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What evidence exists on the ecological and physical effects of built structures in shallow, tropical coral reefs? A systematic map protocol

Background Shallow, tropical coral reefs face compounding threats from habitat degradation due to coastal development and pollution, impacts from storms and sea-level rise, and pulse disturbances like blast fishing, mining, dredging, and ship groundings that reduce coral reefs’ height and variability. One approach toward restoring coral reef structure from these threats is deploying built structures. Built structures range from engineered modules and repurposed materials to underwater sculptures and intentionally placed natural rocks. Restoration practitioners and coastal managers increasingly consider incorporating built structures, including nature-based solutions, into coral reef-related applications. Yet, synthesized evidence on the ecological and physical performance of built structure interventions across a variety of contexts (e.g., restoration, coastal protection, mitigation, tourism) is not readily available to guide decisions. To help inform management decisions, here we aim to document the global evidence base on the ecological and physical performance of built structures in shallow (≤ 30 m) tropical (35° N to 35° S latitude) coral ecosystems. The collated evidence base on use cases and associated ecological and physical outcomes of built structure interventions can help inform future consideration of built structures in reef restoration design, siting, and implementation. Method To discover evidence on the performance of built structures in coral reef-related applications, such as restoration, mitigation, and coastal protection, primary literature will be searched across indexing platforms, bibliographic databases, open discovery citation indexes, a web-based search engine, a novel literature discovery tool, and organizational websites. The geographic scope of the search is global, and there is no limitation to temporal scope. Primary literature will be screened first at the level of title and abstract and then at the full text level against defined eligibility criteria for the population, intervention, study type, and outcomes of interest. Metadata will be extracted from studies that pass both screening levels. The resulting data will be analyzed to determine the distribution and abundance of evidence. Results will be made publicly available and reported in a systematic map that includes a narrative description, identifies evidence clusters and gaps, and outlines future research directions on the use of built structures in coral reef-related applications.

Environmental Evidence

Sediment lithology and borehole erosion testing, American and Sacramento Rivers, California

