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At least 199 records · Page 11Linked to original sources
USGS2024

Rangewide occupancy of a flagship species, the Coastal California Gnatcatcher (Polioptila californica californica) in southern California: Habitat associations and recovery from wildfire

The Coastal California Gnatcatcher ( Polioptila californica californica ), a federally threatened species, is a flagship species for regional conservation planning in southern California (USA). An inhabitant of coastal sage scrub vegetation, the gnatcatcher has declined in response to habitat loss and fragmentation, exacerbated by catastrophic wildfires. We documented the status of gnatcatchers throughout their California range and examined post-fire recovery of gnatcatchers and their habitat. We used GIS to develop a habitat suitability model for Coastal California Gnatcatchers using climate and topography covariates and selected over 700 sampling points in a spatially balanced manner. Bird and vegetation data were collected at each point between March and May in 2015 and 2016. Presence/absence of gnatcatchers was determined during three visits to points, using area searches within 150 x 150 m plots. We used an occupancy framework to generate Percent Area Occupied (PAO) by gnatcatchers, and analyzed PAO as a function of time since fire. At the regional scale in 2016, 23% of the points surveyed were occupied by gnatcatchers, reflecting the effect of massive wildfires in the last 15 years. Similarly, PAO in the post-fire subset of points was 24%, with the highest occupancy in unburned (last fire <2002) habitat. Positive predictors of occupancy included percent cover of California sagebrush ( Artemisia californica ), California buckwheat ( Eriogonom fasciculatum ), and sunflowers ( Encelia spp., Bahiopsis laciniata ), while negative predictors included laurel sumac ( Malosma laurina ) and total herbaceous cover; in particular, non-native grasses. Our findings indicate that recovery from wildfire may take decades, and provide information to speed up recovery through habitat restoration.

California↗
USGS2007

PONDCALC: A tool to estimate discharge from the Alviso Salt Ponds, California

Former commercial salt ponds in Alviso, California, now are operated by the U.S. Fish and Wildlife Service (USFWS) to provide habitat for birds. The USFWS has modified the operation of the ponds to prevent exceedingly high salinity. Ponds that were formerly hydraulically isolated from South San Francisco Bay and adjacent sloughs now are managed as flow-through ponds, and some are allowed to discharge to the Bay and sloughs. This discharge is allowed under a permit issued by the Regional Water Quality Control Board. As a requirement of the permit, the USFWS must estimate the amount of discharge from each discharge pond for the period May through November of each year. To facilitate the accurate estimation of pond discharge, a calculation methodology (hereafter referred to as 'calculator' or PONDCALC) for the discharging Alviso ponds has been developed as a Microsoft Excel file and is presented in this report. The presence of flap gates on one end of the discharge culverts, which allow only outflow from a pond, complicates the hydraulic analysis of flow through the culverts. The equation typically used for culvert flow contains an energy loss coefficient that had to be determined empirically using measured water discharge and head at the discharge structure of one of the ponds. A standard weir-flow equation is included in PONDCALC for discharge calculation in the ponds having weir box structures in addition to culverts. The resulting methodology is applicable only to the five Alviso ponds (A2W, A3W, A7, A14, and A16) that discharge to South San Francisco Bay or adjacent sloughs under the management practices for 2005.

California↗
USGS1994

Use of sentinel mallards for epizootiologic studies of avian botulism

Captive-reared mallards (Anas platyrhynchos) were used as sentinels to study the epizootiology of avian botulism at the Sacramento National Wildlife Refuge, Willows, California (USA) from 1986 to 1989. Sentinel mallards were wing-clipped, and 40 to 50 birds were confined in 1.6-ha enclosures in 11 selected wetlands (pools). Enclosures were searched intensively three to four times weekly from July through October. Sick and dead wild and sentinel birds were collected, necropsied, and tested for type C botulism toxin. Botulism epizootics occurred in sentinel mallards in 1986, 1987, and 1989, but only a few isolated cases of botulism were detected in 1988. In most epizootics, botulism also was detected simultaneously in wild birds using the same pool outside the enclosure. Epizootics in sentinels were initiated and perpetuated in the absence of vertebrate carcasses. A sex-specific trend in the probability of intoxication was detected, with males contracting botulism at a higher rate than females. Daily mortality rates of sentinels during botulism epizootics ranged from 0.0006 to 0.0600, with a mean of 0.0190. These rates would result in the daily loss of 0.6 to 60 birds per thousand at risk. The use of sentinel birds provided an effective means of gathering site-specific epizootiologic data.

