SEARCH · Search USGS

Results for “Marine Progress Series”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

197 records · Page 11Linked to original sources

USGS2017

Inner-shelf ocean dynamics and seafloor morphologic changes during Hurricane Sandy

Hurricane Sandy was one of the most destructive hurricanes in US history, making landfall on the New Jersey coast on Oct 30, 2012. Storm impacts included several barrier island breaches, massive coastal erosion, and flooding. While changes to the subaerial landscape are relatively easily observed, storm-induced changes to the adjacent shoreface and inner continental shelf are more difficult to evaluate. These regions provide a framework for the coastal zone, are important for navigation, aggregate resources, marine ecosystems, and coastal evolution. Here we provide unprecedented perspective regarding regional inner continental shelf sediment dynamics based on both observations and numerical modeling over time scales associated with these types of large storm events. Oceanographic conditions and seafloor morphologic changes are evaluated using both a coupled atmospheric-ocean-wave-sediment numerical modeling system and observation analysis from a series of geologic surveys and oceanographic instrument deployments focused on a region offshore of Fire Island, NY. The geologic investigations conducted in 2011 and 2014 revealed lateral movement of sedimentary structures of distances up to 450 m and in water depths up to 30 m, and vertical changes in sediment thickness greater than 1 m in some locations. The modeling investigations utilize a system with grid refinement designed to simulate oceanographic conditions with progressively increasing resolutions for the entire US East Coast (5-km grid), the New York Bight (700-m grid), and offshore of Fire Island, NY (100-m grid), allowing larger scale dynamics to drive smaller scale coastal changes. Model results in the New York Bight identify maximum storm surge of up to 3 m, surface currents on the order of 2 ms-1 along the New Jersey coast, waves up to 8 m in height, and bottom stresses exceeding 10 Pa. Flow down the Hudson Shelf Valley is shown to result in convergent sediment transport and deposition along its axis. Modeled sediment redistribution along Fire Island showed erosion across the crests of inner shelf sand ridges and sedimentation in adjacent troughs, consistent with the geologic observations.

Continental Shelf Research↗

USGS2007

Surficial sediment character of the New York-New Jersey offshore continental shelf region: A GIS compilation

Broad continental shelf regions such as the New York Bight are the product of a complex geologic history and dynamic oceanographic processes, dominated by the Holocene marine transgression (>100 m sea-level rise) following the end of the last Pleistocene ice advance ~ 20,000 years ago. The area of the U.S. Exclusive Economic Zone (U.S. EEZ) territory, extending 200 nautical miles seaward from the coast, is larger than the continental U.S. and contains submerged landforms that provide a variety of natural functions and societal benefits, such as: critical habitats for fisheries, ship navigation and homeland security, and engineering activities (i.e. oil and gas platforms, pipeline and cable routes, potential wind-energy-generation sites). Some parts of the continental margins, particularly inner-continental shelf regions, also contain unconsolidated hard-mineral deposits such as sand and gravel that are regarded as potential aggregate resources to meet or augment needs not met by onshore deposits (Williams, 1992). The present distribution of surficial sediment off the northeastern United States is shaped from the deposits left by the last glaciation and reflects the cumulative effects of sediment erosion, transport, sorting, and deposition by storm and tidal processes during the Holocene rise in sea level. As a result, the sediments on the sea floor represent both an historical record of former conditions and a guide to possible future sedimentary environments. The U.S. Geological Survey (USGS) through the Coastal and Marine Geology Program, in cooperation with the University of Colorado and other partners, has compiled extant sediment character and textural data as well as other geologic information on the sea floor from all regions around the U.S. into the usSEABED data system (Reid and others, 2005; Buczkowski and others, 2006; Reid and others, 2006). The usSEABED system, which contains information on sediment grain size and lithology for more than 340,500 stations within the U.S. EEZ. has been developed and populated with data as part of the USGS Marine Aggregate Resources and Processes and the National Benthic Habitats projects in order to provide the base-line data needed to update the current maps of offshore surficial geologic character and sediment distribution. The maps are also used to characterize benthic sea floor environments important for marine ecosystems. U.S. Geological Survey, Data Series 118 (Reid and others, 2005), of the usSEABED data release series, represents the combined efforts of the USGS and several other government agencies to provide a unified resource for accessing and preserving records of U.S. east coast sea floor geologic information and sediment texture data. For this present report, we have chosen to focus on the New York-New Jersey region, an area that has been intensely studied by the USGS for many years to address many complex issues. This report illustrates the uses of the usSEABED database for GIS applications, while offering additional insight into the resources and data available from the USGS and its collaborative institutions. This report is based on data contained in U.S. Geological Survey Data Series 118 (Reid and others, 2005) and shows an assortment of example GIS products that are possible using usSEABED. All data are intended to be GIS-ready and should not require any additional cleanup, formatting, or renaming of fields in order to use the data in a Geographic Information System. This project employs the Environmental Systems Research Institute's (ESRI) ArcView™ software. Many of these maps were made as part of the ongoing USGS study to assess marine aggregate resources offshore New York and New Jersey, but these maps can serve many other purposes. The marine science community, educators, students and others are encouraged to use these data to generate GIS products for their own purposes. The objectives of the Marine Aggregate Resources and Processes project are to produce a series of new geologic maps and reports of the sea floor that will provide scientific insights into the character and geologic development of U.S. continental margins and to use these maps and information to assess the potential availability of offshore sand and gravel resources. The mapping and aggregate resource assessments are being conducted on a national scale using the usSEABED data base as described in Williams and others (2003). Potential uses for these data include: (1) defining the geological variability of the sea floor in relation to benthic habitat diversity; (2) improving our understanding of the processes that control the distribution and transport of bottom sediments and benthic habitats; (3) locating aggregate resources for beach nourishment and industrial applications; and (4) providing a detailed geospatial framework for future marine science research, monitoring, and management activities. The initial assessments are in progress for the New York Bight and Louisiana offshore areas.

