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At least 199 records · Page 11Linked to original sources
USGS2008

The Global Flows of Metals and Minerals

This paper provides a preliminary review of the trends in worldwide metals and industrial minerals production and consumption based on newly developed global metals and minerals Material Flow Accounts (MFA). The MFA developed encompass data on extraction and consumption for 25 metal and mineral commodities, on a country-by-country and year-by-year basis, for the period 1970 to 2004. The data-base, jointly developed by the authors, resides with the U.S. Geological Survey (USGS) as individual commodity Excel workbooks and within a Filemaker data management system for use in analysis. Numerous national MFA have been developed to provide information on the industrial metabolism of individual countries. These MFA include material flows associated with the four commodity categories of goods that are inputs to a country's economy, agriculture, forestry, metals and minerals, and nonrenewable organic material. In some cases, the material flows associated with the creation and maintenance of the built infrastructure (such as houses, buildings, roads, airports, dams, and so forth) were also examined. The creation of global metals and industrial minerals flows is viewed as a first step in the creation of comprehensive global MFA documenting the historical and current flows of all of the four categories of physical goods that support world economies. Metals and minerals represent a major category of nonrenewable resources that humans extract from and return to the natural ecosystem. As human populations and economies have increased, metals and industrial minerals use has increased concomitantly. This dramatic growth in metals and minerals use has serious implications for both the availability of future resources and the health of the environment, which is affected by the outputs associated with their use. This paper provides an overview of a number of the trends observed by examining the database and suggests areas for future study.

Open-File Report↗
USGS2009

Lead in the environment

Anthropogenic uses of lead have probably altered its availability and environmental distribution more than any other toxic element. Consequently, lead concentrations in many living organisms may be approaching thresholds of toxicity for the adverse effects of lead. Such thresholds are difficult to define, as they vary with the chemical and physical form of lead, exposure regime, other elements present and also vary both within and between species. The technological capability to accurately quantify low lead concentrations has increased over the last decade, and physiological and behavioral effects have been measured in wildlife with tissue lead concentrations below those previously considered safe for humans.s.236 Consequently. lead criteria for the protection of wildlife and human health are frequently under review, and 'thresholds' of lead toxicity are being reconsidered. Proposed lead criteria for the protection of natural resources have been reviewed by Eisler. Uptake of lead by plants is limited by its generally low availability in soils and sediments, and toxicity may be limited by storage mechanisms and its apparently limited translocation within most plants. Lead does not generally accumulate within the foliar parts of plants, which limits its transfer to higher trophic levels. Although lead may concentrate in plant and animal tissues, no evidence of biomagnification exists. Acid deposition onto surface waters and soils with low buffering capacity may influence the availability of lead for uptake by plants and animals, and this may merit investigation at susceptible sites. The biological significance of chronic low-level lead exposure to wildlife is sometimes difficult to quantify. Animals living in urban environments or near point sources of lead emission are inevitably subject to greater exposure to lead and enhanced risk of lead poisoning. Increasingly strict controls on lead emissions in many countries have reduced exposure to lead from some sources. and the .reduction of lead in gasoline has resulted in lower tissue lead concentrations in humans and wildlife from many, particularly urban, locations. However, it has been suggested that increasing use of organic lead compounds as catalysts for the production of plastics and as wood preservatives and biocides could adversely affect wildlife. The most significant source of direct wildlife mortality from lead is spent gunshot and fishing sinkers. Elevated mortality from shot ingestion in avian species resulted in the introduction of nontoxic (steel) shot zones along certain flyways in the United States in the mid-1970s and a total ban on the use of lead for waterfowl and coot hunting nationwide by 1992. Several other countries are now following suit and have either banned or are in the process of restricting the use of lead shot for waterfowl hunting. In the United States it has been estimated that since the 1986 hunting season. when the use of nontoxic shot became widespread. over 6 million ducks have not been lost to lead poisoning. Raptors, especially eagles, have also apparently benefited. although lead poisoning from ingestion of bullet fragments remains a problem for the critically threatened California condor. Quantifying reductions in lead mortality rates would be difficult since eagle populations throughout North America are rapidly recovering from other anthropogenic perturbations, especially organochlorine pesticides.

