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U.S. Geological Survey science in support of the North American Bat Monitoring Program (NABat)

Bats make up one-fifth of all mammalian species worldwide and are found on every continent except Antarctica. They contribute to overall ecosystem health by suppressing pest insects and pollinating plants and spreading seeds. Eight North American bat species are listed as federally endangered or threatened, and more than one-half are of current conservation concern in the United States, Canada, or Mexico. The U.S. Geological Survey (USGS) leads, manages, and coordinates the multinational North American Bat Monitoring Program (NABat) as well as conducts scientific research on bats. USGS and NABat partners help resource managers and policymakers make informed decisions regarding the conservation of bats across North America. USGS science also helps inform decision making with respect to WNS surveillance and bat vulnerability; mitigation of potential impacts of energy development on bats; prelisting conservation efforts for regulatory agencies; and land management practices. Partners are essential to the success of NABat. The data contributed by NABat partners provide baseline knowledge on the distribution and abundance of bats, which is used to evaluate the impacts of the threats to bats across North America. These data are also the foundation for the scientific information used to set conservation priorities and evaluate the effectiveness of management actions.

Fact Sheet

Pesticides in groundwater in the Anacostia River and Rock Creek watersheds in Washington, D.C., 2005 and 2008

The U.S. Geological Survey (USGS), in cooperation with the District Department of the Environment, conducted a groundwater-quality investigation to (a) determine the presence, concentrations, and distribution of selected pesticides in groundwater, and (b) assess the presence of pesticides in groundwater in relation to selected landscape, hydrogeologic, and groundwater-quality characteristics in the shallow groundwater underlying the Anacostia River and Rock Creek watersheds in Washington, D.C. With one exception, well depths were 100 feet or less below land surface. The USGS obtained or compiled ancillary data and information on land use (2001), subsurface sediments, and groundwater samples from 17 wells in the lower Anacostia River watershed from September through December 2005, and from 14 wells in the lower Anacostia River and lower Rock Creek watersheds from August through September 2008. Twenty-seven pesticide compounds, reflecting at least 19 different types of pesticides, were detected in the groundwater samples obtained in 2005 and 2008. No fungicides were detected. In relation to the pesticides detected, degradate compounds were as or more likely to be detected than applied (parent) compounds. The detected pesticides chiefly reflected herbicides commonly used in urban settings for non-specific weed control or insecticides used for nonspecific haustellate insects (insects with specialized mouthparts for sucking liquid) or termite-specific control. Detected pesticides included a combination of pesticides currently (2008) in use, banned or under highly restricted use, and some that had replaced the banned or restricted-use pesticides. The presence of banned and restricted-use pesticides illustrates their continued persistence and resistance to complete degradation in the environment. The presence of the replacement pesticides indicates the susceptibility of the surficial aquifer to contamination irrespective of the changes in the pesticides used. A preliminary review of the data collected in 2005 and 2008 indicated that differences in the surficial geology, land use (as a surrogate for pesticide use), and above-average precipitation for most of 2004 through 2008, as well as differences in the number and performance of USGS laboratory methods used, could have led to more pesticides detected in groundwater samples collected in 2008 than in groundwater samples collected in 2005. Thus, although data from both years of collection were used for interpretive analysis, emphasis was placed on the analysis of the data obtained in 2008. The presence of pesticides in shallow groundwater (less than approximately 100 ft (feet), or 30 m (meters), below land surface) indicated at least the upper surficial aquifer in Washington, D.C. was susceptible to contamination. One or more herbicides or insecticides were detected in groundwater samples collected from 50 percent of the shallow wells sampled in 2005, and from 62 percent of the shallow wells sampled in 2008. Differences among types of pesticides in shallow groundwater were apparent. The most frequently detected class of herbicides was the s-triazine compounds—atrazine, simazine, or prometon, or the atrazine-degradate compounds—2-chloro-4-ethylamino-6-amino-s-triazine (desethylatrazine or CIAT) and 2-chloro-4-isopropylamino-6-amino-s-triazine (hydroxyatrazine or OIET). The next most frequently detected classes of herbicides were the chloroacetanilides, including metolachlor and acetochlor, and the ureic herbicides, including diuron (and degradate, 3,4-dichloroaniline), fluometuron, metsulfuron methyl, sulfameturon, bromacil, and tebuthiuron. Insecticides also were detected, but less frequently than herbicides, with one or more insecticides present in groundwater samples from 38 percent of shallow wells sampled in 2008. Detected insecticides included parent or degradate compounds commonly used for either nonspecific or haustellate (sucking) insects, including chlorpyrifos and dichlorodiphenyldichloroethane (p,p’-DDD; a degradate of dichlorodiphenyltrichloroethane, DDT), and for termite control, including dieldrin, chlordane, heptachlor epoxide, (a degradate of heptachlor), fipronil, and the sulfone and sulfide degradates of fipronil. The concentrations of individual pesticides in shallow groundwater in both years were low. Maximum concentrations were no greater than a few tenths of a microgram per liter (μg/L); typical concentrations often were less than 0.1 μg/L. Multiple pesticides, however, commonly were present in groundwater. For example, in 2008, approximately 88 percent (7 of 