New Jersey, New York↗

USGS2010

Biosecurity Plan for Palmyra Atoll

This Biosecurity Plan for Palmyra Atoll was developed for The Nature Conservancy (TNC) Palmyra Program to refine and expand goals and objectives developed through the Conservation Action Plan process. The Biosecurity Plan is one in a series of adaptive management plans designed to achieve TNC's mission toward the protection and enhancement of native wildlife and habitat. The Biosecurity Plan focuses on ecosystem security, and specifically identifies and addresses issues related to non-native and potentially invasive species. The Plan attempts to identify pathways of invasion and strategies for preventing or reducing new introductions. Overall, the Biosecurity Plan provides a framework to implement and track the progress of conservation and restoration goals related to non-native species on Palmyra Atoll. Palmyra Atoll is one of the Northern Line Islands in the Pacific Ocean southwest of the Hawai`ian Islands. It consists of many heavily vegetated islets arranged in a horseshoe pattern around four lagoons and surrounded by a coral reef. At present, Palmyra Atoll harbors various non-native or invasive species in the terrestrial and marine ecosystems. The most notable examples of terrestrial invasive species include coconut trees (Cocos nucifera) and black rats (Rattus rattus). Although it is unclear whether they are non-native, coconut trees are currently the most dominant plant across Palmyra Atoll. They compete with native plant species for space and resources, and are potentially detrimental to seabirds dependent on native vegetation. Black rats are known to predate ground-nesting seabirds and are likely responsible for the lack of burrowing seabird reproduction on Palmyra Atoll. The most notable example of a marine invasive species is the corallimorph (Rhodactis howsei). Although Rhodactis howsei is a native species, it can take advantage of human-altered habitat and significantly change the natural habitat by aggressively outcompeting native corals. Although the extent and impacts of these and other non-native and (or) invasive species are not fully understood, they are clearly a threat to the native species and overall ecosystem integrity of Palmyra Atoll. In fact, non-native invasive species have been considered the most important threat to ecosystems in Hawai`i and the second most important threat to biodiversity world-wide. Palmyra Atoll is somewhat protected because of its remote location, but there are still potential pathways for the introduction of non-native and possibly invasive species. With the continued influx of aircraft and ocean vessels and their contents to and around Palmyra Atoll, we anticipate many more concerns related to the import and spread of non-native invasive species in the future. In terms of ecosystem security, prevention is the most effective and efficient tool for managing invasive species. There are various potential pathways for introduction and spread of non-native species within Palmyra Atoll's terrestrial and marine ecosystems. Identification of these pathways provides a first step in preventing introductions. We also recommend establishing, enhancing, and enforcing quarantine protocols to prevent future non-native species invasions. Other critical steps to minimize the impacts and spread of invasive species include early detection through inventory and monitoring, as well as containment, control, and management of non-native species already established at Palmyra Atoll. These efforts in combination with research and education will serve to inform management decisions related to ecosystem integrity. Along with reinstating ecosystem security, this Biosecurity Plan aims to evaluate new risk factors related to non-native and potentially invasive species. To that end, an adaptive management process of audit and review is highly recommended to ensure the implementation and efficacy of the management practices outlined above. In addition, it will be important to identify high r

Open-File Report↗

USGS1979

Marine terrace deformation, San Diego County, California

The NW—SE trending southern California coastline between the Palos Verdes Peninsula and San Diego roughly parallels the southern part and off-shore extension of the dominantly right-lateral, strike-slip, Newport—Inglewood fault zone. Emergent marine terraces between Newport Bay and San Diego record general uplift and gentle warping on the northeast side of the fault zone throughout Pleistocene time. Marine terraces on Soledad Mt. and Point Loma record local differential uplift (maximum 0.17 m/ka) during middle to late Pleistocene time on the southwest side of the fault (Rose Canyon fault) near San Diego. The broad Linda Vista Mesa (elev. 70–120 m) in the central part of coastal San Diego County, previously thought to be a single, relatively undeformed marine terrace of Plio—Pleistocene age, is a series of marine terraces and associated beach ridges most likely formed during sea-level highstands throughout Pleistocene time. The elevations of the terraces in this sequence gradually increase northwestward to the vicinity of San Onofre, indicating minor differential uplift along the central and northern San Diego coast during Pleistocene time. The highest, oldest terraces in the sequence are obliterated by erosional dissection to the northwest where uplift is greatest. Broad, closely spaced (vertically) terraces with extensive beach ridges were the dominant Pleistocene coastal landforms in central San Diego County where the coastal slope is less than 1% and uplift is lowest. The beach ridges die out to the northwest as the broad low terraces grade laterally into narrower, higher, and more widely spaced (vertically) terraces on the high bluffs above San Onofre where the coastal slope is 20–30% and uplift is greatest. At San Onofre the terraces slope progressively more steeply toward the ocean with increasing elevation, indicating continuous southwest tilt accompanying uplift from middle to late Pleistocene time. This southwest tilt is also recorded in the asymmetrical valleys of major local streams where strath terraces occur only on the northeast side of NW—SE-trending valley segments. The deformational pattern (progressively greater uplift to the northwest with slight southwest tilt) recorded in the marine and strath terraces of central and northern coastal San Diego County conforms well with the historic pattern derived by others from geodetic data. It is not known how much of the Santa Ana structural block (between the Newport—Inglewood and the Elsinore fault zones) is affected by this deformational pattern.

California↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS1934

Part 1. The coal field from Gallup eastward toward Mount Taylor, with a measured section of pre-Dakota(?) rocks near Navajo Church

The report describes the geology and coal deposits of the southwestern part of the San Juan Basin, N.Mex. The field lies northeast of the town of Gallup, on the Atchison, Topeka & Santa Fe Railway, and is an irregular tract of about 630 square miles in central and west-central McKinley County; it includes the southeast corner of the Navajo Indian Reservation. Settlement is confined to the white families at a few trading posts and the Indian agency at Crown Point and to scattered Navajo Indians. The land forms, drainage, vegetation, and climate are those typical of the highland in the semiarid Southwest. The investigation disclosed complicated relations of the Mancos shale and the Mesaverde formation, of Upper Cretaceous age, and a marked variation in the stratigraphic boundary between them. At the western edge of the field, as in the adjoining Gallup coal district, the Mancos consists of about 725 feet of marine shale almost wholly of Benton (lower Colorado) age. It is overlain by about 1,800 feet of chiefly estuarine and fluviatile deposits that represent the lower part of the Mesaverde formation. In ascending order the Mesaverde here consists of the Gallup sandstone member (which includes local lenses of valuable coal), the Dilco coal member, the Bartlett barren member, the Gibson coal member, and the Allison barren member. Eastward through the field the outcrops extend obliquely across the trend of old shore lines out into the ancient basin of marine deposition, and some of the beds consequently show a progressive lateral change into rocks of littoral and marine types. The Gallup sandstone member is in part replaced by marine shale of the Mancos. The upper part of the Dilco coal member is replaced by the Dalton sandstone member, and still farther east the bottom of the Dalton and the top of the remaining Dilco are replaced by the Mulatto tongue of the Mancos shale. The Bartlett barren member becomes coal-bearing and thus merges with the Gibson. The Gibson coal member is split by the thick Hosta sandstone member, which toward the east and northeast is in turn split by the Satan tongue of the Mancos shale, of upper Niobrara (upper Colorado) age. In general the structure of the rocks is simple, showing a gentle northward dip into the San Juan Basin. At the west edge of the field the rocks dip steeply west in the north end of the prominent ridges known locally as the Hogback. In the eastern part there is a series of pronounced folds, whose crests and troughs retain the gentle basinward dip but whose limbs are steep monoclines that in places are faulted. The coal is of subbituminous rank and of fairly good grade. The coal beds are very irregular and lenticular. Those in the Gallup and Dilco members are of comparatively little importance, reaching a thickness of 4 to 5 feet in only a few places and, in general, being less than 3 feet thick. The coal beds of the Gibson, especially of its lower part, are more numerous and thicker, measurements of 4 to 6 feet thick being fairly common and one bed showing a thickness of 12 feet for more than a mile. No commercial mining has been undertaken in this field, but a few small mines have been used to supply trading posts and the Indian schools at Crown Point and Tohatchi.

New Mexico↗

USGS1997

Map showing outcrop of the coal-bearing units and land use in the Gulf Coast region

This map is a preliminary compilation of the outcrop geology of the known coal-bearing units in the Gulf Coast Coal region. The map has been compiled for use in the National Coal Resource Assessment Project currently being conducted by the U.S. Geological Survey, and will be updated as the assessment progresses. The purpose of the map is to show the distribution of coal-bearing rocks in the Gulf Coastal Plain Region and to show stratigraphic correlations, transportation network, fossil-fuel burning power plants, and federally managed lands in the region. It is hoped that this map may aid coal exploration and development in the region. Geologic contacts were digitized from paper copies of the maps listed in the reference section below. The primary source of information was the 1:500,000-scale state geology map series, but larger scale maps were use to better define certain areas, notably the Jackson-Claiborne contact in western Kentucky and Tennessee for example (Olive, 1980). Contacts along state boundaries were modified to best-fit information available from the border areas. Note that coal distribution in the mapped units is not uniform. For example, the Jackson Group contains coal in Texas, but in Mississippi is not presently known to contain significant coal deposits. The unit is widespread and in part non-marine and thus of potential future interest. In contrast, the Jackson Group is not shown in Georgia where it is mostly marine and residuum (weathered material) at the surface. Tertiary age coal has also been noted in the Vicksburg Group (Oligocene) of Louisiana and Mississippi, but is not shown on this map. Contacts with mapped surficial units are not always shown. The locations of coal mine permit boundaries are based on information available at the time of publication and were obtained from the Division of Surface Mining and Reclamation, Railroad Commission of Texas, Austin, and the Injection and Mining Division, Department of Natural Resources, Baton Rouge, Louisiana. The correlation of map units and formation names generally follow Galloway and others (1991). We have placed the Paleocene-Eocene boundary in the middle of the Calvert Bluff Formation in Texas based on unpublished pollen biostratigraphy reports (N.O. Fredericksen, unpublished data, 1993; D.J. Nichols, unpublished data, 1996).

