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USGS2020

Testing four hypotheses to explain partial migration: Balancing reproductive benefits with limits to fasting endurance

Seasonal migration is ubiquitous in animals, and yet its underlying cause(s) remain poorly known. Species exhibiting short-distance altitudinal migration and intraspecific variation in migratory behavior (partial or differential migration) are ideal study systems for examining the selective pressures that affect individual migratory decisions. We used an individually marked population of yellow-eyed juncos, breeding along a 1000-m elevational gradient and migrating up and down that gradient, to examine the morphological, behavioral, and reproductive traits associated with migratory behavior. We tested the four most well-known hypotheses proposed to explain partial migration: the thermal tolerance, fasting endurance, dominance, and arrival time hypotheses. Our results indicate that: (1) limits to juncos’ fasting endurance constrain their ability to overwinter at high elevations, in support of the fasting endurance hypothesis, (2) differences in body size mediate fasting ability and are associated with variation in migratory behavior and overwinter apparent survival, (3) migratory behavior interacts with reproductive success, in partial support of the arrival time hypothesis, and (4) additional mechanisms that are not captured by the four well-known hypotheses might better explain individual variation in migratory behavior. Less migratory females achieved greater nesting success the following breeding season. Among males, nesting success influenced migratory tendency the following winter. Successful males may either migrate to a more benign winter climate without paying reproductive costs, or high levels of parental effort might physiologically constrain their ability to overwinter in harsh climates.

Behavioral Ecology and Sociobiology↗

USGS2025

Diversity of polyomaviruses and papillomaviruses in penguins from eastern and western Antarctica

Polyomaviruses and papillomaviruses are icosahedral viruses with small circular dsDNA genomes. Limited information on their diversity and evolution in avian hosts is available, with even less known regarding Antarctic penguins. Prior to this study, only one polyomavirus and two papillomaviruses had been identified in Adélie penguins ( Pygoscelis adeliae ). To expand our knowledge of these viruses in Antarctic penguins, we collected faecal and cloacal swab samples from 246 Adélie penguins over 3 breeding seasons (2021–2024) and 10 emperor penguins ( Aptenodytes forsteri ) during the 2023–2024 season on Ross Island (Ross Sea). Additionally, we sampled 66 Adélie, 40 chinstrap ( Pygoscelis antarcticus ) and 71 gentoo ( Pygoscelis papua ) penguins during the 2022–2023 season across various sites on the Antarctic Peninsula. All samples were screened for papillomaviruses and polyomaviruses. We identified 31 polyomaviruses in Adélie, gentoo and chinstrap penguins and 4 papillomaviruses in Adélie penguins sampled in both eastern and western Antarctica. The 31 penguin polyomaviruses belong to a single species but form four distinct variants that are host species specific with strong geographic clustering. The four papillomaviruses represent three different types, of which two are new types from Adélie penguins sampled on Yalour Island in the West Antarctic Peninsula. Co-occurrence of two polyomavirus variants was identified in two individual gentoo penguins. Both of these variants appear to be circulating in gentoo penguins at Cierva Cove, Hope Bay in Trinity Peninsula along the Antarctic Peninsula, and at Hannah Point on Livingstone Island and Stranger Point on King George Island in the South Shetland Islands. Here, we expand the known diversity, host and geographical ranges of penguin polyomaviruses and, together with a previously identified polyomavirus on Ross Island from 2012 to 2013, show that they form five distinct lineages. The four papillomaviruses identified in this study, together with two previously identified from Ross Island in 2012 and 2013 breeding seasons, show substantial diversity reflecting four papillomavirus types across three viral species and two distinct genera. Continued surveillance and viral genomic analysis across a larger geographical framework will help understand the evolution, transmission and incidence rates of these viruses.

