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River-corridor habitat dynamics, Lower Missouri River

Intensive management of the Missouri River for navigation, flood control, and power generation has resulted in substantial physical changes to the river corridor. Historically, the Missouri River was characterized by a shifting, multithread channel and abundant unvegetated sandbars. The shifting channel provided a wide variety of hydraulic environments and large areas of connected and unconnected off-channel water bodies. Beginning in the early 1800s and continuing to the present, the channel of the Lower Missouri River (downstream from Sioux City, Iowa) has been trained into a fast, deep, single-thread channel to stabilize banks and maintain commercial navigation. Wing dikes now concentrate the flow, and revetments and levees keep the channel in place and disconnect it from the flood plain. In addition, reservoir regulation of the Missouri River upstream of Yankton, South Dakota, has substantially changed the annual hydrograph, sediment loads, temperature regime, and nutrient budgets. While changes to the Missouri River have resulted in broad social and economic benefits, they have also been associated with loss of river-corridor habitats and diminished populations of native fish and wildlife species. Today, Missouri River stakeholders are seeking ways to restore some natural ecosystem benefits of the Lower Missouri River without compromising traditional economic uses of the river and flood plain.

Fact Sheet

Surface-Water Quantity and Quality of the Upper Milwaukee River, Cedar Creek, and Root River Basins, Wisconsin, 2004

The U.S. Geological Survey, in cooperation with the Southeastern Wisconsin Regional Planning Commission (SEWRPC), collected discharge and water-quality data at nine sites in previously monitored areas of the upper Milwaukee River, Cedar Creek, and Root River Basins, in Wisconsin from May 1 through November 15, 2004. The data were collected for calibration of hydrological models that will be used to simulate how various management strategies will affect the water quality of streams. The data also will support SEWRPC and Milwaukee Metropolitan Sewerage District (MMSD) managers in development of the SEWRPC Regional Water Quality Management Plan and the MMSD 2020 Facilities Plan. These management plans will provide a scientific basis for future management decisions regarding development and maintenance of public and private waste-disposal systems. In May 2004, parts of the study area received over 13 inches of precipitation (3.06 inches is normal). In June 2004, most of the study area received between 7 and 11 inches of rainfall (3.56 inches is normal). This excessive rainfall caused flooding throughout the study area and resultant high discharges were measured at all nine monitoring sites. For example, the mean daily discharge recorded at the Cedar Creek site on May 27, 2004, was 2,120 cubic feet per second. This discharge ranked ninth of the largest 10 mean daily discharges in the 75-year record, and was the highest discharge recorded since March 30, 1960. Discharge records from continuous monitoring on the Root River Canal near Franklin since October 1, 1963, indicated that the discharge recorded on May 23, 2004, ranked second highest on record, and was the highest discharge recorded since March 4, 1974. Water-quality samples were taken during two base-flow events and six storm events at each of the nine sites. Analysis of water-quality data indicated that most concentrations of dissolved oxygen, biological oxygen demand, fecal coliform bacteria, chloride, suspended solids, nitrate plus nitrite nitrogen, ammonia nitrogen, Kjeldahl nitrogen, total phosphorus, dissolved orthophosphorus, total copper, particulate mercury, dissolved mercury, particulate methylmercury, dissolved methylmercury, and total zinc were below U.S. Environmental Protection Agency (USEPA) and State of Wisconsin water-quality standards at all sites, with the exception of dissolved oxygen at the Kewaskum, Farmington, Root River Canal, Root River Racine, and Root River Mouth sites. Each of these sites had from several days to several weeks of daily average dissolved oxygen concentrations below the 5 milligrams per liter State of Wisconsin standard for aquatic life. The lowest dissolved oxygen concentrations were measured at the heavily urbanized Root River Mouth site in downtown Racine, Wisconsin, where elevated concentrations of ammonia may have contributed to oxygen consumption during oxidation of ammonia to nitrate. Additionally, the maximum concentrations of copper in several Root River samples exceeded draft USEPA Ambient Water-Quality Criteria (U.S. Environmental Protection Agency, 2003) for acute toxicity to several species of aquatic organisms. Substantial water-quality changes were not correlated with hydrologic changes at any of the nine sites. Base-flow water-quality was generally indistinguishable from that sampled during storm events. The sparsely developed upper Milwaukee River and Cedar Creek Basins had relatively low ranges of contamination for all laboratory-reported parameters. For all nine sites, the highest reported concentrations of chloride (216 mg/L), total phosphorus (0.627 mg/L), ortho-phosphorus (0.136 mg/L), nitrate plus nitrate (9.32 mg/L), and copper (38 ?g/L) were reported for samples collected at the Root River Canal site. The highest concentrations of fecal coliforms (3,600 colonies per 100 mL) and Escherichia coli (2,300 colonies per 100 mL) were reported in samples collected at Kewaskum. The highest concentrations of s