Alabama, Arkansas, Georgia, Florida, Kansas, Kentu↗

USGS2012

Bathymetry and digital elevation models of Coyote Creek and Alviso Slough, South San Francisco Bay, California

In 2010, the U.S. Geological Survey (USGS), Pacific Coastal and Marine Science Center completed three cruises to map the bathymetry of the main channel and shallow intertidal mudflats in the southernmost part of south San Francisco Bay. The three surveys were merged to generate comprehensive maps of Coyote Creek (from Calaveras Point east to the railroad bridge) and Alviso Slough (from the bay to the town of Alviso) to establish baseline bathymetry prior to the breaching of levees adjacent to Alviso and Guadalupe Sloughs as part of the South Bay Salt Pond Restoration Project ( http://www.southbayrestoration.org ). Since 2010, the USGS has conducted fourteen additional surveys to monitor bathymetric change in this region as restoration progresses. The bathymetric surveys were conducted using the state-of-the-art research vessel R/V Parke Snavely outfitted with an interferometric sidescan sonar for swath mapping in extremely shallow water. This publication provides high-resolution bathymetric data collected by the USGS. For the 2010 baseline survey we have merged the bathymetry with aerial lidar data that were collected for the USGS during the same time period to create a seamless, high-resolution digital elevation model (DEM) of the study area. The series of bathymetric datasets are provided at 1 m resolution and the 2010 bathymetric/topographic DEM at 2 m resolution. The data are formatted as both X, Y, Z text files and ESRI Arc ASCII files that are accompanied by Federal Geographic Data Committee (FGDC) compliant metadata.

California↗

USGS2026

From understanding to action: Integrating new and old methodologies to manage marine infectious disease

Marine diseases can have far-reaching effects on population, community and ecosystem health; however, our ability to track, predict and manage these diseases has, historically, been poor. As a result, the fields of disease ecology and epidemiology have developed at a slower pace for marine than terrestrial systems [ 1 ]. New methodologies, including genomic tools for diagnostics [ 2 , 3 ], transcriptomic tools for measuring host and pathogen responses to infection (e.g. [ 4 , 5 ]), regional oceanic modelling systems that estimate environmental conditions influencing pathogen dispersal and disease progression [ 6 ], artificial intelligence methods for quantifying pathology from images (e.g. [ 7 ]) and advanced disease modelling techniques [ 8 , 9 ] are precipitating a rapid increase in our understanding of marine pathosystems. In 2016, these efforts led to the first special issue of Philosophical Transactions of the Royal Society B ( Marine diseases, volume 371, issue 1689) focused entirely on marine disease ecology and evolution, and in 2020, the first book, Marine disease ecology, was devoted to this topic [ 10 ]. This special issue, focused on marine disease management , is being published a decade after the first Philosophical Transactions special issue on marine diseases. The shift to a management focus reflects an urgent need for management strategies to address high-impact diseases and the rapid methodological advances that have resulted. The papers included in this issue demonstrate the value of combining classical approaches (e.g. routine disease surveillance, reductionistic pathogen challenge trials, rapid throughput diagnostics) with cutting-edge technologies (e.g. high-resolution oceanographic models, Bayesian models, replicated transcriptomic studies) to identify drivers of disease, quantify impacts and suggest management strategies.

Philosophical Transactions of the Royal Society, S↗

USGS1970

Development of the Astoria Canyon-Fan physiography and comparison with similar systems

A detailed bathymetric study of Astoria Canyon and Astoria Fan provides a model for typical submarine canyon-fan systems. The present canyon head is 9 miles (17 km) west of the Columbia River mouth but buried Pleistocene channels appear to have connected the two features in the past. The canyon, which is distinguished by its relief, V-shaped profiles, and numerous tributaries, winds sinuously and is coincident with apparent structural trends across the continental shelf and slope. At the fan apex, the canyon mouth merges smoothly into Astoria Channel, which is characterized by its U-shaped profiles, lower walls of even height, and levee development. Astoria Channel and the fan valley at the base of the continental slope are the most recently active of a series of main fan valleys that appear to have: ( 1 ) progressively “hooked left”; ( 2 ) migrated from north to south across the fan during its formation; and ( 3 ) been partly responsible for the asymmetrical shape of the fan. The deep, narrow upper fan valleys that characterize the steep (> 1:100, or 0°35′) and rough (10–30 fathoms, or 18–55 m) upper fan surface break into distributaries on the middle fan, where there is the sharpest change in gradient. The main valleys become broader and shallower down the fan, while the generally concave fan surface grades to nearly a flat seafloor (to gradients < 1:1000, or 0°0.5′), (< 10 fathoms, or 18 m relief). Similarity of Astoria Canyon-Fan system with other deep-sea fan and alluvial fan systems, suggests the hypothesis that size of drainage basin, sediment size, and sediment load control the size, gradient, and valley development of any fan system. Data from bathymetry, seismic refraction stations, and sediment load of the Columbia River indicate that the cutting of Astoria Canyon and the deposition of the unconsolidated sediment layer forming Astoria Fan could have been accomplished during the Pleistocene. A similar history can be suggested for other major submarine canyon-fan systems.

Oregon↗

USGS2026

The impacts of co-circulating pathogens in Pacific herring depend on interactions between viral life-cycle traits and transmission parameters, highlighting interdependencies between pathogen epizootics

The average host susceptibility decreases as the epizootic progresses because easily infected hosts are first removed from the population. While host susceptibility is pathogen-specific, it is likely that host susceptibility is correlated between different pathogens, so that co-circulating pathogens may have reciprocal impacts on their epidemics. However, despite well-documented examples of concomitant infections in marine hosts, reciprocal epizootic effects have not been documented in wild marine organisms. We quantify reciprocal impacts between viral haemorrhagic septicaemia and viral erythrocytic necrosis in Pacific herring ( Clupea pallasii ) using field and laboratory work. We show that the causative viruses for both diseases circulate through herring populations and that infection with one pathogen has negative impacts on the epizootic and infection characteristics of the other pathogen, suggesting positive correlations in the susceptibility to infection between pathogens. We then use simulations of a two-strain pathogen model to show that the impact of the correlation is modulated by transmission parameters, such as the incubation period and the initial transmission rate. Our work shows that co-occurring epizootics pose a management challenge because single-pathogen management actions may amplify the epizootics of the non-targeted pathogen. This study provides a framework to evaluate the consequences of reciprocal epizootic impacts through field, experimental and modelling work.

