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At least 199 records · Page 11Linked to original sources
USGS2023

Updated decision analysis to inform multi-species salmonine management in Lake Michigan

The recreational fishery for salmonine species in Lake Michigan (lake trout, Chinook salmon, coho salmon, steelhead, and brown trout) is largely maintained through stocking. Decisions about how many of each species to stock require an understanding of how to maintain a sustainable balance of predators (salmonine species) to prey (alewife) in the lake. The current models used to make these decisions can estimate the ratio of Chinook salmon to alewife in the lake. However, the Lake Michigan Committee’s new stocking strategy aims to incorporate the other salmonine species into this predator-prey ratio. We used structured decision making to evaluate potential stocking strategies. We worked with fishery stakeholders and members of the Lake Michigan Committee, conducted participatory modeling to forecast outcomes of stocking scenarios using updated information on fish movement and feeding, and evaluated the risk of these stocking strategies. Most of the stocking practices we evaluated resulted in a high risk of large declines in alewife abundance, negatively affecting future salmon fisheries. The forecasts were substantially more pessimistic than those resulting from a similar analysis conducted a decade earlier, apparently due to more recent alewife assessments indicating lower alewife productivity (recruits per spawner). Alewife recruitment dynamics is an area of substantial uncertainty, with apparently large consequences for management; decision makers on Lake Michigan would benefit from greater understanding of alewife recruitment dynamics to reduce this uncertainty when accounting for risks.

Lake Michigan↗
USGS2012

Predicted eelgrass response to sea level rise and its availability to foraging Black Brant in Pacific coast estuaries

Managers need to predict how animals will respond to habitat redistributions caused by climate change. Our objective was to model the effects of sea level rise on total eelgrass ( Zostera marina ) habitat area and on the amount of that area that is accessible to Brant geese ( Branta bernicla ), specialist grazers of eelgrass. Digital elevation models were developed for seven estuaries from Alaska, Washington, California (USA), and Mexico. Scenarios of future total eelgrass area were derived from combinations of estuarine specific sediment and tectonic rates (i.e., bottom change rate) with three rates of eustatic sea level rise (ESLR). Percentages of total eelgrass areas that were accessible to foraging Brant were determined for December when the birds overwinter at more southerly sites and in April as they move north to sites where they build body stores on their way to nesting areas in Alaska. The modeling showed that accessible eelgrass area could be lower than total area due to how daytime low-tide height, eelgrass shoot length, and the upper elevation of eelgrass determined Brant-reaching depth. Projections of future eelgrass area indicated that present-day ESLR (2.8 mm/yr) and bottom change rates should sustain the current pattern of estuarine use by Brant except in Morro Bay, where use should decrease because eelgrass is being ejected from this estuary by a positive bottom change rate. Higher ESLR rates (6.3 and 12.7 mm/yr) should result in less Brant use of estuaries at the northern and southern ends of the flyway, particularly during the winter, but more use of mid-latitude estuaries. The capacity of mid-latitude estuaries to function as Brant feeding refugia, or for these estuaries and Izembek Lagoon to provide drift rather than attached leaves, is eventually limited by the decrease in total eelgrass area, which is a result of a light extinction affect on the eelgrass, or the habitat being pushed out of the estuary by positive tectonic rates. Management responses are limited to the increase or decrease of sediment supply and the relocation of levees to allow for upslope migration of eelgrass habitat.

Alaska;California;Washington↗
USGS2013

Effects of plant phenology and vertical height on accuracy of radio-telemetry locations