California↗
USGS2024

Potential use of poultry farms by wild waterfowl in California's Central Valley varies across space, times of day, and species: implications for influenza transmission risk

Interactions between wildlife and livestock can lead to cross-species disease transmission, which incurs economic costs and threatens wildlife conservation. Wild waterfowl are natural hosts of avian influenza viruses (AIVs), are often abundant near poultry farms, and have been linked to outbreaks of AIVs in poultry. Interspecific and seasonal variation in waterfowl movement and habitat use means that the risk of disease transmission between wild birds and poultry inevitably varies across species, space, and time. Here, we used GPS telemetry data from 10 waterfowl species in and near California's Central Valley, a region where both wild waterfowl and domestic poultry are abundant, to study selection of poultry farms by waterfowl across diel, seasonal, and annual cycles. We found that waterfowl selected for wetlands, open water, protected areas, and croplands, which meant that they generally avoided habitats that were likely to be used for poultry farming. These selection patterns were linked to species' ecology and diel behavioral patterns, such that avoidance of poultry habitats was stronger for local or partial migrants than for long-distance migrants, and stronger during daytime than at night. We then combined these habitat selection results with data on poultry farm locations to map risk of waterfowl–poultry contact across the Central Valley. Average selection strength at poultry farms was low, suggesting that current placement of poultry farms is generally effective for limiting risk of contact with wild birds. When we combined these habitat selection results with data on species' abundances and AIV infection prevalence, we found dramatic variation in potential AIV transmission risk among species. These results could be used to prioritize surveillance and biosecurity efforts for regions and times of relatively high risk. More generally, these results highlight that fine-scale movement data can help identify interspecific, seasonal, and diel patterns in animal behaviors that affect wildlife and poultry health.

California↗
USGS2014

Annual migratory patterns of long-billed curlews in the American west

Effective conservation of migratory species requires comprehensive knowledge of annual movement patterns. Such information is sparse for the Long-billed Curlew ( Numenius americanus ), a North American endemic shorebird of conservation concern. To test hypotheses about individual and area differences in migratory patterns across western North America, we tagged 29 curlews with satellite transmitters at breeding sites in Oregon, Nevada, and Montana. Transmissions from 28 birds for up to 4 years demonstrated that all wintered within the species’ known winter range, including 9 from Oregon tracked to agricultural areas of California’s Central Valley; 5 from Nevada tracked to the Central Valley, northern Gulf of California, or west coast of Baja California, Mexico; and 14 from Montana that wintered inland, from the Texas Panhandle south to the Mexican Plateau, or near the Gulf of Mexico. Montana breeders migrated east of the Rocky Mountains and traveled more than twice the distance of Oregon and Nevada breeders. Montana birds also stopped more often and longer during most passages. As a group, curlews arrived on their Oregon breeding grounds earlier than in Montana, while males preceded females in Montana and possibly Oregon. No consistent pattern emerged between sexes in departure from breeding areas, although within pairs males departed later than their mates. Individuals exhibited strong fidelity to breeding and wintering sites, and many birds showed a strong propensity for agricultural regions during winter. Our results underscore the importance of studying

Montana;Nevada;Oregon↗
USGS1998

Reproductive success of Belding's Savannah Sparrows in a highly fragmented landscape

Habitat fragmentation can influence the abundance and distribution of birds. Decreases in patch size increase the amount of edge habitat, which can allow greater invasion by exotic species, predators, and brood parasites (Hagan and Johnston 1992, Donovan et al., 1995). Fragmented habitats may act as population sinks and result in local extinctions unless immigration occurs from source habitats (Pulliam 1988, Howeet al., 1991, Pulliam et al., 1992, Stacey and Taper 1992). Fragmentation is especially severe in coastal California, where about 75% of the presettlement acreage of coastal wetlands has been lost to development (Zedler 1982, Zedler and Powell 1993). This degradation has produced a highly fragmented landscape that may have a negative influence on the Belding's Savannah Sparrow ( Passerculus sandwichensis beldingi ), which is one of two wetland-dependent bird species endemic to coastal salt marshes in southern California. This nonmigratory subspecies is listed as endangered by the State of California. Statewide censuses of Belding's Savannah Sparrows reveal wide fluctuations in local population sizes, with local extinctions occurring in some years (Zembalet al. 1988). Thus, the population dynamics of Belding's Savannah Sparrow may reflect the effects of fragmentation.