Open-File Report

Detection of environmental DNA of bigheaded carps in samples collected from selected locations in the St. Croix River and in the Mississippi River

The use of molecular methods, such as the detection of environmental deoxyribonucleic acid (eDNA), have become an increasingly popular tool in surveillance programs that monitor for the presence of invasive species in aquatic systems. One early application of these methods in aquatic systems was surveillance for DNA of Asian carps (specifically bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix) in water samples taken from the Chicago Area Waterway System. The ability to identify DNA of a species in an environmental sample presents a potentially powerful tool because these sensitive analyses can presumably detect the presence of DNA in water even when the species is not abundant or are difficult to catch or monitor with traditional gear. Prior to research presented in this report, an initial eDNA surveillance effort was completed in selected locations in the Upper Mississippi and St. Croix Rivers in 2011 after the capture of a bighead carp in the St. Croix River near Prescott, WI. Data presented in this report were developed to duplicate the 2011 monitoring results from the Upper Mississippi and St. Croix Rivers and to provide critical insight into the technique to inform future work in these locations. We specifically sought to understand the potential confounding effects of other pathways of eDNA movement (e.g., fish-eating birds, watercraft) on the variation in background DNA by collecting water samples from (1) sites within the St. Croix River and the upper Mississippi River where the DNA of silver carp was previously detected, (2) sites considered to be free of Asian carp, and (3) a site known to have a large population of Asian carp. We also sought to establish a baseline Asian carp eDNA signature to which future eDNA sampling efforts could be compared. All samples taken as part of this effort were processed using conventional polymerase chain reaction (PCR) according to procedures outlined in the U.S. Army Corps of Engineers Quality Assurance Project Plan with minor deviations designed to enhance the rigor of our data. Presence of DNA in PCR-positive samples was confirmed by Sanger sequencing (forward and reverse) and sequences were considered positive only if sequences (forward and reverse) of ≥150 base pairs had a match of ≥95% to those of published sequences for bighead carp or silver carp. The DNA of bighead carp and silver carp was not detected in environmental samples collected above and below St. Croix Falls Dam on the St. Croix River, above and below the Coon Rapids Dam and below Lock and Dam 1 on the Upper Mississippi River, and from two negative control lakes, Square Lake and Lake Riley. The DNA of silver carp was detected in environmental samples collected below Lock and Dam 19 at Keokuk, Iowa, a reach of the river with high silver carp abundance. The portion (68%) of environmental samples taken below Lock and Dam 19 that were determined to contain the DNA of silver carp was similar to that reported in the scientific literature for other abundant species. The DNA of bighead carp, however, was not detected in environmental samples collected below Lock and Dam 19, a reach of the river known to have bighead carp. Previous reported detections of the DNA of silver carp in samples collected in 2011 were not replicated in this study. Additional analyses are planned for the DNA extracted from the samples collected in 2012. Those analyses may provide additional information regarding the lack of amplification of bighead carp DNA and the lengths of the sequences of silver carp DNA present in samples taken below Lock and Dam 19. These additional analyses may help inform the use of eDNA monitoring in large, complex systems like the Mississippi River.

Minnesota, Wisconsin

Real-Time River Channel-Bed Monitoring at the Chariton and Mississippi Rivers in Missouri, 2007-09

