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USGS2006

Determinants of mallard and gadwall nesting on constructed islands in North Dakota

Constructed islands with adequate nesting cover provide secure nesting sites for ducks because islands restrict access by mammalian predators. These islands are costly to construct and should be placed in areas that ensure the greatest use by nesting ducks. We studied mallard (Anas platyrhynchos) and gadwall (A. strepera) nesting on constructed islands in North Dakota in 1996 (n = 20) and 1997 (n = 22) to evaluate factors—particularly amount of perennial grass cover in the surrounding landscape and density of breeding pairs—that possibly influence numbers of initiated nests. We also examined effects of island characteristics, such as island vegetation, on numbers of nests. Numbers of mallard and gadwall nests on islands were negatively related to amounts of perennial grass cover in the surrounding uplands. Numbers of mallard nests were positively related to percentages of tall dense cover on islands. We found no effects of breeding-pair density on numbers of nests initiated by either species, possibly because breeding pairs were abundant on all study sites. Percent shrub cover on islands was a better predictor of island use than was percent tall dense cover. Island use by these species increased with island age and distance from mainland shore. Amounts of perennial cover in landscapes should be primary considerations in determining where to build islands. Our data suggest that use of islands by nesting mallards and gadwalls is greatest in landscapes with little perennial grass cover (i.e., high amounts of cropland). Other researchers documented a positive relation between nest success in upland covers and amount of perennial grass cover in the landscape. Therefore, islands constructed in landscapes with little perennial cover should provide greater gains in duck recruitment rates than islands constructed in landscapes with greater amounts of perennial grass cover.

Journal of Wildlife Management↗

USGS2015

Mycoplasma agassizii in Morafka's desert tortoise ( Gopherus morafkai ) in Mexico

We conducted health evaluations of 69 wild and 22 captive Morafka's desert tortoises ( Gopherus morafkai ) in Mexico between 2005 and 2008. The wild tortoises were from 11 sites in the states of Sonora and Sinaloa, and the captive tortoises were from the state-managed Centro Ecológico de Sonora Zoo in Hermosillo and a private residence in the town of Alamos. We tested 88 tortoises for mycoplasmal upper respiratory tract disease (URTD) using enzyme-linked immunosorbent assays for specific antibody and by culture and PCR for detection of Mycoplasma agassizii and Mycoplasma testudineum . Fifteen of 22 captive tortoises had one or more positive diagnostic test results for M. agassizii whereas no wild tortoises had positive tests. Tortoises with positive tests also had significantly more moderate and severe clinical signs of mycoplasmosis on beaks and nares compared to tortoises with negative tests. Captive tortoises also exhibited significantly more clinical signs of illness than did wild tortoises, including lethargy and moderate to severe ocular signs. The severity of trauma and diseases of the shell and integument did not differ significantly among tortoises by site; however, clinical signs of moderate to severe trauma and disease were more prevalent in older tortoises. Similar to research findings for other species in the genus Gopherus in the US, we found that URTD is an important disease in captive tortoises. If they escape or are released by intention or accident to the wild, captive tortoises are likely to pose risks to healthy, naïve wild populations.

Sinaloa, Sonora↗

USGS2020

Antibiotic resistant bacteria in wildlife: Perspectives on trends, acquisitions and dissemination, data gaps, and future directions

The proliferation of antibiotic resistant bacteria in the environment has potential negative economic and health consequences. Thus, previous investigations have targeted wild animals to understand the occurrence of antibiotic resistance in diverse environmental sources. In this critical review and synthesis, we summarize important concepts learned through the sampling of wildlife for antibiotic resistant indicator bacteria. These concepts are helpful for understanding dissemination of resistance through environmental pathways and helping to guide future research efforts. Our review is comprised of six sections. The first section briefly introduces antibiotic resistance as it pertains to bacteria harbored in environmental sources such as wild animals. Next, we differentiate wildlife from other animals in the context of how diverse taxa provide different information on antibiotic resistance in the environment. In the third section, we identify representative research and seminal works that illustrate important associations between the occurrence of antibiotic resistant bacteria in wildlife and anthropogenic inputs into the environment. For example, we highlight numerous investigations that support the premise that anthropogenic inputs into the environment drive the occurrence of antibiotic resistance in bacteria harbored by free-ranging wildlife. Additionally, we summarize previous research demonstrating foraging as a mechanism by which wildlife may be exposed to anthropogenic antibiotic resistance contamination in the environment. In the fourth section of our review, we summarize molecular evidence for the acquisition and dissemination of resistance among bacteria harbored by wildlife. In the fifth section, we identify what we believe to be important data gaps and potential future directions that other researchers may find useful towards the development of efficient, informative, and impactful investigations of antibiotic resistant bacteria in wildlife. Finally, we conclude our review by highlighting the need to move from surveys that simply identify antibiotic resistant bacteria in wildlife towards hypothesis-driven investigations that: (1) identify point sources of antibiotic resistance; (2) provide information on risk to human and animal health; (3) identify interventions that may interrupt environmentally mediated pathways of antibiotic resistance acquisition/transmission; and (4) evaluate whether management practices are leading to desirable outcomes.

