.36 ha and 0.13 ha) were restored by being excavated, graded, and contoured using dredged sediments to the topography or elevation of nearby wetlands. We asked if pickleweed (Sarcocornia pacifica L, [Amaranthaceae]) colonization could be enhanced by experimental manipulation on these new wetlands. Pickleweed dominates ecologically important communities at adjacent San Francisco Bay, but is not typically dominant at Suisun Bay probably because of widely fluctuating water salinity and is outcompeted by other brackish water plants. Experimental treatments (1.0-m2 plots) included mulching with pickleweed cuttings in either the fall or the spring, tilling in the fall, or applying organic enrichments in the fall. Control plots received no treatment. Pickleweed colonization was most enhanced at treatment plots that were mulched with pickleweed in the fall. Since exotic vegetation can colonize bare sites within the early phases of restoration and reduce habitat quality, we concluded that mulching was most effective in the fall by reducing invasive plant cover while facilitating native plant colonization.

California Fish and Game

Chapter 11: Management considerations

We conducted an ecoregional assessment of sagebrush ( Artemisia spp. ) ecosystems in the Wyoming Basins and surrounding regions (WBEA) to determine broad-scale species-environmental relationships. Our goal was to assess the potential influence from threats to the sagebrush ecosystem on associated wildlife through the use of spatially explicit occurrence and abundance models. These models were developed using information from field surveys conducted along gradients of vegetation productivity and human disturbance integrated with spatial datasets delineating land cover, topography, and human land use in the WBEA area. Our evaluation included all sagebrush-associated wildlife species across multiple taxa whose habitat requirements and distributions were appropriate for modeling and interpretation at the broad scales of this assessment. Dominant land uses were included in delineating the human footprint. Although overall levels of the cumulative human footprint were generally low across the WBEA area, oil and gas activities have decreased the amount of shrubland habitats and increased fragmentation within development regions over the last century. At the scale of this assessment, the influence of humans was primarily expressed as an indirect function through actions that altered or reduced available habitat. We identified 65 plant species of conservation concern; 28 of 40 vertebrate species associated with sagebrush were species of concern in at least one state. We modeled environmental relationships for 15 wildlife species from data collected from surveys conducted in 2005 and 2006 designed to sample multiple species and taxa along land cover and land use gradients across the WBEA area. Occurrence of 3 species was negatively influenced by human features; anthropogenic features were a positive influence for 3 species, 8 had a mixed response, and 1 had no measurable relationship. Sagebrush land cover, considered in all wildlife models, was important to most species but differed among species in the proportion of sagebrush required and at what spatial extent. For most species examined, the spatial extent at which sagebrush cover influenced the probability of occupancy was much larger than an individual’s home range size. Exotic plants were strongly associated with human features, particularly roads, which may function as linear vectors to facilitate spread of exotic plants across the WBEA area. We used coarse-grained spatial and thematic data because of the large spatial extent (350,000 km 2 ) of the WBEA area and the need for a consistent land cover map for the region. Distributions of species occurrence or abundance mapped in this assessment need to be corroborated with information on population demographics. In addition, our results should be interpreted relative to assumptions inherent in broad-scale ecoregional assessments. Our assessment provides managers with extensive and detailed maps of occurrence and abundance, allowing for status assessments of native species, diversity and richness, natural communities, and ecological systems present within the Wyoming Basins.

Wyoming

Representation of ecological systems within the protected areas network of the continental United States

If conservation of biodiversity is the goal, then the protected areas network of the continental US may be one of our best conservation tools for safeguarding ecological systems (i.e., vegetation communities). We evaluated representation of ecological systems in the current protected areas network and found insufficient representation at three vegetation community levels within lower elevations and moderate to high productivity soils. We used national-level data for ecological systems and a protected areas database to explore alternative ways we might be able to increase representation of ecological systems within the continental US. By following one or more of these alternatives it may be possible to increase the representation of ecological systems in the protected areas network both quantitatively (from 10% up to 39%) and geographically and come closer to meeting the suggested Convention on Biological Diversity target of 17% for terrestrial areas. We used the Landscape Conservation Cooperative framework for regional analysis and found that increased conservation on some private and public lands may be important to the conservation of ecological systems in Western US, while increased public-private partnerships may be important in the conservation of ecological systems in Eastern US. We have not assessed the pros and cons of following the national or regional alternatives, but rather present them as possibilities that may be considered and evaluated as decisions are made to increase the representation of ecological systems in the protected areas network across their range of ecological, geographical, and geophysical occurrence in the continental US into the future.