Washington↗

USGS2007

Proceedings of the Fourth Glacier Bay Science Symposium

Foreword Glacier Bay was established as a National Monument in 1925, in part to protect its unique character and natural beauty, but also to create a natural laboratory to examine evolution of the glacial landscape. Today, Glacier Bay National Park and Preserve is still a place of profound natural beauty and dynamic landscapes. It also remains a focal point for scientific research and includes continuing observations begun decades ago of glacial processes and terrestrial ecosystems. In recent years, research has focused on glacial-marine interactions and ecosystem processes that occur below the surface of the bay. In October 2004, Glacier Bay National Park convened the fourth in a series of science symposiums to provide an opportunity for researchers, managers, interpreters, educators, students and the general public to share knowledge about Glacier Bay. The Fourth Glacier Bay Science Symposium was held in Juneau, Alaska, rather than at the Park, reflecting a desire to maximize attendance and communication among a growing and diverse number of stakeholders interested in science in the park. More than 400 people attended the symposium. Participants provided 46 oral presentations and 41 posters covering a wide array of disciplines including geology, glaciology, oceanography, wildlife and fisheries biology, terrestrial and marine ecology, socio-cultural research and management issues. A panel discussion focused on the importance of connectivity in Glacier Bay research, and keynote speakers (Gary Davis and Terry Chapin) spoke of long-term monitoring and ecological processes. These proceedings include 56 papers from the symposium. A summary of the Glacier Bay Science Plan-itself a subject of a meeting during the symposium and the result of ongoing discussions between scientists and resource managers-also is provided. We hope these proceedings illustrate the diversity of completed and ongoing scientific studies, conducted within the Park. To this end, we invited all presenters to submit brief technical summaries of their work, to capture the gist of their study and its main findings without an overload of details and methodology. We also asked authors to include a few words on the management implications of their work to help bridge the gap between scientists and managers in understanding how specific research questions may translate to management practice. Papers in this volume are laid out by subject matter, from terrestrial and freshwater subjects to glacial-marine geology, to the ecology of marine animals and ending with risk assessment, human impacts and science-management considerations. In summary, we hope the proceedings will serve as a useful reference to completed and ongoing studies in Glacier Bay National Park, and thereby provide park enthusiasts, scientists, and managers with a road map of scientific progress.

Scientific Investigations Report↗

USGS2015

California State Waters Map Series — Offshore of San Francisco, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of San Francisco map area is centered on the City of San Francisco and the Golden Gate channel, a waterway that connects the Pacific Ocean to the San Francisco Bay between the Marin Headlands and San Francisco Peninsula. The San Francisco Bay Area is the second-largest urban area on the U.S. West Coast with a combined population of over seven million. The bay supports several major cargo ports and the Port of San Francisco’s Fisherman’s Wharf is a major center for Northern California’s commercial and sport fishing fleets. The coastal part of the map area predominantly consists of high bluffs and vertical sea cliffs shaped by uplift and erosion of the Marin Headlands and San Francisco Peninsula east of the San Andreas and San Gregorio Fault Zones. The seafloor in the map area extends from the shoreline and western end of the Golden Gate channel to water depths of about 30 to 50 m, except for the San Andreas graben area, where water depths reach 75 m. Sea-level rise, tidal currents, and tectonics have shaped bathymetry in the map area. During the Last Glacial Maximum, Sea level was about 125 m lower than present day and the shoreline was more than 45 km west of San Francisco near the Farallon Islands. At that time, the map area was part of a large alluvial plain connected to a drainage basin that included much of California’s Central Valley. A river system flowed westward through the narrows of the Golden Gate channel and an alluvial valley bounded to the north and south by bedrock highlands, including the present-day Pacifica-Pescadero and Bolinas shelves. Rising seas entered the Golden Gate about 11,000 to 10,000 years ago and subsequent marine flooding led to progressive growth of the San Francisco Bay. Strong tidal currents, accelerating through the relatively narrow Golden Gate, have scoured the bedrock channel to a depth of 113 m. East and west of the channel, tidal currents decelerate and form large fields of sand waves. Offshore of the Marin Headlands, eastward transfer of right-lateral fault slip in a complex of faults northwest of the map area has caused extension and the formation of a sediment basin called the San Andreas graben on the continental shelf. The accommodation space created by extension on the shelf and the proximity to sediment transported to the ocean through San Francisco Bay results in a sand-dominated offshore shelf environment. Seafloor habitats in the Offshore of San Francisco map area comprise significant sand-dominated sediment habitat with sand wave and ripple bedforms indicative of high wave and current energy. North of the Golden Gate, biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. For the first time in 65 years, Pacific Harbor Porpoise returned to San Francisco Bay in 2009. On the coast north of the Golden Gate, the large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high wave-energy environments. Common fish species found in the kelp beds and rocky reefs include painted greenling, kelp greenling, lingcod, and several varieties of rockfish. Circulation over the continental shelf in the Offshore of San Francisco map area is dominated by the southward-flowing California Current, an eastern limb of the North Pacific Gyre that flows from Oregon to Baja California. At its midpoint offshore of central California, the California Current transports subarctic surface waters southeastward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. Ocean temperatures offshore of central California have increased over the past 50 years, driving an ecosystem shift from the productive subarctic regime towards a depopulated subtropical environment.

