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At least 199 records · Page 11Linked to original sources

Using tracer variance decay to quantify variability of salinity mixing in the Hudson River Estuary

The salinity structure in an estuary is controlled by time‐dependent mixing processes. However, the locations and temporal variability of where significant mixing occurs is not well‐understood. Here we utilize a tracer variance approach to demonstrate the spatial and temporal structure of salinity mixing in the Hudson River Estuary. We run a 4‐month hydrodynamic simulation of the tides, currents, and salinity that captures the spring‐neap tidal variability as well as wind‐driven and freshwater flow events. On a spring‐neap time scale, salinity variance dissipation (mixing) occurs predominantly during the transition from neap to spring tides. On a tidal time scale, 60% of the salinity variance dissipation occurs during ebb tides and 40% during flood tides. Spatially, mixing during ebbs occurs primarily where lateral bottom salinity fronts intersect the bed at the transition from the main channel to adjacent shoals. During ebbs, these lateral fronts form seaward of constrictions located at multiple locations along the estuary. During floods, mixing is generated by a shear layer elevated in the water column at the top of the mixed bottom boundary layer, where variations in the along channel density gradients locally enhance the baroclinic pressure gradient leading to stronger vertical shear and more mixing. For both ebb and flood, the mixing occurs at the location of overlap of strong vertical stratification and eddy diffusivity, not at the maximum of either of those quantities. This understanding lends a new insight to the spatial and time dependence of the estuarine salinity structure.

Hudson River

Increased utilization of storm surge barriers: A research agenda on estuary impacts

Rising coastal flood risk and recent disasters are driving interest in the construction of gated storm surge barriers worldwide, with current studies recommending barriers for at least 11 estuaries in the United States alone. Surge barriers partially block estuary-ocean exchange with infrastructure across an estuary or its inlet and include gated areas that are closed only during flood events. They can alter the stratification and salt intrusion, change sedimentary systems, and curtail animal migration and ecosystem connectivity, with impacts growing larger with increasing gate closures. Existing barriers are being used with increasing frequency due to sea level rise. New barrier proposals typically come with maximum closure frequency recommendations, yet the future adherence to them is uncertain. Given that the broader environmental effects and coupled-human dynamics of surge barriers are not well-understood, we present an interdisciplinary research agenda for this increasingly prevalent modification to our coastal zone.

Earth's Future

Assessing toxicant effects in a complex estuary--A case study of effects of silver on reproduction in the bivalve, Potamocurbula amurensis, in San Francisco Bay

Contaminant exposures in natural systems can be highly variable. This variability is superimposed upon cyclic variability in biological processes. Together, these factors can confound determination of contaminant effects. Long term, multidisciplined studies with high frequency sampling can be effective in overcoming such obstacles. While studying trace metal contamination in the tissues of the clam, Potamocorbula amurensis , in the northern reach of San Francisco Bay, an episode of high Ag concentrations was identified (maximum of 5.5 µg g −1 ) at two mid-estuary sites. High concentrations were not seen in clams up-estuary (maximum of 1.92 µg g −1 ) from these sites and were reduced down-estuary (maximum of 2.67 µg g −1 ). Silver is not common naturally in the environment, so its elevated presence is usually indicative of anthropogenic influences such as municipal and industrial discharge. Monthly sampling of reproductive status of clams characterized the reproductive cycle and differences in the patterns of reproductive activity that corresponded to changes in Ag tissue concentrations. The proportion of reproductive clams was less than 60% during periods when tissue concentrations were high (generally >2 µg g −1 ). When tissue concentrations of Ag decreased (≤1 µg g −1 ), the proportion of reproductive clams was 80 to 100%. A comparison between the annual proportion of reproductive clams and annual Ag tissue concentrations showed a significant negative correlation. No other measured environmental variables were correlated with reproductive impairment. The weight-of-evidence approach strongly supports a cause and effect relationship between Ag contamination and reduced reproductive activity in P. amurensis .