8) of the wells that yielded a sample with at least one detectable pesticide contained five or more pesticides. The highest number of detections occurred in a groundwater sample from well WE Ca 32, which is located in a highly developed urban area; this sample contained 15 different pesticide residues. In relation to human and aquatic health, no pesticide concentration in either 2005 or 2008 exceeded Federal drinking-water standards. Groundwater samples from a few sites, however, contained levels of chiefly banned or restricted-use pesticides that exceeded other human-health and (or) aquatic-health guidelines. For example, concentrations of dieldrin in 2008 groundwater samples from three wells—WE Ca 32 (0.028 μg/L), WE Ba 11 (0.016 μg/L), and WW Ac 8 (0.014 μg/L)—fell within the range of concern for 2004 Federally approved non-regulatory USGS Health-Based Assessment benchmarks (0.002 to 0.2 μg/L), and exceeded earlier (1999) Federal criteria for drinking water (0.000052 μg/L). Other individual compounds whose concentrations exceeded 1999 Federal guidelines for samples from one or more of these three sites, or another site, included p,p’-DDD, dichlorodiphenyldichloroethylene (p,p’-DDE; another degradate of DDT), chlordane, and heptachlor epoxide. Pesticide concentrations in groundwater also were compared to three aquatic-health guidelines for freshwater (United States, Great Lakes, or Canada). One or more of these guidelines were exceeded in groundwater samples obtained in 2005 or 2008 for one or more of the compounds chlordane, dieldrin, heptachlor epoxide, p,p’-DDE, p,p’-DDD, and chlorpyrifos. The spatial distribution of pesticides in the shallow groundwater appeared to be related, in part, to land use, a surrogate for pesticide use. Although most of the wells sampled in this study are in parklands or other relatively open and accessible space, multiple pesticides most often were detected in 2008 groundwater samples collected from wells where a considerable percentage (in excess of 60 percent) of the land within a 500-m radius is developed space (residential, commercial, or other urban infrastructure). Insecticides were detected in wells surrounded by at least 50 percent, and most commonly by more than 80 percent, development. Well WE Ca 32, the site associated with the highest number of pesticide residues in groundwater (8 herbicides and 7 insecticides), is in a small residential park, where 99 percent of the surrounding land is well-maintained residential and commercial development. The vertical distribution of detected pesticides in shallow groundwater appeared to be related, in part, to depth below land surface, surficial-bedrock type, and differences in the chemistry of shallow groundwater. Pesticides were detected at relatively shallow depths in wells that may not have fully penetrated the shallow aquifer. For wells in which at least one pesticide was detected, the median depth below land surface to the top of the well screen was 5.8 m, and the maximum depth was 8.5 m. Among the types of surficial materials in which wells were completed—alluvium, terrace deposits, or Potomac Formation sub- or outcrops in the Coastal Plain Province, and saprolite or fractured bedrock (Laurel and Sykesville Formations) underlying saprolite in the Piedmont Province—no pesticides were detected in groundwater associated with wells completed in the alluvium or fractured bedrock. Detections occurred in some but not all wells completed in the other surficial materials. Overall, the pattern in occurrence appeared related to the local permeability of these sediments and groundwater chemistry. Groundwater with multiple pesticide detections tended to occur in permeable sediments (absent any appreciable overlying clay, silt, or clay-silt layers), in conjunction with other common urban contaminants (elevated chloride in excess of tens to hundreds of milligrams per liter (mg/L), and oxic, rather than reduced, groundwater as evidenced by elevated (in excess of 5 mg/L) concentrations of nitrate). The results of this investigation were compared to results from two other similar and recent studies on pesticide occurrence in the shallow aquifer. These included a study in the nearby Maryland and Delaware Coastal Plain Physiographic Province and one in the Maryland and Virginia Piedmont Physiographic Province. Results from these studies were similar to the current study in relation to (a) the types, frequencies, concentrations, and mixtures of pesticides detected; (b) compounds that exceeded human-and aquatic-health criteria; and (c) the occurrence and distribution of pesticides within the surficial aquifer in relation to depths, sediment types, and groundwater chemistries.

Washington D.C.

Atrazine in surface water and relation to hydrologic conditions within the Delaware River Basin Pesticide Management Area, Northeast Kansas, July 1992 through December 1994

Since about 1960, atrazine has been used as an effective pre- and postemergent herbicide in the production of corn and grain sorghum. Atrazine is a triazine-class herbicide and was the most frequently detected herbicide in surface water of the lower Kansas River Basin of southeast Nebraska and northeast Kansas (Stamer and Zelt, 1994). Approximately 95 percent of the atrazine applied in the United States is used in corn and grain-sorghum production, predominately in the Mississippi River Basin where about 82 percent of the Nation's corn acreage is planted (CIBA-GEIGY Corp., 1992). Until recent changes in product labeling, atrazine commonly was applied at relatively high rates to control weeds around commercial and industrial areas and along railroad right-of-ways. Crop yields have increased during the last 40 years due in part to the use of herbicides in reducing weed growth and competition for moisture and nutrients. However, concern on the part of water suppliers, health officials, and the public also has increased regarding the safe and responsible use of herbicides. One issue is whether the widespread use of atrazine may pose a potential threat to public-water supplies in areas where the herbicide is used because of its ability to easily dissolve in water and its possible effects on the health of humans and aquatic life.