The use of very high frequency (VHF) radio-telemetry remains wide-spread in studies of wildlife ecology and management. However, few studies have evaluated the influence of vegetative obstruction on accuracy in differing habitats with varying transmitter types and heights. Using adult and fawn collars at varying heights above the ground (0, 33, 66 and 100 cm) to simulate activities (bedded, feeding and standing) and ages (neonate, juvenile and adult) of deer Odocoileus spp., we collected 5,767 bearings and estimated 1,424 locations (28-30 for each of 48 subsamples) in three habitat types (pasture, grassland and forest), during two stages of vegetative growth (spring and late summer). Bearing error was approximately twice as large at a distance of 900 m for fawn (9.9°) than for adult deer collars (4.9°). Of 12 models developed to explain the variation in location error, the analysis of covariance model (HT*D + C*D + HT*TBA + C*TBA) containing interactions of height of collar above ground (HT), collar type (C), vertical height of understory vegetation (D) and tree basal area (TBA) was the best model (w i = 0.92) and explained ∼ 71% of the variation in location error. Location error was greater for both collar types at 0 and 33 cm above the ground compared to 66 and 100 cm above the ground; however, location error was less for adult than fawn collars. Vegetation metrics influenced location error, which increased with greater vertical height of understory vegetation and tree basal area. Further, interaction of vegetation metrics and categorical variables indicated significant effects on location error. Our results indicate that researchers need to consider study objectives, life history of the study animal, signal strength of collar (collar type), distance from transmitter to receiver, topographical changes in elevation, habitat composition and season when designing telemetry protocols. Bearing distances in forested habitat should be decreased (approximately 23% in our study) compared to bearing distances in open habitat to maintain a consistent bearing error across habitats. Additionally, we believe that field biologists monitoring neonate ungulates for habitat selection should rely on visual locations rather than using VHF-collars and triangulation.

South Dakota↗
USGS2006

Response of fishes to floodplain connectivity during and following a 500-year flood event in the unimpounded upper Mississippi River

We examined data collected on fish assemblage structure among three differing floodplain types (broad, moderate, and narrow) during the 1993 flood in the unimpounded reach of the upper Mississippi River. This 500 year flood event provided a unique opportunity to investigate fish-floodplain function because the main river channel is otherwise typically disjunct from approximately 82% of its floodplain by an extensive levee system. Fishes were sampled during three separate periods, and 42 species of adult and young-of-the-year (YOY) fishes were captured. Analysis of similarity (ANOSIM) revealed a significant and distinguishable difference between both adult and YOY assemblage structure among the three floodplain types. Analysis of variance revealed that Secchi transparency, turbidity, water velocity, and dissolved oxygen were significantly different among the floodplain types. However, only depth of gear deployment and Secchi transparency were significantly correlated with adult assemblage structure. None of these variables were significantly correlated with YOY assemblage structure. The numerically abundant families (adult and YOY catches combined) on the floodplain included Centrarchidae, Ictularidae, and Cyprinidae. Both native and non-native fishes were captured on the floodplain, and several of the numerically abundant species that were captured on the floodplain peaked in catch-per-unit-effort 1-3 years after the 1993 flood event. This suggests that some species may have used flooded terrestrial habitat for spawning, feeding, or both. The findings from our study provide much needed insight into fish-floodplain function in a temperate, channelized river system and suggest that lateral connectivity of the main river channel to less degraded reaches of its floodplain should become a management priority not only to maintain faunal biodiversity but also potentially reduce the impacts of non-native species in large river systems.

Wetlands↗
USGS2019

Observations of the spawning ecology of the imperiled Clear Lake Hitch Lavinia exilicauda chi

Migrations for the purposes of reproduction are widely documented across the animal kingdom and are particularly common in fishes and other aquatic organisms (Dingle 2014). One important migration strategy in fishes is potamodromy, which is the movement from one location to another entirely within freshwater (Morais and Daverat 2016). Thurow (2016) estimated that worldwide there are approximately 13,000 potamodromous fish species. Potamodromous species as a group are also relatively imperiled, owing to the loss or destruction of the diversity of habitats often required for successful reproduction and recruitment (Thurow 2016). The Clear Lake Hitch Lavinia exilicauda chi is an imperiled potamodromous cyprinid that is endemic to a single freshwater lake: Clear Lake, Lake County, California, USA. The species lives to approximately six years of age and attains a maximum size of approximately 350 mm fork length. As juveniles and adults, it feeds primarily on macroinvertebrates, including insects and zooplankton (Geary and Moyle 1980). Formerly highly abundant and a staple food for the Pomo tribes of the Clear Lake region, Clear Lake Hitch abundance is believed to have declined substantially from historical levels (California Department of Fish and Wildlife [CDFW] 2014). Presently, Clear Lake Hitch is listed as threatened under the California Endangered Species Act and has been petitioned for listing under the U.S. Endangered Species Act. The purpose of this paper is to document fortuitous observations of Clear Lake Hitch spawning and holding in stream habitat to generate baseline information that is needed to manage the species. The observations facilitated addressing the following questions (1) under what water temperature and flow conditions does spawning occur?, (2) what are the major habitat features where spawning takes place?, (3) what are the fundamental aspects of spawning behavior?, (4) what is the immediate fate of eggs deposited during spawning?, and (5) when not engaged in spawning, what type of stream habitat is used by Clear Lake Hitch and do they actively feed?