California

Nitrogen loads to estuaries from waste water plumes: Modeling and isotopic approaches

We developed, and applied in two sites, novel methods to measure ground water-borne nitrogen loads to receiving estuaries from plumes resulting from land disposal of waste water treatment plant (WWTP) effluent. In addition, we quantified nitrogen losses from WWTP effluent during transport through watersheds. WWTP load to receiving water was estimated as the difference between total measured ground water-transported nitrogen load and modeled load from major nitrogen sources other than the WWTP. To test estimated WWTP loads, we applied two additional methods. First, we quantified total annual waste water nitrogen load from watersheds based on nitrogen stable isotopic signatures of primary producers in receiving water. Second, we used published data on ground water nitrogen concentrations in an array of wells to estimate dimensions of the plume and quantify the annual mass of nitrogen transported within the plume. Loss of nitrogen during transport through the watershed was estimated as the difference between the annual mass of nitrogen applied to watersheds as treatment plant effluent and the estimated nitrogen load reaching receiving water. In one plume, we corroborated our estimated nitrogen loss in watersheds using data from multiple-level sampling wells to calculate the loss of nitrogen relative to a conservative tracer. The results suggest that nitrogen from the plumes is discharging to the estuaries but that substantial nitrogen loss occurs during transport through the watersheds. The measured vs. modeled and stable isotopic approaches, in comparison to the plume mapping approach, may more reliably quantify ground water-transported WWTP loads to estuaries. Copyright ?? 2005 National Ground Water Association.

Ground Water

Home range and movements of American alligators ( Alligator mississippiensis ) in an estuary habitat

Background Understanding movement patterns of free-ranging top predators throughout heterogeneous habitat is important for gaining insight into trophic interactions. We tracked the movements of five adult American alligators to delineate their estuarine habitat use and determine drivers of their activity patterns in a seasonally-fluctuating environment. We also compared VHF- and satellite-tracks of one of the alligators to examine tradeoffs in data quality and quantity. Results All tracked alligators showed high site fidelity in the estuary, but estimated home range size and core-use areas were highly variable. Two alligators were relatively sedentary and remained in the upper stream zone. One alligator traveled to a transition zone between freshwater marsh and estuary habitat, but primarily remained in the upstream area. Two alligators traveled to the downstream zone into saline conditions and showed high salinity tolerance. Overall movement rates were highly influenced by salinity, temperature, and season. Both satellite and VHF radio telemetries resulted in similar home range, core-use area, and activity centers. Conclusions This study reveals consistent use of estuary habitat by American alligators. The alligators showed variations in their movement pattern and seasonal habitat, with movement attributable to environmental factors. Although satellite-derived locations were more dispersed compared to locations collected using VHF radio-tags, data collected from VHF tracking omitted some habitat used for a short period of time, indicating the effectiveness of satellite telemetry to continuously track animals for ecosystem-scale studies.

Florida

Coupled effects of vertical mixing and benthic grazing on phytoplankton populations in shallow, turbid estuaries

Coastal ocean waters tend to have very different patterns of phytoplankton biomass variability from the open ocean, and the connections between physical variability and phytoplankton bloom dynamics are less well established for these shallow systems. Predictions of biological responses to physical variability in these environments is inherently difficult because the recurrent seasonal patterns of mixing are complicated by aperiodic fluctuations in river discharge and the high-frequency components of tidal variability. We might expect, then, less predictable and more complex bloom dynamics in these shallow coastal systems compared with the open ocean. Given this complex and dynamic physical environment, can we develop a quantitative framework to define the physical regimes necessary for bloom inception, and can we identify the important mechanisms of physical-biological coupling that lead to the initiation and termination of blooms in estuaries and shallow coastal waters? Numerical modeling provides one approach to address these questions. Here we present results of simulation experiments with a refined version of Cloern's (1991) model in which mixing processes are treated more realistically to reflect the dynamic nature of turbulence generation in estuaries. We investigated several simple models for the turbulent mixing coefficient. We found that the addition of diurnal tidal variation to Cloern's model greatly reduces biomass growth indicating that variations of mixing on the time scale of hours are crucial. Furthermore, we found that for conditions representative of South San Francisco Bay, numerical simulations only allowed for bloom development when the water column was stratified and when minimal mixing was prescribed in the upper layer. Stratification, however, itself is not sufficient to ensure that a bloom will develop: minimal wind stirring is a further prerequisite to bloom development in shallow turbid estuaries with abundant populations of benthic suspension feeders.