Microbial Genomics↗

USGS2021

Hawaiian hoary bat acoustic surveys on Marine Corps Base Hawaii, 2019–2021

The endangered Hawaiian hoary bat ( Lasiurus semotus, Vespertilionidae, also known as Aeorestes semotus and ‘ōpe‘ape‘a) occurs on all the principal volcanic islands in Hawai‘i. Advances in acoustic bat monitoring techniques have contributed to the body of knowledge of bat activity and behavior in many areas of the State of Hawai‘i; however, there is still much that is unknown about the population and seasonal distribution of Hawaiian hoary bats on O‘ahu. A two-year acoustic survey for presence of Hawaiian hoary bats was conducted at 17 stations across four Marine Corps Base Hawaii (MCBH) properties on O‘ahu to document distribution, seasonal patterns, and foraging activity. Bats were confirmed present at all properties; MCBH Kaneohe Bay on Mōkapu Peninsula, Marine Corps Training Area Bellows (MCTAB) in Waimanalo, Camp H M Smith in Halawa Heights, and Puuloa Range Training Facility (RTF) on the ‘Ewa coastal plain. Hawaiian hoary bats were recorded in airspace at all four properties during important periods of Hawaiian hoary bat life history, including periods of pregnancy, lactation, and pup fledging; however, overall presence was low. Foraging activity as identified from characteristic feeding buzzes was very rare and was recorded on only three nights over the entire study. Within-night bat detection pooled for all nights and stations at each property showed that bat activity was mostly confined to the first several hours of the night at MCBH Kaneohe Bay and Puuloa RTF, whereas bat activity was spread throughout the night at Camp H M Smith and MCTAB. Overall, detection frequency was low (year 1 = 0.009, year 2 = 0.007, average = 0.008) at the study sites on O‘ahu compared to results from acoustic monitoring studies on the islands of Maui and Hawai‘i. However, the low rate of bat presence on MCBH properties is consistent with recent studies at other locations on the Island of O‘ahu. Monitoring the seasonal presence and distribution of Hawaiian hoary bats on MCBH facilities, especially at forest and wetland habitats, could contribute to the broader scientific understanding of islandwide distribution and behavior on O‘ahu, which is essential for species recovery planning and implementation of best management practices.

Hawaii↗

USGS2014

Survival of adult Red-throated Loons (Gavia stellata) may be linked to marine conditions

Large variations in the summering population size of Red-throated Loons ( Gavia stellata) have occurred in recent decades in Alaska. Little information exists about annual or seasonal survival rates of adult Red-throated Loons. This study used tracking data from satellite transmitters implanted into 33 Red-throated Loons captured on breeding areas in Alaska to estimate annual survival with the sampling effort split between two study periods: 2000–2002 and 2008–2010. Mortality was inferred from transmitted sensor data that indicated body temperature of the Red-throated Loon and voltage of the transmitter's battery. Two definitive mortalities occurred, resulting in an annual survival estimate of 0.920 (SE = 0.054). The fates of two additional Red-throated Loons were ambiguous and, when treated as mortalities, the annual survival estimate was 0.838 (SE = 0.074). All four putative mortalities occurred during the non-breeding season in the early study period. Oceanic conditions, indexed by the Pacific Decadal Oscillation, appeared to differ between the study periods with higher Pacific Decadal Oscillation values associated with the early study period. Given that high values for Pacific Decadal Oscillation were also associated with the large decline of Red-throated Loons observed in Alaska during 1977–1993, this study suggests that survival of adult Red-throated Loons may vary in relation to the state of the marine ecosystem and thus contribute to long-term variation in population trends.

Waterbirds↗

USGS2019

Seasonal fluxes of dissolved nutrients in streams of catchments dominated by swidden agriculture in the Maya Forest of Belize, Central America

The biogeochemistry of nitrogen (N) and phosphorus (P) in tropical streams and rivers is strongly regulated by the pronounced seasonality of rainfall and associated changes in hydrology. Land use and land cover change (LULCC) can also be a dominant driver of changes in stream biogeochemistry yet responses are not fully understood and vary across different LULCC scenarios. We measured dissolved and total nitrogen (N) and phosphorus (P) concentrations in four tributary streams of the Temash River watershed in southern Belize, Central America. The dominant land use practice in each of the four study catchments was swidden agriculture. We documented a strong seasonal control on the export of nutrients from these study systems with daily N fluxes increasing approximately 10-fold during the onset of the rainy season. P fluxes increased almost 4-fold during the same time period. Comparisons with nutrient export coefficients from other tropical streams suggest that nutrient export in streams of the Temash River watershed is similar or slightly lower. Establishing improved understanding of the terrestrial and hydrologic controls of N and P transport across the terrestrial-aquatic boundary and developing a comprehensive nutrient budget that includes inputs and outputs associated with crop production is warranted in future work.

