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At least 199 records · Page 11Linked to original sources
USGS2019

Citing aquatic monitoring data sets: Best practice recommendations for authoritative data citation

The use of data generated from long term monitoring efforts necessitates accurate authoritative source citations of those data to ensure credit for data collected, and accountability for the data quality to enable repeated retrieval of a given data set. Data sets used in published reports and articles are increasingly being considered objects that are required to be published and cited. Aggregating data into open access databases is becoming common and is the focus of the Coordinated Assessment for Salmon and Steelhead project (CA; https://www.pnamp.org/project/coordinated-assessments-for-salmon-and-steelhead; http://www.streamnet.org/data/coordinated-assessments/ ) and National Marine Fisheries Service, National Oceanic and Atmospheric Administration Salmon Population Summary (SPS; https://www.webapps.nwfsc.noaa.gov/apex/f?p=261:home:0 ) among others. Guidelines are needed for citing these long-term dynamic data sets that have many contributors. We explore best practices and provide recommendations for including robust metadata attributes within data sets to enable data publication and citation using the CA and SPS data repositories as case studies. F rom reviewing the current citations possible from the CA and the SPS we recommend at minimum that natural resource monitoring databases contain: metadata to identify organizations that generated the data; contact persons for each organization that contributes data to an aggregated data set; and that metadata be incorporated into databases to enable auto-generated citations that recognize all contributing organizations with time-stamped versions of the data delivered. Beyond those minimums, additional best practice recommendations include this suite of metadata elements that identify a given data set upon citation or publication: author(s); publication date; description of data; file format(s) of data - e.g. tiles, shapefile sets, images, text files; dates data were collected; locations where data were collected; producers/contributors to the data set version cited; date data set was downloaded; original data repository from which the data were obtained; version identifier to note significant change to a data set; and a persistent identifier that can be used to locate that version of the data.

Report↗
USGS2004

Water Resources Data, New Jersey, Water Year 2003; Volume 3. Water-Quality Data

Water-resources data for the 2003 water year for New Jersey are presented in three volumes, and consists of records of stage, discharge, and water-quality of streams; stage and contents of lakes and reservoirs; and water levels and water-quality of ground water. Volume 3 contains a summary of surface- and ground-water hydrologic conditions for the 2003 water year, a listing of current water-resources projects in New Jersey, a bibliography of water-related reports, articles, and fact sheets for New Jersey completed by the Geological Survey in recent years, water-quality records of chemical analyses from 123 continuing-record surface-water stations, 35 ground-water sites, records of daily statistics of temperature and other physical measurements from 20 continuous-recording stations, and 5 special-study sites consisting of 2 surface-water sites, 1 spring site, and 240 groundwater sites. Locations of water-quality stations are shown in figures 21-25. Locations of special-study sites are shown in figures 49-53. These data represent that part of the National Water Data System operated by the U.S. Geological Survey and cooperating federal, state, and local agencies in New Jersey.

Water Data Report↗
USGS2006

Water Resources Data, New Jersey, Water Year 2005Volume 3 - Water-Quality Data

Water-resources data for the 2005 water year for New Jersey are presented in three volumes, and consists of records of stage, discharge, and water-quality of streams; stage and contents of lakes and reservoirs; and water levels and water-quality of ground water. Volume 3 contains a summary of surface- and ground-water hydrologic conditions for the 2005 water year, a listing of current water-resources projects in New Jersey, a bibliography of water-related reports, articles, and fact sheets for New Jersey completed by the Geological Survey in recent years, water-quality records of chemical analyses from 118 continuing-record surface-water stations, 30 ground-water sites, records of daily statistics of temperature and other physical measurements from 9 continuous-recording stations, and 5 special studies that included 89 stream, 11 lake, and 29 ground-water sites. Locations of water-quality stations are shown in figures 23-25. Locations of special-study sites are shown in figures 41-46. These data represent that part of the National Water Data System operated by the U.S. Geological Survey and cooperating federal, state, and local agencies in New Jersey.