Book chapter↗
USGS2014

Baseline groundwater quality from 34 wells in Wayne County, Pennsylvania, 2011 and 2013

Wayne County, Pennsylvania, is underlain by the Marcellus Shale, which currently (2014) is being developed elsewhere in Pennsylvania for natural gas. All residents of largely rural Wayne County rely on groundwater for water supply, primarily from bedrock aquifers (shales and sandstones). This study, conducted by the U.S. Geological Survey in cooperation with the Pennsylvania Department of Conservation and Natural Resources, Bureau of Topographic and Geologic Survey (Pennsylvania Geological Survey), provides a groundwater-quality baseline for Wayne County prior to development of the natural gas resource in the Marcellus Shale. Selected wells completed in the Devonian-age Catskill Formation, undifferentiated; the Poplar Gap and Packerton Members of the Catskill Formation, undivided; and the Long Run and Walcksville Members of the Catskill Formation, undivided, were sampled. Water samples were collected once from 34 domestic wells during August 2011 and August and September 2013 and analyzed to characterize their physical and chemical quality. Samples were analyzed for 45 constituents and properties, including nutrients, major ions, metals and trace elements, radioactivity, and dissolved gases, including methane and radon-222. The quality of the sampled groundwater was generally within U.S. Environmental Protection Agency (USEPA) drinking-water standards, although in some samples, the concentrations of a few constituents exceeded USEPA drinking-water standards and health advisories. The pH of water samples ranged from 5.5 to 9.3 with a median of 7.0. The pH was outside the USEPA secondary maximum contaminant level (SMCL) range of 6.5 to 8.5 in water samples from 14 of the 34 wells (41 percent). Eleven samples had a pH less than 6.5, and three samples had a pH greater than 8.5. Dissolved oxygen concentrations ranged from 0.2 to 11.5 milligrams per liter (mg/L) with a median of 4.7 mg/L. The dissolved oxygen concentration was less than 1 mg/L in water samples from 6 wells; 5 of these 6 water samples had a pH greater than 7.7. Concentrations of dissolved methane ranged from less than 0.00006 to 3.3 mg/L. Methane was detectable in 22 of the 34 wells sampled (65 percent). Methane concentrations were greatest in the 5 samples with pH of 7.8 or higher, ranging from 0.040 to 3.3 mg/L. These samples also had among the lowest concentrations of dissolved oxygen. Three water samples, which had sufficient dissolved methane concentrations (greater than 0.9 mg/L), were analyzed for isotopes of carbon and hydrogen in the methane. The isotopic ratio values fell within (two samples) or close to (one sample) the range for a thermogenic natural gas source. The total dissolved solids concentration ranged from 33 to 346 mg/L; the median concentration was 126 mg/L. Sodium concentrations ranged from 1.07 to 116 mg/L; the median concentration was 9.42 mg/L. The sodium concentration exceeded the USEPA health advisory for sodium of 20 mg/L in water samples from 7 of the 34 wells (21 percent). Concentrations of dissolved arsenic ranged from less than 0.06 to 21.8 micrograms per liter (µg/L); the median concentration was 0.59 µg/L. Water samples from 2 of the 34 wells (6 percent) exceeded the USEPA maximum contaminant level (MCL) of 10 µg/L for arsenic. Concentrations of dissolved manganese ranged from less than 0.15 to 61.5 µg/L; the median concentration was 0.42 µg/L. A water sample from 1 of the 34 wells (3 percent) exceeded the USEPA SMCL of 50 µg/L for manganese; the concentration was less than the USEPA lifetime health advisory of 300 µg/L for manganese. Activities of radon-222 in water from the 34 sampled wells ranged from 110 to 7,180 picocuries per liter (pCi/L); the median activity was 2,105 pCi/L. Water samples from 33 of the 34 wells (97 percent) exceeded the proposed USEPA MCL of 300 pCi/L, and 4 water samples (12 percent) exceeded the USEPA proposed alternative MCL of 4,000 pCi/L for radon-222. Differences in groundwater chemistry were related to pH. Water with a pH greater than 7.6 generally had low dissolved oxygen concentrations, indicating reducing conditions in the aquifer. These high pH waters also had relatively elevated concentrations of methane, arsenic, boron, bromide, fluoride, lithium, and sodium but low concentrations of copper, nickel, and zinc. Water samples with a pH greater than 7.8 had methane concentrations equal to or greater than 0.04 mg/L.