California↗

USGS2015

California State Waters map series — Offshore of Pigeon Point, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Pigeon Point map area is located in central California, on the Pacific Coast about 50 km south of San Francisco and 25 km northwest of Santa Cruz. The onshore part of the map area is sparsely populated. The nearest significant onshore cultural center is Pescadero, an unincorporated community with a population of well under 1,000. The hilly coastal area is virtually undeveloped, used primarily for agricultural or as grazing land for sheep and cattle. Agriculture is limited to the coastal uplifted Pleistocene marine terraces and upper Pleistocene alluvial fan deposits, which lie between the shoreline and the northwest-trending Santa Cruz Mountains. The map area is cut by the San Gregorio Fault Zone, and is located a few kilometers southwest of the San Andreas Fault Zone. Coastal uplift and folding in the map area has been attributed to a westward bend in the San Andreas Fault Zone and also to right-lateral movement along the San Gregorio Fault Zone. The irregular coastal geomorphology of this area, which consists of low, rocky cliffs and sparse, small pocket beaches backed by low, terraced hills, is partly attributable to this ongoing deformation. The shelf in the map area is underlain by variable amounts (0 to 20 m) of upper Quaternary nearshore and shelf sediments deposited as sea level fluctuated in the late Pleistocene. The southern part of the map is characterized by the presence of uplifted bedrock that has been linked to a local zone of transpression in the San Gregorio Fault Zone. This uplift, coupled with high wave energy, has resulted in little or no sediment cover in this area where exposures of bedrock are present at water depths of as much as 45 m. The thickest deposits of sediment are located in the northern part of the map area. Coastal sediment transport in the map area is characterized by north-to-south littoral transport of sediment that is derived mainly from streams in the Santa Cruz Mountains and also from local coastal erosion. Shoreline-change studies indicate long-term erosion; within the region between San Francisco and Davenport, the highest long- and short-term coastal-erosion rates occur in the map area, just north of Point Año Nuevo. During the last approximately 300 years, as much as 18 million cubic yards (14 million cubic meters) of sand-sized sediment has been eroded from the area between Año Nuevo Island and Point Año Nuevo and transported south. Once widened by this pulse of eroded sediment, beaches south of Point Año Nuevo are now narrowing as the tail end of this mass of sand progresses farther south. The Offshore of Pigeon Point map area lies within the cold-temperate biogeographic zone that is called either the “Oregonian province” or the “northern California ecoregion.” This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, the eastern limb of the North Pacific subtropical gyre that flows from southern British Columbia to Baja California. At its midpoint off central California, the California Current transports subarctic surface (0–500 m deep) waters southward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. The south end of the Oregonian province is at Point Conception (about 335 km south of the map area), although its associated phylogeographic group of marine fauna may extend beyond to the area offshore of Los Angeles in southern California. The ocean off of central California has experienced a warming over the last 50 years that is driving an ecosystem shift away from the productive subarctic regime towards a depopulated subtropical environment. Seafloor habitats in the Offshore of Pigeon Point map area lie within the Shelf (continental shelf) megahabitat. Significant rocky outcrops, which support kelp-forest communities in the nearshore and rocky-reef communities in deeper water, dominate the inner shelf waters. Biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. The large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high-wave-energy environments. Common fish species found in the kelp beds and rocky reefs include lingcod and various species of rockfish and greenling.

California↗

USGS2015

California State Waters map series — Offshore of Scott Creek, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Scott Creek map area is located in central California, on the Pacific Coast about 65 km south of San Francisco and 12 km northwest of Santa Cruz. The onshore part of the map area is sparsely populated; the only cultural center is Davenport, a small community with a population of less than 500. The hilly coastal area is virtually undeveloped, and a large percentage of coastal land is incorporated in open-space trusts. Agricultural land is almost entirely limited to coastal areas between the shoreline and the northwest-trending Santa Cruz Mountains, on Pleistocene alluvial fan deposits and the lowest emergent marine terrace. The Santa Cruz Mountains are part of the northwest-trending Coast Ranges that run roughly parallel to the San Andreas Fault Zone. The map area is cut by the San Gregorio Fault Zone, and it lies a few kilometers southwest of the San Andreas Fault Zone. Regional folding and uplift along the coast has been attributed to a westward bend in the San Andreas Fault Zone and also to right-lateral movement along the San Gregorio Fault Zone. The irregular coastal geomorphology of this area, which consists of low, rocky cliffs and sparse, small pocket beaches backed by low, terraced hills, is partly attributable to this ongoing deformation. The shelf in the map area is underlain by variable amounts (0 to 25 m) of upper Quaternary shelf, nearshore, and fluvial sediments deposited as sea level fluctuated in the late Pleistocene. The northernmost part of the map area is characterized by the presence of uplifted bedrock that has been linked to a local transpressional zone in the San Gregorio Fault Zone. This uplift, coupled with high wave energy, has resulted in little or no sediment cover in this area where exposures of bedrock are present at water depths of as much as 45 m. The thickest deposits of sediment lie offshore of both Davenport and the mouth of Waddell Creek. Coastal sediment transport in the map area is characterized by north-to-south littoral transport of sediment that is derived mainly from streams in the Santa Cruz Mountains and also from local coastal erosion. Shoreline-change studies indicate long-term erosion; within the region between San Francisco and Davenport, the highest long- and short-term coastal-erosion rates occur north of the map area, just north of Point Año Nuevo. During the last approximately 300 years, as much as 18 million cubic yards (14 million cubic meters) of sand-sized sediment has been eroded from the area between Año Nuevo Island and Point Año Nuevo and transported south. Once widened by this pulse of eroded sediment, beaches in the map area are now narrowing as the tail end of this mass of sand progresses farther south. The Offshore of Scott Creek map area lies within the cold-temperate biogeographic zone that is called either the “Oregonian province” or the “northern California ecoregion.” This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, the eastern limb of the North Pacific subtropical gyre that flows from southern British Columbia to Baja California. At its midpoint off central California, the California Current transports subarctic surface (0–500 m deep) waters southward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. The south end of the Oregonian province is at Point Conception (about 320 km south of the map area), although its associated phylogeographic group of marine fauna may extend beyond to the area offshore of Los Angeles in southern California. The ocean off of central California has experienced a warming over the last 50 years that is driving an ecosystem shift away from the productive subarctic regime towards a depopulated subtropical environment. Seafloor habitats in the Offshore of Scott Creek map area, which lie within the Shelf (continental shelf) megahabitat, range from significant rocky outcrops that support kelp-forest communities nearshore to rocky-reef communities in deeper water. Biological productivity resulting from coastal upwelling supports populations of Sooty Shearwater, Western Gull, Common Murre, Cassin’s Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. The large extent of exposed inner shelf bedrock supports large forests of “bull kelp,” which is well adapted for high-wave-energy environments. The kelp beds are the northernmost known habitat for the population of southern sea otters. Common fish species found in the kelp beds and rocky reefs include lingcod and various species of rockfish and greenling.