Water↗

USGS2022

Addressing detection uncertainty in Bombus affinis (Hymenoptera: Apidae) surveys can improve inferences made from monitoring

The U.S. Fish and Wildlife Service developed national guidelines to track species recovery of the endangered rusty patched bumble bee [ Bombus affinis Cresson (Hymenoptera: Apidae)] and to investigate changes in species occupancy across space and time. As with other native bee monitoring efforts, managers have specifically acknowledged the need to address species detection uncertainty and determine the sampling effort required to infer species absence within sites. We used single-season, single-species occupancy models fit to field data collected in four states to estimate imperfect detection of B. affinis and to determine the survey effort required to achieve high confidence of species detection. Our analysis revealed a precipitous, seasonal, decline in B. affinis detection probability throughout the July through September sampling window in 2021. We estimated that six, 30-min surveys conducted in early July are required to achieve a 95% cumulative detection probability, whereas >10 surveys would be required in early August to achieve the same level of confidence. Our analysis also showed B. affinis was less likely to be detected during hot and humid days and at patches of reduced habitat quality. Bombus affinis was frequently observed on Monarda fistulosa (Lamiales: Lamiaceae), followed by [ Pycnanthemum virginianum Rob. and Fernald (Lamiales: Lamiaceae)] , Eutrochium maculatum Lamont (Asterales: Asteraceae), and Veronicastrum virginicum Farw. (Lamiales: Plantaginaceae). Although our research is focused on B. affinis , it is relevant for monitoring other bumble bees of conservation concern, such as B. occidentalis Greene (Hymenoptera: Apidae) and B. terricola Kirby (Hymenoptera: Apidae) for which monitoring efforts have been recently initiated and occupancy is a variable of conservation interest.

Illinois, Iowa, Minnesota, Wisconsin↗

USGS2018

Differential changes in the onset of spring across US National Wildlife Refuges and North American migratory bird flyways

Warming temperatures associated with climate change can have indirect effects on migratory birds that rely on seasonally available food resources and habitats that vary across spatial and temporal scales. We used two heat-based indices of spring onset, the First Leaf Index (FLI) and the First Bloom Index (FBI), as proxies of habitat change for the period 1901 to 2012 at three spatial scales: the US National Wildlife Refuge System; the four major bird migratory flyways in North America; and the seasonal ranges (i.e., breeding and non-breeding grounds) of two migratory bird species, Blue-winged Warbler ( Vermivora cyanoptera ) and Whooping Crane ( Grus americana ). Our results show that relative to the historical range of variability, the onset of spring is now earlier in 76% of all wildlife refuges and extremely early (i.e., exceeding 95% of historical conditions) in 49% of refuges. In all flyways but the Pacific, the rate of spring advance is generally greater at higher latitudes than at lower latitudes. This differential rate of advance in spring onset is most pronounced in the Atlantic flyway, presumably because of a “warming hole” in the southeastern US. Both FLI and FBI have advanced markedly in the breeding ranges–but not the non-breeding ranges–of the two selected bird species, albeit with considerable intra-range variation. Differences among species in terms of migratory patterns and the location and extent of seasonal habitats, as well as shifts in habitat conditions over time, may complicate predictions of the vulnerability of migratory birds to climate change effects. This study provides insight into how differential shifts in the phenology of disparate but linked habitats could inform local- to landscape-scale management strategies for the conservation of migratory bird populations.

PLoS ONE↗

USGS2008

Age-class structure and variability of two populations of the bluemask darter etheostoma (Doration) sp.

The bluemask darter Etheostoma ( Doration ) sp. is an endangered fish endemic to the upper Caney Fork system in the Cumberland River drainage in central Tennessee. Darters ( Etheostoma spp.) are typically short-lived and exhibit rapid growth that quickly decreases with age. Consequently, estimating age of darters from length-frequency distributions can be difficult and subjective. We used a nonparametric kernel density estimator to reduce subjectivity in estimating ages of bluemask darters. Data were collected from a total of 2926 bluemask darters from the Collins River throughout three growing seasons. Additionally, data were collected from 842 bluemask darters from the Rocky River during one growing season. Analysis of length-frequencies indicated the presence of four age classes in both rivers. In each river, the majority of the population was comprised of fish <3 y old. Some age-one individuals were sexually mature, but the majority of the reproductive population was comprised of older fish. Differences in age-class structure among years reflected variable year-class strength in the Collins River that seemed related to summer discharge. Male and female growth rates differed significantly (P < 0.05); males were typically larger than females of the same age after the first growing season and the majority of age-three individuals were males. Growth rates in the Collins and Rocky Rivers were similar for each sex (P > 0.05). In both rivers, females were more abundant than males.