The Auk↗
USGS2014

Interspecific nest parasitism by chukar on greater sage-grouse

Nest parasitism occurs when a female bird lays eggs in the nest of another and the host incubates the eggs and may provide some form of parental care for the offspring (Lyon and Eadie 1991). Precocial birds (e.g., Galliformes and Anseriformes) are typically facultative nest parasites of both their own and other species (Lyon and Eadie 1991). This behavior increases a female’s reproductive success when she parasitizes other nests while simultaneously raising her own offspring. Both interspecific and conspecific nest parasitism have been well documented in several families of the order Galliformes, particularly the Phasianidae (Lyon and Eadie 1991, Geffen and Yom-Tov 2001, Krakauer and Kimball 2009). The Chukar (Alectoris chukar) has been widely introduced as a game bird to western North America from Eurasia and is now well established within the Great Basin from northeastern California east to Utah and north to Idaho and Oregon (Christensen 1996). Over much of this range the Chukar occurs with other phasianids, including the native Greater Sage-Grouse (Centrocercus urophasianus), within sagebrush (Artemisia spp.) steppe (Christensen 1996, Schroeder et al. 1999, Connelly et al. 2000). Chukar typically exploit a broader range of habitats than do sage-grouse, but both species use the same species of sagebrush and other shrubs for nesting cover (Christensen 1996, Schroeder et al. 1999). Chukar are known to parasitize nests of other individuals of their own species (Geffen and Yom-Tov 2001), but we are unaware of reported evidence that Chukar may parasitize nests of sage-grouse. Here we describe a case of a Chukar parasitizing a sage-grouse nest in the sagebrush steppe of western Nevada.

Western Birds↗
USGS2023

Changes in habitat suitability for wintering dabbling ducks during dry conditions in the Central Valley of California

In arid and Mediterranean regions, landscape-scale wetland conservation requires understanding how wildlife responds to dynamic freshwater availability and conservation actions to enhance wetland habitat. Taking advantage of Landsat satellite data and structured and community science bird survey data, we built species distribution models to describe how three duck species, the Northern Pintail ( Anas acuta ), Green-winged Teal ( Anas crecca ), and Northern Shoveler ( Anas clypeata ), respond to freshwater supply and food resources on different flooded land cover types in the Central Valley of California. Specifically, our models compared duck habitat suitability between the wettest and driest conditions in each month from September through April. Using abundance-weighted boosted regression trees, we created three sets of species occurrence models based on different covariates: (1) near real-time (hereafter “real-time”) covariates in which duck observations were matched to the water availability within the 16-day window of a Landsat observation, (2) a combination of real-time covariates and waterfowl food resource covariates describing annual corn and rice biomass and managed wetland moist soil seed yield estimates derived from Landsat data, and (3) long-term average covariates—the most common approach to species distribution modeling—in which long-term average surface water availability was used. We modeled the monthly occurrence of three duck species as a function of surface water availability, land cover type, road density, temperature, and bird data source. We found that dry conditions result in reduced habitat suitability, with the biggest reductions in November through January and in agricultural fields; in contrast, suitability of flooded wetland habitat was relatively robust to surface water availability. When models of habitat suitability based on long-term average climate conditions were compared to models based on real-time conditions, the highest long-term suitability values occurred in areas where suitability was high regardless of whether it was a wet or a dry year. While all models performed well, the inclusion of crop and wetland plant yield covariates resulted in slightly higher model performance. Overall, species distribution models created using data on the environmental conditions present at the time of bird observations can aid conservation efforts under extreme conditions over large spatial scales.