Water Data Report↗
USGS1995

Evaluation of nonpoint-source contamination, Wisconsin: Land-use and Best-Management-Practices inventory, selected streamwater-quality data, urban-watershed quality assurance and quality control, constituent loads in rural streams, and snowmelt-runoff analysis, water year 1994

The objective of the watershed-management evaluation monitoring program in Wisconsin is to evaluate the effectiveness of best-management practices (BMP) for controlling nonpoint-source contamination in rural and urban watersheds. This report is an annual summary of the data collected for the program by the U.S Geological Survey and a report of the results of several different detailed analyses of the data. A land-use and BMP inventory is ongoing for 12 evaluation monitoring projects to track the sources of nonpoint-source pollution in each watershed and to document implementation of BMP's that may cause changes in the water quality of streams. Updated information is gathered each year, mapped, and stored in a geographic-information-system data base. Summaries of data collected during water years 1989-94 are presented. A water year is the period beginning October 1 and ending September 30; the water year is designated by the calendar year in which it ends. Suspended-sediment and total-phosphorus data (storm loads and annual loads) are summarized for eight rural sites. For all sites, the annual suspended-sediment or suspended-solids load for water year 1993 exceeded the average for the period of data collection; the minimum annual loads were transported in water year 1991 or 1992. Continuous dissolved-oxygen data were collected at seven rural sites during water year 1994. Data for water years 1990-93 are summarized and plotted in terms of percentage of time that a particular concentration is equaled or exceeded. Dissolved-oxygen concentrations in four streams were less than 9 mg/L at least 50 percent of the time, a condition that fails to meet suggested criterion for coldwater streams. The dissolved-oxygen probability curve for one of the coldwater streams is markedly different than the curves for the other streams, perhaps because of differences in aquatic biomass. Blank quality-assurance samples were collected at two of the urban evaluation monitoring sites to isolate contamination in the sample bottle, the automatic sampler and splitter, and the filtration system. Significant contamination caused excessive concentrations of dissolved chloride, alkalinity, and biochemical oxygen demand. The level of contamination may be large enough to affect data for water samples in which these analytes are present at low concentration. Further investigation is being done to determine the source of contamination and take measures to minimize its effect on the sampling. A preliminary regression analysis was done for the rural sites using data collected during water years 1989-93. Loads of suspended solids and total phosphorus in stormflow were regressed against various precipitation-related measures. The results indicate that, for most sites, changes in constituent load on the order of 40 to 50 percent could be detected with a statistical test. For two sites, the change would have to be 60 to 70 percent to be detected. A detailed comparison of snowmelt runoff and rainfall stormflow in urban and rural areas was done using data collected during water years 1985-93. For the rural sites where statistically significant differences were found between constituent loads in snowmelt and storm runoff, the loads of suspended solids and total phosphorus in snowmelt runoff were greater than those in storm runoff. For the urban sites where statistically significant differences were found between snowmelt and storm runoff, the loads of suspended solids and total phosphorus in storm runoff were greater than those in snowmelt runoff. The importance of including snowmelt runoff in designing and analyzing the effects of BMP's on streamwater quality, particularly in rural areas, is emphasized by these results.

Wisconsin↗
USGS1997

Evaluation of Nonpoint-Source Contamination, Wisconsin: Selected Topics for Water Year 1995

The objective of the watershed-management evaluation monitoring program in Wisconsin is to evaluate the effectiveness of best-management practices (BMP's) for controlling nonpoint-source contamination in eight rural and four urban watersheds. This report, the fourth in an annual series of reports, presents a summary of the data collected for the program by the U.S. Geological Survey and the results of several detailed analyses of the data. To complement assessments of water quality, a land-use and BMP inventory is ongoing for 12 evaluation monitoring projects to track nonpoint sources of contamination in each watershed and to document implementation of BMP's that were designed to cause changes in the water quality of streams. Each year, updated information is gathered, mapped, and stored in a geographic-information-system data base. Summaries of land-use, BMP implementation, and water-quality data collected during water years 1989-95 are presented. Storm loads, snowmelt-period loads, and annual loads of suspended sediment and total phosphorus are summarized for eight rural sites. Storm-load data for suspended solids, total phosphorus, total recoverable lead, copper, zinc, and cadmium are summarized for four urban sites. Quality-assurance and quality-control (QA/QC) samples were collected at the eight rural sites to evaluate inorganic sample contamination and at one urban site to evaluate sample-collection and filtration techniques for polycyclic aromatic hydrocarbons (PAR's). Some suspended solids and fecal coliform contamination was detected at the rural sites. Corrective actions will be taken to address this contamination. Evaluation of PAR sample-collection techniques did not uncover any deficiencies, but the small amount of data collected was not sufficient to draw any definite conclusions. Evaluation of PAR filtration techniques indicate that water-sample filtration with O.7-um glass-fiber filters in an aluminum filter unit does not result in significant loss of PAR.