Tennessee↗

USGS2024

Survey effort and targeted landbird community metrics at Indiana lowland forest restoration sites

Many sampling and analytical methods can estimate the abundance, distributions, and diversity of birds and other wildlife. However, challenges with sample size and analytical capacity can make these methods difficult to implement for resource-limited monitoring programs. To apprise efficient and attainable sampling designs for landbird monitoring programs with limited observational data, we used breeding season bird point survey data collected in 2016 at four forest restoration sites in Indiana, USA. We evaluated three subsets of observed species richness, total possibly breeding landbirds, Partners in Flight Regional Conservation Concern (PIF RCC) landbirds, and interior forest specialists (IFSs). Simulated surveys based on field data were used to conduct Bayesian Michaelis–Menten curve analyses estimating observed species as a function of sampling effort. On comparing simulated survey sets with multiple habitat types versus those with one habitat, we found that those with multiple habitat types had estimated 39%–83% greater observed PIF RCC species richness and required 41%–55% fewer visits per point to observe an equivalent proportion of PIF RCC species. Even with multiple habitats in a survey set, the number of visits per point required to detect 50% of observable species was 30% higher for PIF RCC species than for total breeding landbird species. Low detection rates of IFS species at two field sites made precise estimation of required effort to observe these species difficult. However, qualitatively, we found that only sites containing mature forest fragments had detections of several bird species designated as high-confidence IFS species. Our results suggest that deriving specialized species diversity metrics from point survey data can add value when interpreting those data. Additionally, designing studies to collect these metrics may require explicitly planning to visit multiple habitat types at a monitoring site and increasing the number of visits per survey point.

Indiana↗

USGS2018

Reproductive success and contaminant associations in tree swallows (Tachycineta bicolor) used to assess a Beneficial Use Impairment in U.S. and Binational Great Lakes’ Areas of Concern

During 2010-2014, tree swallow (Tachycineta bicolor) reproductive success was monitored at 68 sites across all 5 Great Lakes, including 58 sites located within Great Lakes Areas of Concern (AOCs) and 10 non-AOCs. Sample eggs were collected from tree swallow clutches and analyzed for contaminants including polychlorinated biphenyls (PCBs), dioxins and furans, polybrominated diphenyl ethers, and 34 other organic compounds. Contaminant data were available for 360 of the clutches monitored. Markov chain multistate modeling was used to assess the importance of 5 ecological variables and 11 of the dominant contaminants in explaining the pattern of egg and nestling failure rates. Four of 5 ecological variables (Female Age, Date within season, Year, and Site) were important explanatory variables. Of the 11 contaminants, only total dioxin and furan toxic equivalents (TEQs) explained a significant amount of the egg failure probabilities. Neither total PCBs nor PCB TEQs explained the variation in egg failure rates. In a separate analysis, polycyclic aromatic hydrocarbon exposure in nestling diet, used as a proxy for female diet during egg laying, was significantly correlated with the daily probability of egg failure. The 8 sites within AOCs which had poorer reproduction when compared to 10 non-AOC sites, the measure of impaired reproduction as defined by the Great Lakes Restoration Initiative, were associated with exposure to dioxins and furan TEQs, PAHs, or depredation. Only 2 sites had poorer reproduction than the poorest performing non-AOC. Using a classic (non-modeling) approach to estimating reproductive success, 82% of nests hatched at least 1 egg, and 75% of eggs laid, excluding those collected for contaminant analyses, hatched.

Great Lakes↗

USGS1965

Additional records of aspergillosis among passerine birds in Maryland and the Washington, DC metropolitan area

Two cases of aspergillosis involving four adult cowbirds ( Molothrus ater ) collected during the nesting season are reported. Aspergillosis was found in house sparrows ( Passer domesticus ) on two occasions.