Journal of Marine Research

Dietary segregation of pelagic and littoral fish assemblages in a highly modified tidal freshwater estuary

Estuarine food webs are highly variable and complex, making identification of their trophic pathways difficult. Energy for the food web of the San Francisco Estuary is thought to be based largely on in situ phytoplankton production, but little attention has been paid to littoral habitats, where other energy sources may be important. We analyzed the stomach contents of over 960 juvenile fishes and the stable carbon and nitrogen isotope ratios of these fishes and their potential food resources in pelagic and littoral habitats from the tidal freshwater area of the estuary. The mixing model IsoSource was used to examine energy sources important to consumers. Our results show evidence of two predominant food web pathways. Pelagic fishes and some littoral fishes showed strong dependence on a zooplankton–phytoplankton trophic pathway. However, the majority of fishes in littoral habitats had diets and carbon isotope ratios consistent with energy arising from submerged aquatic vegetation and epiphytic macroalgae. IsoSource revealed that the overall majority of nutrition of littoral fishes originated from consumption of grazer amphipods. Examining both stable isotopes and stomach contents allowed us to identify a food web with contributions to resident fishes that had been previously underestimated in the estuary. This study provides insight to how estuarine food webs have changed over the last few decades and highlights why the functions of habitats must be understood for effective restoration planning.

Marine and Coastal Fisheries: Dynamics, Management

Factors affecting chick provisioning by Caspian Terns nesting in the Columbia River estuary

We investigated factors affecting chick provisioning by radio-tagged Caspian Terns (Sterna caspia) nesting in a large colony on East Sand Island in the Columbia River estuary during 2001. Caspian Tern predation on juvenile salmonids (Oncorhynchus spp.) in the estuary prompted resource managers to relocate ca. 9,000 pairs of terns nesting on Rice Island (river km 34) to East Sand Island (river km 8), where terns were expected to consume fewer salmonids in favor of marine forage fishes. This study investigated factors influencing foraging success, diet composition, and overall reproductive success at the managed Caspian Tern colony. Our results indicated that daytime colony attendance by nesting terns averaged 64% and decreased throughout the chick-rearing period, while duration of foraging trips averaged 47 min and increased during the same period; these seasonal changes were more strongly related to date than chick age. Average meal delivery rates to 2-chick broods (0.88 meals h-1) were 2.6 times greater than to 1-chick broods (0.33 meals h-1). Parents delivered more juvenile salmonids to chicks during ebb tides than flood tides, but meal delivery rates to the nest remained constant, suggesting diet composition tracks relative availability of prey species. Foraging trips resulting in delivery of juvenile salmonids averaged 68% longer than foraging trips for schooling marine forage fishes, indicating higher availability of marine prey near the colony. High availability of marine forage fish in the Columbia River estuary during 2001 was apparently responsible for high colony attendance, short foraging trips, high chick meal delivery rates, and high nesting success of Caspian Terns on East Sand Island.

Waterbirds

Foraging ecology of Caspian Terns in the Columbia River Estuary, USA

Comparisons were made of the foraging ecology of Caspian Terns ( Sterna caspia ) nesting on two islands in the Columbia River estuary using radio telemetry and observations of prey fed to chicks and mates at each colony. Early in the chick-rearing period, radio-tagged terns nesting at Rice Island (river km 34) foraged mostly in the freshwater zone of the estuary close to the colony, while terns nesting on East Sand Island (river km 8) foraged in the marine or estuarine mixing zones close to that colony. Late in the chick-rearing period, Rice Island terns moved more of their foraging to the two zones lower in the estuary, while East Sand Island terns continued to forage in these areas. Tern diets at each colony corresponded to the primary foraging zone (freshwater vs. marine/mixing) of radio-tagged individuals: Early in chick-rearing, Rice Island terns relied heavily on juvenile salmonids ( Oncorhynchus spp., 71% of identified prey), but this declined late in chick-rearing (46%). East Sand Island terns relied less on salmonids (42% and 16%, early and late in chick-rearing), and instead utilized marine fishes such as Anchovy ( Engraulis mordax ) and Herring ( Clupea pallasi ). Throughout chick-rearing, Rice Island terns foraged farther from their colony (median distance: 12.3 km during early chick-rearing and 16.9 km during late chick-rearing) than did East Sand Island terns (9.6 and 7.7 km, respectively). The study leads to the conclusion that Caspian Terns are generalist foragers and make use of the most proximate available forage fish resources when raising young.