Executive Summary A field investigation intended to measure the potential for erosion of sediments beside the American and Sacramento Rivers near Sacramento, California, is described. The study featured two primary components: (1) drilling and soil sampling to reveal lithology, down to depths matching the local river thalweg, where possible, and (2) borehole erosion tests (BETs) as described by Briaud and others (2017) at many of the same locations. The latter test involved drilling a vertical hole, measuring its diameter profile, inserting a hollow drilling rod to almost the bottom of the hole, and pumping fluid through the drilling rod at a known discharge for a chosen time interval. The hole was then resurveyed to establish an erosion rate (change in borehole radius divided by duration of flow event) as a function of depth, and the test was repeated. This test was performed with water as the erosive fluid at 12 locations, with 1 test repeated with drilling mud. Lithology holes were drilled at these same locations and an additional five locations. Drilling operations took place on river left and river right on the American River and river left (left bank, when looking downstream) on the Sacramento River. The drilling to acquire sediment samples and reveal lithology involved the use of a mobile drilling rig equipped with a 6-inch (in.) auger, a 140-pound pneumatic hammer to drive split spoon and Calmod samplers, and a piston to push Shelby tube samplers to obtain samples of clayey material. Blow count (hammer blows per 6-in. sampler advance) was recorded while sampling, and the process was logged using standard U.S. Army Corps of Engineers (USACE), Sacramento District procedures. Sediment samples were identified and described in the field per ASTM D2488 and then delivered to a USACE laboratory and to Texas A&M University for additional laboratory analysis. The BETs were performed with the same drilling rig that performed the drilling for definition of lithology. In most instances, tests were limited to regions above the water table, to avoid slumping of the borehole and heaving sands pushing into the hole. Most of the tests featured sediments that were primarily silty sand or sandy silt. The testing procedure involved comparing borehole profiles before and after passing an assumed constant discharge through a drilling rod to the bottom of the drilled hole. Discharge and water losses were logged during the testing procedure, and water losses into the walls of the drilled hole were typically less than 5 percent of the introduced volume. For the tests performed with water, the coefficient of variation of the discharge ranged from 4.5 to 28 percent, with a mean of 13 percent, but the mean discharge appeared to be reasonably steady over the typical test duration of 10–30 minutes. It was thus assumed that discharge was constant and water losses during the tests were neglected. Coefficients of variation of the discharge for the three tests performed with drilling mud were much higher (20–50 percent), but erosion rates were much smaller. Resolution of the borehole caliper-reported diameter was 0.1 in. and several of the tests lasted for 10 minutes. With boreholes measured twice, before and after each test, and averaged, these numbers correspond to an apparent erosion rate (radius change divided by test duration) of 0.3 inches per hour (in/hr), which is a theoretical lower bound on what could be measured with this approach and equipment. In practice, 0.5 in/hr appears to be a more realistic lower bound on the detectable erosion rate, based on inspection of computed changes and erosion rates. Three flow speeds (5, 8, and 12 feet per second; ft/s) were targeted for the tests. Because of equipment limitations, it was not possible in the field to reach an average of 12 ft/s throughout any given borehole, although much higher flow speeds were reached locally in some cases. Most tests featured at least two different flow rates, and the borehole was typically surveyed at least twice for each condition, to allow averaging to reduce the influence of random diameter measurement errors. Errors arising from out-of-round boreholes appeared to be uncommon. Briaud and others (2017) recommend stepped increases in the flow rate during a borehole test. This approach was taken during initial testing but proved to be problematic. The drilled hole would be enlarged by the first (smaller) discharge, and then it would be difficult to reach the desired higher flow speed because of the larger annulus between the drilled hole and the drilling rod that supplied the water for testing. This was largely solved by starting with a high discharge and, in many cases, maintaining it for subsequent tests with the average flow speed decreasing as the hole enlarged. Several different measures of erosion rate were computed and investigated by comparison to lithological profiles. The vertically averaged erosion rate for each hole was computed, but this result does not reveal vertical variability of erodibility; and the mean flow speed within the hole is not a good representation of the speed when attempting to determine a relationship between erosion rate and flow speed. Instead, for each 6-inch layer within the hole, vertically averaged erosion rates and local flow speeds were computed and plotted. Where possible, the soil type for each layer was identified. For later laboratory analysis, project protocol dictated collection of Shelby tube samples whenever clay was encountered. Plots of erosion rate versus flow speed displayed scatter that indicate that several other factors influence the erosion potential of the soil. Blow count was not a good predictor variable; it is better correlated with soil type than erodibility. Soils were classified as sand, silt, or clay, depending on which soil type dominated within a sample. In general, those classified as sand and silt did not reveal clear patterns allowing erosion rate to be computed directly from flow speed, but the test results define the range and bounds on the erosion rate. Results for clay were slightly clearer with the erosion rate increasing with flow speed, once a threshold had been reached. In this case, the erosion rate appeared to change near a speed of 7 ft/s; above this threshold, erosion rates jumped from less than 2 in/hr to greater than 3 in/hr. Even for soils with similar classifications, large differences in erodibility were observed between sites and in different layers within an individual hole. One potential means of dealing with this problem would be to perform more tests at each site to allow establishment of relationships between flow speed and erodibility for individual layers within a borehole. The maximum number of tests performed at a site in this study was four, but in some cases, results are available for only one or two flow events. Comparison of data to a set of Erosion Function Apparatus tests that provide better resolution of the vertical variation in the erosion rate versus flow speed relationship would allow further investigation of this idea. It was hypothesized that drilling mud could expand the utility of the test in soft sands by reducing the likelihood of slumping that would be interpreted as erosion. The one test that was performed with drilling mud indicated that it greatly reduced the erosion rate of the soils encountered. It yielded very different results from the test performed at the same site with water. Erosion rate is often expressed as a function of shear stress applied to a soil. In order to compute shear stress on the walls of the drilled hole, one must assume a form for the relationship between flow speed and shear stress and select a friction factor that is often estimated empirically from head loss, observed water-surface profiles, surface roughness, or other data not available in this report. One methodology for computing shear stress from flow speed is discussed in this report, but the test results have been presented in terms of erosion rate versus flow speed to avoid assuming values that are not verifiable via the field data collected in this study. Erosion rate was computed from directly measured values (sequential borehole profiles) and flow speed was computed directly from measured quantities (discharge and borehole geometry). The BET has seen limited application, primarily in clayey soils, whereas most of the soils encountered in this study were primarily sand or silt. The objective of the BET is to determine the erodibility of in situ soil below the ground or riverbed surface. The BET is simple in principle and has the advantage of revealing erodibility of in situ sediments below the ground or riverbed surface; it appears to be very useful in clayey soils, based on previously published work, but is more difficult to apply in sandy soils where slumping and water losses within the hole during testing are more likely to occur. The BET did reveal a large variation in the results both laterally and vertically, even for the same soil-type classification. It is thus recommended that the results be applied considering these spatial variations rather than attempting to universally assign an erosion-rate relationship to a particular soil type. Results have been provided showing the results by site and by sediment classification (sand, silt, and clay), to allow either approach. Where possible, it is important to rely on site-specific results because the erosion-rate relationship for a given soil type varied by site. Data collected during this project have been made publicly available online via the U.S. Geological Survey (USGS) Sciencebase database. The measured borehole profiles, discharge, lithology log sheets, and photos are available in the data release that accompanies this report (see Work and Livsey (2019) in the “Selected References” section for the appropriate link).

California

Ad hoc instrumentation methods in ecological studies produce highly biased temperature measurements