California↗
USGS2003

Human-induced contaminant impacts on migratory birds: Lessons from the North American eared grebe ( Podiceps nigricollis )

The effects of aquatic contaminants generated by soda ash mining processes on the North American eared grebe ( Podiceps nigricollis ) population illustrates important issues associated with human-induced habitat degradation on the health of migratory species. Eared grebes have been extensively studied in their staging and breeding habitats, but little is known about their 2- to 3-day migratory periods. During migration, few bodies of water are available to the birds for refuge between freshwater breeding areas in Canada and hypersaline lakes (e.g., Great Salt Lake in Utah or Mono Lake in California) to which they migrate. One geographic refuge area includes a series of "tailings" ponds associated with soda ash mining operations in southwestern Wyoming. The ponds range from 100-1200 acres, with water containing high concentrations of sodium decahydrate (Na 2 CO 3 &bull;10H 2 O). At cool temperatures (generally < 40&deg;F) sodium decahydrate precipitates out of the water and crystallizes on solid objects in the ponds or on the water surface. Bird mortality on these ponds has been recognized since the early 1970's, and the mining companies have developed hazing strategies and rehabilitation programs in order to minimize mortality. In order to determine causes of grebe mortality and devise strategies to reduce mortality, a field epidemiologic investigation was developed with the following objectives: 1) to determine whether eared grebes have quantifiable physiologic abnormalities associated with exposure to soda ash mine pond water; 2) to evaluate physical effects of sodium decahydrate crystallization on grebe survival; 3) to establish cause of death based on necropsy of deceased grebes; 4) to determine long-term survivability of eared grebes after exposure to the pond water; and 5) to evaluate water quality and determine whether aquatic invertebrates are present in the ponds as a possible food source.

California, Utah↗
USGS2007

Random forests for classification in ecology

Classification procedures are some of the most widely used statistical methods in ecology. Random forests (RF) is a new and powerful statistical classifier that is well established in other disciplines but is relatively unknown in ecology. Advantages of RF compared to other statistical classifiers include (1) very high classification accuracy; (2) a novel method of determining variable importance; (3) ability to model complex interactions among predictor variables; (4) flexibility to perform several types of statistical data analysis, including regression, classification, survival analysis, and unsupervised learning; and (5) an algorithm for imputing missing values. We compared the accuracies of RF and four other commonly used statistical classifiers using data on invasive plant species presence in Lava Beds National Monument, California, USA, rare lichen species presence in the Pacific Northwest, USA, and nest sites for cavity nesting birds in the Uinta Mountains, Utah, USA. We observed high classification accuracy in all applications as measured by cross-validation and, in the case of the lichen data, by independent test data, when comparing RF to other common classification methods. We also observed that the variables that RF identified as most important for classifying invasive plant species coincided with expectations based on the literature. ?? 2007 by the Ecological Society of America.

Ecology↗
USGS2015

Monitoring avian productivity and survivorship (MAPS) 5-year summary, Naval Outlying Landing Field, Imperial Beach, southwestern San Diego County, California, 2009-13

During 2009&ndash;13, a Monitoring Avian Productivity and Survivorship (MAPS) banding station was operated at the Naval Outlying Landing Field (NOLF), Imperial Beach, in southwestern San Diego County, California. The station was established as part of a long-term monitoring program of Neotropical migratory bird populations on NOLF and helps Naval Base Coronado (NOLF is a component) meet the goals and objectives of Department of Defense Partners in Flight program and the Birds and Migratory Birds Management Strategies of the Naval Base Coronado Integrated Natural Resources Management Plan. During 2009&ndash;13, captures averaged 644 &plusmn;155 per year. Fifty-seven species were captured, of which 44 are Neotropical migratory species and 33 breed at the MAPS station. Twenty-two sensitive species were detected, including Least Bell&rsquo;s Vireo ( Vireo bellii pusillus ), Willow Flycatcher ( Empidonax traillii ), Yellow-breasted Chat ( Icteria virens ) and Yellow Warbler ( Setophaga petechia ). Local population trends varied among species and years, as did annual productivity (number of young per adult). We found no significant relationship between productivity and the observed population size in the subsequent year for any species, nor did we find an association between productivity and precipitation for the current bio-year. Similarly, survivorship varied across species and years, and there was no obvious relationship between adult survivorship and observed population size for any species except Wrentit ( Chamaea fasciata ), for which the relationship was positive. Adult survivorship was unrelated to precipitation at the MAPS station. Additional years of data will be required to generate sample sizes adequate for more rigorous analyses of survivorship and productivity as predictors of population growth.