Pennsylvania↗
USGS2022

Framework for the development of the Columbia River mainstem fish tissue and water quality monitoring program - Bonneville Dam to Canadian border

The Columbia River provides important cultural, economic, and ecological services to a significant portion of the United States. Anadromous and resident fish species and other wildlife are integrated into the cultural traditions of all Tribes in the Columbia River Basin. Salmon, lamprey, sturgeon, and resident fish are an integral part of Tribal religion, culture, and physical sustenance. Despite concerns about the effect of contaminants on the aquatic ecosystem, the disproportionate effects of contaminants on members of Tribal sovereignties, and the known effects of contaminants on species protected under the Endangered Species Act, efforts to address toxic chemical pollution in the Columbia River have been limited. The lack of a dedicated contaminant monitoring program impedes evaluation and decision making regarding the health of the Columbia River ecosystem, as well as human health for Tribal members and others that consume fish and other biota from the Columbia River. The purpose of this framework is to provide guidance for the development of a long-term program (Program) that provides the basis for assessing the status and trends of contaminants in fish, sediment, water, and invertebrates along the 962-kilometer length of the Columbia River from the Bonneville Dam upriver to the Canadian Border (Figure ES1). This framework will focus on four persistent and bioaccumulative classes of toxic contaminants: • Mercury • Polychlorinated biphenyls (PCBs) • Dichlorodiphenyltrichloroethane (DDT) • Polybrominated diphenyl ethers (PBDEs) Media of interest in this framework include anadromous and resident fish, sediment, invertebrates, biofilm, and surface water. Future consideration of additional contaminants could include pesticides, per or poly-fluoroalkyl substances, 6PPD-quinone, and contaminants of emerging concern (CECs), which comprises a diverse group of anthropogenic chemicals that include thousands of pharmaceuticals, hormones, illicit drugs, new pesticides, personal care products, flame retardants, artificial sweeteners, perfluorinated compounds, disinfection byproducts, ultraviolet filters, and other industrial chemicals. This framework includes the vision, goals, and objectives for the Program. The vision for the Program is that it will provide the basis for assessing the status and trends of contaminants in the Columbia River to guide ecosystem recovery resulting in clean, healthy fish for current and future generations . The goals of the Program are to 1) conduct long-term monitoring to assess the spatial and temporal status and trends of toxics in fish, water, sediment, and other potential media in the Columbia River mainstem, from Bonneville Dam to the Canadian Border in perpetuity, 2) stimulate conversion of science into action by providing information to facilitate future decision making that improves ecosystem function and reduces contaminants in all levels of the food chain, and 3) adaptively manage the Program to address new key questions, incorporate new and emerging science advancements, and respond to community information needs. To facilitate achieving these goals, this framework provides details on technical planning; community outreach and engagement; and adaptive management to promote understanding and improve future decision making over the long-term, including updating the Program with new and emerging science and community needs. Additionally, data associated with the Program will be made available to the public through the EPA Water Quality Exchange (https://www.epa.gov/waterdata/water-quality-data). Documents and other materials associated with the Program can be accessed via a website hosted by Yakama Nation Fisheries (https://yakamafish-nsn.gov/restore/projects/columbia-river-mainstem- water-quality-monitoring-program). Although the Program is limited to the Columbia River upstream of the Bonneville Dam, collaboration with other entities that monitor contaminants in the Columbia River Basin, including the Columbia River estuary below Bonneville Dam, are also an important component of outreach. Our goal is to encourage efforts to ensure data comparability across programs and recognize that the growth and adaptive management of the Program considers basin-wide monitoring developments.