Fact Sheet

Ground-water flow model of the Boone formation at the Tar Creek superfund site, Oklahoma and Kansas

Extensive mining activities conducted at the Tar Creek Superfund site, one of the largest Superfund sites in the United States, pose substantial health and safety risks. Mining activities removed a total of about 6,000,000 tons of lead and zinc by 1949. To evaluate the effect of this mining on the ground-water flow, a MODFLOW 2000 digital model has been developed to simulate ground-water flow in the carbonate formations of Mississippian age underlying the Tar Creek Superfund site. The model consists of three layers of variable thickness and a grid of 580 rows by 680 columns of cells 164 feet (50 meters) on a side. Model flux boundary conditions are specified for rivers and general head boundaries along the northern boundary of the Boone Formation. Selected cells in layer 1 are simulated as drain cells. Model calibration has been performed to minimize the difference between simulated and observed water levels in the Boone Formation. Hydraulic conductivity values specified during calibration range from 1.3 to 35 feet per day for the Boone Formation with the larger values occurring along the axis of the Miami Syncline where horizontal anisotropy is specified as 10 to 1. Hydraulic conductivity associated with the mine void is set at 50,000 feet per day and a specific yield of 1.0 is specified to represent that the mine void is filled completely with water. Residuals (the difference between measured and simulated ground-water altitudes) has a root-mean-squared value of 8.53 feet and an absolute mean value of 7.29 feet for 17 observed values of water levels in the Boone Formation. The utility of the model for simulating and evaluating the possible consequences of remediation activities has been demonstrated. The model was used to simulate the emplacement of chat (mine waste consisting of fines and fragments of chert) back into the mine. Scenarios using 1,800,000 and 6,500,000 tons of chat were run. Hydraulic conductivity was reduced from 50,000 feet per day to 35 feet per day in the model cells corresponding to chat emplacement locations. A comparison of the simulated baseline conditions and conditions after simulated chat emplacement revealed little change in water levels, drainage and stream flux, and ground-water flow velocity. Using the calibrated flow model, particle tracks were simulated using MODPATH to evaluate the simultaneous movement of particles with water in the vicinity of four potential sites at which various volumes of chat might be emplaced in the underground mine workings as part of potential remediation efforts at the site. Particle tracks were generated to follow the rate and direction of water movement for a simulated period of 100 years. In general, chat emplacement had minimal effect on the direction and rate of movement when compared to baseline (current) flow conditions. Water-level differences between baseline and chat-emplacement scenarios showed declines as much as 2 to 3 feet in areas immediately downgradient from the chat emplacement cells and little or no head change upgradient. Chat emplacements had minimal effect on changes in surfacewater flux with the largest simulated difference in one cell between baseline and chat emplacement scenarios being about 3.5 gallons per minute.

Scientific Investigations Report

Occurrence of anthropogenic organic compounds and nutrients in source and finished water in the Sioux Falls area, South Dakota, 2009-10

Anthropogenic organic compounds (AOCs) in drinking-water sources commonly are derived from municipal, agricultural, and industrial wastewater sources, and are a concern for water-supply managers. A cooperative study between the city of Sioux Falls, S. Dak., and the U.S. Geological Survey was initiated in 2009 to (1) characterize the occurrence of anthropogenic organic compounds in the source waters (groundwater and surface water) to water supplies in the Sioux Falls area, (2) determine if the compounds detected in the source waters also are present in the finished water, and (3) identify probable sources of nitrate in the Big Sioux River Basin and determine if sources change seasonally or under different hydrologic conditions. This report presents analytical results of water-quality samples collected from source waters and finished waters in the Sioux Falls area. The study approach included the collection of water samples from source and finished waters in the Sioux Falls area for the analyses of AOCs, nutrients, and nitrogen and oxygen isotopes in nitrate. Water-quality constituents monitored in this study were chosen to represent a variety of the contaminants known or suspected to occur within the Big Sioux River Basin, including pesticides, pharmaceuticals, sterols, household and industrial products, polycyclic aromatic hydrocarbons, antibiotics, and hormones. A total of 184 AOCs were monitored, of which 40 AOCs had relevant human-health benchmarks. During 11 sampling visits, 45 AOCs (24 percent) were detected in at least one sample of source or finished water, and 13 AOCs were detected in at least 20 percent of all samples. Concentrations of detected AOCs were all less than 1 microgram per liter, except for two AOCs in multiple samples from the Big Sioux River, and one AOC in finished-water samples. Concentrations of AOCs were less than 0.1 microgram per liter in more than 75 percent of the detections. Nutrient concentrations varied seasonally in source-water samples from surface water and groundwater. In the Big Sioux River, nitrite plus nitrate concentrations were typically less than 1 milligram per liter as nitrogen, and reached a maximum of 4.06 milligrams per liter as nitrogen following a June 2010 storm. Nitrite plus nitrate concentrations in groundwater ranged from less than 0.1 to 0.701 milligram per liter as nitrogen. Eight of the AOCs detected have a human-health benchmark that could be used to evaluate the concentrations in a human-health context. Four AOCs had maximum concentrations within an order of magnitude of the benchmark, indicating that additional monitoring of the compound may be warranted. Three herbicides (atrazine, metolachlor, and prometon) and one degradate (deethylatrazine) were detected in finished-water samples as frequently as in source-water samples. The concentrations of herbicides in source water varied by an order of magnitude from the period of peak use (early summer) to the winter months. Groundwater and finished-water concentrations of atrazine were similar for the six sampling dates when groundwater was the only source water used. Upstream wastewater discharges contributed a fairly small percentage of the flow to the Big Sioux River near Sioux Falls, but several AOCs associated with wastewater were frequently detected. The interpretation of all potential sources of nitrogen cannot be accomplished by use of nitrogen and oxygen isotopes in nitrate alone, but provides a qualitative indication that very little nitrate originates from excess fertilizer runoff, and most nitrate originates from municipal wastewater effluent, manure runoff (either from field application or feeding operations), or fertilizers mineralized by processes in the soil.