Journal of Wildlife Diseases↗

USGS2024

Annotated bibliography of scientific research relevant to oil and gas reclamation best management practices in the western United States, published from 1969 through 2020

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey has created a series of annotated bibliographies on topics of management concern for lands in the western United States (U.S.). Oil and gas development on public lands is a long-standing and substantial component of local and regional economies and has expanded in recent decades, particularly on public lands in the western U.S. This development is associated with extensive networks of pipelines, roads, and processing facilities, across which reclamation is Federally mandated following initial well pad development (“interim” reclamation) and once resource extraction is complete (“final” reclamation). Reclamation is critical for recovering ecological services to energy-affected lands, including vegetation productivity, wildlife habitat, water and air quality, and soil stability (for example, resistance to wind and water erosion). However, reclamation of oil and gas affected lands in the western U.S. has proved challenging due to an array of regulatory and environmental factors, such as minimally developed soils, short growing seasons, herbivory, high winds, invasive species, rugged terrain, and in particular, arid climates associated with low total precipitation, high evapotranspiration rates, and highly variable precipitation patterns. We compiled and summarized journal articles, government reports, technical reports, proceedings, and theses and dissertations relevant to oil and gas reclamation. We constrained our search to products published on or before December 31, 2020 but did not limit our search by a starting date; the earliest product resulting from this effort was published in March 1969. Second, we manually scanned the last 15 years (2005-2020) of tables of contents in journals, bibliographies, and proceedings of which we were aware would contain articles highly relevant to this bibliography. We carried out the search for these products through multiple means: (1) performing a structured search of two reference databases, (2) examining articles published since 2005 in highly relevant scientific journals and conference proceedings, and (3) reviewing additional material suggested by authors of products identified in steps 1 and 2. Our search was intentionally broad in order to identify as much relevant work as possible, much of which is professionally applied and tested within the industry of oil and gas reclamation, but which remains unpublished in scientific journals. We refined the initial list of products by removing: (1) duplicates, (2) products not written in English, (3) products that were not relevant to the arid ecosystems of western North America, (4) products that were not released as research, data products, or review articles in journals or as formal scientific reports, and (5) products with data which were not relevant to reclamation of oil and gas-affected lands, or for which the study did not present new data, findings, or syntheses relevant to reclamation of oil and gas-affected lands. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and assigned standardized management topics to each. Management topics are intended to aid online searching within the bibliography and are described in more detail in the Methods Section of this report; they include what type of disturbance the product addresses (well pads, mining, pipelines), what aspect of oil and gas reclamation they pertain to (practices, standards, monitoring), what type of data are present in the product (for instance soil or vegetation recovery data), and an indication if the product were from a source other than a published, peer-reviewed outlet (such as dissertations or unpublished professional reports – these are identified as grey literature). The review process for this annotated bibliography included an initial internal colleague review of each summary, requesting input on each summary from an author of the original product, and a formal peer-review. Our initial searches resulted in 3,197 total products, of which 290 met our criteria for inclusion. “Reclamation Practices” is by far the management topic most addressed, followed by “Reclamation Monitoring,” for example, products assessing what and how monitoring methods are used to track and measure reclamation outcome. This document may be accessed at https://doi.org/10.3133/ofr20231068 or from the U.S. Geological Survey Publication Warehouse ( https://pubs.usgs.gov/ ). The 1-page product summaries herein will also be used to create a bibliography at https://apps.usgs.gov/science-for-resource-managers that includes links to each original product, where available, and in which subject matter will be searchable by topic, location, and year. The studies compiled and summarized here may inform planning and management actions that seek to reclaim landscapes across the western U.S. which have been affected by oil and gas development.