Oregon, Washington

Analysis of pelagic species decline in the upper San Francisco Estuary using multivariate autoregressive modeling (MAR)

Four species of pelagic fish of particular management concern in the upper San Francisco Estuary, California, USA, have declined precipitously since ca. 2002: delta smelt ( Hypomesus transpacificus ), longfin smelt ( Spirinchus thaleichthys ), striped bass ( Morone saxatilis ), and threadfin shad ( Dorosoma petenense ). The estuary has been monitored since the late 1960s with extensive collection of data on the fishes, their pelagic prey, phytoplankton biomass, invasive species, and physical factors. We used multivariate autoregressive (MAR) modeling to discern the main factors responsible for the declines. An expert-elicited model was built to describe the system. Fifty-four relationships were built into the model, only one of which was of uncertain direction a priori. Twenty-eight of the proposed relationships were strongly supported by or consistent with the data, while 26 were close to zero (not supported by the data but not contrary to expectations). The position of the 2‰ isohaline (a measure of the physical response of the estuary to freshwater flow) and increased water clarity over the period of analyses were two factors affecting multiple declining taxa (including fishes and the fishes' main zooplankton prey). Our results were relatively robust with respect to the form of stock–recruitment model used and to inclusion of subsidiary covariates but may be enhanced by using detailed state–space models that describe more fully the life-history dynamics of the declining species.

California

Environmental contaminants in bald eagles in the Columbia River Estuary

Eggs, blood, and carcasses of bald eagles ( Haliaeetus leucocephalus ) and fish were collected and breeding success of eagles was monitored in the Columbia River estuary, 1980-87, to determine if contaminants were having an effect on productivity. High levels of dichloro diphenyl dichloroethylene (DDE), polychlorinated biphenyls (PCB's), and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) were found in eggs, blood from adults, and 2 eagle carcasses. Detectable levels of DDE and PCB's were found in blood of nestlings indicating they were exposed to these contaminants early in life. Increasing concentrations of DDE and PCB's with age also indicated accumulation of these contaminants. Adult eagles also had higher levels of mercury (Hg) in blood than subadults or young indicating accumulation with age. The high levels of DDE and PCB's were associated with eggshell thinning (x̄ = 10%) and with productivity (x̄ = 0.56 young/occupied site) that was lower than that of healthy populations (i.e., ≥1.00 young/occupied site). DDE and PCB's had a deleterious effect on reproduction of bald eagles in the estuary. The role dioxins play in eagle reproduction remains unclear, but concentrations in eagle eggs were similar to those in laboratory studies on other species where dioxins adversely affected hatchability of eggs. Probable sources of these contaminants include dredged river sediments and hydroelectric dams, and the proper management of each may reduce the amount of contaminants released into the Columbia River estuary.

Oregon, Washington

Historical changes in the Columbia River estuary based on sediment cores: feasibility studies

The importance of the Columbia River estuary to salmon, other fishes, migratory birds, and other species is fairly well established. Relatively little is known, however, about long-term, historic variations in biological processes and conditions within the estuary. For example, have conditions varied greatly with climatic regime shifts and how has dam construction on the Columbia River influenced biological communities over time? We conducted a feasibility study to see if sediment cores from the estuary could be aged and whether biological or contaminant indicators could be identified. Such information could be useful in understanding long-term environmental variation and in restoration studies.

Oregon, Washington

Nutrient load summaries for major lakes and estuaries of the Eastern United States, 2002

Nutrient enrichment of lakes and estuaries across the Nation is widespread. Nutrient enrichment can stimulate excessive plant and algal growth and cause a number of undesirable effects that impair aquatic life and recreational activities and can also result in economic effects. Understanding the amount of nutrients entering lakes and estuaries, the physical characteristics affecting the nutrient processing within these receiving waterbodies, and the natural and manmade sources of nutrients is fundamental to the development of effective nutrient reduction strategies. To improve this understanding, sources and stream transport of nutrients to 255 major lakes and 64 estuaries in the Eastern United States were estimated using Spatially Referenced Regression on Watershed attributes (SPARROW) nutrient models.