Scour and depositional responses to hydrologic events have been important to the scientific community studying sediment transport as well as potential effects on bridges and other hydraulic structures within riverine systems. A river channel-bed monitor composed of a single-beam transducer was installed on a bridge crossing the Chariton River near Prairie Hill, Missouri (structure L-344) as a pilot study to evaluate channel-bed change in response to the hydrologic condition disseminated from an existing streamgage. Initial results at this location led to additional installations in cooperation with the Missouri Department of Transportation at an upstream Chariton River streamgage location at Novinger, Missouri (structure L-534) and a Mississippi River streamgage location near Mehlville, Missouri (structures A-1850 and A-4936). In addition to stage, channel-bed elevation was collected at all locations every 15 minutes and transmitted hourly to a U.S. Geological Survey database. Bed elevation data for the Chariton River location at Novinger and the Mississippi River location near Mehlville were provided to the World Wide Web for real-time monitoring. Channel-bed data from the three locations indicated responses to hydrologic events depicted in the stage record; however, notable bedforms apparent during inter-event flows also may have affected the relation of scour and deposition to known hydrologic events. Throughout data collection periods, Chariton River locations near Prairie Hill and Novinger reflected bed changes as much as 13 feet and 5 feet. Nearly all of the bed changes correlated well with the hydrographic record at these locations. The location at the Mississippi River near Mehlville indicated a much more stable channel bed throughout the data collection period. Despite missing data resulting from damage to one of the river channel-bed monitors from ice accumulation at the upstream nose of the bridge pier early in the record, the record from the downstream river channel-bed monitor demonstrated a good correlation (regardless of a 7 percent high bias) between bedform movement and the presence of bedforms surrounding the bridge as indicated by coincident bathymetric surveys using multibeam sonar.

Scientific Investigations Report

Low-flow characteristics and profiles for the Rocky River in the Yadkin-Pee Dee River basin, North Carolina, through 2002

An understanding of the magnitude and frequency of low-flow discharges is an important part of protecting surface-water resources and planning for municipal and industrial economic expansion. Low-flow characteristics are summarized for 12 continuous-record gaging stations and 44 partial-record measuring sites in the Rocky River basin in North Carolina. Records of discharge collected through the 2002 water year at continuous-record gaging stations and through the 2001 water year at partial-record measuring sites were used. Flow characteristics included in the summary are (1) average annual unit flow; (2) 7Q10 low-flow discharge, the minimum average discharge for a 7-consecutive-day period occurring, on average, once in 10 years; (3) 30Q2 low-flow discharge; (4) W7Q10 low-flow discharge, which is similar to 7Q10 discharge but is based only on flow during the winter months of November through March; and (5) 7Q2 low-flow discharge. The Rocky River basin drains 1,413 square miles (mi 2 ) of the southern Piedmont Province in North Carolina. The Rocky River is about 91 miles long and merges with the Yadkin River in eastern Stanly County to form the Pee Dee River, which discharges into the Atlantic Ocean in South Carolina. Low-flow characteristics compiled for selected sites in the Rocky River basin indicated that the potential for sustained base flows in the upper half of the basin is relatively higher than for streams in the lower half of the basin. The upper half of the basin is underlain by the Charlotte Belt, where streams have been identified as having moderate potentials for sustained base flows. In the lower half of the basin, many streams were noted as having little to no potential for sustained base flows. Much of the decrease in base-flow potential is attributed to the underlying rock types of the Carolina Slate Belt. Of the 19 sites in the basin having minimal (defined as less than 0.05 cubic foot per second) or zero 7Q10 discharges, 18 sites are located in the lower half of the basin underlain by the Carolina Slate Belt. Assessment of these 18 sites indicates that streams that have drainage areas less than about 25 square miles are likely to have minimal or zero 7Q10 discharges. No drainage-area threshold for minimal or zero 7Q10 discharges was identified for the upper half of the basin, which is underlain by the Charlotte Belt. Tributaries to the Rocky River include the West Branch Rocky River (22.8 mi 2 ), Clarke Creek (28.2 mi 2 ), Mallard Creek (41.2 mi 2 ), Coddle Creek (78.8 mi 2 ), Reedy Creek (43.0 mi 2 ), Irish Buffalo/Coldwater Creeks (110 mi 2 ), Dutch Buffalo Creek (99 mi 2 ), Long Creek (200 mi 2 ), Richardson Creek (234 mi 2 ), and Lanes Creek (135 mi 2 ). In the 20-mile reach upstream from the mouth (about 22 percent of the river length), the drainage area increases by 648 mi 2 , or about 46 percent of the total drainage area as a result of the confluences with Long Creek, Richardson Creek, and Lanes Creek. Low-flow discharge profiles for the Rocky River include 7Q10, 30Q2, W7Q10, and 7Q2 discharges in a continuous profile with contributions from major tributaries included. At the gaging stations above Irish Buffalo Creek and near Stanfield, the 7Q10 discharges are 25.2 and 42.3 cubic feet per second, corresponding to 0.09 and 0.07 cubic feet per second per square mile, respectively. At the gaging station near Norwood, the 7Q10 discharge is 45.8 cubic feet per second, equivalent to 0.03 cubic foot per second per square mile. Low-flow discharge profiles reflect the presence of several major flow diversions in the reaches upstream from Stanfield and an apparent losing reach between the continuous-record gaging stations near Stanfield and Norwood, North Carolina.