Open-File Report↗

USGS2015

Evaluation of capture techniques on lesser prairie-chicken trap injury and survival

Ethical treatment of research animals is required under the Animal Welfare Act. This includes trapping methodologies that reduce unnecessary pain and duress. Traps used in research should optimize animal welfare conditions within the context of the proposed research study. Several trapping techniques are used in the study of lesser prairie-chickens, despite lack of knowledge of trap injury caused by the various methods. From 2006 to 2012, we captured 217, 40, and 144 lesser prairie-chickens Tympanuchus pallidicinctus using walk-in funnel traps, rocket nets, and drop nets, respectively, in New Mexico and Texas, to assess the effects of capture technique on injury and survival of the species. We monitored radiotagged, injured lesser prairie-chickens 7–65 d postcapture to assess survival rates of injured individuals. Injuries occurred disproportionately among trap type, injury type, and sex. The predominant injuries were superficial cuts to the extremities of males captured in walk-in funnel traps. However, we observed no mortalities due to trapping, postcapture survival rates of injured birds did not vary across trap types, and the daily survival probability of an injured and uninjured bird was ≥99%. Frequency and intensity of injuries in walk-in funnel traps are due to the passive nature of these traps (researcher cannot select specific individuals for capture) and incidental capture of individuals not needed for research. Comparatively, rocket nets and drop nets allow observers to target birds for capture and require immediate removal of captured individuals from the trap. Based on our results, trap injuries would be reduced if researchers monitor and immediately remove birds from walk-in funnels before they injure themselves; move traps to target specific birds and reduce recaptures; limit the number of consecutive trapping days on a lek; and use proper netting techniques that incorporate quick, efficient, trained handling procedures.

Journal of Fish and Wildlife Management↗

USGS2021

Outside the box: Working with wildlife in biocontainment

Research with captive wildlife in Animal Biosafety Level 2 (ABSL2) and 3 (ABSL3) facilities is becoming increasingly necessary as emerging and re-emerging diseases involving wildlife have increasing impacts on human, animal, and environmental health. Utilizing wildlife species in a research facility often requires outside the box thinking with specialized knowledge, practices, facilities, and equipment. The USGS National Wildlife Health Center (NWHC) houses an ABSL3 facility dedicated to understanding wildlife diseases and developing tools to mitigate their impacts on animal and human health. This review presents considerations for utilizing captive wildlife for infectious disease studies, including, husbandry, animal welfare, veterinary care, and biosafety. Examples are drawn from primary literature review and collective 40-year experience of the NWHC. Working with wildlife in ABSL2 and ABSL3 facilities differs from laboratory animals in that typical laboratory housing systems, husbandry practices, and biosafety practices are not designed for work with wildlife. This requires thoughtful adaptation of standard equipment and practices, invention of customized solutions and development of appropriate enrichment plans using the natural history of the species and the microbiological characteristics of introduced and native pathogens. Ultimately, this task requires critical risk assessment, understanding of the physical and psychological needs of diverse species, creativity, innovation, and flexibility. Finally, continual reassessment and improvement are imperative in this constantly changing specialty area of infectious disease and environmental hazard research.

ILAR Journal↗

USGS1963

Disease and infection in the Tetraonidae

Disease is one of many factors advanced to explain the fluctuations of grouse populations, but no profound study of natural disease losses in Tetraonidae exists. The literature contains frequent references to THE grouse disease, although many potential pathogens are listed in numerous surveys and limited investigations, and the relevant data indicate that no single etiologic agent is universally responsible for disease in grouse. Few experimental infections or related studies on parasite biology have been attempted. Well-trained personnel and specialized facilities are required for research and analysis (1) to develop new methods of interpretation to be used with existing census techniques, (2) to conduct intensive studies of ecological factors of host and habitat, and (3) to establish base lines for recognition of deviations from the norm. Disease in wildlife can be controlled only through management procedures based on information concerning the biology of pathogens, hosts, and environments. It cannot be studied as a separate entity if its impact on survival or population fluctuations of grouse is to be correctly assessed.