California↗
USGS2017

Isotopic structure of Lake Whitefish in Lake Huron: Evidence for regional and local populations based on resource use

Lake Whitefish Coregonus clupeaformis is the most commercially valuable species in Lake Huron. The fishery for this species has historically been managed based on 25 management units (17 in Canada, 8 in the USA). However, congruence between the contemporary population structure of Lake Whitefish and management units is poorly understood. We used stable isotopes of carbon (δ 13 C) and nitrogen (δ 15 N), food web markers that reflect patterns in resource use (i.e., prey, location, habitat), to assess the population structure of spawning-phase Lake Whitefish collected from 32 sites (1,474 fish) across Lake Huron. We found large isotopic variation among fish from different sites (ranges: δ 13 C = 10.2‰, δ 15 N = 5.5‰) and variable niche size and levels of overlap (standard ellipse area = 1.0–4.3‰ 2 ). Lake Huron contained spawning-phase fish from four major isotopic clusters largely defined by extensive variation in δ 13 C, and the isotopic composition of fish sampled was spatially structured both within and between lake basins. Based on cluster compositions, we identified six putative regional groups, some of which represented sites of high diversity (three to four clusters) and others with less (one to two clusters). Analysis of isotopic values from Lake Whitefish collected from summer feeding locations and baseline prey items showed similar isotopic variation and established spatial linkage between spawning-phase and summer fish. Our results show that summer feeding location contributes strongly to the isotopic structure we observed in spawning-phase fish. One of the regional groups we identified in northern Georgian Bay is highly distinct based on isotopic composition and possibly ecologically unique within Lake Huron. Our findings are congruent with several previous studies using different markers (genetics, mark–recapture), and we conclude that current management units are generally too small and numerous to reflect the population structure of Lake Whitefish in Lake Huron.

Lake Huron↗
USGS1994

Tundra swan habitat preferences during migration in North Dakota

I studied tundra swan (Cygnus columbianus columbianus) habitat preference in North Dakota during autumn migration, 1988-89. Many thousand tundra swans stop in the Prairie Pothole region during autumn migration, but swan resource use has not been quantified. I examined habitat preference in relation to an index of sago pondweed ( Potamogeton pectinatus ) presence, extent of open water, and wetland size. I compared habitat preference derived from counts of all swans to those derived from foraging swans only and cygnets only. Foraging swans preferred wetlands with sago pondweed ( P = 0.03); the number of foraging swans per wetland was >4 times higher on wetlands with sago pondweed than on wetlands without sago. In contrast, nonforaging swans did not prefer wetlands with sago pondweed ( P = 0.85) but preferred large wetlands ( P = 0.02) and those with a high proportion of contiguous open water ( P < 0.01). Thus, conclusions about habitat preference derived from counts of all swans, most of which were nonforaging, would not have revealed the importance of sago pondweed. Cygnets were more likely to be feeding than adults ( P = 0.03) and occurred proportionately more often in smaller flocks ( P = 0.04), but cygnets and adults had similar habitat preferences.