Wisconsin↗
USGS2018

Evaluation of sockeye salmon after passage through an innovative upstream fish-passage system at Cle Elum Dam, Washington, 2017

Executive Summary The Bureau of Reclamation (Reclamation) and the Washington State Department of Ecology (Ecology), working with the Yakima River Basin Water Enhancement Project Workgroup (composed of representatives of the Yakama Nation; Federal, State, county, and city governments; environmental organizations; and irrigation districts), developed the Yakima Basin Integrated Plan (Integrated Plan). The Integrated Plan identifies a comprehensive approach to water resources and ecosystem restoration improvements in the Yakima Basin to be implemented over a 30-year period. The Integrated Plan includes seven elements: Reservoir fish passage, Structural and operational changes to existing facilities, Surface water storage, Groundwater storage, Habitat/watershed protection and enhancement, Enhanced water conservation, and Market reallocation. The first listed element, reservoir fish passage, will be expensive and take many years to accomplish. Reclamation and Ecology decided to look at new and innovative means to provide passage that could help reduce project cost and construction timing while maintaining survival rates of traditional upstream passage facilities. Reclamation contracted with the U.S. Geological Survey to do a study to evaluate the outcome of passage through one innovative fish-passage system at Cle Elum Dam, the first Integrated Plan reservoir fish-passage project being implemented.

Washington↗
USGS2000

Geologic assessment of coal in the Colorado Plateau: Arizona, Colorado, New Mexico, and Utah

This CD-ROM set contains a geologic assessment of coal deposits of the Colorado Plateau region and new resource estimates for selected assessment units within the Colorado Plateau. Original resource estimates (in-place resources before production) for the 12 priority assessment units of the Colorado Plateau exceed one half trillion short tons of coal in beds greater than 1 ft thick and under less than 6,000 ft of overburden. The coal is high quality and low sulfur, and a portion of these resources will provide future energy production for the Nation. Disc 1, in Portable Document Format, contains results of the assessment in summary and (or) technical reports for 12 priority coal assessment units in the Colorado Plateau and also contains an ArcView Data Publisher project, which is an interactive geographic information system of digital data collected during the assessment. Disc 2 contains stratigraphic data bases for seven of the priority coal assessment areas within the Colorado Plateau region and an ArcView project identical to the ArcView Data Publisher project on disc 1 except that it retains some of the functionality that is disabled in the ArcView Data Publisher program.

Arizona, Colorado, New Mexico, Utah↗
USGS2016

Clawpack: Building an open source ecosystem for solving hyperbolic PDEs

Clawpack is a software package designed to solve nonlinear hyperbolic partial differential equations using high-resolution finite volume methods based on Riemann solvers and limiters. The package includes a number of variants aimed at different applications and user communities. Clawpack has been actively developed as an open source project for over 20 years. The latest major release, Clawpack 5, introduces a number of new features and changes to the code base and a new development model based on GitHub and Git submodules. This article provides a summary of the most significant changes, the rationale behind some of these changes, and a description of our current development model.

PeerJ Computer Science↗
USGS2023

Summary of the history and research of the U.S. Geological Survey gas hydrate properties laboratory in Menlo Park, California, active from 1993 to 2022