Journal of Wildlife Management↗

USGS1997

Body-mass, survival, and pairing consequences of winter-diet restriction in wood ducks

We conducted feeding experiments with captive, wild-strain wood ducks ( Aix sponsa ) during winters 1990-91 and 1991-92 to test effects of increasing levels of food restriction on body mass dynamics, mortality, and pair formation. Male and female wood ducks fed restricted diets (i.e., 5, 10, 15, or 20% less food [g] than consumed on the previous day by a control group fed ad libitum) weighed less ( P ≤ 0.037) than birds fed ad libitum; those on 15 and 20% restricted diets weighed least. Increased mortality and decreased pair formation occurred only within the 20% restricted group ( P ≤ 0.049). We concluded that food restriction ranging between 15 and 20% of ad libitum intake may signify a threshold above which survival and reproduction of captive wood ducks may be impaired. Because energy costs of free living are greater than in captivity, a lower threshold may exist for wild wood ducks. Research is needed to validate the threshold theory for free-ranging wood ducks and other waterfowl, and to evaluate its potential application for conservation of winter foraging habitat. Conservation of bottomland hardwood ecosystems, which provide important foraging habitat for migrating and wintering wood ducks, should be encouraged to prevent potential negative effects on wood duck life-cycle events.

Mississippi↗

USGS2017

Prevalence and distribution of Wellfleet Bay virus exposure in the Common Eider ( Somateria mollissima )

Between 1998 and 2014, recurrent mortality events were reported in the Dresser's subspecies of the Common Eider ( Somateria mollissima dresseri ) on Cape Cod, Massachusetts, USA near Wellfleet Harbor. The early die-offs were attributed to parasitism and emaciation, but beginning in 2006 a suite of distinct lesions was observed concomitant with the isolation of a previously unknown RNA virus. This novel pathogen was identified as an orthomyxovirus in the genus Quaranjavirus and was named Wellfleet Bay virus (WFBV). To assess evidence of exposure to this virus in Common Eiders, we conducted a longitudinal study of the prevalence of WFBV antibodies at multiple locations from 2004–14; we collected 2,258 serum samples from six locations and analyzed each using a microneutralization assay. Results corroborate the emergence of WFBV in 2006 based on the first detection of antibodies in that year. Significantly higher prevalence was detected in Common Eiders sampled in Massachusetts compared to those in Maine, Nova Scotia, and Québec. For birds breeding and wintering in Massachusetss, viral exposure varied by age, sex, and season of sampling, and prevalence by season and sex were highly interrelated with greater numbers of antibody-positive males in the autumn and females in the spring. No evidence of viral exposure was detected in the Northern subspecies ( Somateria mollissima borealis ). Among the locations sampled, Massachusetts appears to be the epicenter of Common Eider exposure to WFBV. Further research is warranted to understand the factors controlling the epidemiology of WFBV in Massachussetts, including those that may be limiting geographic expansion of this virus.

Journal of Wildlife Diseases↗

USGS1968

Mortality among bobwhites confined to a heptachlor contaminated environment

The lethal effects of heptachlor on bobwhites ( Colinus virginianus ) were studied at the Patuxent Wildlife Research Center during 1962 and 1963. A pair of adult birds was placed in each of 32 wire-covered field pens (20 x 50 x 61/2 ft) in May, 1962, and in 36 additional pens in May, 1963. Heptachlor (technical grade on clay granules) was spread in the pens at rates of1/8, 1/4, 1 1/4 and 2 lb/acre. In 1963 the treated pens were thoroughly soaked with a hose before birds were introduced to avoid the possibility of birds pecking granules. Heptachlor at 1 1/4 and 2 lb/acre caused severe mortality among birds introduced successively during the first 15 days after application. Mortality declined rapidly among birds placed in these same pens thereafter and was undetectable after 45 days. Mortality at 1/4 lb/acre was significant only during the first 15 days of the 1962 test. There was no detectable difference in mortality of the sexes. Water applied to the pens followed by fairly heavy rain did not significantly affect mortality.