Oregon, Washington↗
USGS2008

Multi-Disciplinary Approach to Trace Contamination of Streams and Beaches

Concentrations of fecal-indicator bacteria in urban streams and ocean beaches in and around Santa Barbara occasionally can exceed public-health standards for recreation. The U.S. Geological Survey (USGS), working with the City of Santa Barbara, has used multi-disciplinary science to trace the sources of the bacteria. This research is helping local agencies take steps to improve recreational water quality. The USGS used an approach that combined traditional hydrologic and microbiological data, with state-of-the-art genetic, molecular, and chemical tracer analysis. This research integrated physical data on streamflow, ground water, and near-shore oceanography, and made extensive use of modern geophysical and isotopic techniques. Using those techniques, the USGS was able to evaluate the movement of water and the exchange of ground water with near-shore ocean water. The USGS has found that most fecal bacteria in the urban streams came from storm-drain discharges, with the highest concentrations occurring during storm flow. During low streamflow, the concentrations varied as much as three-fold, owing to variable contribution of non-point sources such as outdoor water use and urban runoff to streamflow. Fecal indicator bacteria along ocean beaches were from both stream discharge to the ocean and from non-point sources such as bird fecal material that accumulates in kelp and sand at the high-tide line. Low levels of human-specific Bacteroides, suggesting fecal material from a human source, were consistently detected on area beaches. One potential source, a local sewer line buried beneath the beach, was found not to be responsible for the fecal bacteria.

Fact Sheet↗
USGS2017

Brackish groundwater and its potential to augment freshwater supplies

Secure, reliable, and sustainable water resources are fundamental to the Nation’s food production, energy independence, and ecological and human health and well-being. Indications are that at any given time, water resources are under stress in selected parts of the country. The large-scale development of groundwater resources has caused declines in the amount of groundwater in storage and declines in discharges to surface water bodies (Reilly and others, 2008). Water supply in some regions, particularly in arid and semiarid regions, is not adequate to meet demand, and severe drought intensifies the stresses affecting water resources (National Drought Mitigation Center, the U.S. Department of Agriculture, and the National Oceanic and Atmospheric Association, 2015). If these drought conditions continue, water shortages could adversely affect the human condition and threaten environmental flows necessary to maintain ecosystem health. In support of the national census of water resources, the U.S. Geological Survey (USGS) completed the national brackish groundwater assessment to provide updated information about brackish groundwater as a potential resource to augment or replace freshwater supplies (Stanton and others, 2017). Study objectives were to consolidate available data into a comprehensive database of brackish groundwater resources in the United States and to produce a summary report highlighting the distribution, physical and chemical characteristics, and use of brackish groundwater resources. This assessment was authorized by section 9507 of the Omnibus Public Land Management Act of 2009 (42 U.S.C. 10367), passed by Congress in March 2009. Before this assessment, the last national brackish groundwater compilation was completed in the mid-1960s (Feth, 1965). Since that time, substantially more hydrologic and geochemical data have been collected and now can be used to improve the understanding of the Nation’s brackish groundwater resources.

Fact Sheet↗
USGS2011

USGS St. Petersburg Coastal and Marine Science Center

Extreme storms, sea-level rise, and the health of marine communities are some of the major societal and environmental issues impacting our Nation's marine and coastal realm. The U.S. Geological Survey (USGS) in St. Petersburg, Fla., investigates processes related to these ecosystems and the societal implications of natural hazards and resource sustainability. As one of three centers nationwide conducting research within the USGS Coastal and Marine Geology Program, the center is integral towards developing an understanding of physical processes that will contribute to rational decisions regarding the use and stewardship of national coastal and marine environments.

Florida↗
USGS2004

Suwannee river basin and estuary integrated science workshop: September 22-24, 2004 Cedar Key, Florida

In response to the growing number of environmental concerns in the mostly pristine Suwannee River Basin and the Suwannee River Estuary system, the States of Florida and Georgia, the Federal government, and other local organizations have identified the Suwannee River as an ecosystem in need of protection because of its unique biota and important water resources. Organizations with vested interests in the region formed a coalition, the Suwannee Basin Interagency Alliance (SBIA), whose goals are to promote coordination in the identification, management, and scientific knowledge of the natural resources in the basin and estuary. To date, an integrated assessment of the physical, biological, and water resources has not been completed. A holistic, multi-disciplinary approach is being pursued to address the research needs in the basin and estuary and to provide supportive data for meeting management objectives of the entire ecosystem. The USGS is well situated to focus on the larger concerns of the basin and estuary by addressing specific research questions linking water supply and quality to ecosystem function and health across county and state boundaries. A strategic plan is being prepared in cooperation with Federal, State, and local agencies to identify and implement studies to address the most compelling research issues and management questions, and to conduct fundamental environmental monitoring studies. The USGS, Suwannee River Water Management District and the Florida Marine Research Institute are co-sponsoring this scientific workshop on the Suwannee River Basin and Estuary to: Discuss current and past research findings, Identify information gaps and research priorities, and Develop an action plan for coordinated and relevant research activities in the future. This workshop builds on the highly successful basin-wide conference sponsored by the Suwannee Basin Interagency Alliance that was held three years ago in Live Oak, Florida. This years workshop will focus on identifying information needs and priorities and developing partnerships. The USGS is seeking to define the role of the USGS Florida Integrated Science Center (FISC) in conducting integrated research in the Suwannee River Basin, and to establish a cooperative program with other agencies. Participants interested in river, floodplain, springs, estuary, or basin-wide issues are encouraged to attend. Topics for this years workshop include: Water quality and geochemistry: nutrient enrichment, reduction of nutrient loading to ground water, contaminants, and land use, Hydrogeology: interactions among ground water, surface water and ecosystem, modeling, and baseline mapping, Ecosystem dynamics: structure, process, species, and habitats (estuarine, riverine, floodplain, and wetland), and Information management: data sharing, database development, geographic information system (GIS), and basin-wide models.