Eastern United States

Estuaries of the Greater Everglades Ecosystem: Laboratories of Long-term Change

Restoring the greater Everglades ecosystem of south Florida is arguably the largest ecosystem restoration effort to date. A critical goal is to return more natural patterns of flow through south Florida wetlands and into the estuaries, but development of realistic targets requires acknowledgement that ecosystems are constantly evolving and changing in response to a variety of natural and human-driven stressors. Examination of ecosystems over long periods of time requires analysis of sedimentary records, such as those deposited in the wetlands and estuaries of south Florida. As sediment accumulates, it preserves information about the animals and plants that lived in the environment and the physical, chemical, and climatic conditions present. One of the methods used to interpret this information is paleoecology-the study of the ecology of previously living organisms. Paleoecologic investigations of south Florida estuaries provide quantitative data on historical variability of salinity and trends that may be applied to statistical models to estimate historical freshwater flow. These data provide a unique context to estimate future ecosystem response to changes related to restoration activities and predicted changes in sea level and temperature, thus increasing the likelihood of successful and sustainable ecosystem restoration.

Fact Sheet

Geophysical mapping of oyster habitats in a shallow estuary: Apalachicola Bay, Florida

This report presents high-resolution geophysical data, interpretive maps, and a preliminary discussion about the oyster habitat and estuary-floor geology within Apalachicola Bay, Florida (fig. 1). During two research cruises, conducted in 2005 and 2006, approximately 230 km² of the bay floor were surveyed using interferometric-bathymetry, sidescan-sonar, and chirp seismic-reflection techniques. The research was conducted as part of a cooperative program between the U.S. Geological Survey (USGS), the National Oceanic and Atmospheric Administration Coastal Services Center (CSC), and the Apalachicola Bay National Estuarine Research Reserve. The Apalachicola Bay National Estuarine Research Reserve was established in 1979 to provide opportunities for long-term monitoring and research to provide a basis for more informed coastal management decisions for this estuary. Apalachicola Bay is the largest oyster fishery in Florida (Whitfield and Beaumariage, 1977), and the primary objective of this program is to develop a suite of maps that define oyster habitat distribution and estuary-floor geology within the bay. The resulting maps will assist in effective management of oyster resources and provide a reference geologic framework for future scientific and applied research.

Florida

Pre-Restoration Habitat Use by Chinook Salmon in the Nisqually Estuary Using Otolith Analysis: An Additional Year

The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the Federal Endangered Species Act (ESA). Preservation and extensive restoration of the Nisqually delta ecosystem is currently taking place to assist in recovery of the stock as juvenile Fall Chinook salmon are dependent upon the estuary. A pre-restoration baseline that includes characterization of life history types, estuary residence times, growth rates, and habitat use is needed to evaluate the potential response of hatchery and natural origin Chinook salmon to restoration efforts and determine restoration success. Otolith analysis was selected to examine Chinook salmon life history, growth, and residence in the Nisqually Estuary. Previously funded work on wild samples collected in 2004 established the growth rate and length of residence associated with various habitats. The purpose of the current study is to build on the previous work by incorporating otolith microstructure analysis from 2005 (second sampling year), to verify findings from 2004, and to evaluate between-year variation in otolith microstructure. Our results from this second year of analysis indicated no inter-annual variation in the appearance of the tidal delta check (TDCK) and delta-flats check (DFCK). However, a new life history type (fry migrant) was observed on samples collected in 2005. Fish caught in the tidal delta regardless of capture date spent an average of 17 days in the tidal delta. There was a corresponding increase in growth rate as the fish migrated from freshwater (FW) to tidal delta to nearshore (NS) habitats. Fish grew 33 percent faster in the tidal delta than in FW habitat and slightly faster (14 percent) in the delta flats (DF) habitat compared to the tidal delta.