The U.S. Geological Survey (USGS) Clathrate Hydrate Properties Project, active from 1993 to 2022 in Menlo Park, California, stemmed from an earlier project on the properties of planetary ices supported by the National Aeronautics and Space Administration’s (NASA’s) Planetary Geology and Geophysics Program. We took a material science approach in both projects, emphasizing chemical purity of samples, having controlled grain size and grain texture, and having verified crystal structures and phase relations. A foundational contribution from our USGS Gas Hydrate Properties Laboratory (GHPL) was in demonstrating the ability to reproducibly create such pure clathrate hydrate samples for study. Clathrate sample synthesis was achieved by heating sieved and weighed pure granular water ice in the presence of cold clathrate-forming gas or liquid. During heating, the ice melts at the grain scale and reacts with the gas to form clathrate. The resulting material has the desired uniformity and purity, with known intergranular porosity; our subsequent measurements showed that these clathrates exhibited the established clathrate structures and phase relations. This novel synthesis method was successful in creating clathrates of pure methane, ethane, propane, carbon dioxide, and multi-component gases. By mixing sand or silt with granular ice, we were also able to make clathrate-sediment aggregates with controlled grain textures. This simple method, adopted by many others in the community, permitted us to measure the physical and chemical properties of well-characterized and well-crystallized clathrates and clathrate/sediment aggregates. At about the same time, we adapted conventional scanning electron microscopy to cryogenic conditions for analysis of grain-scale characteristics of clathrates made in the GHPL as well as those collected from nature by drill core. The uniformity and reproducibility of our samples also allowed us to investigate how clathrates respond to environmental changes in chemistry, temperature, and pressure: we measured chemical exchange rates with dissolved gas species—such as noble gases and chlorofluorocarbons—as well as rates of clathrate dissolution and decomposition. These advances include the first accurate mapping of the conditions that promote the remarkable process of “anomalous preservation” at room pressure, a metastability that offers potential application for low-cost and safe transportation of natural gas from gas fields far from pipelines. Another advancement stemming from the GHPL was the compaction of as-synthesized porous clathrates to nearly full density by applying external pressure using three different techniques. Compaction allows for high-accuracy measurements of many fundamental physical and chemical properties of these materials, such as elastic wavespeeds and moduli, complete thermal properties, decomposition rates, thermal expansion, and clathrate equations of state. These properties and others, in turn, have helped USGS scientists to interpret geophysical well logs and active geophysical surveys, as well as model the rates of gas production from hydrate deposits in nature. Studying this class of icy minerals that occur in abundance on Earth and in the outer solar system has been a fascinating laboratory journey. Here, we summarize the history and major findings of the USGS GHPL in Menlo Park, including both in-house research as well as findings from the synergistic collaborations with other agencies and institutes that were key to the success of our laboratory. The Menlo Park GHPL was more formally incorporated within the USGS Gas Hydrates Project, a collaboration among multiple USGS Science Centers, in the early 2000s under the leadership of Deborah Hutchinson, and now under the leadership of Carolyn Ruppel and Timothy Collett.