California↗

USGS2014

Land-margin ecosystem hydrologic data for the coastal Everglades, Florida, water years 1996-2012

Mangrove forests and salt marshes dominate the landscape of the coastal Everglades (Odum and McIvor, 1990). However, the ecological effects from potential sea-level rise and increased water flows from planned freshwater Everglades restoration on these coastal systems are poorly understood. The National Park Service (NPS) proposed the South Florida Global Climate Change Project (SOFL-GCC) in 1990 to evaluate climate change and the effect from rising sea levels on the coastal Everglades, particularly at the marsh/mangrove interface or ecotone (Soukup and others, 1990). A primary objective of SOFL-GCC project was to monitor and synthesize the hydrodynamics of the coastal Everglades from the upstream freshwater marsh to the downstream estuary mangrove. Two related hypotheses were set forward (Nuttle and Cosby, 1993): 1. There exists hydrologic conditions (tide, local rainfall, and upstream water deliveries), which characterize the location of the marsh/mangrove ecotone along the marine and terrestrial hydrologic gradient; and 2. The marsh/mangrove ecotone is sensitive to fluctuations in sea level and freshwater inflow from inland areas. Hydrologic monitoring of the SOFL-GCC network began in 1995 after startup delays from Hurricane Andrew (August 1992) and organizational transfers from the NPS to the National Biological Survey (October 1993) and the merger with the U.S. Geological Survey (USGS) Biological Research Division in 1996 (Smith, 2004). As the SOFL-GCC project progressed, concern by environmental scientists and land managers over how the diversion of water from Everglades National Park would affect the restoration of the greater Everglades ecosystem. Everglades restoration scenarios were based on hydrodynamic models, none of which included the coastal zone (Fennema and others, 1994). Modeling efforts were expanded to include the Everglades coastal zone (Schaffranek and others, 2001) with SOFL-GCC hydrologic data assisting the ecological modeling needs. In 2002, as a response for a more interdisciplinary science approach to understanding the coastal Everglades ecological system, the SOFL-GCC hydrology project was integrated into the “Dynamics of Land-Margin Ecosystems: Historical Change, Hydrology, Vegetation, Sediment, and Climate” study (Smith and others, 2002). Data from the ongoing study has been useful in providing an empirical hydrologic baseline for the greater Everglades ecosystem restoration science and management needs. The hydrology network consisted of 13 hydrologic gaging stations installed in the southwestern coastal region of Everglades National Park along three transects: Shark River (Shark or SH) transect, Lostmans River (Lostmans or LO) transect, and Chatham River (Chatham or CH) transect (fig. 1). There were five paired surface-water/groundwater gaging stations on the Shark transect (SH1, SH2, SH3, SH4, and SH5) and one stage gaging station (BSC) in the Big Sable Creek; four paired surface-water/groundwater gaging stations on the Lostmans transect (LO1, LO2, LO3, and LO4); and three paired surface-water/groundwater gaging stations on the Chatham transect (CH1, CH2, and CH3). Both surface-water and groundwater levels, salinities, and temperatures were monitored at the paired gaging stations. Rainfall was recorded at marsh and open canopy gaging stations. This report details the study introduction, method, and description of data collected, which are accessible through the final instantaneous hydrologic dataset stored in the USGS South Florida Information Access (SOFIA) South Florida Hydrology Database website, http://sofia.usgs.gov/exchange/sfl_hydro_data/location.html#brdlandmargin .