North Carolina

Seasonal Variability and Effects of Stormflow on Concentrations of Pesticides and their Degradates in Kisco River and Middle Branch Croton River Surface Water, Croton Reservoir System, New York, May 2000-February 2001

Seven herbicides (2,4-D, 2,4-D methyl ester, bromacil, dicamba, diuron, imazaquin, and sulfometuron), four insecticides (carbaryl, diazinon, imidacloprid, and malathion), two fungicides (metalaxyl and myclobutanil), and caffeine (an indicator of wastewater) were detected in at least one sample from the Kisco River at concentrations above 0.1 ug/L (micrograms per liter). Four of these compounds - 2,4-D, 2,4-D methyl ester, dicamba, and metalaxyl - were detected in at least one sample from the Kisco River at a concentration above 1 ug/L. Only three herbicides (2,4-D, imazethapyr, and prometon) and caffeine were detected at concentrations above 0.1 ug/L in one or more of the Middle Branch Croton River samples, and no compounds were detected above 0.4 ug/L in Middle Branch Croton River samples. No samples contained concentrations of pesticides that exceeded human health-based water-quality standards. However, samples from the Kisco River contained four insecticides (carbaryl, chlorpyrifos, diazinon, and malathion) and one herbicide (2,4-D) in concentrations that exceeded water-quality criteria for the protection of aquatic life. Aquatic-life protection criteria were generally exceeded only in stormflow samples collected in June, September, and December 2000. No samples from the Middle Branch Croton River contained target compounds that exceeded water-quality criteria for the protection of aquatic life. Pesticide concentrations were generally higher, and the numbers of compounds generally larger in samples from the Kisco River than in samples from the Middle Branch Croton River, probably because the Kisco River watershed has a greater population density and is more extensively developed. The highest concentrations of most compounds in both streams were detected in stormflow samples collected in June, September, and December 2000. This indicates that stormflow sampling is essential in assessments of pesticide occurrence in streams that drain developed lands. The lowest concentrations of most compounds at both sites were detected in baseflow samples collected from October 2000 through February 2001, although the concentrations of several compounds increased substantially during stormflows at the Kisco River site in November and December, 2000.

Water-Resources Investigations Report

A river-quality assessment of the upper White River, Indiana

This report attempts to interrelate the physical, chemical, biological, esthetic, and cultural aspects of the upper White River (above Centerton, Ind.) by assessing the mass of available data. Relatively few new data were collected. The White River can be subdivided into five distinct river-quality sections. Section 1, above Winchester, drains a rural area and is affected by agricultural land use, although the river quality generally is good. Section 2, between Winchester and Muncie, is affected by urbanization at Winchester and Muncie. The river quality generally is good, although stretches near the cities occasionally have problems. Section 3, Muncie to Anderson, is polluted by urban effluent. Section 4, Anderson to Indianapolis, is further polluted (particularly at Anderson), but the river tends to recover considerably at Indianapolis, and becomes relatively clean. Section 5, below Indianapolis, is polluted. The river continues to be polluted below the project boundary. The river is affected most severely in the Indianapolis area. For example, in October 1972 the nitrogen load increased from 5.45 tons per day (4.94 tonnes per day) above Indianapolis to 18.43 tons per day (16.72 tonnes per day) below the city. Ten micrograms per kilogram of DDD, 20 micrograms per kilogram of chlordane, and 20 micrograms per kilogram of polychlorinated biphenyls were extracted from the sediments in the White River below Indianapolis. The median coliform bacteria count below Indianapolis is 360,000 colonies per 100 millilitres of water. The only benthic invertebrates found in the White River below Indianapolis are pollution-tolerant species, and very few fish are found. Conditions are similar, but to a somewhat lesser degree, below Muncie.