Maryland↗

USGS1976

Water-quality study of a reach of the Merced River in Yosemite National Park and vicinity, California, April 1973 through September 1974

A 25-mile (40-kilometre) reach of the Merced River was studied to provide the National Park Service with water-quality data prior to the operation of a new sewage-treatment plant. Data were collected periodically at four Merced River and two inflow stations. Discharge varied seasonally with highest flow occurring at the time of spring snowmelt runoff. Lowest flow occurred during late summer, coinciding with high park visitor use and elevated water temperature. Water-quality variables investigated were discharge, temperature, major chemical constituents, selected trace metals, specific conductance, suspended sediment, turbidity, dissolved oxygen, pH, alkalinity, carbon dioxide, total organic carbon, nitrogen, phosphorus, algal growth potential, coliform bacteria, periphyton, and benthic invertebrates. Diel measurements were made at some stations to delineate daily fluctuations in selected water-quality variables. Results indicate that water in the reach of the Merced River studied was of good quality. The river had low concentrations of dissolved solids (8 to 41 milligrams per litre) and low alkalinity values (2 to 24 milligrams per litre of alkalinity as CaCO 3 ). Mean concentrations of nitrogen and phosphorus were highest in the Merced River at Rancheria Flat. Algal growth potential tests showed that phosphorus was limiting algal growth at Happy Isles Bridge, El Capitan Bridge, and South Fork Merced River, whereas nitrogen was limiting growth at Rancheria Flat. Input of excessive nitrogen and phosphorus concentrations in the Merced River during the summer low-flow period, and mixing with warm tributary inflow could cause excessive algal growth and production. The algal types found were diatoms, green algae, and blue-green algae. Biomass/chlorophyll a ratios in the Merced River were low (0.3 to 7.7). Benthic invertebrates consisted chiefly of Diptera, Ephemeroptera, and Plecoptera.

California↗

USGS2014

Sources, transport, and trends for selected trace metals and nutrients in the Coeur d'Alene and Spokane River Basins, Idaho, 1990-2013