Open-File Report↗
USGS2001

Evaluation of nonpoint-source contamination, Wisconsin: water year 1999

The objective of the watershed-management evaluation monitoring program in Wisconsin is to evaluate the effectiveness of best-management practices (BMPs) for controlling nonpoint-source pollution in rural and urban watersheds. This progress report provides a summary of the data collected by the U.S Geological Survey for the program and a discussion of the results from several different detailed analyses conducted within this program. A land-use and best-management-practice inventory is ongoing for each evaluation monitoring project to track the different sources of nonpointsource pollution in each watershed and to document implementation of best-management programs that may cause changes in the water quality of streams. Updated information is gathered each year, mapped, and stored in a geographic-information-system database. Summaries of BMP-implementation data collected through the 1999 water year are presented in this report. Suspended sediment and total phosphorus storm-load and annual-load data are summarized for eight rural sites. For all 8 rural sites a sufficient number of pre-BMP storm samples have been collected; for two of the sites (Brewery and Garfoot Creeks), a sufficient number of post-BMP storm samples have been collected to allow for a final assessment of the effectiveness of the BMPs. For the remaining sites, numerous transitional storm samples have been collected, but in all cases BMP implementation has lagged such that there are insufficient post-BMP storm samples for final analysis. For two sites (Rattlesnake and Kuenster Creeks) there are not enough planned BMPs to warrant further data collection. Continuous dissolved-oxygen data collected at 5 rural sites are summarized. In terms of instantaneous concentrations when comparing pre-BMP data to transitional and post-BMP data, the general trend is a reduction in the number of days that the dissolved oxygen concentration was less than the state standard. These results are anecdotal, however; the differences have not been rigorously tested statistically. For a level of dissolved oxygen sustained over a continuous hour, the results are mixed. In general the number of days with standard violations has decreased, but there are notable exceptions. For the four urban streams, the pre-BMP data were examined to determine the level of improvement that could potentially be detected with a statistical analysis. Regression analyses were performed relating constituent loads of suspended solids, total phosphorus and total copper to various independent variables, including seasonal terms and variables related to rainfall. On the basis of the residuals from the regressions, there is a wide range of potential change that could be detected with an analysis of pre- and post-BMP loads. This is likely a result of the high degree of variability in the data, particularly from site to site. For suspended solids, total phosphorus, and total recoverable copper the minimum detectable changes ranges from 20-80, 30-70 and 30-90 percent, respectively. For two of the eight rural streams (Rattlesnake and Kuenster Creeks) minimal BMP implementation has occurred, hence a comparison of pre- BMP and data collected after BMP implementation began is not warranted. For two other rural streams (Brewery and Garfoot Creeks), BMP implementation is complete. For the four remaining rural streams (Bower, Otter, Eagle, and Joos Valley Creeks), the pre-BMP load data were compared to the transitional data to determine if significant reductions in the loads have occurred as a result of the BMP implementation to date. For all sites, the actual constituent loads for suspended solids and total phosphorus exhibit no statistically significant reductions after BMP installation. Multiple regressions were used to remove some of the natural variability in the data. Based on the residual analysis, for Otter Creek, there is a significant difference in the suspended-solids regression residuals between the pre-BMP and transitional periods, indicating a potential reduction as a result of the BMP implementation after accounting for natural variability. For Joos Valley Creek, the residuals for suspended solids and total phosphorus both show a significant reduction after accounting for natural variability. It is possible that the other sites will also show statistically significant reductions in suspended solids and total phosphorus if additional BMPs are implemented.

Wisconsin↗
USGS1987

Opportunities to protect instream flows in Colorado and Wyoming

This document combines the efforts of several individuals, agencies, and organizations toward a common objective: the identification, description, and preliminary evaluation of promising opportunities for protecting instream uses of water under existing laws in Colorado and Wyoming. This report is intended for the use of State and Federal planning and management personnel who need an overview of potential opportunities for preserving instream flows. It is not intended to replace or challenge the advice of agency counsel, nor it is written to provide legal advice. Instead, it is designed as a guide for the person trying to find his or her way among sometimes bewildering State statues and administrative practices. This report is not, and should not be taken as, official policy or prediction of future actions by any agency. It is simply a summary of some potential opportunities for protecting instream uses. Toward these objectives, the U.S. Fish and Wildlife Service, through its Water Resources Analysis Project, contracted in 1977 with Richard Dewsnup and Dallin Jensen to identify available strategies under State and Federal laws, interstate compacts, and water quality laws. A second firm, Enviro Control, Inc., was contracted to evaluate the most promising strategies. Two of the resulting documents were Instream Flow Strategies for Colorado and Instream Flow Strategies for Wyoming , which have been revised, updated, and combined in this report. Discussion of instream flow programs ad opportunities for each State--Colorado and Wyoming-- are written so that each report can be read independently, with minimal cross referencing from one State report to another.

Colorado;Wyoming↗
USGS1990

Opportunities to protect instream flows and wetland uses of water in Florida

This document combines the efforts of several individuals, agencies, and organizations toward a common objective: the identification, description, and preliminary evaluation of promising opportunities for protecting instream uses of water under existing laws in Florida. this report is intended for the use of State and Federal planning and management personnel who need an overview of potential opportunities for preserving instream flows. It is not intended to replace or challenge the advice of agency counsel, nor is it written to provide legal advice. Instead, it is designed as a guide for the person trying to find his way among sometimes bewildering State statutes and administrative practices. This report is not, and should not be taken as, official policy or prediction of future actions by any agency. It is simply a summary of some potential opportunities for protecting instream uses. Toward these objectives, the U.S. Fish and Wildlife Service, through its Water Resource Analysis Project, contracted in 1977 with R. Dewsnup and D. Jensen to identify available strategies under State and Federal laws, interstate compacts, and water quality laws. A second firm, Enviro Control, Inc., was contracted to evaluate the most promising strategies. The resulting documents reported instream flow strategies for 11 States. These reports have been revised, updated, and combined in a number of new monographs, and the Service has added more States to this service over the years. The discussion of instream flow programs and opportunities for each State is written so that each report can be read independently, with minimal cross-referencing from one State report to another. The opportunities for Florida are summarized in the table.