In light of global climate change, ecological studies increasingly address effects of temperature on organisms and ecosystems. To measure air temperature at biologically relevant scales in the field, ecologists often use small, portable temperature sensors. Sensors must be shielded from solar radiation to provide accurate temperature measurements, but our review of 18 years of ecological literature indicates that shielding practices vary across studies (when reported at all), and that ecologists often invent and construct ad hoc radiation shields without testing their efficacy. We performed two field experiments to examine the accuracy of temperature observations from three commonly used portable data loggers (HOBO Pro, HOBO Pendant, and iButton hygrochron) housed in manufactured Gill shields or ad hoc, custom‐fabricated shields constructed from everyday materials such as plastic cups. We installed this sensor array (five replicates of 11 sensor‐shield combinations) at weather stations located in open and forested sites. HOBO Pro sensors with Gill shields were the most accurate devices, with a mean absolute error of 0.2°C relative to weather stations at each site. Error in ad hoc shield treatments ranged from 0.8 to 3.0°C, with the largest errors at the open site. We then deployed one replicate of each sensor‐shield combination at five sites that varied in the amount of urban impervious surface cover, which presents a further shielding challenge. Bias in sensors paired with ad hoc shields increased by up to 0.7°C for every 10% increase in impervious surface. Our results indicate that, due to variable shielding practices, the ecological literature likely includes highly biased temperature data that cannot be compared directly across studies. If left unaddressed, these errors will hinder efforts to predict biological responses to climate change. We call for greater standardization in how temperature data are recorded in the field, handled in analyses, and reported in publications.

Ecology and Evolution

Simulation of hydrodynamics and solute transport in the Pamlico River estuary, North Carolina

An investigation was conducted to characterize flow, circulation, and solute transport in the Pamlico River estuary, North Carolina. The study included a detailed field-measurement program and the calibration, validation, and application of a physically realistic numerical model of hydro- dynamics and transport. Water level, salinity, water temperature, wind speed and direction, and current data were collected during March 1988 through September 1992, and were used to characterize physical conditions in the estuary. Data from pre- existing streamflow gaging stations and meteoro- logical stations were also used. A two-dimensional vertically averaged hydrodynamic and solute transport model was applied to the 48-kilometer study reach. The model domain was discretized into 5,620 separate 200- by 200-meter computational cells. Model calibration was achieved through adjustment of parameters for June 14-30, 1991. Data from selected periods in 1989 and 1991 were used for model validation. Water levels used for model calibration and validation ranged from -0.052 to 0.698 meter; salinities ranged from 0.1 to 13.1 parts per thousand; and wind speeds ranged from calm to 22 meters per second. The model was tested for stratified and unstratified conditions. Simulated and observed data were used to evaluate model performance. The calibrated model was applied for selected periods in 1989 and 1991. Instantaneous flows were simulated at each boundary and at mid- estuary. Circulation patterns were characterized using vector plots, particle tracking, and solute transport. Particle tracks showed that materials released at mid-estuary may remain in the system for 25 days or longer.

North Carolina

Measurements of erosion potential using Gust chamber in Yolo Bypass near Sacramento, California

This report describes work performed to quantify the erodibility of surface soils in the Yolo Bypass (Bypass) near Sacramento, California, for use in the California Department of Water Resources (DWR) Yolo Bypass D-MCM mercury model. The Bypass, when not serving as a floodway, is heavily utilized for agriculture. During flood events, surface water flows over the soil, resulting in the application of a shear stress to the soil. The shear stress is a function of flow speed and is often assumed to vary as the square of flow speed. Once the shear stress reaches a critical value, erosion commences, and the erosion rate typically increases with applied shear stress. The goal of the work described here was to quantify this process and how it varies throughout the major land uses found in the Yolo Bypass. Each of the major land uses found in the Bypass was targeted for sediment coring and two side-by-side cores, 10 centimeters in diameter, were extracted at each site for testing in a Gust erosion chamber. This device consists of a cylinder with a piston and cap installed to contain a sediment sample and overlying water. In most instances, coring was done with the cylinder, the piston and cap were installed, and testing commenced immediately. The cap at the top of the cylinder contains vanes to induce rotation of the flow and is driven by an electric motor, simulating the bed shear stress experienced by the soil in a flood event. Ambient water is introduced to the cylinder, passes through the device, and carries eroded sediment out of the chamber. The exiting water is tested for turbidity, and water samples obtained to relate turbidity to suspended sediment concentration are used to compute erosion rates for each of the applied shear stresses. The result for each sediment core is (1) definition of the critical shear stress required to initiate sediment erosion and (2) estimation of coefficients required to relate erosion rate to applied shear stress once this critical shear-stress threshold has been exceeded. These quantities were computed for each of the sites sampled. In total, 10 locations were sampled, representing 10 land uses ranging from wild and white rice fields to the flooded Liberty Island and the Toe Drain that receives runoff from much of the cultivated land (table 1). The Gust chamber test causes the erosion of a very small layer of sediment, typically less than a millimeter thick. The strength of the soil within this layer increases with depth, typically, and this soil strength versus depth is measured in the testing process. Results for each land use type tested are presented as the initial critical shear stress at which erosion began and the rate at which erosion increases as shear stress increases (table 2). Of the land use types sampled, irrigated pasture displayed the lowest critical shear stress, meaning that it required the smallest flow speed to initiate erosion. But in this case, the rate of increase of the subsequent erosion, given higher flow speeds, was small. The wild rice field samples exhibited a higher critical shear stress but also exhibited a much higher erosion rate once the critical shear stress was exceeded. The erosion rate for wild rice was about three times greater than that for white rice. Bear in mind that these results are based on only two cores tested per site, and variability between fields with the same crop could be significant. Approved digital data can be viewed and downloaded from ScienceBase, at https://doi.org/10.5066/F7BV7DQC . These results are being used to calculate erosion rates in the DWR Yolo Bypass D-MCM mercury model. The Toe Drain was very difficult to sample, owing to hard, consolidated sediments on the channel bed. On the first visit, two cores were obtained successfully, and testing revealed very different results. A second visit was made, but it was not possible to obtain cores suitable for testing with the coring equipment used. The available results suggest that Toe Drain soil is highly erodible (low critical shear stress and high erosion rate once initiated) despite being difficult to sample. As a collector of runoff, it also has the potential to accumulate soils eroded from adjacent areas, subsequent to storm events, as flows subside. This deposited material will typically be more erodible than the material that it lands on. The deposition and resuspension of material was not simulated in the testing described here because the applied shear stress increases monotonically during testing. The spatial distribution of mean grain size, loss on ignition, and percent fines of Yolo Bypass soils are also presented. Sediment sampling for this effort was performed by DWR; the U.S. Geological Survey (USGS) performed the sample analysis. These data should thus be considered provisional, but the remainder of the data presented here, and this report, have been through the formal U.S. Geological Survey review process. A separate effort has been made by others to develop numerical model results defining the spatially varying, time-dependent hydrodynamics in the Yolo Bypass. These model results are being used to quantify shear stress on the soil surface, which together with the Gust chamber results shown here, are used for the DWR Yolo Bypass D-MCM mercury transport model to compute erosion rates for each time step.