Data collected at 18 streamflow-gaging and water-quality sampling sites in the Coeur d’Alene and Spokane River Basins of northern Idaho were used to estimate mean streamflow‑weighted concentrations and annual loads of total and dissolved cadmium, lead, and zinc, and total phosphorus (TP) and nitrogen (TN) for water years (WYs) 2009–13. Chronic Ambient Water Quality Criteria (AWQC) and AWQC ratios also were calculated to evaluate Idaho aquatic life criteria for chronic exposure to cadmium and zinc in streams. At four sites with a longer period of record, a Seasonal Kendall trend test was used to assess historical trends in the concentrations of total cadmium, lead, and zinc, and chronic AWQC ratios for cadmium and zinc during WYs 1990–2013. Concentrations of dissolved and total cadmium, lead, and zinc varied widely both at and among sites. At most sites, dissolved cadmium and zinc constituted most of the total concentrations; dissolved lead generally constituted less than 10 percent of the total lead concentration. Trace metal concentrations increased by 2 to 4 orders of magnitude along the South Fork Coeur d’Alene River (SFCDR) from near Mullan (site 2) downstream to near Pinehurst (site 13). The mean streamflow-weighted concentrations of total cadmium, lead, and zinc in the SFCDR near Pinehurst for WYs 2009–13 were 3.71, 61.4, and 514 micrograms per liter (μg/L), respectively. In the Coeur d’Alene River (CDR) near Harrison (site 15), downstream of the confluence of the metal-enriched SFCDR and the relatively dilute North Fork Coeur d’Alene River (NFCDR), the mean streamflow-weighted concentrations of total cadmium, lead, and zinc were 1.58, 125, and 236 μg/L, respectively. Trace‑metal concentrations were smaller in the Spokane River than in the CDR because of dilution and retention of trace metals in Coeur d’Alene Lake. The mean streamflow-weighted concentrations of total cadmium, lead, and zinc in the Spokane River near Post Falls (site 18) were 0.231, 2.91, and 48.9 μg/L, respectively. AWQC ratios indicate that cadmium and zinc concentrations met the chronic criteria (ratio of less than 1.0) for the protection of aquatic life at only three sites: the NFCDR at Enaville (site 1), the upper SFCDR near Mullan (site 2), and the St. Joe River near St. Maries (site 16). Cadmium and zinc concentrations at sites on the Spokane River (sites 17 and 18) generally were close to the chronic AWQC values. The sites with the largest chronic AWQC ratios in the Coeur d’Alene and Spokane River Basins for both cadmium and zinc were in the Canyon and Ninemile Creek basins (sites 3–6). Concentrations of TP and TN generally were low along the SFCDR downstream to Kellogg. From the SFCDR near Kellogg (site 9) downstream to the SFCDR above Pine Creek (site 11), the mean streamflow-weighted concentration of the nutrients TP and TN increased by 0.036 milligram per liter (mg/L) (200 percent) and 0.124 mg/L (78 percent), respectively. The increases in nutrient concentrations along the SFCDR likely are in response to discharge from wastewater‑treatment facilities. Mean streamflow-weighted concentrations for TP and TN (0.054 and 0.284 mg/L, respectively) were the highest in the sampling network in the SFCDR above Pine Creek (site 11). LOADEST modeling was used to relate mass transport, or load, of trace metals and nutrients to variations in streamflow and time. Results indicate that most of the cadmium and zinc load in the Coeur d’Alene and Spokane Rivers is derived from the SFCDR, and that most of the lead load is derived from the Coeur d’Alene River downstream of the confluence of the NFCDR and SFCDR. Major tributary sources of trace metals to the SFCDR are Canyon Creek and Ninemile Creek. Combined, these two tributaries contributed estimated mean loads of about 0.575 ton per year (ton/yr) of total cadmium, 5.29 ton/yr of total lead, and 90.9 ton/yr of total zinc to the SFCDR during WYs 2009–13. Groundwater discharge and tributaries near the Central Impoundment Area between SFCDR near Kellogg (site 9) and SFCDR near Smelterville (site 10) were other primary sources of cadmium and zinc. Combined, these sources contributed an estimated 1.39 ton/yr of total cadmium and 143 ton/yr of total zinc to the SFCDR during WYs 2009–13. Erosion and transport of sediment-bound lead contained in the CDR flood plain and on the river bottom between Cataldo (site 14) and Harrison (site 15) were the primary source of lead. During WYs 2009–13, the mean load of trace metals delivered to Coeur d’Alene Lake included about 4.66 ton/yr of total cadmium, 398 ton/yr of total lead, and 698 ton/yr of total zinc. About 99 percent of the trace-metal load to the lake was from the CDR as measured near site 15 at Harrison. During WYs 2009–13, about 1.48 ton/yr of cadmium, 18 ton/yr of lead, and 350 ton/yr of zinc were transported from Coeur d’Alene Lake into the Spokane River as measured at the lake outlet (site 17). During WYs 2009–13, the loads of TP and TN delivered from the Coeur d’Alene and St. Joe Rivers to Coeur d’Alene Lake were about equivalent. On average, the CDR transported about 93.6 tons of TP and 369 tons of TN, and the St. Joe River transported about 92.9 tons of TP and 360 tons of TN to the lake during 2009–13. About 52.9 ton/yr of TP and 628 ton/yr of TN were transported from Coeur d’Alene Lake to the Spokane River during WYs 2009–13. Results from Seasonal Kendall trend tests indicate statistically significant downward temporal trends during WYs 1990–2013 for total cadmium, lead, zinc, and chronic AWQC ratios of cadmium and zinc in the SFCDR at Elizabeth Park (site 8) and near Pinehurst (site 13), and in the CDR near Harrison (site 15). Statistically significant downward temporal trends for total lead, zinc, and the chronic AWQC ratio of zinc also occurred in the Spokane River near Post Falls (site 18) during WYs 1991–2013. Seasonal Kendall trend tests for WYs 2003–13 indicated statistically significant downward trends for total cadmium, zinc, and chronic AWQC ratios of cadmium and zinc in the SFCDR at Elizabeth Park (site 8). The Spokane River near Post Falls (site 18) had a statistically significant downward trend for total zinc during WYs 2003–13, and a significant upward trend for the chronic AWQC ratio of cadmium. No significant trends were found in trace-metal concentrations or chronic AWQC ratios in the SFCDR near Pinehurst (site 13) and the CDR near Harrison (site 15) during WYs 2003–13. Results from this study indicate that remedial activities conducted since the 1990s have been successful in reducing the concentrations and loads of trace metals in streams and rivers in the Coeur d’Alene and Spokane River Basins. Soils, sediment, surface water, and groundwater in areas of the Coeur d’Alene and Spokane River Basins are contaminated, and the hydrological relations between these media are complex and difficult to characterize. Trace metals have variable source areas, are transported differently depending on hydrologic conditions, and behave differently in response to remedial activities in upstream basins. Based on these findings, no single remedial action would be completely effective in reducing all trace metals to nontoxic concentrations throughout the Coeur d’Alene and Spokane River Basins. Instead, unique cleanup activities targeted at specific media and specific source areas may be necessary to achieve long-term water-quality goals.