Indiana

Effects of river discharge and high-tide stage on salinity intrusion in the Weeki Wachee, Crystal, and Withlacoochee River estuaries, southwest Florida

The Weeki Wachee, Crystal, and Withlacoochee Rivers are coastal streams flowing into the Gulf of Mexico that may be affected by either future surface water or groundwater withdrawals. Reduction of river discharge will affect the upstream extent of saltwater intrusion in the rivers; however, under certain reduced low-flow discharges, the estimated change in upstream extent of saltwater intrusion is on the order of several tenths of a mile and frequently is within the range of predicted error. Data on flow, tides, and salinity describe the physical characteristics of the Weeki Wachee, Crystal, and Withlacoochee River systems. Vertical and longitudinal salinity profiles indicate that salinity of the rivers increases downstream and varies substantially at any given location. The Weeki Wachee River system is the best mixed of the three. The Crystal River system exhibited the next best mixed system, and the Withlacoochee River system exhibited the most variation in its salinity regime. The daily maximum upstream extent of salinity intrusion is described by multiple linear-regression analysis based on daily mean streamflow of each river and high-tide stage of the gulf. The equations are used to show the effects of discharge on the daily maximum upstream extent of salinity intrusion in the rivers.

Florida

Restoring ecological integrity of great rivers: Historical hydrographs aid in defining reference conditions for the Missouri River

Restoring the ecological integrity of regulated large rivers necessitates characterizing the natural flow regime. We applied 'Indicators of Hydrologic Alteration' to assess the natural range of variation of the Missouri River's flow regime at 11 locations before (1929-1948) and after (1967-1996) mainstem impoundment. The 3768 km long Missouri River was divided into three sections: upper basin least-altered from flow regulation, including the lower Yellowstone River; middle basin inter-reservoir, and lower basin channelized. Flow regulation was associated with a reduction in magnitude and duration of the annual flood pulse, an increase in magnitude and duration of annual discharge minima, a reduction in frequency of annual low-flow pulses, earlier timing of March-October low-flow pulses, and a general increase in frequency of flow reversals with a reduction in the rate of change in river flows. Hydrologic alterations were smallest at two least-altered upper-basin sites and most frequent and severe in inter-reservoir and upper-channelized river sections. The influence of reservoir operations on depressing the annual flood pulse was partially offset by tributary inflow in the lower 600 km of river. Reservoir operations could be modified to more closely approximate the 1929-1948 flow regime to establish a simulated natural riverine ecosystem. For inter-reservoir and upper channelized-river sections, we recommend periodic controlled flooding through managed reservoir releases during June and July; increased magnitude, frequency and duration of annual high-flow pulses; and increased annual rates of hydrograph rises and falls. All of the regulated Missouri River would benefit from reduced reservoir discharges during August-February, modified timing of reservoir releases and a reduced number of annual hydrograph reversals. Assessment of ecological responses to a reregulation of Missouri River flows that more closely approximates the natural flow regime should then be used in an adaptive fashion to further adjust reservoir operations.

Conference Paper

River network saturation concept: factors influencing the balance of biogeochemical supply and demand of river networks

River networks modify material transfer from land to ocean. Understanding the factors regulating this function for different gaseous, dissolved, and particulate constituents is critical to quantify the local and global effects of climate and land use change. We propose the River Network Saturation (RNS) concept as a generalization of how river network regulation of material fluxes declines with increasing flows due to imbalances between supply and demand at network scales. River networks have a tendency to become saturated (supply ≫ demand) under higher flow conditions because supplies increase faster than sink processes. However, the flow thresholds under which saturation occurs depends on a variety of factors, including the inherent process rate for a given constituent and the abundance of lentic waters such as lakes, ponds, reservoirs, and fluvial wetlands within the river network. As supply increases, saturation at network scales is initially limited by previously unmet demand in downstream aquatic ecosystems. The RNS concept describes a general tendency of river network function that can be used to compare the fate of different constituents among river networks. New approaches using nested in situ high-frequency sensors and spatially extensive synoptic techniques offer the potential to test the RNS concept in different settings. Better understanding of when and where river networks saturate for different constituents will allow for the extrapolation of aquatic function to broader spatial scales and therefore provide information on the influence of river function on continental element cycles and help identify policy priorities.