Open-File Report

Continuous tidal streamflow, water level, and specific conductance data for Union Creek and the Little Back, Middle, and Front Rivers, Savannah River Estuary, November 2008 to March 2009

In the Water Resource Development Act of 1999, the U.S. Congress authorized the deepening of the Savannah Harbor. Additional studies were then identified by the Georgia Ports Authority and other local and regional stakeholders to determine and fully describe the potential environmental effects of deepening the channel. One need that was identified was the validation of a three-dimensional hydrodynamic model developed to evaluate mitigation scenarios for a potential harbor deepening and the effects on the Savannah River estuary. The streamflow in the estuary is very complex due to reversing tidal flows, interconnections of streams and tidal creeks, and the daily flooding and draining of the marshes. The model was calibrated using very limited streamflow data and no continuous streamflow measurements. To better characterize the streamflow dynamics and mass transport of the estuary, two index-velocity sites were instrumented with continuous acoustic velocity, water level, and specific conductance sensors on the Little Back and Middle Rivers for the 5-month period of November 2008 through March 2009. During the same period, a third acoustic velocity meter was installed on the Front River just downstream from U.S. Geological Survey streamgaging station 02198920 (Savannah River at GA 25, at Port Wentworth, Georgia) where water level and specific conductance data were being collected. A fourth index-velocity site was instrumented with continuous acoustic velocity, water level, and specific conductance sensors on Union Creek for a 2-month period starting in November 2008. In addition to monitoring the tidal cycles, streamflow measurements were made at the four index-velocity sites to develop ratings to compute continuous discharge for each site. The maximum flood (incoming) and ebb (outgoing) tides measured on Little Back River were –4,570 and 7,990 cubic feet per second, respectively. On Middle River, the maximum flood and ebb tides measured were –9,630 and 13,600 cubic feet per second, respectively. On Front River, the maximum flood and ebb tides were –34,500 and 43,700 cubic feet per second, respectively; and on Union Creek, the maximum flood and ebb tides were –2,390 and 4,610 cubic feet per second, respectively. During the 5-month instrumentation deployment, computed tidal streamflows on Little Back River ranged from –7,820 to 9,600 cubic feet per second for the flood and ebb tides, respectively. On Middle River, the computed tidal streamflows ranged from –17,500 to 22,500 cubic feet per second for the flood and ebb tides, respectively. The computed tidal streamflows on Front River ranged from –78,900 to 87,200 cubic feet per second, and from –3,850 to 6,130 cubic feet per second on Union Creek for the flood and ebb tides, respectively. The streamgages on the Little Back, Middle, and Front Rivers have continued in operation following the initial 5-month deployment.

Georgia, South Carolina

Changes in nitrogen loading to the Northeast Creek Estuary, Bar Harbor, Maine, 2000 to 2010

Since 1999, the U.S. Geological Survey and the National Park Service have been monitoring land use and nitrogen loading in a 26.3-square-kilometer (10-square-mile) estuarine watershed at Acadia National Park, Mount Desert Island, Maine. The initial study linking land use and nitrogen loads entering the Northeast Creek estuary was completed in 2000, and findings were used to develop simulations of nitrogen loading to the estuary, thereby helping to inform local land-use planning decisions. At that time, the amount of nitrogen entering the Northeast Creek estuary was relatively small, and no evidence of nutrient-related degradation was observed in the Ruppia -dominated estuarine ecosystem. A new round of water-quality monitoring and streamflow measurements was conducted to determine nitrogen loading from 2008 to 2011 as a means to evaluate the effects of increased rural residential housing within the watershed since 2000. On the basis of a 2.6-percent increase in residential-housing land use in the watershed from 2000 to 2010, simulations of nitrogen export predicted a 7-percent increase in nitrogen loading to Northeast Creek. The measurement-based loads estimated for the Northeast Creek tributaries, however, increased much more than predicted, from 1.89 kilograms per hectare per year (kg/ha/yr) in 2000 to 3.12 kg/ha/yr in the time period centered on 2010—a 66-percent increase. This increase is likely primarily a result of the prevalence of much wetter conditions during the 2008–11 sampling period than during the earlier sampling period. In addition to increasing the physical transport of nitrogen in the watershed, wet climatic conditions have been shown in other studies to increase the rates of biotic and abiotic processes that control nitrogen export from northern-latitude forested watersheds. The new loading estimates, however, also support the possibility that some portion of the increase in nitrogen loading results from the observed land-use changes, and that the increase in residential housing has, in fact, contributed to the observed increase in nitrogen loading.

Maine