Report↗
USGS2005

Historical shoreline changes along the US Gulf of Mexico: A summary of recent shoreline comparisons and analyses

The US Geological Survey is systematically analyzing historical shoreline changes along open-ocean sandy shores of the United States. This National Assessment of Shoreline Change Project is developing standard repeatable methods for mapping and analyzing shoreline movement so that internally consistent updates can periodically be made to record coastal erosion and land loss along US shores. Recently, shoreline change maps and a report were published for states bordering the Gulf of Mexico. Long-term and short-term average rates of change were calculated by comparing three historical shorelines (1800s, 1930s, 1970s) with an operational mean high water shoreline derived from lidar (light detection and ranging) surveys (post-1998). The rates of change, statistical uncertainties, original shorelines, and complementary geographic information system layers, such as areas of beach nourishment, are available on an Internet Map Server (IMS). For the Gulf of Mexico region, rates of erosion are generally highest in Louisiana along barrier island and headland shores associated with the Mississippi delta. Erosion also is rapid along some barrier islands and headlands in Texas, whereas barrier islands in Mississippi are migrating laterally. Highest rates of erosion in Florida are generally localized around tidal inlets. The most stable Gulf beaches generally are along the west coast of Florida, where low wave energy and frequent beach nourishment minimize erosion. Some long beach segments in Texas have accreted as a result of net longshore drift convergence and around tidal inlets that have been stabilized by long jetties. Individuals and some communities have attempted to mitigate the effects of erosion by emplacement of coastal structures, but those efforts largely have been abandoned in favor of periodic beach nourishment.

Journal of Coastal Research↗
USGS2022

Workshops report for mesophotic and deep benthic community fish, mobile invertebrates, sessile invertebrates and infauna

Two workshops with subject matter experts in the appropriate fields, were held in November and December 2021 to elicit guidance and feedback from the broader mesophotic and deep benthic scientific community. These workshops focused on best practices/approaches and identifying data gaps relative to habitat assessment and evaluation goals of the Mesophotic and Deep Benthic Community (MDBC) restoration portfolio. The first workshop was a combined effort of the Habitat Assessment and Evaluation (HAE) Project Team and the Deepwater Horizon (DWH) Program. Industrial Economics, Inc. (IEc) provided extensive workshop planning, organizing, execution, and facilitation support during all stages of the workshop. Based on a questionnaire sent to scientists in August, 2021, the workshop focused on fish and mobile invertebrate habitat associations, abundance trends, community metrics, and food web functionality. Topical presentations and discussions focused not only on demersal fish and mobile invertebrates that are directly associated with mesophotic and deep benthic habitats, but also considered water column species and communities that benefit from these habitats more broadly. The second workshop, intended to complement the first workshop, focused on identifying best practices and critical information gaps for key community metrics, larval dispersal modeling, connectivity, effects and variability of environmental parameters, and recovery trajectories of corals, infauna, and other sessile invertebrates. Through literature review, internal HAE scientists considered these topics to be critical for restoration success. Products from the literature review included topical summaries (see Appendix B) that summarized the current state-of-the-science and provided the framework for the workshop. Information generated from the workshops will assist the MDBC HAE Project, and more broadly the DWH Program, identify data gaps and develop a suite of best practices for restoration activities.