Idaho↗

USGS2018

Simulation of hydrodynamics, water quality, and lake sturgeon habitat volumes in Lake St. Croix, Wisconsin and Minnesota, 2013

Lake St. Croix is a naturally impounded, riverine lake that makes up the last 40 kilometers of the St. Croix River. Substantial land-use changes during the past 150 years, including increased agriculture and urban development, have reduced Lake St. Croix water-quality and increased nutrient loads delivered to Lake St. Croix. A recent (2012–13) total maximum daily load phosphorus-reduction plan set the goal to reduce total phosphorus loads to Lake St. Croix by 20 percent by 2020 and reduce Lake St. Croix algal bloom frequencies. The U.S. Geological Survey, in cooperation with the National Park Service, developed a two-dimensional, carbon-based, laterally averaged, hydrodynamic and water-quality model, CE–QUAL–W2, that addresses the interaction between nutrient cycling, primary production, and trophic dynamics to predict responses in the distribution of water temperature, oxygen, and chlorophyll a. Distribution is evaluated in the context of habitat for lake sturgeon, including a combination of temperature and dissolved oxygen conditions termed oxy-thermal habitat. The Lake St. Croix CE–QUAL–W2 model successfully reproduced temperature and dissolved oxygen in the lake longitudinally (from upstream to downstream), vertically, and temporally over the seasons. The simulated water temperature profiles closely matched the measured water temperature profiles throughout the year, including the prediction of thermocline transition depths (often within 1 meter), the absolute temperature of the thermocline transitions (often within 1.0 degree Celsius), and profiles without a strong thermocline transition. Simulated dissolved oxygen profiles matched the trajectories of the measured dissolved oxygen concentrations at multiple depths over time, and the simulated concentrations matched the depth and slope of the measured concentrations. Additionally, trends in the measured water-quality data were captured by the model simulation, gaining some potential insights into the underlying mechanisms of critical Lake St. Croix metabolic processes. The CE–QUAL–W2 model tracked nitrate plus nitrite, total nitrogen, and total phosphorus throughout the year. Inflow nutrient contributions (loads), largely dominated by upstream St. Croix River loads, were the most important controls on Lake St. Croix water quality. Close to 60 percent of total phosphorus to the lake was from phosphorus derived from organic matter, and about 89 percent of phosphorus to Lake St. Croix was delivered by St. Croix River inflows. The Lake St. Croix CE–QUAL–W2 model offered potential mechanisms for the effect of external and internal loadings on the biotic response regarding the modeled algal community types of diatoms, green algae, and blue-green algae. The model also suggested the seasonal dominance of blue-green algae in all four pools of the lake. A sensitivity analysis was completed to test the total maximum daily load phosphorus-reduction scenario responses of total phosphorus and chlorophyll a. The modeling indicates that phosphorus reductions would result in similar Lake St. Croix reduced concentrations, although chlorophyll a concentrations did not decrease in the same proportional amounts as the total phosphorus concentrations had decreased. The smaller than expected reduction in algal growth rates highlighted that although inflow phosphorus loads are important, other constituents also can affect the algal response of the lake, such as changes in light penetration and the breakdown of organic matter releasing nutrients. The available habitat suitable for lake sturgeon was evaluated using the modeling results to determine the total volume of good-growth habitat, optimal growth habitat, and lethal temperature habitat. Overall, with the calibrated model, the fish habitat volume in general contained a large proportion of good-growth habitat and a sustained period of optimal growth habitat in the summer. Only brief periods of lethal oxy-thermal habitat were present in Lake St. Croix during the model simulation.

Minnesota, Wisconsin↗

USGS1952

Preliminary summary of reconnaissance for uranium on the Seward Peninsula, Alaska, During 1951

Reconnaissance examinations for uranium were made at nine localities in the York, Nome, and Koyuk districts of the Seward Peninsula, Alaska, during .the 1951 field season. In addition carborne radiometric traverses were made of four roads in the Nome and Council districts. Only at Brooks Mountain in the York district are uranium-bearing deposits that required detailed study. On the southwest flank of Brooks Mountain, zeunerite occurs as a surface coating on quartz-tourmaline veins occupying joint fractures in granite| at a second locality, also on the southwest flank of the mountain, zeunerite is disseminated in a highly-weathered, altered zone of granite near a contact with limestone. Preliminary radiometric analyses show an average of about 0.05 percent equivalent uranium in the vein material and about 0.07 percent equivalent uranium in the weathered, altered granitic zone.