Alabama↗

USGS2019

Non-anthropogenic diet-based oiling of predatory birds

Oiling of wildlife can have important consequences to individual animals and populations (Kingston 2002). Individual birds that are heavily oiled lose their ability to fly and may become ill or die from hypothermia, starvation, exhaustion, or drowning (Clark 1984, Rocke 1999). For example, large-scale oiling from the Exxon Valdez spill caused local declines in populations of many avian taxa (Irons et al. 2000). Although most oiling reports involve marine wildlife exposed to oil leaked from vessels or oil rigs, oiling also can occur in terrestrial environments, for example, via birds drinking water in puddles on asphalt roadways (Clark and Gorney 1987) or landing in oil field wastewater disposal facilities (Trail 2006, Ramírez 2010).

Journal of Raptor Research↗

USGS2007

Contaminant exposure and biomarker response in embryos of Black-crowned Night-herons (Nycticorax nycticorax) nesting near Lake Calumet, Illinois

We examined a suite of environmental contaminants and exposure endpoints in black-crowned night-heron ( Nycticorax nycticorax , BCNH) embryos collected in 2002 from colonies in Illinois, Minnesota, and Virginia. Embryos from the Lake Calumet, IL, colony had greater exposure to polychlorinated biphenyls (PCBs), 4,4'-dichlorodiphenyldichloroethylene (DDE), dieldrin, transnonachlor, oxychlordane, cobalt, copper, and selenium than did those from northwest MN and coastal VA. Embryos from IL and VA contained greater concentrations of mercury and zinc than those from MN, whereas the latter had greater accumulation of lead. Greater exposure of IL embryos to PCBs was reflected in greater ethoxyresorufin-O-deethylase and benzyloxyresorufin-O-dealkylase induction. However, measures of oxidative stress and genotoxicity were similar to those in embryos from the other colonies examined, and no overt toxic effects of contaminant exposure such as embryo mortality or malformations were observed. Although efforts to clean up the south Chicago environment are ongoing, Lake Calumet BCNH, and undoubtedly other piscivorous wildlife foraging in the region, continue to be exposed to a variety of environmental contaminants. Life-history characteristics of this species make it ideal as an environmental sentinel for the success of the cleanup of the south Chicago environment.

Illinois↗

USGS2022

Annotated bibliography of scientific research on pygmy rabbits published from 1990 to 2020

Open-File Report↗

USGS2000

Hazards to wildlife from soil-borne cadmium reconsidered

Cadmium is a toxic element that should be included in environmental risk assessments of contaminated soils. This paper argues, however, that hazards to wildlife from cadmium have often been overstated. The literature contains only meager evidence that wild animals have been seriously harmed by cadmium, even at severely contaminated sites. Although some researchers have reported that wildlife have accumulated concentrations of cadmium in their kidneys that were above suggested injury thresholds, the thresholds may be disputed, since they were well below the World Health Organization criterion of 200 mg/kg (wet weight) of cadmium in the renal cortex for protecting human health. Recent risk assessments have concluded that soil cadmium concentrations less than 1 mg/kg are toxic to soil organisms and wildlife, which implies that background concentrations of cadmium naturally found in soils are hazardous. An examination of the databases used to support these assessments suggested that the toxicity of cadmium has been exaggerated.

Journal of Environmental Quality↗

USGS1993

Evidence of spring spawning lake trout in Lake Superior

In 1992, the U. S. Fish and Wildlife Service began research on the life history, population dynamics, and stock delineation of siscowet lake trout Salvelinus namaycush siscowet in Lake Superior. Siscowet were captured with gill nets in 80-150 m of water on 23-26 April 1992 north of the Apostle Islands in western Lake Superior. Of 91 captured siscowets, one male had fully developed testes in nearly ripe condition and one female had eggs running from the vent. This observation represents the earliest dates that lake trout of any morphotype have been found in spawning or near-spawning condition.