California

Questa baseline and pre-mining ground water investigation: 11. Geochemistry of composited material from alteration scars and mine-waste piles

Composited, surficial material was collected from alteration scars, a less intensely altered site, and mine-waste piles. All samples were analyzed for forty elements by inductively coupled plasma-atomic emission spectrometry, total sulfur and quantitative X-ray diffraction. This work was performed in cooperation with the New Mexico Environment Department.

New Mexico

Engineering geologic conditions at the sinkhole entrance to Logan Cave, Benton County, Arkansas

Logan Cave, located in Benton County, Arkansas, is inhabited by several endangered and threatened species. The cave and surrounding area was designated a National Wildlife Refuge under the control of the U.S. Fish and Wildlife Service (USFWS) in 1989. Cave researchers access the cave through a steep-sided sinkhole entrance, which also is one of the two access points used by endangered bats. There is evidence of instability of one of the entrance slopes that has raised concerns that the entrance could close if slope failure was to occur. At the request of USFWS, we performed an engineering geologic investigation of the sinkhole to evaluate stability of this slope, which is comprised of soil, and other mechanisms of sediment transport into the cave entrance. The investigation included engineering geologic mapping, sampling and laboratory testing of subsurface geologic materials, and slope-stability analysis. We found that the sinkhole slope that extends into the entrance of the cave is comprised of sandy and gravelly soil to the depths explored (6.4 meters). This soil likely was deposited as alluvium within a previous, larger sinkhole. Based on properties of the alluvium, geometry of the slope, and results of finite-element slope-stability analyses, we conclude that the slope is marginally stable. Future failures of the slope probably would be relatively thin and small, thus several would be required to completely close the cave entrance. However, sediment is accumulating within the cave entrance due to foot traffic of those accessing the cave, surface-water erosion and transport, and shallow slope failures from the other sinkhole slopes. We conclude that the entrance will be closed by sediment in the future, similar to another entrance that we identified that completely closed in the past. Several measures could be taken to reduce the potential for closure of the cave entrance, including periodic sediment removal, installation of materials that reduce erosion by foot traffic and surface water, construction of a sediment-retention wall, and excavation of the soil slope. Any measures taken must be carefully planned and executed so that they have no impact on organisms within the cave.

Open-File Report

Effects of transmitter type, tagging method, body size, and temperature on behavior, physiology, and swimming performance of juvenile Chinook salmon (Oncorhynchus tshawytscha)

The objective of this study was to assess the impact of different tagging methods and transmitter types on juvenile salmonid behavior, mortality, physiology, and swimming performance over a range of water temperatures and fish sizes. In Chapter 1, two laboratory experiments were conducted to assess maximum burst-swimming speeds, the probability of gulping air, swimming angles, and the probability of resting on a screen in a swim tunnel. For the burst swim speed experiment, we identified a slightly reduced, but statistically significant difference in burst-swimming speeds for gastric- and surgical-tagged fish implanted with dummy radio and acoustic transmitters. For the swim tunnel experiment, surgical-tagged fish were one-half as likely to gulp air at the surface of the swim tunnel as untagged and gastric-tagged fish. We observed higher probabilities of fish gulping air at the surface for fish with tag ratios greater than 5 percent, suggesting that smaller fish required greater adjustment to their buoyancy than larger fish. We also observed that gastric-tagged fish had, on average, steeper swimming angles than untagged and surgical-tagged fish in the swim tunnel. In Chapter 2, we conducted a field-based laboratory experiment at John Day Dam to assess the sustained swimming performance (i.e., critical swimming speed or U crit ) of in-river migrating subyearling Chinook salmon that were surgically implanted with dummy radio and acoustic transmitters. Statistical tests indicated a significant reduction (about 8.3 centimeters per second [cm/s] or 1 body length per second) in sustained swimming performance for fish implanted with either radio or acoustic transmitters. We also found a significant reduction in U crit of -1.38 cm/s for every 1 degree Celsius (°C) increase in temperature. In Chapter 3, we assessed the effects of water temperature on the physiology, mortality, and swimming performance of juvenile Chinook salmon in laboratory and field experiments. Juvenile Chinook salmon generally showed elevated stress response, elevated mortality, and reduced swimming performance as water temperature increased. We concluded that the water temperature threshold for handling and tagging fish with minimal impacts seems to be near 23 °C. At 25 °C, we documented very high mortality and dramatically reduced swimming performance of tagged fish relative to controls. Telemetry studies conducted at 25 °C would not meet the critical assumption that the transmitter has minimal impacts on the study fish. In the Chapter 4, we evaluated the effects of antenna length and antenna material on the subsequent tag output power, reception, and detection of tagged fish. In a laboratory, we compared the relative signal strengths in water of 150-megahertz transmitters over a range of antenna lengths (from 6 to 30 cm) and materials (one weighing about one-half of the other). The peak relative signal strengths were at 20 and 22 cm, which are about 1 wavelength underwater at the test frequency. The peak relative signal strengths at these antenna lengths were about 50 percent greater than those of 30-cm antennas, a length commonly used in fisheries research.