South Dakota

Water quality monitoring of Sweetwater and Loveland reservoirs--Phase one results 1998-1999

In 1998, the U.S. Geological Survey began a study to assess the overall health of the watershed feeding the Sweetwater Reservoir in southern San Diego County, California. The study focussed on monitoring for organic chemical contamination and the effects of construction and operation of State Route 125 on water quality. Three environmental compartments (air, water, and bed sediments) are being sampled regularly for chemical contaminants, including volatile organic compounds, polynuclear aromatic hydrocarbons, polychlorinated biphenyls, pesticides, and major and trace elements. The study is divided into two phases. Phase I sampling is designed to establish baseline conditions for target compounds in terms of detection frequency and concentration in air, water, and bed sediments. Phase II sampling will continue at the established monitoring sites during and after construction of State Route 125 to assess chemical impact on water quality in the reservoir resulting from land-use changes and development in the watershed. This report describes the study design, the sampling and analytical methods, and presents the data results for the first year of the study, September 1998 to September 1999.

Open-File Report

Health evaluation of pronghorns (Antilocapra americana) on Hart Mountain National Antelope Refuge in southeastern Oregon, 1996-1997.

One hundred four neonatal (fawns) and 40 adult female (does) pronghorn antelope (pronghorns) ( Antilocapra americana ) were captured on the Hart Mountain National Antelope Refuge (HMNAR) in Lake County, southeastern Oregon, between 13 May 1996 and 26 May 1997. Blood and fecal samples were taken for an investigation of low fawn survival that may be due to disease and/or poor nutrition. No abnormalities were found in hematological parameters of adult does (n = 40) or fawns (n = 44 to 67). In general, there were lower serum total proteins (TP) and Blood Urea Nitrogen (BUN) concentrations in this population than in other populations from Alberta, Canada; Idaho; and Baker City, Oregon. Mean BUN values in does were significantly lower (p < 0.001) in December than March. The duration of this apparently low protein content of the December diet may affect the weight of the newborn and consequent survivability if it should continue into late gestation (March-May). Serum copper (Cu) levels in does (range 0.39 to 0.74 ppm) were considered marginal when compared to domestic animals and some wild ungulates. Fawns had low but apparently normal Cu levels at birth and reached the does' marginal values in about three days. Whole blood and serum Selenium (Se) levels (<100 ng/ml) were considered to be marginal to low in most segments of the pronghorn population in this study. However, serum levels of vitamin E (range 1.98 - 3.27 pg/ml), as determined from the does captured in March, are apparently sufficient to offset any signs of deficiency due to low Se levels. No clinical signs of Cu or Se deficiency were observed. Does captured in December 1996 were tested for neutralizing antibodies to Brucella spp. (n = 20, neg.), Leptospira spp. (n = 20, neg.), bluetongue virus (n = 20, 35% pos.), epizootic hemorrhagic disease virus (n = 20, 30% pos.), respiratory syncytial virus (n = 18, neg.), parainfluenza virus type 3 (n = 18, 67% pos.), infectious bovine rhinotracheitis (n = 18, neg.), and bovine viral diarrhea (n = 18, neg.). Seventeen fawns (9F,8M), nine in 1996 and eight in 1997, survived until at least mid-July each year. Fifty-five of 87 dead fawns were necropsied. Predation by coyotes (Canis latrans) accounted for the majority of fawn mortality (62%), as determined by necropsy, during the two combined summer periods. Other causes of mortality for the combined years included predation by eagle (4%), dystocia (2%), septicemic pasteurellosis (5%), starvation/weak fawn syndrome

Oregon

Wildlife health and disease investigations

Wildlife population management requires knowledge of factors that affect population sustainability. Mortality is one of the most important of those factors. Without a clear understanding of the causes of mortality, decisions by managers of whether or how to intercede may be inappropriate. Wildlife biologists are usually the first to discover, assess, and respond to wildlife mortality. Biologists who make accurate, complete and timely field investigations, and proper collection and shipment of samples to a diagnostic facility are essential for an accurate diagnosis. In combination with wildlife disease specialists, biologists can identify causes of wildlife mortality, detect long-term patterns in factors that affect the survival of populations, and take appropriate corrective action to minimize the impact of some mortality factors on wildlife populations.