North Dakota↗
USGS1993

Resource protection for waterbirds in Chesapeake Bay

Many living resources in the Chesapeake Bay estuary have deteriorated over the past 50 years. As a result, many governmental committees, task forces, and management plans have been established. Most of the recommendations for implementing a bay cleanup focus on reducing sediments and nutrient flow into the watershed. We emphasize that habitat requirements other than water quality are necessary for the recovery of much of the bay's avian wildlife, and we use a waterbird example as illustration. Some of these needs are: (1) protection of fast-eroding islands, or creation of new ones by dredge deposition to improve nesting habitat for American black ducks(Anas rubripes), great blue herons(Ardea herodias), and other associated wading birds; (2) conservation of remaining brackish marshes, especially near riparian areas, for feeding black ducks, wading birds, and wood ducks(Aix sponsa); (3) establishment of sanctuaries in open-water, littoral zones to protect feeding and/or roosting areas for diving ducks such as canvasbacks(Aythya valisineria) and redheads(Aythya americana), and for bald eagles(Haliaeetus leucocephalus); and (4) limitation of disturbance by boaters around nesting islands and open-water feeding areas. Land (or water) protection measures for waterbirds need to include units at several different spatial scales, ranging from ?points? (e.g., a colony site) to large-area resources (e.g., a marsh or tributary for feeding). Planning to conserve large areas of both land and water can be achieved following a biosphere reserve model. Existing interagency committees in the Chesapeake Bay Program could be more effective in developing such a model for wildlife and fisheries resources.

Chesapeake Bay↗
USGS2007

Biological conditions in streams of Johnson County, Kansas, and nearby Missouri, 2003 and 2004

Johnson County is one of the fastest growing and most populated counties in Kansas. Urban development affects streams by altering stream hydrology, geomorphology, water chemistry, and habitat, which then can lead to adverse effects on fish and macroinvertebrate communities. In addition, increasing sources of contaminants in urbanizing streams results in public-health concerns associated with exposure to and consumption of contaminated water. Biological assessments, or surveys of organisms living in aquatic environments, are crucial components of water-quality programs because they provide an indication of how well water bodies support aquatic life. This fact sheet describes current biological conditions of Johnson County streams and characterizes stream biology relative to urban development. Biological conditions were evaluated by collecting macroinvertebrate samples from 15 stream sites in Johnson County, Kansas, in 2003 and 2004 (fig. 1). Data from seven additional sites, collected as part of a separate study with similar objectives in Kansas and Missouri (Wilkison and others, 2005), were evaluated to provide a more comprehensive assessment of watersheds that cross State boundaries. Land-use and water- and streambed-sediment-quality data also were used to evaluate factors that may affect macroinvertebrate communities. Metrics are indices used to measure, or evaluate, macroinvertebrate response to various factors such as human disturbance. Multimetric scores, which integrated 10 different metrics that measure various aspects of macroinvertebrate communities, including organism diversity, composition, tolerance, and feeding characteristics, were used to evaluate and compare biological health of Johnson County streams. This information is useful to city and county officials for defining current biological conditions, evaluating conditions relative to State biological criteria, evaluating effects of urbanization, developing effective water-quality management plans, and documenting changes in biological conditions and water quality.

Kansas, Missouri↗
USGS1992

Application of a computer simulation model to migrating white-fronted geese in the Klamath Basin

The Pacific greater white-fronted goose ( Anser albifrons ) population has declined precipitously over the past 20 years. Loss of wetland habitat in California wintering areas has had a significant effect on the population, so recovery of the population may depend on innovative management of the few remaining wetlands. A computer simulation model, REFMOD, was applied to greater white-fronted geese in the Klamath Basin, northern California, to investigate the importance of food availability and hunting disturbance to migrating and wintering populations. Time spent flying and feeding was simulated during fall and early winter, and the resulting energy expenditure was compared with energy consumed to calculate an overall energy balance. This energy balance and the ease with which waterfowl acquired needed food affected emigration rate, and thus, the waterfowl population level was directly tied to availability and distribution of food. The model validly described distances moved by geese from their Tule Lake Refuge roosting site (core) to feeding sites within the surrounding Klamath Basin arena, and exhibited a capability to simulate observed time spent feeding. Based on 25 stochastic simulations, greater white-fronted goose population dynamics were validly simulated over the fall and early-winter (P>0.8). When food was removed from the Tule Lake Refuge, simulated geese had to fly farther (P<0.0001) to find food, hastening emigration and resulting in a decline (P<0.05) in use of the Klamath Basin by geese. Although barley is normally abundant in the basin and is extensively used by geese, simulated elimination of barley in the arena did not cause a reduction in goose numbers (P>0.05). The elimination did cause an increase in the distance traveled to feed (P<0.05), but the availability of other foods in the basin (e.g., potatoes) was evidently sufficient to support the population. The elimination of hunting in the Klamath Basin, and the related decrease in disturbance of feeding birds, had little effect (P>0.05) on the distance traveled to feed or on goose numbers. A 10-fold increase in disturbance hastened emigration and reduced population levels (P<0.0001) during the season by about 30%; a 100-fold increase in disturbance reduced population levels (P<0.0001) by 85%. When goose immigration was increased to simulate an average peak population of approximately 500 000 geese, population levels remained high throughout the fall, indicating the Klamath Basin can sustain a population much larger than currently exists. This suggests food availability and disturbance levels in the Klamath Basin are not responsible for observed population declines during the last 2 decades. REFMOD can easily be used to evaluate the effects of other scenarios related to hunting regimes and food distribution and availability.