Open-File Report↗
USGS2012

Evidence of accelerated beak growth associated with avian keratin disorder in black-capped chickadees (Poecile atricapillus)

We recently documented an epizootic of beak deformities in more than 2,000 Black-capped Chickadees ( Poecile atricapillus ) and other wild bird species in North America. This emerging avian disease, which has been termed avian keratin disorder , results in gross overgrowth of the rhamphotheca, the outer, keratinized layer of the beak. To test the hypothesis that the beak deformities characteristic of this disorder are associated with accelerated keratin production, we measured rates of beak growth and wear in affected Black-capped Chickadees ( n =16) and a control sample of unaffected chickadees ( n =14) collected from south-central (61°09′–61°38′N, 149°11′–149°48′W) and interior Alaska (64°51′–64°53′N, 147°49′–147°59′W). Rates of absolute growth were 50–100% higher in affected birds than they were in control birds and exceeded records from other passerine species. These results suggest that abnormally rapid epidermal growth is the primary physical mechanism by which beak deformities develop and are maintained in affected chickadees. Although beak overgrowth typically worsened over time, differential patterns of wear influenced the severity and morphology of deformities. In some cases, the effects of accelerated keratin growth were partially mitigated by frequent breakage of rhamphothecal tips. However, mortalities occurred in 9 of 16 birds (56%) with beak deformities during the study, suggesting that avian keratin disorder results in severe health consequences for affected birds. Additional study of factors that control beak keratin production is needed to understand the pathogenesis of this debilitating disease in wild birds.

Alaska↗
USGS2016

Chesapeake Bay recovery and factors affecting trends: Long-termmonitoring, indicators, and insights

Monitoring the outcome of restoration efforts is the only way to identify the status of a recovery and the most effective management strategies. In this paper, we discuss Chesapeake Bay and watershed recovery and factors influencing water quality trends. For over 30 years, the Chesapeake Bay Program Partnership’s long-term tidal and watershed water quality monitoring networks have measured physical, chemical and biological parameters throughout the bay and its surrounding watershed underpinning an adaptive management process to drive ecosystem recovery. There are many natural and anthropogenic factors operating and interacting to affect the watershed and bay water quality recovery responses to management actions. Across habitats and indicators, the bay and its watershed continue to express a diverse spatial and temporal fabric of multiscale conditions, stressors and trends that show a range of health conditions and impairment s , as well as evidence of progress and degradation. Recurrent independent reviews of the monitoring program have driven a culture of continued adaptation of the monitoring networks to reflect ever evolving management information needs. The adherence to bay and watershed-wide consistent monitoring protocols provides monitoring data supporting analyses and development of scientific syntheses that underpin indicator and model development, regulatory assessments, targeting of management actions, evaluation of management effectiveness, and directing of priorities and policies.