Book chapter

Occurrence and potential human-health relevance of volatile organic compounds in drinking water from domestic wells in the United States

Background As the population and demand for safe drinking water from domestic wells increase, it is important to examine water quality and contaminant occurrence. A national assessment in 2006 by the U.S. Geological Survey reported findings for 55 volatile organic compounds (VOCs) based on 2,401 domestic wells sampled during 1985–2002. Objectives We examined the occurrence of individual and multiple VOCs and assessed the potential human-health relevance of VOC concentrations. We also identified hydrogeologic and anthropogenic variables that influence the probability of VOC occurrence. Methods The domestic well samples were collected at the wellhead before treatment of water and analyzed for 55 VOCs. Results were used to examine VOC occurrence and identify associations of multiple explanatory variables using logistic regression analyses. We used a screening-level assessment to compare VOC concentrations to U.S. Environmental Protection Agency maximum contaminant levels (MCLs) and health-based screening levels. Results We detected VOCs in 65% of the samples; about one-half of these samples contained VOC mixtures. Frequently detected VOCs included chloroform, toluene, 1,2,4-trimethylbenzene, and perchloroethene. VOC concentrations generally were < 1 μg/L. One or more VOC concentrations were greater than MCLs in 1.2% of samples, including dibromochloropropane, 1,2-dichloropropane, and ethylene dibromide (fumigants); perchloroethene and trichloroethene (solvents); and 1,1-dichloroethene (organic synthesis compound). Conclusions Drinking water supplied by domestic wells is vulnerable to low-level VOC contamination. About 1% of samples had concentrations of potential human-health concern. Identifying factors associated with VOC occurrence may aid in understanding the sources, transport, and fate of VOCs in groundwater.

Environmental Health Perspectives

Paper birch decline in the Niobrara River Valley, Nebraska: Weather, microclimate, and birch stand conditions

The Niobrara River Valley in north-central Nebraska supports scattered stands of paper birch (Betula papyrifera Marsh), a species more typical of boreal forests. These birch stands are considered to be relictual populations that have persisted since the end of the Wisconsin glaciation, when regional flora was more boreal in nature (Wright 1970, Kaul and others, 1988). Dieback of canopy-sized birch has been observed throughout the Niobrara Valley in recent years, although no onset dates are documented. The current dieback event probably started around or after the early 1980’s. The study objectives were to understand microclimatic conditions in birch stands relative to nearby weather stations and historic weather conditions, and to assess current health conditions of individual birch trees. Temperature was measured every half-hour from June 2005 through October 2007 in 12 birch stands and individual birch tree health was measured as expressed by percent living canopy in these and 13 additional stands in spring 2006 and 2007. Birch site microclimate was compared to data from a National Weather Service station in Valentine, Nebraska, and to an automated weather station at The Nature Conservancy Niobrara Valley Preserve 24 kilometers north of Johnstown, Nebraska. Historic weather data from the Valentine station and another National Weather Service Station at Ainsworth, Nebraska, were used to reconstruct minimum and maximum temperature at The Nature Conservancy and one microclimate monitoring station using Kalman filtering and smoothing algorithms. Birch stand microclimate differed from local weather stations as well as among stands. Birch health was associated with annual minimum temperature regimes; those stands whose annual daily minimum temperature regimes were most like The Nature Conservancy station contained smaller proportions of living trees. Frequency of freeze/thaw conditions capable of inducing rootlet injury and subsequent crown dieback significantly have increased in the second one-half of the period of record (1978–2007) as compared to the first one-half (1948–1977). River location was associated with birch health; upper river sites had significantly healthier trees than north bank sites. Localized microclimates in the birch stands have likely facilitated the persistence of the birch populations in a region otherwise unsuitable for the species. These microclimate differences may reduce frequency of thaw/freeze conditions that can induce root injury and potential crown dieback. A large population decline in the context of increased frequency of potentially injurious climatic events would make population recovery much more difficult now than from 1948 to 1977, when thaw/freeze conditions were less frequent. These conditions, combined with little evidence of recruitment of young birch and great geographic distances from potential immigrant sources, make the future persistence of birch in the Niobrara River Valley stands uncertain.

Open-File Report

Limitations to estimating bacterial cross-speciestransmission using genetic and genomic markers: Inferences from simulation modeling

Cross‐species transmission (CST) of bacterial pathogens has major implications for human health, livestock, and wildlife management because it determines whether control actions in one species may have subsequent effects on other potential host species. The study of bacterial transmission has benefitted from methods measuring two types of genetic variation: variable number of tandem repeats (VNTRs) and single nucleotide polymorphisms (SNPs). However, it is unclear whether these data can distinguish between different epidemiological scenarios. We used a simulation model with two host species and known transmission rates (within and between species) to evaluate the utility of these markers for inferring CST. We found that CST estimates are biased for a wide range of parameters when based on VNTRs and a most parsimonious reconstructed phylogeny. However, estimations of CST rates lower than 5% can be achieved with relatively low bias using as low as 250 SNPs. CST estimates are sensitive to several parameters, including the number of mutations accumulated since introduction, stochasticity, the genetic difference of strains introduced, and the sampling effort. Our results suggest that, even with whole‐genome sequences, unbiased estimates of CST will be difficult when sampling is limited, mutation rates are low, or for pathogens that were recently introduced.