Book chapter↗
USGS1996

Ecology, Conservation, and Management of Colonial Waterbirds in the Mediterranean Region

(excerpt from Forword) The Mediterranean Symposium, part of the annual conference of The Colonial Waterbird Society in October 1993 in Arles, France, was the successful culmination of ideas shared among leading European waterbird and wetland scientists... Both invited and contributed papers focused on two areas - breeding biology (especially of threatened or little known species), and feeding ecology. Eighteen oral presentations were given and 27 poster papers were developed.

Colonial Waterbirds↗
USGS2010

Use and environmental occurrence of pharmaceuticals in freestall dairy farms with manured forage fields

Environmental releases of antibiotics from concentrated animal feeding operations (CAFOs) are of increasing regulatory concern. This study investigates the use and occurrence of antibiotics in dairy CAFOs and their potential transport into first-encountered groundwater. On two dairies we conducted four seasonal sampling campaigns, each across 13 animal production and waste management systems and associated environmental pathways: application to animals, excretion to surfaces, manure collection systems, soils, and shallow groundwater. Concentrations of antibiotics were determined using on line solid phase extraction (OLSPE) and liquid chromatography-tandem mass spectrometry (LC/MS/MS) with electrospray ionization (ESI) for water samples, and accelerated solvent extraction (ASE) LC/MS/MS with ESI for solid samples. A variety of antibiotics were applied at both farms leading to antibiotics excretion of several hundred grams per farm per day. Sulfonamides, tetracyclines, and their epimers/isomers, and lincomycin were most frequently detected. Yet, despite decades of use, antibiotic occurrence appeared constrained to within farm boundaries. The most frequent antibiotic detections were associated with lagoons, hospital pens, and calf hutches. When detected below ground, tetracyclines were mainly found in soils, whereas sulfonamides were found in shallow groundwater reflecting key differences in their physicochemical properties. In manure lagoons, 10 compounds were detected including tetracyclines and trimethoprim. Of these 10, sulfadimethoxine, sulfamethazine, and lincomycin were found in shallow groundwater directly downgradient from the lagoons. Antibiotics were sporadically detected in field surface samples on fields with manure applications, but not in underlying sandy soils. Sulfadimethoxine and sulfamethazine were detected in shallow groundwater near field flood irrigation gates, but at highly attenuated levels.

Environmental Science & Technology↗
USGS2018

Post‐release predation mortality of age‐0 hatchery‐reared Chinook salmon from non‐native smallmouth bass in the Snake River

Release of age‐0 hatchery‐reared fall Chinook salmon, Oncorhynchus tshawytscha (Walbaum), in the Snake River resulted in up to 30‐fold increases in salmon consumption by non‐native smallmouth bass, Micropterus dolomieu Lacepѐde. In an upper river reach, smallmouth bass fed intensively during a release in May, but Chinook salmon consumption returned to pre‐release levels within 1–2 days as hatchery‐reared fish quickly emigrated downstream. The predation response during a June release located farther downstream was dissimilar. Chinook salmon consumption increased to a lesser extent (11‐fold), lasted several days (~4) and no changes in feeding intensity were evident. Estimated numbers of age‐0 hatchery‐reared Chinook salmon lost to short‐term predation varied by year and study reach and ranged from 12,007 (6.03% of those released) to 210,580 (14.6% of those released) fish. Short‐term, intense feeding by smallmouth bass can contribute significantly to mortality of hatchery‐reared fish and should be considered when supplementing populations with hatchery juveniles.