Open-File Report

Rare earth element sources, end-use demand trends, and hydrometallurgical separations

Rare earth elements are increasing in demand due to the movement towards electrification. In particular, there is a growing need for high performance rare earth permanent magnets for motors and generators used to convert electrical energy to mechanical energy, and vice versa. Current trends in rare earth demand are reviewed and discussed as the specific rare earth metal demand can influence the choice of feed material and process selection. Australia has the potential to increase the supply of these metals. Rare earth sources in Australia are briefly reviewed, with some discussion on the Mary Kathleen Uranium Tailings opportunity. Much of the cost of recovering rare earths is in the challenging chemical separations, some examples are provided using equilibrium chemical thermodynamic diagrams to explain the specific leaching and precipitation reactions.

Conference Paper

Value and validity of earth resources observations from space

Observations of the earth from space can provide overall repetitive views in various regions of the electromagnetic spectrum. Data from such surveys can be used as the basis for more detailed observations from aircraft and on the ground to guide resource exploration, development, and conservation activities. The value of earth resource observations from space has been demonstrated by the practical use of photographs from the Gemini and Apollo spaceflights and particularly by a series of multispectral photographs taken during the flight of Apollo 9. The analysis of those photographs has shown that the performance of the planned Earth Resources Technology Satellite will meet the needs of the resource and environmental community for small-scale repetitive images of the earth in the visible and solar infrared portions of the spectrum and has provided a limited base of material for earth scientists to work with in order to ready themselves for the ERTS data. The validity of earth resource observations from space can be derived by analogy from the successively closer observations of the moon, culminating in repeated physical sampling of the moon's surface. The method of inductive reasoning and analysis used for the moon is the opposite of the normal deductive analysis used on the earth. Adoption of the inductive methods and reasoning for earth observations will provide a framework of broad observations and conclusions leading to the identification of target areas for more detailed observation and will, in time, reduce the costs and time required for surveys dealing with resource and environmental problems.

Hydrological Sciences Bulletin

REMOTE-SENSING MINERAL DISCOVERIES IN THE MOJAVE DESERT OF CALIFORNIA.

As a result of remote sensing studies in the Mojave Desert of California three previously unknown stockwork molybdenum systems have been discovered. It is not known if economic deposits of molybdenum and associated minerals occur in these areas; there is, however, sufficient data to judge that these areas are worthy of further exploration. The purpose of this paper is to present case histories of two of these discoveries. These discoveries have been made from laboratory analyses of Landsat multispectral scanner images to map limonitic materials and from field reconnaissance to determine if the limonite is due to hydrothermal alteration. In those areas that seemed most promising, airborne spectrometer surveys were employed to mapped Al-OH minerals, and audio-magnetotelluric (AMT) and telluric-traversing surveys were performed to obtain information at depth.

Conference Paper

Data-driven prospectivity modelling of sediment-hosted Zn-Pb mineral systems and their critical raw materials