Biogeochemistry

Understanding constraints on submersed vegetation distribution in a large, floodplain river: The role of water level fluctuations, water clarity and river geomorphology

Aquatic vegetation is a key component of large floodplain river ecosystems. In the Upper Mississippi River System (UMRS), there is a long-standing interest in restoring aquatic vegetation in areas where it has declined or disappeared. To better understand what constrains vegetation distribution in large river ecosystems and inform ongoing efforts to restore submersed aquatic vegetation (SAV), we delineated areas in ~1200 river km of the UMRS where the combined effects of water clarity, water level fluctuation, and bathymetry appeared suitable for establishment and persistence of SAV based on a 22-year dataset for total suspended solids (TSS), water surface elevation, and aquatic vegetation distribution. We found a large increase in suitable area downstream from a large natural riverine lake near the northern end of the UMRS (river km 1230) that functions as a sink for suspended material. Downstream from river km 895, there was much less suitable area due to decreased water clarity from tributary input of suspended material, changes in river geomorphology, and increased water level fluctuation. A hypothetical scenario of 75% reduction in TSS resulted in only minor increases in suitable area in the southern portion of the UMRS, indicating limitations by water level fluctuation and/or bathymetry (i.e., limited shallow area). These results improve our understanding of the structure and function of large river systems by illustrating how water clarity, fluctuations in water level, and river geomorphology interact to create complex spatial patterns in habitat suitability for aquatic species and may help to identify locations most and least likely to benefit from management and restoration efforts.

Illinois, Iowa, Minnesota, Missouri, Wisconsin

Large dams and alluvial rivers in the Anthropocene: The impacts of the Garrison and Oahe Dams on the Upper Missouri River

The Missouri River has had a long history of anthropogenic modification with considerable impacts on river and riparian ecology, form, and function. During the 20th century, several large dam-building efforts in the basin served the needs for irrigation, flood control, navigation, and the generation of hydroelectric power. The managed flow provided a range of uses, including recreation, fisheries, and habitat. Fifteen dams impound the main stem of the river, with hundreds more on tributaries. Though the effects of dams and reservoirs are well-documented, their impacts have been studied individually, with relatively little attention paid to their interaction along a river corridor. We examine the morphological and sedimentological changes in the Upper Missouri River between the Garrison Dam in ND (operational in 1953) and Oahe Dam in SD (operational in 1959). Through historical aerial photography, stream gage data, and cross sectional surveys, we demonstrate that the influence of the upstream dam is still a major control of river dynamics when the backwater effects of the downstream reservoir begin. In the “Anthropocene”, dams are ubiquitous on large rivers and often occur in series, similar to the Garrison Dam Segment. We propose a conceptual model of how interacting dams might affect river geomorphology, resulting in distinct and recognizable morphologic sequences that we term “Inter-Dam sequence” characteristic of major rivers in the US.

North Dakota;South Dakota;Wyoming

Quantifying habitat benefits of channel reconfigurations on a highly regulated river system, Lower Missouri River, USA

We present a quantitative analysis of habitat availability in a highly regulated lowland river, comparing a restored reach with two reference reaches: an un-restored, channelized reach, and a least-altered reach. We evaluate the effects of channel modifications in terms of distributions of depth and velocity as well as distributions and availability of habitats thought to be supportive of an endangered fish, the pallid sturgeon ( Scaphirhynchus albus ). It has been hypothesized that hydraulic conditions that support food production and foraging may limit growth and survival of juvenile pallid sturgeon. To evaluate conditions that support these habitats, we constructed two-dimensional hydrodynamic models for the three study reaches, two located in the Lower Missouri River (channelized and restored reaches) and one in the Yellowstone River (least-altered reach). Comparability among the reaches was improved by scaling by bankfull discharge and bankfull channel area. The analysis shows that construction of side-channel chutes and increased floodplain connectivity increase the availability of foraging habitat, resulting in a system that is more similar to the reference reach on the Yellowstone River. The availability of food-producing habitat is low in all reaches at flows less than bankfull, but the two reaches in the Lower Missouri River – channelized and restored – display a threshold-like response as flows overtop channel banks, reflecting the persistent effects of channelization on hydraulics in the main channel. These high lateral gradients result in punctuated ecological events corresponding to flows in excess of bankfull discharge. This threshold effect in the restored reach remains distinct from that of the least-altered reference reach, where hydraulic changes are less abrupt and overbank flows more gradually inundate the adjacent floodplain. The habitat curves observed in the reference reach on the Yellowstone River may not be attainable within the channelized system on the Missouri River, but the documented hydraulic patterns can be used to inform ongoing channel modifications. Although scaling to bankfull dimensions and discharges provides a basis for comparing the three reaches, implementation of the reference reach concept was complicated by differences in flow-frequency distributions among sites. In particular, habitat availability in the least-altered Yellowstone River reach is affected by increased frequency of low-flow events (less than 0.5 times bankfull flow) and moderately high-flow events (greater than 1.5 times bankfull flow) compared to downstream reaches on the Lower Missouri River.