Idaho, Washington↗
USGS2014

Mercury in fishes from 21 national parks in the Western United States: inter- and intra-park variation in concentrations and ecological risk

Mercury (Hg) is a global contaminant and human activities have increased atmospheric Hg concentrations 3- to 5-fold during the past 150 years. This increased release into the atmosphere has resulted in elevated loadings to aquatic habitats where biogeochemical processes promote the microbial conversion of inorganic Hg to methylmercury, the bioavailable form of Hg. The physicochemical properties of Hg and its complex environmental cycle have resulted in some of the most remote and protected areas of the world becoming contaminated with Hg concentrations that threaten ecosystem and human health. The national park network in the United States is comprised of some of the most pristine and sensitive wilderness in North America. There is concern that via global distribution, Hg contamination could threaten the ecological integrity of aquatic communities in the parks and the wildlife that depends on them. In this study, we examined Hg concentrations in non-migratory freshwater fish in 86 sites across 21 national parks in the Western United States. We report Hg concentrations of more than 1,400 fish collected in waters extending over a 4,000 kilometer distance, from Alaska to the arid Southwest. Across all parks, sites, and species, fish total Hg (THg) concentrations ranged from 9.9 to 1,109 nanograms per gram wet weight (ng/g ww) with a mean of 77.7 ng/g ww. We found substantial variation in fish THg concentrations among and within parks, suggesting that patterns of Hg risk are driven by processes occurring at a combination of scales. Additionally, variation (up to 20-fold) in site-specific fish THg concentrations within individual parks suggests that more intensive sampling in some parks will be required to effectively characterize Hg contamination in western national parks. Across all fish sampled, only 5 percent had THg concentrations exceeding a benchmark (200 ng/g ww) associated with toxic responses within the fish themselves. However, Hg concentrations in 35 percent of fish sampled were above a benchmark for risk to highly sensitive avian consumers (90 ng/g ww), and THg concentrations in 68 percent of fish sampled were above exposure levels recommended by the Great Lakes Advisory Group (50 ng/g ww) for unlimited consumption by humans. Of the fish assessed for risk to human consumers (that is, species that are large enough to be consumed by recreational or subsistence anglers), only one individual fish from Yosemite National Park had a muscle Hg concentration exceeding the benchmark (950 ng/g ww) at which no human consumption is advised. Zion, Capital Reef, Wrangell-St. Elias, and Lake Clark National Parks all contained sites in which most fish exceeded benchmarks for the protection of human and wildlife health. This finding is particularly concerning in Zion and Capitol Reef National Parks because the fish from these parks were speckled dace, a small, invertebrate-feeding species, yet their Hg concentrations were as high or higher than those in the largest, long-lived predatory species, such as lake trout. Future targeted research and monitoring across park habitats would help identify patterns of Hg distribution across the landscape and facilitate management decisions aimed at reducing the ecological risk posed by Hg contamination in sensitive ecosystems protected by the National Park Service.

Alaska;Arizona;California;Colorado;Idaho;Montana;N↗
USGS1993

A comparison of water quality criteria for the Great Lakes based on human and wildlife health

Water quality criteria (WQC) can be derived in several ways. The usual techniques involve hazard and risk assessment procedures. For non-persistent, non-biomagnified compounds and elements, WQC are experimentally derived from their acute and chronic toxicity to aquatic organisms. For those persistent chlorinated hydrocarbons (PCHs) that are bioaccumulated and biomagnified, these traditional techniques have not been effective, partly because effects higher in the food web were not considered. Polychlorinated biphenyls (PCBs) are the bioaccumulative synthetic chemicals of primary toxicological significance to the Great Lakes biota which have caused widespread injury to wildlife. In the Laurentian Great Lakes, the primary emphasis of hazard assessments has been on the potential for adverse effects in humans who eat fish. The primary regulatory endpoint of traditional hazard and risk assessments underlying current WQC are the probabilities of additional cancers occurring in the human population. The analysis presented here indicates that this is not adequate to restore sensitive wildlife species that are highly exposed to PCBs, especially those that have suffered serious population declines. Because WQC are legal instruments, the methods of deriving WQC have large implications for remediation, litigation, and damage assessments. Here WQC are derived for six species based on the responses of wildlife in the field or produced by feeding fish to surrogate species, rather than projecting a potential of increased cancer rates in humans. If the most sensitive wildlife species are restored and protected for very sensitive reproductive endpoints, then all components of the ecosystem, including human health, should be more adequately protected. The management of Great Lakes wildlife requires an understanding of the injury and causal relationships to persistent toxic substances.