Evolutionary Applications

Occurrence and distribution of volatile organic compounds in drinking water supplied by community water systems in the Northeast and Mid-Atlantic regions of the United States, 1993-98

Data on volatile organic compounds (VOCs) in drinking water supplied by community water systems (CWSs) are available for 12 Northeast and Mid-Atlantic States from 1993-98. The data are from 2,110 CWSs representing a 20 percent random selection of the total 10,749 active CWSs in the region. The data were collected for compliance monitoring under the Safe Drinking Water Act from both surface-and ground-water sources and largely represent samples of finished drinking water collected prior to distribution. Overall, 39 percent of the 2,110 randomly selected CWSs reported a detection of one or more VOCs at or above 1.0 μg/L (micrograms per liter). Although differences in analytical coverage complicate comparisons, in the 1,543 CWSs with THM data at or above 1.0 μg/L, 42 percent reported an occurrence of one or more THMs. The common detection of THMs in finished drinking water probably is related to their formation through the chlorination of drinking-water supplies. Comparatively, solvents, the next most frequently detected VOC group, were reported in 9.8 percent of 2,097 CWSs with solvent data at or above 1.0 μg/L, and gasoline components were detected in 9.0 percent of 2,098 CWSs with data at or above 1.0 μg/L. Individually, the THMs—chloroform, bromodichloromethane, chlorodibromomethane, and bromoform—were the most frequently detected VOCs ranging from 33 to 8 percent. The most frequently detected non-THM compound was methyl tert-butyl ether, which was identified in 8 percent of CWSs. Of the 2,110 randomly selected CWSs, 6 percent had at least one sample with one or more VOCs with a concentration above a Maximum Contaminant Level, Health Advisory, or Drinking-Water Advisory. VOCs were more frequently detected in drinking water from systems that are supplied by surface-water sources, or both surface-and ground-water sources, than in systems that are supplied exclusively by ground water, and from systems serving very large and large populations (serving <3,300 people) compared to systems serving medium and small populations (serving <3,300 people).

Fact Sheet

Geochemistry of mine waste and mill tailings, meadow deposits, streambed sediments, and the general hydrology and water quality for the Frohner Meadows area, upper Lump Gulch, Jefferson County, Montana

Frohner Meadows, an area of low-topographic gradient subalpine ponds and wetlands in glaciated terrane near the headwaters of Lump Gulch (a tributary of Prickly Pear Creek), is located about 15 miles west of the town of Clancy, Montana, in the Helena National Forest. Mining and ore treatment of lead-zinc-silver veins in granitic rocks of the Boulder batholith over the last 120 years from two sites (Frohner mine and the Nellie Grant mine) has resulted in accumulations of mine waste and mill tailings that have been distributed downslope and downstream by anthropogenic and natural processes. This report presents the results of an investigation of the geochemistry of the wetlands, streams, and unconsolidated-sediment deposits and the hydrology, hydrogeology, and water quality of the area affected by these sources of ore-related metals. Ground water sampled from most shallow wells in the meadow system contained high concentrations of arsenic, exceeding the Montana numeric water-quality standard for human health. Transport of cadmium and zinc in ground water is indicated at one site near Nellie Grant Creek based on water-quality data from one well near the creek. Mill tailings deposited in upper Frohner Meadow contribute large arsenic loads to Frohner Meadows Creek; Nellie Grant Creek contributes large arsenic, cadmium, and zinc loads to upper Frohner Meadows. Concentrations of total-recoverable cadmium, copper, lead, and zinc in most surface-water sites downstream from the Nellie Grant mine area exceeded Montana aquatic-life standards. Nearly all samples of surface water and ground water had neutral to slightly alkaline pH values. Concentrations of arsenic, cadmium, lead, and zinc in streambed sediment in the entire meadow below the mine waste and mill tailings accumulations are highly enriched relative to regional watershed-background concentrations and exceed consensus-based, probable-effects concentrations for streambed sediment at most sites. Cadmium, copper, and zinc typically are adsorbed to the surface coatings of streambed-sediment grains. Mine waste and mill tailings contain high concentrations of arsenic, cadmium, copper, lead, and zinc in a quartz-rich matrix. Most of the waste sites that were sampled had low acid-generating capacity, although one site (fine-grained mill tailings from the Nellie Grant mine deposited in the upper part of lower Frohner Meadows) had extremely high acid-generating potential because of abundant fine-grained pyrite. Two distinct sites were identified as metal sources based on streambed-sediment samples, cores in the meadow substrate, and mine and mill-tailings samples. The Frohner mine and mill site contribute material rich in arsenic and lead; similar material from the Nellie Grant mine and mill site is rich in cadmium and zinc.