Lower Missouri River

Evidence of successful river spawning by lake trout (Salvelinus namaycush) in the lower Niagara River, Lake Ontario

Restoration of a wild-produced lake trout Salvelinus namaycush population in Lake Ontario has not been successful despite the adult population often meeting or exceeding restoration targets. Lack of high-quality spawning habitat in Lake Ontario is suggested as one impediment to recruitment of wild lake trout, although the quantity and location of spawning habitat is poorly understood. If high-quality spawning habitat is limited in Lake Ontario, lake trout may be using uncommon spawning locations such as rivers. Anecdotal angler accounts point to the Niagara River as a lake trout spawning location. To better understand the potential of the Niagara River as a spawning location, egg and juvenile fish collections were conducted 12–14 river kilometers from the mouth of the Niagara River from 2010 to 2012; and mature female lake trout with surgically implanted acoustic tags were monitored from 2015 to 2019. Genetic analyses confirmed 60% of collected eggs and 93% of collected post-hatch juvenile fish in the Niagara River were lake trout. Tagged female lake trout returned to the Niagara River over consecutive years during the spawning season. The short duration of lake trout presence in the river (mean = 56 days/year) suggests female lake trout use the Niagara River primarily for spawning. Diversity in spawning locations may provide lake trout population’s resilience against environmental variability through a portfolio effect. Improved identification of riverine spawning locations, including their overall contribution to wild recruitment, may be a useful tool for managers to restore a wild-produced population of lake trout in Lake Ontario.

New York, Ontario

Timing and origin for sand dunes in the Green River Lowland of Illinois, upper Mississippi River Valley, USA

The recent increase in dune studies in North America has been heavily focused in the Great Plains, while less attention has historically been given to the dune fields east of the Mississippi River. Here we report ages and suggest a potential sediment source for sand dunes in the Green River Lowland, Illinois, which may provide a better understanding of the dynamic interactions between eolian, glacial, lacustrine and fluvial processes that shaped the landscapes of the upper Midwest. Seven coherent optically stimulated luminescence ages (OSL, or optical ages) obtained from four sites suggest that major dune construction in the Green River Lowland occurred within a narrow time window around 17,500 ago. This implies either an enhanced aridity or an episodic increase of sediment supply at 17,500 years ago, or combination of the both. Contrary to previous assertions that dune sand was sourced from the deflation of the underlying outwash sand deposited when the Lake Michigan Lobe retreated from the area, we propose that Green River Lowland dunes sand originated from the Green Bay Lobe through the Rock River. Specifically, sediment supply increased in the Rock River valley during drainage of Glacial Lake Scuppernong, which formed between ???18,000 and 17,000 years ago, when the Green Bay Lobe retreated from its terminal moraine. The lake drained catastrophically through the Rock River valley, providing glacial sediment and water to erode the preexisting sandy sediments. Throughout the remainder of the late Pleistocene, the Laurentide Ice Sheet drained into larger more northerly glacial lakes that in turn drained through other river valleys. Therefore, the dunes in the Green River Lowland formed only during the catastrophic drainage of Glacial Lake Scuppernong, but were stabilized through the remainder of the Pleistocene. This scenario explains the abrupt dune construction around 17,500 years ago, and explains the lack of later dune activity up to the Pleistocene-Holocene transition. OSL and radiocarbon ages also indicate that dunes were reactivated during the early, middle and late Holocene. Some eolian activation occurred within well-defined dry intervals in the upper Midwest, suggesting that increased aridity may have been the primary driver in mobilizing sand. However, many ages do not correspond to drier periods. In contrast to the relative coherency of the Pleistocene OSL ages from multiple study sites, the Holocene OSL ages do not overlap from one site to another, suggesting that increased aridity alone cannot explain the multiple phases of dune reactivation in the Holocene. Therefore, we conclude that the combined effect of localized disturbances and greater aridity acted in concert to increase eolian sand activity in the Holocene. The multiple periods of eolian activity during the Holocene suggest a high potential for future sand activation in the region, and these results are informative for environmental prediction and potential future mitigation.