Journal of Great Lakes Research↗
USGS2023

Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding

Diet analysis is a vital tool for understanding trophic interactions and is frequently used to inform conservation and management. Molecular approaches can identify diet items that are impossible to distinguish using more traditional visual-based methods. Yet, our understanding of how different variables, such as predator species or prey ration size, influence molecular diet analysis is still incomplete. Here, we conducted a large feeding trial to assess the impact that ration size, predator species, and temperature had on digestion rates estimated with visual identification, qPCR, and metabarcoding. Our trial was conducted by feeding two rations of Chinook salmon ( Oncorhynchus tshawytscha ) to two piscivorous fish species (largemouth bass [ Micropterus salmoides ] and channel catfish [ Ictalurus punctatus ]) held at two different temperatures (15.5 and 18.5°C) and sacrificed at regular intervals up to 120 h from the time of ingestion to quantify the prey contents remaining in the digestive tract. We found that ration size, temperature, and predator species all influenced digestion rate, with some indication that ration size had the largest influence. DNA-based analyses were able to identify salmon smolt prey in predator gut samples for much longer than visual analysis (~12 h for visual analysis vs. ~72 h for molecular analyses). Our study provides evidence that modelling the persistence of prey DNA in predator guts for molecular diet analyses may be feasible using a small set of controlling variables for many fish systems.

Molecular Ecology Resources↗
USGS2007

Diet niches of major forage fish in Lake Michigan

A large complex of coregonine species historically dominated the fish community of Lake Michigan. The current species complex is simplified with one remaining coregonine, bloater (Coregonus hoyi), deepwater sculpin (Myoxocephalus thompsoni), slimy sculpin (Cottus cognatus), and two dominant invaders, alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax). To better understand the diet relationships of the major offshore forage fishes now in Lake Michigan, diets of bloater, alewife, rainbow smelt, deepwater sculpin, and slimy sculpin were compared. The three sites, chosen to represent northern, central, and southern components of the lake, were sampled during spring, summer, and fall in 1994, and spring and fall in 1995. Forage fishes had diverse and variable diets, with niches differentiated by prey type or location. Diporeia hoyi, Mysis relicta, and zooplankton were the major diet items. The index of relative importance showed benthic (slimy and deepwater sculpins) and pelagic (alewife, rainbow smelt) feeding strategies with opportunistic bloaters incorporating both feeding strategies. Highest diet overlaps were between species of sculpin, and between large and small bloaters; both groups partitioned food by size. Though competition for food may be minimized by spatial segregation of potential competitors, the forage fish in Lake Michigan apparently partition food resources. Fishery management models incorporating food habits of pelagic forage fish would need to take into account diet variation associated with location and season. ?? 2007 E. Schweizerbart'sche Verlagsbuchhandlung.

Conference Paper↗
USGS2009

Biofuels, water resources and climate change: Solving the sustainability puzzle

Nebraska is now the second-largest producer of corn ethanol in the U.S. This is largely because of the state’s comparative advantages. For one, the state’s water resources enable a huge capacity for irrigation – Nebraska ranks second in irrigated crop acres, behind California. Nebraska is the third-largest corn producer in the U.S., with 75 percent of the crop irrigated. The state also produces nearly 5 million acres of soybeans, half of them irrigated. Both provide a large, dependable supply of feedstock for production of ethanol and other biofuels. Nebraska’s cattle feeding industry, with more than 4.5 million head on feed, utilizes ethanol byproducts such as distillers grains and enables biorefinery systems to attain high energy efficiency and profitability. This powerful nexus of agriculture, water and biofuels is highly vulnerable to changes in climate. The panelists represented a cross-section of these interests, including a manager of the state’s longest-operating ethanol plant, a farmer with extensive knowledge of ethanol production, the administrator of the state ethanol board and a project manager from a federal agency charged with tracking land use and its ties to biofuel production and climate change.

Nebraska↗