DWH MDBC Summary Report↗
USGS2022

A summary of water-quality and salt marsh monitoring, Humboldt Bay, California

This report summarizes data-collection activities associated with the U.S. Geological Survey Humboldt Bay Water-Quality and Salt Marsh Monitoring Project. This work was undertaken to gain a comprehensive understanding of water-quality conditions, salt marsh accretion processes, marsh-edge erosion, and soil-carbon storage in Humboldt Bay, California. Multiparameter sondes recorded water temperature, specific conductance, and turbidity at a 15-minute timestep at two U.S. Geological Survey water-quality stations: (1) Mad River Slough near Arcata, California (U.S. Geological Survey station 405219124085601) and (2) Hookton Slough near Loleta, California (U.S. Geological Survey station 404038124131801). At each station, discrete water samples were collected to develop surrogate regression models that were used to compute a continuous time series of suspended-sediment concentration from continuously measured turbidity. Data loggers recorded water depth at a 6-minute timestep in the primary tidal channels (Mad River Slough and Hookton Slough) in two adjacent marshes (Mad River marsh and Hookton marsh). The marsh monitoring network included five study marshes. Three marshes (Mad River, Manila, and Jacoby) are in the northern embayment of Humboldt Bay and two marshes (White and Hookton) are in the southern embayment. Surface deposition and elevation change were measured using deep rod surface elevation tables and feldspar marker horizons. Sediment characteristics and soil-carbon storage were measured using a total of 10 shallow cores, distributed across 5 study marshes, collected using an Eijkelkamp peat sampler. Rates of marsh edge erosion (2010–19) were quantified in four marshes (Mad River, Manila, Jacoby, and White) by estimating changes in the areal extent of the vegetated marsh plain using repeat aerial imagery and light detection and ranging (LiDAR)-derived elevation data. During the monitoring period (2016–19), the mean suspended-sediment concentration computed for Hookton Slough (50±20 milligrams per liter [mg/L]) was higher than Mad River Slough (18±7 mg/L). Uncertainty in mean suspended-sediment concentration values is reported using a 90-percent confidence interval. Across the five study marshes, elevation change (+1.8±0.6 millimeters per year [mm/yr]) and surface deposition (+2.5±0.5 mm/yr) were lower than published values of local sea-level rise (4.9±0.8 mm/yr), and mean carbon density was 0.029±0.005 grams of carbon per cubic centimeter. From 2010 to 2019, marsh edge erosion and soil carbon loss were greatest in low-elevation marshes with the marsh edge characterized by a gentle transition from mudflat to vegetated marsh (herein, ramped edge morphology) and larger wind-wave exposure. Jacoby Creek marsh experienced the greatest edge erosion. In total, marsh edge erosion was responsible for 62.3 metric tons of estuarine soil carbon storage loss across four study marshes. Salt marshes are an important component of coastal carbon, which is frequently referred to as “blue carbon.” The monitoring data presented in this report provide fundamental information needed to manage blue carbon stocks, assess marsh vulnerability, inform sea-level rise adaptation planning, and build coastal resiliency to climate change.

California↗
USGS2006

Vascular Plant and Vertebrate Inventory of Gila Cliff Dwellings National Monument

Executive Summary This report summarizes the results of the first comprehensive biological inventory of Gila Cliff Dwellings National Monument (NM) in western New Mexico. This project was part of a larger effort to inventory plants and vertebrates in eight National Park Service units in Arizona and New Mexico. Our surveys address many of the objectives that were set forth in the monument's natural resource management plan almost 20 years ago, but until this effort, those goals were never accomplished. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at Gila Cliff Dwellings NM to document presence of species within the boundaries of the monument. For all taxonomic groups that we studied, we collected 'incidental' sightings on U.S. Forest Service lands adjacent to the monument, and in a few cases we did formal surveys on those lands. Because we used repeatable study designs and standardized field techniques, these inventories can serve as the first step in a biological monitoring program for Gila Cliff Dwellings NM and surrounding lands. We recorded 552 species at Gila Cliff Dwellings NM and the surrounding lands (Table 1). We found no non-native species of reptiles, birds, or mammals, one non-native amphibian (American bullfrog), and 33 non-native plants. Particularly on lands adjacent to the monument we found that the American bullfrog was very abundant, which is a cause for significant management concern. Species of non-native plants that are of management concern include red brome, bufflegrass, and cheatgrass. For a park unit of its size and geographic location, we found the plant and vertebrate communities to be fairly diverse; for each taxonomic group we found representative species from a wide range of taxonomic orders and/or families. The monument's geographic location, with influences from the Rocky Mountain, Chihuahuan Desert, and Madrean ecological provinces, plays an important role in determining the species richness at the monument. Also important is the wide range of conditions at the site. The diversity of plants results from a wide variety of soil types and aspects (from the cool, moist Cliff Dweller Canyon to dry mesa slopes) and an abundance of water from the West Fork of the Gila River. In turn, the vertebrate communities respond to this diversity of vegetation, topography, and microsites. For example, for each taxonomic group we found species that were only associated with a single community type, most often the riparian areas along the West and Middle forks of the Gila River. We found cause for significant concern with regard to loss of species in the last few decades. One species of amphibian (Chiricahua leopard frog) is certainly extirpated from the area. Three other species of amphibians (Mexican spadefoot, Woodhouse's toad, and red-spotted toad), reported as being 'common' in the area in 1971, were not found during our surveys. In addition, we did not find three species of rodents that were found in 1965: silky pocket mouse, Ord's kangaroo rat, and southern grasshopper mouse. The monument's aquatic vertebrate component, in particular, may be at a critical juncture whereby other species, such as gartersnakes, may be poised for extirpation. Declining abundance of native fish species has been demonstrated from long-term monitoring of these communities along the Middle Fork of the Gila River. This report includes lists of species recorded by us or species likely to be recorded with additional survey effort. It also includes management implications from our work - how the monument staff might better maintain or enhance the unique biological resources of the monument. This study is the first step in a long-term process of compiling information on the biological resources of the monument and its surrounding areas. We recommend additional inventory and monitoring studies and identify components of our effort that could be improved upon