Demand for critical raw materials is expected to accelerate over the next few decades due to continued population growth and the shifting consumption patterns of the global economy. Sedimentary basins are important sources for critical raw materials and new discoveries of sediment–hosted Mississippi Valley–type (MVT) and/or clastic–dominated (CD) Zn–Pb deposits are likely required to mitigate future supply chain disruptions for Zn, Pb, Ag, Cd, Ga, Ge, Sb, and In. Herein we integrate public geoscience datasets using a discrete global grid to system to model the mineral potential for MVT and CD deposits across Canada, the United States of America, and Australia. Statistical analysis of the model results demonstrates that surface–wave tomography and derivative products from satellite gravity datasets can be used to map the most favourable paleo–tectonic settings of MVT and CD deposits inboard of orogenic belts and at the rifted edges of cratonic lithosphere, respectively. Basin development at pre–existing crustal boundaries was likely important for maintaining the low geothermal–gradients that are favourable for metal transport and generating the crustal fluid pathways that were reactivated during ore–formation, as suggested by the statistical association of both sediment–hosted mineral deposit types with the edges of upward–continued gravity and long–wavelength magnetic anomalies. Multivariate statistical analysis demonstrates that the most prospective combination of these geophysical datasets varies for each geological region and deposit type. We further demonstrate that maximum and minimum geological ages, coupled with Phanerozoic paleogeographic reconstructions, represent mappable proxies for the availability of oxidized, brine–generating regions that are the most likely source of ore–forming fluids (e.g., low– to mid–latitude carbonate platforms and evaporites). Ore deposition was likely controlled by interaction between oxidized, low–temperature brines and sulfidic and/or carbonaceous rocks, which, in some cases, can be mapped at the exposed surface or identified using the available rock descriptions. Baseline weights–of–evidence models are based on regional geophysics and are the least impacted by missing surface information but yield relatively poor results, as demonstrated by the low area–under–the–curve (AUC) for the spatially independent test set on the success–rate plot (AUC = 0.787 for MVT and AUC = 0.870 for CD). Model performance can be improved by: (1) using advanced methods that were trained and validated during a series of semi–automated machine learning competitions; and/or (2) incorporating geological and geophysical datasets that are proxies for each component of the mineral system. The best–performing gradient boosting machine models yield higher AUC for the test set (AUC = 0.983 for MVT and AUC = 0.991 for CD) and reduce the search space by >94%. The model results highlight the potential benefits of mapping sediment–hosted mineral systems at continental scale to improve mineral exploration targeting for critical raw materials.

Ore Geology Reviews

Small atoll fresh groundwater lenses respond to a combination of natural climatic cycles and human modified geology

Freshwater lenses underlying small ocean islands exhibit spatial variability and temporal fluctuations in volume, influencing ecologic management. For example, The Palmyra Atoll National Wildlife Refuge harbors one of the few surviving native stands of Pisonia grandis in the central Pacific Ocean, yet these trees face pressure from groundwater salinization, with little basic groundwater data to guide decision making. Adding to natural complexity, the geology of Palmyra was heavily altered by dredge and fill activities. Our study based at this atoll combines geophysical and hydrological field measurements from 2008 to 2019 with groundwater modeling to study the drivers of observed freshwater lens dynamics. Electromagnetic induction (EMI) field data were collected on the main atoll islands over repeat transects in 2008 following ‘strong’ La Niña conditions (wet) and in 2016 during ‘very strong’ El Niño conditions (dry). Shallow monitoring wells were installed adjacent to the geophysical transects in 2013 and screened within the fresh/saline groundwater transition zone. Temporal EMI and monitoring well data showed a strong contraction of the freshwater lens in response to El Niño conditions, and indicated a thicker lens toward the ocean side, an opposite spatial pattern to that observed for many other Pacific islands. On an outer islet where a stand of mature Pisonia trees exist, EMI surveys revealed only a thin (<3 m from land surface) layer of brackish groundwater during El Niño. Numerical groundwater simulations were performed for a range of permeability distributions and climate conditions at Palmyra. Results revealed that the observed atypical lens asymmetry is likely due to more efficient submarine groundwater discharge on the lagoon side as a result of lagoon dredging and filling with high-permeability material. Simulations also predict large decreases (40%) in freshwater lens volume during dry cycles and highlight threats to the Pisonia trees, yielding insight for atoll ecosystem management worldwide.

Science of the Total Environment

The fascinating and complex dynamics of geyser eruptions

Geysers episodically erupt liquid and vapor. Despite two centuries of scientific study, basic questions persist—why do geysers exist? What determines eruption intervals, durations, and heights? What initiates eruptions? Through monitoring eruption intervals, analyzing geophysical data, taking measurements within geyser conduits, performing numerical simulations, and constructing laboratory models, some of these questions have been addressed. Geysers are uncommon because they require a combination of abundant water recharge, magmatism, and rhyolite flows to supply heat and silica, and large fractures and cavities overlain by low-permeability materials to trap rising multiphase and multicomponent fluids. Eruptions are driven by the conversion of thermal to kinetic energy during decompression. Larger and deeper cavities permit larger eruptions and promote regularity by isolating water from weather variations. The ejection velocity may be limited by the speed of sound of the liquid + vapor mixture.

Annual Review of Earth and Planetary Sciences

Time-varying rates of organic and inorganic mass accumulation in southeast Louisiana marshes: Relationships to sea-level anomalies and tropical storms