Delaware, Maryland, Virginia↗
USGS2022

From data to interpretable models: Machine learning for soil moisture forecasting

Soil moisture is critical to agricultural business, ecosystem health, and certain hydrologically driven natural disasters. Monitoring data, though, is prone to instrumental noise, wide ranging extrema, and nonstationary response to rainfall where ground conditions change. Furthermore, existing soil moisture models generally forecast poorly for time periods greater than a few hours. To improve such forecasts, we introduce two data-driven models, the Naive Accumulative Representation (NAR) and the Additive Exponential Accumulative Representation (AEAR). Both of these models are rooted in deterministic, physically based hydrology, and we study their capabilities in forecasting soilmoisture over time periods longer than a fewhours. Learned model parameters represent the physically based unsaturated hydrological redistribution processes of gravity and suction. We validate our models using soil moisture and rainfall time series data collected from a steep gradient, post-wildfire site in southern California. Data analysis is complicated by rapid landscape change observed in steep, burned hillslopes in response to even small to moderate rain events. The proposed NAR and AEAR models are, in forecasting experiments, shown to be competitive with several established and state-of-the-art baselines. The AEAR model fits the data well for three distinct soil textures at variable depths below the ground surface (5, 15, and 30 cm). Similar robust results are demonstrated in controlled, laboratory-based experiments. Our AEAR model includes readily interpretable hydrologic parameters and provides more accurate forecasts than existing models for time horizons of 10–24 h. Such extended periods of warning for natural disasters, such as floods and landslides, provide actionable knowledge to reduce loss of life and property.

International Journal of Data Science and Analytic↗
USGS2005

Occurrence and distribution of pesticide compounds in surface water of the Santa Ana basin, California, 1998-2001

A study of the occurrence and distribution of pesticide compounds in surface water of the highly urbanized Santa Ana Basin, California, was done as part of the U.S. Geological Survey's National Water-Quality Assessment Program (NAWQA). One-hundred and forty-eight samples were collected from 23 sites, and analyzed for pesticide compounds during the study period from November 1998 to September 2001. Sixty-six different pesticide compounds were detected at varying frequencies and concentrations, and one or more pesticides were detected in 92 percent of the samples. All pesticide concentrations were below maximum levels permitted in drinking water. However, two compounds-diazinon and diuron-exceeded nonenforceable drinking water health-advisory levels in at least one stream sample, and five compounds exceeded guidelines to protect aquatic life-carbaryl, chlorpyrifos, diazinon, lindane, and malathion. Twenty-two pesticide compounds were detected in at least 25 percent of the samples collected from any one fixed site. These are identified as 'major' pesticide compounds and are emphasized in this report. The degree to which pesticides were used in the basin, as well as their physical-chemical properties, are important explanatory factors in stream pesticide occurrence, and most pesticides probably enter streams with urban runoff. Stormflow substantially increases urban runoff, and storm effects on stream pesticide concentrations sometimes persist for several days or weeks after the storm. Water sources other than urban runoff also deliver pesticide compounds to surface water in the basin. For example, atrazine may enter streams in gaining reaches where ground water carries high loads as a result of historical use in the basin. Also, the data suggest that lindane, and perhaps bromacil, are present in treated wastewater, the predominant source of water to streams in the Santa Ana Basin.

Scientific Investigations Report↗
USGS2013

Tools for beach health data management, data processing, and predictive model implementation

This fact sheet describes utilities created for management of recreational waters to provide efficient data management, data aggregation, and predictive modeling as well as a prototype geographic information system (GIS)-based tool for data visualization and summary. All of these utilities were developed to assist beach managers in making decisions to protect public health. The Environmental Data Discovery and Transformation (EnDDaT) Web service identifies, compiles, and sorts environmental data from a variety of sources that help to define climatic, hydrologic, and hydrodynamic characteristics including multiple data sources within the U.S. Geological Survey and the National Oceanic and Atmospheric Administration. The Great Lakes Beach Health Database (GLBH-DB) and Web application was designed to provide a flexible input, export, and storage platform for beach water quality and sanitary survey monitoring data to compliment beach monitoring programs within the Great Lakes. A real-time predictive modeling strategy was implemented by combining the capabilities of EnDDaT and the GLBH-DB for timely, automated prediction of beach water quality. The GIS-based tool was developed to map beaches based on their physical and biological characteristics, which was shared with multiple partners to provide concepts and information for future Web-accessible beach data outlets.