Florida↗

USGS1969

History of the Redwall Limestone of northern Arizona

Throughout most of northern Arizona the Redwall Limestone of Mississippian age is readily divisible into four lithologic units, designated in ascending order as the Whitmore Wash, Thunder Springs, Mooney Falls, and Horseshoe Mesa Members. The first and third members are thick-bedded to massive carbonate rock. The Horseshoe Mesa Member is relatively thin-bedded limestone, and the Thunder Springs Member is distinctive because it consists of chert beds alternating with thin beds of carbonate rock. Trends in thickness of the various members indicate that the sediment that formed the Redwall was deposited on an even, gently sloping shelf that extended westward from the Defiance positive element, a low landmass located near the present eastern border of northern Arizona. The Peach Springs and Payson ridges projected west and southwest, respectively, from the positive element. These ridges, which were partly submerged and partly above sea level during Mississippian time, are indicated by the patterns of isopach lines and, in part, by the distribution of faunas. The ridges divided the Arizona section of the shelf into three segments: the northern-most, which slopes northwest toward the Cordilleran geosyncline, and the other two, which slope toward the south and southwest. Two transgressions and two regressions of the western and southern seaways are believed to be represented by the Redwall. The first transgression, which is recorded by thick beds of clastic sediment of the Whitmore Wash Member, was less extensive than the second, which is recorded by massive beds of the Mooney Falls Member, for on the western margins of the Defiance positive element the Mooney Falls Member overlaps the two lower members. Furthermore, south of Grand Canyon the Whitmore Wash and Thunder Springs Members lap against the Payson ridge without covering it, whereas the Mooney Falls Member, although relatively thin, extends across it. Regression is believed to be represented by thin beds of the Thunder Springs and Horseshoe Mesa Members, which are interpreted to be the result of low base level caused by silting up with clastic material and consequent retreat of the sea. Cycles in sedimentation are well developed in some parts of the Redwall, especially in the upper two members in which differences in grain size represent five major cycles recognized throughout the extent of the Grand Canyon. These textural differences, ranging from aphanitic to coarse grained, are considered to be not measures of the amount of transportation, as with terrigenous sediments, but reflections of the degree of turbulence or the lack of turbulence during deposition. They are interpreted as indicators of cyclic fluctuations in environment, probably related to changes in wave base. Several clearly defined facies within the Redwall indicate environments of deposition. The clastic limestone that forms a major part of the formation, especially in the offshore areas to the west and south, is believed to represent normal marine conditions where circulation was good and turbulence moderate to strong. Uniform finely crystalline dolomite probably developed through early diagenetic processes on the sea floor. On the basis of its distribution pattern the dolomite seems to have formed under shoal conditions, especially where it borders the shore of the Defiance positive element and along Peach Springs ridge. Oölitic limestone at the top of both major transgressive units is interpreted as reflecting the oscillatory conditions of sea level that provided wave and current agitation at times of maximum sea advance in shoal areas bordering the ridges. Aphanitic limestone, representing accumulations of lime mud, seems to be developed best in the uppermost, or Horseshoe Mesa, member, where, as the seas regressed, nearshore waters may have been isolated and certainly were very calm. Original textures and some structures are preserved in most limestones of the Redwall, and they give much evidence concerning oceanographic factors of the time. Generalizations have been developed concerning the character of the bottom, degrees of energy represented, depth, salinity, and other factors for various parts of the formation. Although these factors differed greatly with time and space, the general conclusions reached are that (1) depths were very shallow to moderate, (2) the sea floor was composed nearly entirely of lime mud and lime sand, which contained no terrigeneous material but with great crinoidal accumulations locally, (3) turbulence ranged from considerable to none, and (4) the sea was clear and warm and nowhere contained saline concentrations sufficient to form evaporites. Chert forming thin irregular beds, locally lenticular and nodular, occurs at two prinicpal positions in the stratigraphic section, and in each it alternates with thin beds of carbonate rock. Chert is prominent throughout the Thunder Springs Member and forms thin but definite zones near the top of the Mooney Falls Member. This chert is believed to have formed on the sea floor during early diagenesis, as evidenced by petrography, paleogeography, and faunal relations. Regional differences in the abundance and type of associated fossils, recorded on a series of 4-foot-square sample plots made throughout the Grand Canyon, suggest a probable relation between fossil distribution and genesis of the chert. The fauna of the Redwall is abundant and varied, but preservation in many places is poor, and numerous specimens can be collected only locally. The most common fossils are brachiopods, corals, foraminifers, and crinoids, but blastoids, gastropods, cephalopods, and pelecypods are not rare. Bryozoans are abundant in the chert of the Thunder Springs Member but uncommon elsewhere. Other organisms locally distributed but not common are algae, trilobites, fish, holothurians, and ostracodes. These groups have been studied by specialists and are the subject of Chapters V through XIII. Certain of the faunal groups, notably the corals and foraminifers, show some degree of vertical zoning and so have furnished important data on age and correlation. Among the corals, the zones of Dorlodotia inconstans and Michelinia expansa are especially significant because of their persistence from section to section across broad areas. The foraminiferal zones are broader and less sharply defined, but they represent a series of major changes in species from bottom to top of the formation. Age determination made on the basis of foraminifers and brachiopods indicate that the base of the Redwall is progressively younger as it passes from areas that were offshore eastward or northward toward the Defiance positive element; the top of the Redwall, in contrast, is shown to be progressively younger away from the positive element. Thus basal beds of Kinderhook age are recognized at Grand Wash, Quartermaster, and Meriwitica Canyons to the northwest, but the lowest strata are of Osage age at Bridge Canyon, Grandview, and other sections closer to the landmass. Likewise, units with fossils of middle Meramec age occur in western Grand Canyon, but, except in the one place discussed in the following paragraph, topmost beds farther east in Grand Canyon are of Osage age. South of Grand Canyon the youngest member of the Redwall (Horseshoe Mesa) has been removed by pre-Supai Formation erosion. Rocks still younger than the Horseshoe Mesa once may have covered the entire region, possibly representing a third sequence of transgression and regression. At Bright Angel trail in eastern Grand Canyon, for example, a unique unit at the top of the Redwall section contains fossils of Chester age and apparently represents a remnant of Late Mississippian rocks that survived as an inlier there.

Arizona↗