Louisiana's coastal wetlands are complex systems that require a continuous input of organic and inorganic material to keep pace with relative sea-level rise. Coastal restoration projects such as sediment diversions are being implemented to mitigate land loss and increase availability of inorganic sediment to coastal wetlands, and marshes specifically rely on organic material to build soil volume and maintain surface elevation. Interannual-to-decadal sea-level anomalies such as hurricanes can affect marsh accretion, mineral deposition, and plant productivity. In this light, complex ecogeomorphic feedback controls whether a marsh surface is sustainable or eroded/drowns. This study performs some of the first differential vertical accretion rates (VARs) and organic and inorganic mass accumulation rates (MARs) over time in SE Louisiana marshes determined from the 210 Pb Constant Rate of Supply model, coupled with standard 137 Cs VARs. These accumulation rates over the past ∼100 years were measured from a total of six brackish and salt marsh locations in Barataria Basin near the proposed Mid-Barataria Sediment Diversion. They were then related to interannual sea-surface elevations at Grand Isle, Louisiana, over the last ∼60 years and recorded hurricane activity in the delta. Results show VARs range from 0.63 cm/y to 1.69 cm/y and total MARs range from 0.11 to 0.43 g/cm 2 /y. Temporally, VARs and MARs (total, inorganic, and organic) are characterized by gradual increases in rates with decreasing age along with episodic peaks in VARs and MARs. The findings of this study indicate that no relationship occurs between sea-level anomalies and VARs or organic and inorganic MARs; however, a strong relationship appears to occur between major hurricanes to VAR and MAR contributions. Furthermore, high water content (81 ± 8%) and organic-rich soils in the sediment cores highlight the significance of belowground biomass and associated pore volume in maintaining marsh elevation in the study area.

Louisiana

Level II scour analysis for Bridge 24 (HARDTH00490024) on Town Highway 49, crossing Nichols Brook at Mackville Pond Outlet, Hardwick, Vermont

This report provides the results of a detailed Level II analysis of scour potential at structure HARDTH00490024 on Town Highway 49 crossing Nichols Brook at Mackville Pond Outlet, Hardwick, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the New England Upland section of the New England physiographic province in north-central Vermont. The 10.7-mi 2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is best described as suburban with residences, lawns, trees and roadways. There is a dam 54 feet downstream of the bridge which controls Mackville Pond upstream of the bridge. The vertical drop over the dam is 15 feet. Immediately upstream of the bridge the width of the waterway is 146 feet. The predominant channel bed material is sand with a median grain size (D 50 ) of 0.576 mm (0.00189 ft). The geomorphic assessment at the time of the Level I and Level II site visit on July 25, 1995, indicated that the reach was stable. The Town Highway 49 crossing of Nichols Brook at Mackville Pond Outlet is a 42-ft-long, two-lane bridge consisting of one 38-foot steel-beam span (Vermont Agency of Transportation, written communication, April 3, 1995). The bridge is supported by vertical, concrete abutments with wingwalls on the downstream end of the left abutment and upstream and downstream ends of the right abutment. The channel is not skewed to the opening, but the opening-skew-to-roadway is 5 degrees. Scour protection measures at the site include type-3 stone fill (less than 48 inches diameter) on the upstream side of the left roadway embankment and at the upstream end of the left abutment. Type-2 stone fill (less than 36 inches diameter) was on the upstream right roadway embankment. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others, 1995). Total scour at a highway crossing is comprised of three components: 1) long-term streambed degradation; 2) contraction scour (due to accelerated flow caused by a reduction in flow area at a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute depths for contraction and local scour and a summary of the results of these computations follows. Contraction scour for all modelled flows ranged from 4.7 to 21.0 ft. The worst-case contraction scour occurred at the 500-year discharge. Abutment scour at the left abutment ranged from 13.3 to 15.8 ft. with the worst-case occurring at the 500-year discharge. Abutment scour at the right abutment ranged from 8.1 to 9.8 ft. with the worst-case occurring at the incipient roadway-overtopping discharge. Additional information on scour depths and depths to armoring are included in the section titled “Scour Results”. Scouredstreambed elevations, based on the calculated scour depths, are presented in tables 1 and 2. A cross-section of the scour computed at the bridge is presented in figure 8. Scour depths were calculated assuming an infinite depth of erosive material and a homogeneous particlesize distribution. It is generally accepted that the Froehlich equation (abutment scour) gives “excessively conservative estimates of scour depths” (Richardson and others, 1995, p. 47). Usually, computed scour depths are evaluated in combination with other information including (but not limited to) historical performance during flood events, the geomorphic stability assessment, existing scour protection measures, and the results of the hydraulic analyses. Therefore, scour depths adopted by VTAOT may differ from the computed values documented herein.

Vermont

Level II scour analysis for Bridge 36 (RANDTH00480036) on Town Highway 48, crossing Snows Brook, Randolph, Vermont