Fact Sheet↗
USGS2011

Microphotographs of cyanobacteria documenting the effects of various cell-lysis techniques

Cyanotoxins are a group of organic compounds biosynthesized intracellularly by many species of cyanobacteria found in surface water. The United States Environmental Protection Agency has listed cyanotoxins on the Safe Drinking Water Act's Contaminant Candidate List 3 for consideration for future regulation to protect public health. Cyanotoxins also pose a risk to humans and other organisms in a variety of other exposure scenarios. Accurate and precise analytical measurements of cyanotoxins are critical to the evaluation of concentrations in surface water to address the human health and ecosystem effects. A common approach to total cyanotoxin measurement involves cell membrane disruption to release the cyanotoxins to the dissolved phase followed by filtration to remove cellular debris. Several methods have been used historically, however no standard protocols exist to ensure this process is consistent between laboratories before the dissolved phase is measured by an analytical technique for cyanotoxin identification and quantitation. No systematic evaluation has been conducted comparing the multiple laboratory sample processing techniques for physical disruption of cell membrane or cyanotoxins recovery. Surface water samples collected from lakes, reservoirs, and rivers containing mixed assemblages of organisms dominated by cyanobacteria, as well as laboratory cultures of species-specific cyanobacteria, were used as part of this study evaluating multiple laboratory cell-lysis techniques in partnership with the U.S. Environmental Protection Agency. Evaluated extraction techniques included boiling, autoclaving, sonication, chemical treatment, and freeze-thaw. Both treated and untreated samples were evaluated for cell membrane integrity microscopically via light, epifluorescence, and epifluorescence in the presence of a DNA stain. The DNA stain, which does not permeate live cells with intact membrane structures, was used as an indicator for cyanotoxin release into the dissolved phase. Of the five techniques, sonication (at 70 percent) was most effective at complete cell destruction while QuikLyse (Trademarked) was least effective. Autoclaving, boiling, and sequential freeze-thaw were moderately effective in physical destruction of colonies and filaments.

Open-File Report↗
USGS2019

Bayesian statistics for beginners: A step-by-step approach

Bayesian statistics is currently undergoing something of a renaissance. At its heart is a method of statistical inference in which Bayes' theorem is used to update the probability for a hypothesis as more evidence or information becomes available. It is an approach that is ideally suited to making initial assessments based on incomplete or imperfect information; as that information is gathered and disseminated, the Bayesian approach corrects or replaces the assumptions and alters its decision-making accordingly to generate a new set of probabilities. As new data/evidence becomes available the probability for a particular hypothesis can therefore be steadily refined and revised. It is very well-suited to the scientific method in general and is widely used across the social, biological, medical, and physical sciences. Key to this book's novel and informal perspective is its unique pedagogy, a question and answer approach that utilizes accessible language, humor, plentiful illustrations, and frequent reference to on-line resources. Bayesian Statistics for Beginners is an introductory textbook suitable for senior undergraduate and graduate students, professional researchers, and practitioners seeking to improve their understanding of the Bayesian statistical techniques they routinely use for data analysis in the life and medical sciences, psychology, public health, business, and other fields.

Book↗
USGS2018

Prioritization framework for ranking riverine ecosystem stressors using example sites from the Tualatin River Basin, Oregon

As human populations increase, so does their influence over the environment. Altered terrain, degraded water quality, and threatened or endangered species are all-too-common consequences of a growing anthropogenic influence on the landscape. To help manage these effects, researchers have developed new ways to characterize current environmental conditions and help resource managers seek solutions to bring affected areas back to their best attainable health. Before an ecosystem can be improved, however, its current level of ecological stress must be determined. Characterizing environmental conditions at many sites across a landscape helps managers understand the range of current conditions and prioritize where they might focus restoration and protection efforts. This report details the development of a prioritization framework to score riverine ecosystem stressors in a watershed based on example sites from the Tualatin River Basin in northwestern Oregon. The framework incorporated the most influential site-specific stressors throughout the basin built on a long history of data collection. These stressors were characterized with 13 metrics that were organized into 4 groups: hydrologic, water quality, physical habitat, and biological. Each stressor metric used readily accessible data and was translated to a score between 0 and 10. The higher the score, the healthier the site. This initial application of the framework used field observations and measurements to rank site conditions at two Tualatin River sites and four Tualatin River tributary sites. Given the versatility of this framework, it easily could be expanded to include more sites or new metrics, if necessary. Because stressors varied by season, all metrics for the tributary sites were scored separately during the wet season (November through April) and dry season (May through October). Water-quality data were available over a prolonged period; therefore, water-quality metrics were assessed by season and by decade (1990–99 compared to 2000–12) to evaluate long-term stressor trends. Results for the Tualatin River Basin prioritization framework indicated that the urban tributaries demonstrated the greatest stress throughout the year, especially during the dry summer months. Spatially, the upper Tualatin River was healthier than the lower reaches of the river. Water-quality has improved in the last 10 years, mostly due to improvements in the dry period contaminant scores, but challenges remain with high water temperatures and low dissolved-oxygen conditions. The biggest challenge with this type of research derived from inconsistencies within the available data. Both spatial and temporal data gaps must be addressed to improve the prioritization. Incorporating both discrete and continuous datasets into the prioritization framework remains a challenge because the datasets have slightly different information and criteria and are not always comparable. Regardless, this report provides guidelines for developing a prioritization framework that ranks the ecological health of sites in a watershed and provides guidance on management actions for improving conditions by targeting factors that greatly affect the health of river ecosystems.