Quaternary Science Reviews

Long-term Mississippi River trends expose shifts in the river load response to watershed nutrient balances between 1975 and 2017

Excess nutrients transported by the Mississippi River (MR) contribute to hypoxia in the Gulf of Mexico. Nutrient balances are key drivers to river nutrient loads and represent inputs (fertilizer, manure, deposition, wastewater, N-fixation, and weathering) minus outputs (nutrient uptake and removal in harvest, and N emissions). Here, we quantified annual changes in nitrogen (N) and phosphorus (P) river loads and nutrient balances at the MR Outlet and documented that the river load response to watershed nutrient balances shifted between 1975 and 2017. Annual nutrient balances and river loads were positively correlated between 1975 and 1985, but after, a disconnect between both the N and P balances and river loads emerged, and the subsequent river load patterns were different for N versus P. We evaluated the relative impacts of legacy nutrients and other latent factors, for which data were not available, on river nutrient load trends. Our analysis showed that in the case of N, latent factors were potentially just as important in explaining changes in river nutrient loads over time as N balances, and in the case of P, they were even more important. We hypothesized that these factors included implementation of best management practices, changes in watershed buffering capacity, the effects of tile drainage, or increased precipitation. Our analytical approach shows promise for the investigation of drivers of water quality trends that are not well-represented in typical national scale geospatial datasets.

Mississippi River

Sediment regime constraints on river restoration - An example from the lower Missouri river

Dammed rivers are subject to changes in their flow, water-quality, and sediment regimes. Each of these changes may contribute to diminished aquatic habitat quality and quantity. Of the three factors, an altered sediment regime is a particularly unyielding challenge on many dammed rivers. The magnitude of the challenge is illustrated on the Lower Missouri River, where the largest water storage system in North America has decreased the downriver suspended-sediment load to 0.2%–17% of pre-dam loads. In response to the altered sediment regime, the Lower Missouri River channel has incised as much as 3.5 m just downstream of Gavins Point Dam, although the bed has been stable to slightly aggrading at other locations farther downstream. Effects of channel engineering and commercial dredging are superimposed on the broad-scale adjustments to the altered sediment regime. The altered sediment regime and geomorphic adjustments constrain restoration and management opportunities. Incision and aggradation limit some objectives of flow-regime management: In incising river segments, ecologically desirable reconnection of the floodplain requires discharges that are beyond operational limits, whereas in aggrading river segments, small spring pulses may inundate or saturate low-lying farmlands. Lack of sediment in the incising river segment downstream of Gavins Point Dam also limits sustainable restoration of sand-bar habitat for bird species listed under the Endangered Species Act. Creation of new shallow-water habitat for native fishes involves taking sediment out of floodplain storage and reintroducing most or all of it to the river, raising concerns about increased sediment, nutrient, and contaminant loads. Calculations indicate that effects of individual restoration projects are small relative to background loads, but cumulative effects may depend on sequence and locations of projects. An understanding of current and historical sediment fluxes, and how they vary along the river, provides a quantitative basis for defining management constraints and identifying opportunities.

Special Paper of the Geological Society of America

A Miocene river in northern Arizona and its implications for the Colorado River and Grand Canyon

The southwesterly course of the pre–late Miocene Crooked Ridge River can be traced continuously for 48 km and discontinuously for 91 km in northern Arizona. It is visible today in inverted relief. Pebbles in the river gravel came from at least as far northeast as the San Juan Mountains. The river valley was carved out of easily eroded Jurassic and Cretaceous rocks, whose debris overloaded the river with abundant detritus, possibly steepening the gradient. After the river became inactive, the regional drainage network was rearranged twice, and the Four Corners region was lowered by erosion 1–2 km. The river provides constraints on the history of the Colorado River and Grand Canyon; its continuation into lakes in Arizona or Utah is unlikely, as is integration of the Colorado River through Grand Canyon by lake spillover. The downstream course of the river was probably across the Kaibab Arch in a valley roughly coincident with the present eastern Grand Canyon.

Arizona