Alaska↗

USGS1980

Water quality of Tampa Bay, Florida, June 1972 - May 1976

A comprehensive assessment of the water quality of Tampa Bay, Florida, was initiated in 1970 to provide background information to evaluate the effects of widening and deepening the ship channel to the port of Tampa. This report provides results of water-quality sampling in the bay from 1972 to 1976, prior to dredging. Measurements of temperature, dissolved oxygen, pH, turbidity, specific conductance, biochemical oxygen demand, and total organic carbon were made as well as measurements for several nutrient, metal, and pesticide parameters. Many parameters were measured at as many as three points in the vertical. These data indicate that Tampa Bay is well-mixed vertically with little density stratification. Time histories of average temperature, dissolved oxygen, pH, turbidity, specific conductance and nutrient values within four subareas of Tampa Bay are given to reveal seasonal or other trends during the period of record. Temperature, dissolved oxygen, pH, turbidity, specific conductance, nutrient, biochemical oxygen demand, total organic carbon, and metal data are also presented as areal distributions. Nutrient concentrations were generally higher in Hillsborough Bay than in other sub-areas of Tampa Bay. Biochemical oxygen demand, total organic carbon, and total organic nitrogen distribution patterns show regions of highest concentrations to be along bay shorelines near population centers. Of the metals analyzed, all were present in concentrations of less than 1 milligram per liter. (USGS)

Florida↗

USGS2006

Occupancy Estimation and Modeling : Inferring Patterns and Dynamics of Species Occurrence

This is the first book to examine the latest methods in analyzing presence/absence data surveys. Using four classes of models (single-species, single-season; single-species, multiple season; multiple-species, single-season; and multiple-species, multiple-season), the authors discuss the practical sampling situation, present a likelihood-based model enabling direct estimation of the occupancy-related parameters while allowing for imperfect detectability, and make recommendations for designing studies using these models. It provides authoritative insights into the latest in estimation modeling; discusses multiple models which lay the groundwork for future study designs; addresses critical issues of imperfect detectibility and its effects on estimation; and explores the role of probability in estimating in detail.

Book↗

USGS1989

Acid precipitation studies in Colorado and Wyoming: interim report of surveys of montane amphibians and water chemistry

Acid deposition may be detrimental or stressful to native populations of wildlife. Because many species of amphibians breed in shallow ponds created by spring rains or melting snow, they may be particularly vulnerable to the effects of acidification. From 1986 to 1988, we surveyed 105 locations in the central Rocky Mountains where amphibians had been recorded previously, and we found that two species of amphibians had experiences major losses. We found the northern leopard frog ( Rana pipiens ) at only 4 of 33 (12%) historically known localities, and the boreal toad ( Bufo boreas ) was present at 10 of 59 (17%) known localities. Three other species have not suffered region-wide declines. Tiger salamanders ( Ambystoma tigrinum ) and wood frogs ( Rana sylvatica ) were present at 45% and 69% of known localities respectively, and were observed at several localities were they had not been recorded previously. Chorus frogs ( Pseudacris triseriata ) suffered a catastrophic decline in population size in one population monitored since 1961, but regionally, this species was observed in 36 of 56 (64%) known localities and in another 19 localities where there were no previous records. Complete water chemistry was recorded for 41 localities, and pH was measured at 110 sites in total. Acid neutralizing capacity, pH, specific conductivity, and cation concentrations were negatively correlated with elevation. However, in mountain ponds and lakes, pH was rarely less than 6.0 during the amphibian breeding season. We tested the tolerance of embryos of the four species of frogs to low pH. The LC 50 pH was 4.8 for chorus frogs, 4.4-4.7 for leopard frogs, 4.4-4.5 for boreal toads, and 4.2-4.3 for wood frogs. Survival of wood frog embryos declined when exposed to aluminum concentrations of 100 µg/L or greater, but boreal toad embryos survived exposure to aluminum concentrations of 400 µg/L. Acid deposition does not appear to be a major factor in the decline of leopard frogs and boreal toads. However, we have not yet investigated effects of sublethal pH on growth and development of tadpoles. Pollution remains suspect, but other factors, including natural fluctuations in population size, may account for the observed declines.

Colorado;Wyoming↗