Journal of Great Lakes Research↗

USGS2016

Potential effects of drought on carrying capacity for wintering waterfowl in the Central Valley of California

We used the bioenergetics model TRUEMET to evaluate potential effects of California's recent drought on food supplies for waterfowl wintering in the Central Valley under a range of habitat and waterfowl population scenarios. In nondrought years in the current Central Valley landscape, food supplies are projected to be adequate for waterfowl from fall through early spring (except late March) even if waterfowl populations reach North American Waterfowl Management Plan goals. However, in all drought scenarios that we evaluated, food supplies were projected to be exhausted for ducks by mid- to late winter and by late winter or early spring for geese. For ducks, these results were strongly related to projected declines in winter-flooded rice fields that provide 45% of all the food energy available to ducks in the Central Valley in nondrought water years. Delayed flooding of some managed wetlands may help alleviate food shortages by providing wetland food resources better timed with waterfowl migration and abundance patterns in the Central Valley, as well as reducing the amount of water needed to manage these habitats. However, future research is needed to evaluate the impacts of delayed flooding on waterfowl hunting, and whether California's existing water delivery system would make delayed flooding feasible. Securing adequate water supplies for waterfowl and other wetland-dependent birds is among the greatest challenges facing resource managers in coming years, especially in the increasingly arid western United States.

Journal of Fish and Wildlife Management↗

USGS2003

True metabolizable energy for wood ducks from acorns compared to other waterfowl foods

Acorns of bottomland red oaks (Quercus spp.) are an important food of North American wood ducks (Aix sponsa). Barras et al. (1996) demonstrated that female wood ducks selected willow oak (Q. phellos) acorns over other species. We measured true metabolizable energy (TME) derived by captive, wild-strain, adult female wood ducks from acorns of willow oak, water oak (Q. nigra), cherrybark oak (Q. pagoda), and pin oak (Q. palustris) to determine whether female wood ducks ' preference for willow oak acorns was related to TME. Estimates of TME within acorn species were relatively precise, yet we did not detect variation in TME among acorn species (P=0.31); hence, we estimated TME across species (2.76±0.033 [SE] kcal/g dry mass; n=34). We concluded that TME apparently did not explain female wood ducks ' preference for willow oak acorns and hypothesized that morphological characteristics of willow oak acorns may be proximate cues related to selection by wood ducks . We also summarized known TME estimates for acorns fed to wood ducks and mallards (Anas platyrhynchos), and natural and agricultural foods fed to mallards, northern pintails (A. acuta), blue-winged teal (A. discors), and Canada geese (Branta canadensis). We found that acorns and moist-soil plant seeds and tubers provided, on average, about 76% of the TME in agricultural seeds. Thus, bottomland-hardwood and moist-soil habitats have potential to provide significant amounts of dietary energy , as well as greater diversity of foods and nutrients than croplands. Researchers should continue to determine TME of common foods (plant and animal) of waterfowl , and use TME in estimating waterfowl habitat carrying capacity (e.g., Reinecke et al. 1989). Additionally, large-scale, reliable estimates of plant and animal food availability in bottomland-hardwood and moist-soil habitats are needed to evaluate carrying capacity of landscapes important to waterfowl , such as the Mississippi Alluvial Valley (MAV).

Journal of Wildlife Management↗

USGS2010

Landscape correlates along mourning dove call-count routes in Mississippi

Mourning dove (Zenaida macroura) call-count surveys in Mississippi, USA, suggest declining populations. We used available mourning dove call-count data to evaluate long-term mourning dove habitat relationships. Dove routes were located in the Mississippi Alluvial Valley, Deep Loess Province, Mid Coastal Plain, and Hilly Coastal Plain physiographic provinces of Mississippi. We also included routes in the Blackbelt Prairie region of Mississippi and Alabama, USA. We characterized landscape structure and composition within 1.64-km buffers around 10 selected mourning dove call-count routes during 3 time periods. Habitat classes included agriculture, forest, urban, regeneration stands, wetland, and woodlot. We used Akaike's Information Criterion to select the best candidate model. We selected a model containing percent agriculture and edge density that contained approximately 40% of the total variability in the data set. Percent agriculture was positively correlated with relative dove abundance. Interestingly, we found a negative relationship between edge density and dove abundance. Researchers should conduct future research on dove nesting patterns in Mississippi and threshold levels of edge necessary to maximize dove density. During the last 20 years, Mississippi lost more than 800,000 ha of cropland while forest cover represented largely by pine (Pinus taeda) plantations increased by more than 364,000 ha. Our results suggest observed localized declines in mourning dove abundance in Mississippi may be related to the documented conversion of agricultural lands to pine plantations.

Journal of Wildlife Management↗