Montana

Baseline groundwater quality in national park units within the Marcellus and Utica Shale gas plays, New York, Pennsylvania, and West Virginia, 2011

Groundwater samples were collected from 15 production wells and 1 spring at 9 national park units in New York, Pennsylvania, and West Virginia in July and August 2011 and analyzed to characterize the quality of these water supplies. The sample sites generally were selected to represent areas of potential effects on water quality by drilling and development of gas wells in Marcellus Shale and Utica Shale areas of the northeastern United States. The groundwater samples were analyzed for 53 constituents, including nutrients, major inorganic constituents, trace elements, chemical oxygen demand, radioactivity, and dissolved gases, including methane and radon-222. Results indicated that the groundwater used for water supply at the selected national park units is generally of acceptable quality, although concentrations of some constituents exceeded at least one drinking-water guideline at several wells. Nine analytes were detected in concentrations that exceeded Federal drinking-water standards, mostly secondary standards that define aesthetic properties of water, such as taste and odor. One sample had an arsenic concentration that exceeded the U.S. Environmental Protection Agency maximum contaminant level (MCL) of 10 micrograms per liter (&mu;g/L). The pH, which is a measure of acidity (hydrogen ion activity), ranged from 4.8 to 8.4, and in 5 of the 16 samples, the pH values were outside the accepted U.S. Environmental Protection Agency secondary maximum contaminant level (SMCL) range of 6.5 to 8.5. The concentration of total dissolved solids exceeded the SMCL of 500 milligrams per liter (mg/L) at four sites. The sulfate concentration exceeded the SMCL of 250 mg/L concentration in one sample, and the fluoride concentration exceeded the SMCL of 2 mg/L in one sample. Sodium concentrations exceeded the U.S. Environmental Protection Agency drinking water health advisory of 60 mg/L at four sites. Iron concentrations exceeded the SMCL of 300 &mu;g/L in two samples, and manganese concentrations exceeded the SMCL of 50 &mu;g/L in five samples. Radon-222 concentrations exceeded the proposed U.S. Environmental Protection Agency MCL of 300 picocuries per liter in eight samples.

New York;Pennsylvania;West Virginia

Pesticides in Wyoming Groundwater, 2008-10

Groundwater samples were collected from 296 wells during 1995-2006 as part of a baseline study of pesticides in Wyoming groundwater. In 2009, a previous report summarized the results of the baseline sampling and the statistical evaluation of the occurrence of pesticides in relation to selected natural and anthropogenic (human-related) characteristics. During 2008-10, the U.S. Geological Survey, in cooperation with the Wyoming Department of Agriculture, resampled a subset (52) of the 296 wells sampled during 1995-2006 baseline study in order to compare detected compounds and respective concentrations between the two sampling periods and to evaluate the detections of new compounds. The 52 wells were distributed similarly to sites used in the 1995-2006 baseline study with respect to geographic area and land use within the geographic area of interest. Because of the use of different types of reporting levels and variability in reporting-level values during both the 1995-2006 baseline study and the 2008-10 resampling study, analytical results received from the laboratory were recensored. Two levels of recensoring were used to compare pesticides—a compound-specific assessment level (CSAL) that differed by compound and a common assessment level (CAL) of 0.07 microgram per liter. The recensoring techniques and values used for both studies, with the exception of the pesticide 2,4-D methyl ester, were the same. Twenty-eight different pesticides were detected in samples from the 52 wells during the 2008-10 resampling study. Pesticide concentrations were compared with several U.S. Environmental Protection Agency drinking-water standards or health advisories for finished (treated) water established under the Safe Drinking Water Act. All detected pesticides were measured at concentrations smaller than U.S. Environmental Protection Agency drinking-water standards or health advisories where applicable (many pesticides did not have standards or advisories). One or more pesticides were detected at concentrations greater than the CAL in water from 16 of 52 wells sampled (about 31 percent) during the resampling study. Detected pesticides were classified into one of six types: herbicides, herbicide degradates, insecticides, insecticide degradates, fungicides, or fungicide degradates. At least 95 percent of detected pesticides were classified as herbicides or herbicide degradates. The number of different pesticides detected in samples from the 52 wells was similar between the 1995-2006 baseline study (30 different pesticides) and 2008-2010 resampling study (28 different pesticides). Thirteen pesticides were detected during both studies. The change in the number of pesticides detected (without regard to which pesticide was detected) in groundwater samples from each of the 52 wells was evaluated and the number of pesticides detected in groundwater did not change for most of the wells (32). Of those that did have a difference between the two studies, 17 wells had more pesticide detections in groundwater during the 1995-2006 baseline study, whereas only 3 wells had more detections during the 2008-2010 resampling study. The difference in pesticide concentrations in groundwater samples from each of the 52 wells was determined. Few changes in concentration between the 1995-2006 baseline study and the 2008-2010 resampling study were seen for most detected pesticides. Seven pesticides had a greater concentration detected in the groundwater from the same well during the baseline sampling compared to the resampling study. Concentrations of prometon, which was detected in 17 wells, were greater in the baseline study sample compared to the resampling study sample from the same well 100 percent of the time. The change in the number of pesticides detected (without regard to which pesticide was detected) in groundwater samples from each of the 52 wells with respect to land use and geographic area was calculated. All wells with land use classified as agricultural had the same or a smaller number of pesticides detected in the resampling study compared to the baseline study. All wells in the Bighorn Basin geographic area also had the same or a smaller number of pesticides detected in the resampling study compared to the baseline study.