California↗
USGS1983

Pacific Coast Caspian Terns: Dynamics of an expanding population

Nesting distribution, age-related seasonal movements, survivorship, and mechanisms of population expansion in Pacific Coast Caspian Terns (Sterna caspia) were examined primarily through analysis of 412 recoveries of birds banded as juveniles between 1935 and 1980. Since the beginning of this century, the population has shifted from nesting in numerous small colonies associated with freshwater marshes in interior California and southern Oregon to nesting primarily in large colonies on human-created habitats along the coast. Colonies at Grays Harbor, Washington and San Francisco and San Diego bays, California account for 77% of the current Pacific Coast population (6,000 pairs), which has breeding and wintering areas separate from those of populations east of the continental divide. There also appears to be some segregation on the wintering grounds by birds from the three major colonies within the Pacific population. Age-related seasonal movements in the Pacific population are characterized by (1) a brief period of northward dispersal by newly fledged birds before migrating to the wintering grounds, (2) a residency on the wintering grounds through their second winter, (3) a return to the breeding grounds the third summer, when most birds are thought to prospect breeding sites and some may breed, and (4) attainment of adulthood the fourth summer, with subsequent annual movements between wintering and breeding grounds. The Pacific population has increased 70% since 1960, apparently all by intrinsic growth. Over half (57%) of the fledglings reach their fourth year, and they have a subsequent annual survival rate of 89% and a mean breeding life expectancy of 8.6 yr. An average annual fledging rate of 0.64 young per pair was calculated as necessary to have provided the observed growth of the population during its recent expansion. Growth of some of the individual colonies, however, particularly those in Washington, could only have resulted from extensive recruitment of birds from other Pacific Coast colonies. Philopatry is low in this population, and the growth of the northern colonies involved recruitment primarily of first-time breeders but also of some older adults. Factors promoting both first-time breeders and older adults to join new and often distant colonies are discussed.

California, Washington↗
USGS1969

Relationships of the avifauna of San Esteban Island, Sonora

Seven species of geographically variable birds have been reported as part of the resident avifauna of San Esteban Island in the Gulf of California, Sonora. Two of these, the Curvebilled Thrasher and the Blue-gray Gnatcatcher, may not actually have breeding populations there, at least at the present time. Of the seven, only two, the Verdin and the doubtfully resident thrasher, can be used in a determination of the relationships of the avifauna, and both show affinities to that of Sonora. The Ash-throated Flycatcher and the House Finch are represented by the same form on San Esteban and in both Sonora and Baja California at the latitude of the island. Neither the Ladder-backed Woodpecker nor the endemic Black-throated Sparrow shows greater similarity to the Baja California or Sonoran avifauna. The slight balance of evidence indicates that the avifauna of San Esteban Island is best considered with that of Sonora.

San Estéban Island↗
USGS1988

Sublethal landrin toxicity: Behavioral and physiological effects on captive vultures

Use of conditioned taste aversion (CTA) has been proposed to reduce consumption of California condor (Gymnogyps californianus) eggs by ravens (Corvus corax). Although landrin has induced aversions in ravens and other birds, no data were available on behavioral and physiological effects of landrin on condors, non-target birds that might consume treated eggs. Because condors are endangered, we selected taxonomically related surrogates to approximate the effects on condors of acute oral doses of landrin. Seven black vultures (Coragyps atratus), 2 turkey vultures (Cathartes aura), and 2 king vultures (Sarcoramphus papa) received landrin and placebo treatments 1 week apart. Plasma cholinesterase (ChE) activity was monitored at zero, 3, and 24 hours posttreatment, and behavioral observations were made for 2 hours posttreatment. The doses tested were nonlethal, and ChE levels approached normal within 24 hours after treatment. Only the frequency of vomiting differed statistically between the placebo and landrin treatment. We conclude that with appropriate precautions, landrin can be used in applications of CTA to discourage consumption of condor eggs by ravens, while posing no apparent risk to reintroduced condors.