Oregon↗
USGS1970

Tektite 1, man-in-the-sea project: Marine Science Program

The Tektite experiment was designed to provide data for a number of behavioral, biomedical, and engineering studies in addition to the marine sciences program. Conditions for some of these studies were not altogether compatible with the program for the marine sciences. For example, isolation imposed by human behavioral studies precluded physical contact with the surface team, even though such contact was physically possible and desirable for the conduct of the marine sciences program. Isolation also imposed on the scientific team the duty of all in-habitat maintenance, both scheduled and unscheduled, thereby taking substantial time from scientific research. In addition, between 10 and 20 percent of the waking time was devoted to performance of psychological tests required for the biomedical studies. Most of the experiments were directed toward detecting potentially adverse changes and thus were accepted as necessary and desirable. The only health problem to affect the scientific program during the dive was a minor external ear infection contracted by all the divers. Nonetheless, the experiment demon. strated, at least to our satisfaction, the advantages of underwater habitation and saturation diving for biological and geological research. A major advantage is the opportunity for continuous monitoring of organisms or processes. In addition, underwater habitation provides for considerably more research time in the water than surface diving or intermittent bottom dwelling, and this advantage increases greatly as the depth of habitation increases. Even in the relatively shallow depths at which Tektite 1 was conducted, the undersea team could spend appreciably more time at work in the water than their colleagues on the surface. Finally, Tektite 1 demonstrated that the scientist who lives in the sea need not have the extensive qualifications of a professional diver. Of the four scientists of the in-habitat team, only Crew Chief Waller was so qualified; the other three had used scuba as a research tool, but on a relatively limited basis. Any healthy, well-conditioned marine scientist with a basic diving background is capable of extending his research into the shallow sea on a full-time basis. It is hoped that many such scientists will in the future be able to utilize the undersea laboratory.

Science↗
USGS2025

Fomites could determine severity of SARS-CoV-2 outbreaks in low-density white-tailed deer (Odocoileus virginianus) populations

The establishment of a reservoir species for zoonotic diseases is concerning for both animal and human health. Severe acute respiratory syndrome coronavirus (SARS-CoV)-2, the coronavirus responsible for the COVID-19 pandemic, has been detected in white-tailed deer ( Odocoileus virginianus ) in the United States. Since its initial detection, various studies have documented circulation and evolution of SARS-CoV-2 in deer, with human cases suspected of spill-back from infectious deer. A priority for mitigating SARS-CoV-2 outbreaks in deer populations is determining the contribution of direct (via aerosols and physical contact) and indirect (via contaminated objects and media) transmission pathways. We expanded existing epidemiological models founded on direct transmission pathways to include three indirect transmission pathways of infection for simulated deer populations, including contaminated water, food waste, and feed piles. Despite lower infection probabilities and transmission hazards (measured by force-of-infection (FOI)) posed solely by these indirect pathways compared to direct transmission pathways, the addition of indirect transmission pathways increased FOI, which had ramifications for the severity of SARS-CoV-2 outbreaks in simulated deer populations, particularly in populations with low degrees of spread between deer (measured by basic reproductive number; R 0 ). We used contact rate models to estimate SARS-CoV-2 spread across deer range in the United States and identified widespread potential for indirect transmission to increase the severity of outbreaks in low-density deer populations. These results indicate that indirect transmission pathways need to be considered in the management of white-tailed deer as a reservoir species for SARS-CoV-2.

Transboundary and Emerging Diseases↗