This report provides the results of a detailed Level II analysis of scour potential at structure RANDTH00480036 on town highway 48 crossing Snows Brook, Randolph, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province of central Vermont. The 3.72-mi2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover is forest. In the study area, Snows Brook has an incised, sinuous channel with a slope of approximately 0.03 ft/ft, an average channel top width of 27 ft and an average channel depth of 3 ft. The predominant channel bed material is cobble with a median grain size (D50) of 72.7 mm (0.238 ft). The geomorphic assessment at the time of the Level I and Level II site visit on August 9, 1994, indicated that the reach was laterally unstable. The town highway 48 crossing of Snows Brook is a 32-ft-long, two-lane bridge consisting of one 28-foot concrete span (Vermont Agency of Transportation, written communication, July 29, 1994). The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 40 degrees to the opening while the opening-skew-toroadway is 45 degrees. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others, 1995). Total scour at a highway crossing is comprised of three components: 1) long-term streambed degradation; 2) contraction scour (due to accelerated flow caused by a reduction in flow area at a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute depths for contraction and local scour and a summary of the results of these computations follows. Contraction scour for all modelled flows ranged from 0.0 to 0.8 ft. The worst-case contraction scour occurred at the 500-year discharge. Abutment scour ranged from 6.1 to 11.6 ft. The worst-case abutment scour occurred at the incipient-overtopping discharge, which was 50 cfs lower than the 500-year discharge. Additional information on scour depths and depths to armoring are included in the section titled “Scour Results”. Scouredstreambed elevations, based on the calculated scour depths, are presented in tables 1 and 2. A cross-section of the scour computed at the bridge is presented in figure 8. Scour depths were calculated assuming an infinite depth of erosive material and a homogeneous particlesize distribution. It is generally accepted that the Froehlich equation (abutment scour) gives “excessively conservative estimates of scour depths” (Richardson and others, 1995, p. 47). Usually, computed scour depths are evaluated in combination with other information including (but not limited to) historical performance during flood events, the geomorphic stability assessment, existing scour protection measures, and the results of the hydraulic analyses. Therefore, scour depths adopted by VTAOT may differ from the computed values documented herein.

Vermont

Level II scour analysis for Bridge 30 (MNTGTH00410030) on Town Highway 41, crossing the Trout River, Montgomery, Vermont

This report provides the results of a detailed Level II analysis of scour potential at structure MNTGTH00410030 on Town Highway 41 crossing the Trout River, Montgomery, Vermont (figures 1–8). A Level II study is a basic engineering analysis of the site, including a quantitative analysis of stream stability and scour (U.S. Department of Transportation, 1993). Results of a Level I scour investigation also are included in Appendix E of this report. A Level I investigation provides a qualitative geomorphic characterization of the study site. Information on the bridge, gleaned from Vermont Agency of Transportation (VTAOT) files, was compiled prior to conducting Level I and Level II analyses and is found in Appendix D. The site is in the Green Mountain section of the New England physiographic province in northern Vermont. The 46.1-mi 2 drainage area is in a predominantly rural and forested basin. In the vicinity of the study site, the surface cover on the left bank is pasture upstream and downstream of the bridge with dense woody vegetation along the immediate banks. The upstream and downstream right bank surface cover is brush. In the study area, the Trout River has an incised, meandering channel with a slope of approximately 0.005 ft/ft, an average channel top width of 130 ft and an average bank height of 6 ft. The channel bed material ranges from sand to cobble with a median grain size (D 50 ) of 68.3 mm (0.224 ft). The geomorphic assessment at the time of the Level I and Level II site visit on June 27, 1995, indicated that the reach was laterally unstable. At this site there is visible lateral channel movement upstream and downstream of the bridge with meanders and cut banks. The Town Highway 41 crossing of the Trout River is a 90-ft-long, one-lane bridge consisting of one 87-foot steel-beam span (Vermont Agency of Transportation, written communication, August 3, 1994). The opening length of the structure parallel to the bridge face is 86.7 ft.The bridge is supported by vertical, concrete abutments with wingwalls. The channel is skewed approximately 10 degrees to the opening while the opening-skew-toroadway is 0 degrees. A scour hole 4.5 ft deeper than the mean thalweg depth, was observed 35 ft downstream of the bridge during the Level I assessment. The scour counter-measures at the site included type-1 stone fill (less than 12 inches diameter) at the upstream left wingwall, at the left abutment, along the upstream right bank, and at the upstream end of the downstream left wingwall. There was also type-2 stone fill (less than 36 inches diameter) along the downstream right bank. Additional details describing conditions at the site are included in the Level II Summary and Appendices D and E. Scour depths and recommended rock rip-rap sizes were computed using the general guidelines described in Hydraulic Engineering Circular 18 (Richardson and others, 1995). Total scour at a highway crossing is comprised of three components: 1) long-term streambed degradation; 2) contraction scour (due to accelerated flow caused by a reduction in flow area at a bridge) and; 3) local scour (caused by accelerated flow around piers and abutments). Total scour is the sum of the three components. Equations are available to compute depths for contraction and local scour and a summary of the results of these computations follows. Contraction scour for all modelled flows was 0.0 ft. Abutment scour ranged from 2.5 to 8.9 ft. The worst-case abutment scour occurred at the 500-year discharge. The computed scour depths are well above the pile depths set in bedrock. Additional information on scour depths and depths to armoring are included in the section titled “Scour Results”. Scouredstreambed elevations, based on the calculated scour depths, are presented in tables 1 and 2. A cross-section of the scour computed at the bridge is presented in figure 8. Scour depths were calculated assuming an infinite depth of erosive material and a homogeneous particlesize distribution. It is generally accepted that the Froehlich equation (abutment scour) gives “excessively conservative estimates of scour depths” (Richardson and others, 1995, p. 47). Usually, computed scour depths are evaluated in combination with other information including (but not limited to) historical performance during flood events, the geomorphic stability assessment, existing scour protection measures, and the results of the hydraulic analyses. Therefore, scour depths adopted by VTAOT may differ from the computed values documented herein.

Vermont