PLoS ONE

Grass buffers for playas in agricultural landscapes: A literature synthesis

We summarize current knowledge about grass buffers for protecting small, isolated wetlands in agricultural contexts, including information relevant to protecting playas from runoff containing sediments, nutrients, pesticides, and other contaminants, and information on how buffers may affect densities and productivity of grassland birds. Land-uses surrounding the approximately 60,000 playas within the Playa Lakes Region (PLR), including intensive agriculture, feedlots, and oil extraction, can contribute to severe degradation of playas. Farming and grazing can lead to significant sedimentation in nearby playas, eliminating their ability to hold water, support the region&rsquo;s biodiversity, or adequately recharge aquifers. Contaminants further degrade habitats and threaten the water quality of underlying aquifers, including the Ogallala Aquifer. Grass buffers hold promise as a management tool to reduce the amount of sediments and contaminants from agricultural runoff that enters playas. Effective buffer width is determined by acceptable sediment-reduction levels, potential water flow and velocity, landscape and soil variables, buffer species, and vegetation structure. Various models have been developed to predict buffer effectiveness; however, most of these models, including those provided by the Natural Resource Conservation Service (NRCS), remain unvalidated. The majority of buffer-effectiveness literature is based on simulated conditions in experimental trays or plots; no published studies of buffer design or effectiveness specifically address playas. Nonetheless, some general patterns have emerged regarding buffer design/effectiveness. Buffers 10&ndash;60 m wide are generally considered adequate for trapping most sediments, although in some cases buffers need to be >200 m. The U.S. Fish and Wildlife Service Partners for Wildlife Program in the Southern High Plains recommend a buffer width of ~33 m planted with a diverse mix of native shortgrasses and mixed grasses as a starting point. Most dissolved contaminants, however, are removed from runoff only when they infiltrate the soil, where microbes or other processes can break down or sequester contaminants. Promoting runoff infiltration requires wider buffers with denser stem densities than those required for filtering sediments, which may result in hydrological changes in playas. Ultimately, the balance between runoff and infiltration determines whether or not water eventually reaches a given basin. Long-term buffer effectiveness requires regular maintenance, including excavation to remove overburdens of sediments, repairing vegetation damage, and removing over-mature vegetation or invasions of noxious weeds. Buffers may not be enough to protect playas; best management practices (BMPs; e.g., conservation tillage, contour tilling, and mulching herbicides into soil after application) that diminish soil erosion and contaminant runoff also may be necessary. Nutrient loads in runoff can be minimized by balancing nutrient input with nutrient requirements for livestock and crops. Pesticide application practices also require careful evaluation. Mowing or grazing rather than use of herbicides offer alternatives for suppressing invasive or undesirable plant species in buffers. Future research should entail multiple-scale approaches at regional, wetland-complex, and individual watershed scales. Information needs include direct measures of buffer effectiveness in &lsquo;real-world&rsquo; systems, refinement and field tests of buffer-effectiveness models, how buffers may affect floral and faunal communities of playas, and basic ecological information on playa function and playa wildlife ecology. Understanding how wildlife communities respond to patch size and habitat fragmentation is crucial for addressing questions regarding habitat quality of grass buffers in playa systems.

Open-File Report

Mapping vegetation communities in Ozark National Scenic Riverways: final technical report to the National Park Service

Vegetation communities were mapped at two levels in Ozark National Scenic Riverways (ONSR) usign a hybrid combination of statistical methods and photointerpretation. The primary map includes 49 cover classes, including 24 cleasses that relate to vegetation associations currenly described by the United States National Vegetation Classification Standard (USNVC: The Nature Conservancy, 1994a). The remaining types include cultural features, ruderal communities on abandoned agricultural lands, and non-vegetated classes. Overall map classification accuarcy is 63 percent. The secondary mapping level aggregates communities with similar appearance and ecologically related associations into Community Types. The resultant 33-class Community Type map has an overall classification accuracy of 77 percent and identified groups of communities based on resource management goals within the park. Important additional products include 1) a general probability map for all vegetation associations, which can be used to assess final classification certainty, and 2) individual probability maps for each association, which can be used to identify areas that have a high likelihood of supporting a given type, beyond where that type was identified in the final map products. Other secondary map products include data layers derived from primary color-infrared imagery, secondary imagery data and digital elevation models. A field key and photo guide to associations and complete community descriptions were produced, along with a photo guide of fuel conditions. Wildland fuels data were used to generate a fuels map based upon Anderson's fuels models (1982).

Missouri

Challenges and solutions for automated avian recognition in aerial imagery

Remote aerial sensing provides a non-invasive, large geographical-scale technology for avian monitoring, but the manual processing of images limits its development and applications. Artificial Intelligence (AI) methods can be used to mitigate this manual image processing requirement. The implementation of AI methods, however, has several challenges: (1) imbalanced (i.e., long-tailed) data distribution, (2) annotation uncertainty in categorization, and (3) dataset discrepancies across different study sites. Here we use aerial imagery data of waterbirds around Cape Cod and Lake Michigan in the United States to examine how these challenges limit avian recognition performance. We review existing solutions and demonstrate as use cases how methods like Label Distribution Aware Marginal Loss with Deferred Re-Weighting, hierarchical classification, and FixMatch address the three challenges. We also present a new approach to tackle the annotation uncertainty challenge using a Soft-fine Pseudo-Label methodology. Finally, we aim with this paper to increase awareness in the ecological remote sensing community of these challenges and bridge the gap between ecological applications and state-of-the-art computer science, thereby opening new doors to future research.

Remote Sensing in Ecology and Conservation