Wyoming

Characterization of the quality of water, bed sediment, and fish in Mittry Lake, Arizona, 2014–15

Water, bed-sediment, and fish sampling was conducted in Mittry Lake, Arizona, in 2014–15 to establish current water-quality conditions of the lake. The parameters of temperature, dissolved-oxygen concentration, specific conductance, and alkalinity were measured in the field. Water samples were collected and analyzed for dissolved major ions, dissolved trace elements, dissolved nutrients, dissolved organic carbon, dissolved pesticides, bacteria, and suspended-sediment concentrations. Bed-sediment and fish samples were analyzed for trace elements, halogenated compounds, total mercury, and methylmercury. U.S. Environmental Protection Agency secondary maximum contaminant levels in drinking water were exceeded for sulfate, chloride, and manganese in the water samples. Trace-element concentrations were relatively similar between the inlet, middle, and outlet locations. Concentrations for nutrients in all water samples were below the Arizona Department of Environmental Quality’s water-quality standards for aquatic and wildlife uses, and all bacteria levels were below the Arizona Department of Environmental Quality’s recommended recreational water-quality criteria. Three out of 81 pesticides were detected in the water samples. Trace-element concentrations in bed sediment were relatively consistent between the inlet, middle, and outlet locations. Lead, manganese, nickel, and zinc concentrations, however, decreased from the inlet to outlet locations. Concentrations for lead, nickel, and zinc in some bed-sediment samples exceeded consensus-based sediment-quality guidelines probable effect concentrations. Eleven out of 61 halogenated compounds were detected in bed sediment at the inlet location, whereas three were detected at the middle location, and five were detected at the outlet location. No methylmercury was detected in bed sediment. Total mercury was detected in bed sediment at concentrations below the consensus-based sediment-quality guidelines probable effect concentration. Sixteen trace elements were detected in at least one of the fish-tissue samples, and trace-element concentrations were relatively consistent between the three fish-tissue samples. Seven halogenated compounds were detected in at least one of the whole-body fish samples; four to five compounds were detected in each fish. One fish-tissue sample exceeded the U.S. Environmental Protection Agency human health consumption criteria for methylmercury.

Texas

Pesticides in surface water downstream of and near agricultural and developed land in Hawai‘i, 2015–19

Pesticides and pesticide degradates (herein referred to as pesticides) in surface water were assessed at 78 sites on 4 Hawaiian Islands (Kauaʻi, Oʻahu, Maui, and Island of Hawaiʻi) during 2015–19. Each site was downstream of or near agricultural land, developed land, or both. Most (58) sites were streams; the remaining sites were canals, ditches, anchialine pools, coastal ponds, and the nearshore ocean. Pesticides in water at each site were assessed by collection of one to four water samples, by a weeks-long deployment of a passive sampler, or both. Passive-sampler extracts and water samples, which consisted of fair-weather samples and storm samples, were analyzed for as many as 253 pesticides that consisted of 129 herbicides, 101 insecticides, and 23 fungicides. A total of 117 pesticides were detected in water. Of these, 30 pesticides were detected at more than 20 percent of their assessment sites and thus were considered “common” pesticides. The common pesticides included 17 herbicides (ametryn, atrazine, bentazon, bromacil, diuron, hexazinone, metolachlor, propazine, simazine, triclopyr, prometryn, and degradates of atrazine [4], diuron, hexazinone, and prometryn); 8 insecticides (carbaryl, dinotefuran, fipronil, flubendiamide, imidacloprid, methoxyfenozide and 2 degradates of fipronil); and 5 fungicides (azoxystrobin, metalaxyl, propiconazole, a degradate of chlorothalonil, and a degradate of thiophanate-methyl and benomyl). Common pesticides typically were present more frequently in storm samples than in fair-weather samples. A mixture of two or more pesticides was detected in 86 percent of the water samples and in water during every passive-sampler deployment. About 92 percent of all pesticide detections had concentrations less than 100 nanograms per liter. Pesticide concentrations were less than Federal aquatic-life benchmarks (ALBs) for vertebrates and typically were less than ALBs for invertebrates, nonvascular plants, and vascular plants. Acute ALBs were exceeded by acetochlor, atrazine, carbaryl, chlorpyrifos, cis-permethrin, diazinon, diuron, halosulfuron methyl, and imidacloprid in storm samples at one to four sites. ALBs for invertebrates were exceeded by clothianidin, diazinon, fipronil, and imidacloprid in fair-weather samples, during passive-sampler deployments, or both at 1 to 17 sites. Federal drinking water standards were available for only five pesticides detected in water, and the standard for atrazine was exceeded in one storm sample. Pesticide concentrations did not exceed any Federal human-health benchmarks, but many of the detected pesticides did not have a benchmark.

Hawaii

Groundwater surveillance of swine pathogens from private wells supplying swine farms in Iowa

Biosecurity practices are essential for maintaining pig health and productivity. Despite these measures, pathogen spread still occurs. Water is one of the largest daily inputs on swine farms by volume and is not routinely tested or disinfected before it is consumed by the animals [1-3], making it a poorly understood biosecurity risk. Groundwater from privately-owned wells is a common water source for swine farms. Pathogens in the landscape, such as bacteria, viruses, and protozoa, can reach groundwater more rapidly through soil macropores, maintaining viability and facilitating transmission of pathogens into aquifers [3-13].

Iowa