Journal of Wildlife Management↗
USGS2008

Southwestern Willow Flycatcher Breeding Site and Territory Summary - 2007

The Southwestern willow flycatcher (Empidonax traillii extimus; hereafter references to willow flycatcher and flycatcher refer to E.t. extimus, except where specifically noted) is an endangered bird that breeds only in dense riparian habitats in parts of six Southwestern states (Arizona, New Mexico, southern California, extreme southern Nevada, southern Utah, and southwestern Colorado). Since 1993, hundreds of Southwestern willow flycatcher surveys have been conducted each year, and many new flycatcher breeding sites located. This document synthesizes the most current information available on all known Southwestern willow flycatcher breeding sites. This rangewide data synthesis was designed to meet two objectives: (1) identify all known Southwestern willow flycatcher breeding sites and (2) assemble data to estimate population size, location, habitat, and other information for all breeding sites, for as many years as possible, from 1993 through 2007. This report provides data summaries in terms of the number of flycatcher sites and the number of territories. When interpreting and using this information, it must be kept in mind that a 'site' is a geographic location where one or more willow flycatchers establishes a territory. Sites with unpaired territorial males are considered breeding sites, even if no nesting attempts were documented. A site is often a discrete patch of riparian habitat but may also be a cluster of riparian patches; there is no standardized definition for site, and its use varies within and among states. For example, five occupied habitat patches along a 10-km stretch of river might be considered five different sites in one state but only a single site in another state. This lack of standardization makes comparisons based on site numbers problematic. Researchers for this report generally deferred to statewide summary documents or to local managers and researchers when delineating a site for inclusion in the database. However, to avoid inflating the number of sites and to establish more consistent definitions of the term 'site', adjacent and nearby sites from statewide reports were sometimes considered as a single site for the purposes of the rangewide data summary. Any combining or splitting of sites at the rangewide level was done on a case-by-case basis. Because of differences in site definitions, one should not evaluate the relative importance of a geographic region (such as drainage, watershed, or state) simply according to the number of flycatcher sites. A 'territory' is an exclusive defended area within a breeding site. Although detailed monitoring studies have identified unpaired territorial males and polygynous males at some flycatcher breeding sites, for the purposes of this report a territory is equivalent to the exclusive breeding area of a pair of flycatchers. In general, the concept of territory is more similar among states and different investigators than site; thus, it is a more robust unit to use for summaries and comparisons. However, note that the definition of a polygynous territory is not consistent among states; a male polygynously paired with two females would be considered one territory in some states and two territories in other states. For each site, we referred to reports or spoke directly with researchers and managers to gather information such as management entity/agency, location (state, drainage, elevation), gross habitat type (native, exotic, or mixed; dominant tree species), and number of flycatcher territories. Synthesizing the information on more than 200 breeding sites is challenging because annual data-collection and survey-reporting requirements are not standardized rangewide, and the nature and degree of readily available information varies widely from state to state. This is particularly true for areas such as California, where there are many flycatcher sites but surveyors are not required to submit standardized flycatcher survey forms. The lack of c

Open-File Report↗
USGS1974

The status of the light-footed clapper rail

Only 12 California marsh areas are presently believed to be inhabited by the Light-footed Clapper Rail, and eight of these appear to support only 5-15 birds apiece. Tentative estimates for the other four are: Anaheim Bay 200, Upper Newport 30-35, Los Penasquitos 30, and Tijuana Estuary 150. These estimates, admittedly very rough, indicate a total Light-footed Rail population on only about 500 birds. Recognizing that rails are secretive and hard to inventory, the actual count could be somewhat higher, but I feel it is most unlikely that the number could be more than 750 birds altogether. Reductions in Light-footed Clapper Rail populations can be attributed almost entirely to loss of habitat. An estimated 26,000 acres of saltmarsh once existed between Santa Barbara and the Mexican border. At present there are approximately 8500 acres, much of which has been degraded by pollution, water diversion, and restriction of tidal flow. Of those areas currently occupied by Clapper Rails, few can be considered to have a very secure future. Of the four major areas only Anaheim Bay appears to be relatively safe from future habitat destruction. Tijuana Estuary, Los Penasquitos Lagoon, and Upper Newport Bay are all threatened by commercial developments that could reduce or destroy local rail populations. I have not visited Baja California, but I believe there is still a substantial population of Clapper Rails in the marshes around San Quintin Bay. Taxonomists do not agree on the subspecific identity of these birds, but some feel they are representatives of the Light-footed race. If so, it is fortunate to have a relatively secure (for now) reservoir of these birds, but whether the Light-footed Clapper Rail survives within the United States may well be decided within the next few years.

American Birds↗