Open-File Report↗
USGS2014

Snake River fall Chinook salmon life history investigations, 1/1/2012 - 12/31/2012: Annual report 2002-032-00

Executive Summary a. Fish Population RM&E This annual report describes the data collected and analyses conducted during calendar years 2012-2013 by staff of project 20023200. The USGS contributed only to the predation research and reservoir invertebrate work described in this report and the presentation of their results is consistent with USGS policy guidelines. The USGS is not responsible for the content provided by other contributing authors. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The main goal of this project is to better understand juvenile Snake River fall Chinook salmon life history diversity and the factors that influence it. This is called for in RPA 55.4 “Investigate key characteristics of Snake River fall Chinook salmon early life history.” We 3 investigated the importance of estuary entry and rearing to various Snake River fall Chinook salmon life histories. Otoliths were used to examine differences in estuary use between subyearlings and yearlings, and to determine natal habitats, rearing habitats, and overwintering habitat for returning adults. Estuary growth was best explained by estuary residence time and natal location. b. Predation and Invasive Species Management RM&E We investigated the extent of smallmouth bass predation on juvenile fall Chinook salmon in Lower Granite Reservoir as called for in the Fish and Wildlife Program, “The federal action agencies should work cooperatively with NOAA Fisheries, states, tribes, and the Council to review, evaluate, develop, and implement strategies to reduce non-native piscivorous predation on salmon and steelhead, especially by smallmouth bass, channel catfish, and walleye” (Page 52). Smallmouth bass stomach contents were collected and analyzed for the presence of juvenile salmon. Smallmouth bass abundance was estimated with mark-recapture techniques, and salmon consumption by bass was expanded based on bass abundance to determine the annual loss of juvenile fall Chinook salmon for the study period and area. The estimated loss of juvenile fall Chinook salmon to predation in Lower Granite Reservoir exceeded 109,000 fish in 2012. This information could be used to adaptively formulate better hatchery release strategies to reduce the effects of predation. Obtaining better estimates of smallmouth bass abundance and distribution in future years would reduce the uncertainty of estimates. This study will be completed by 2017. We also examined the effects of various field temperature scenarios resulting from summer flow augmentation on juvenile fall Chinook salmon susceptibility to smallmouth bass predation in laboratory trials. Predation susceptibility of juvenile salmon acclimated at cool temperatures (10°C) was highest when exposed to predators at 24°C. These results indicate that predation susceptibility may be higher when a relatively large temperature difference exists between the Clearwater and Snake rivers; that is, when cool water flow augmentation occurs in summer. Finally, we examined the role of different invasive invertebrates in lower Snake River reservoir food webs that are food, or competitors for food, for juvenile fall Chinook salmon. The Siberian prawn, a relatively new invader, is relatively abundant but its role on the food web is largely unexplored. Prawns are successfully reproducing and their diet is 81% Neomysis (an invasive opossum shrimp) which is heavily used at times by juvenile salmon for food. Neomysis has become very abundant in lower Snake River reservoirs in recent years and may be a profitable food item for many fish species.

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