Search USGSSearch

SEARCH · Search USGS

Results for “CHANCE”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 199 records · Page 11Linked to original sources

Faster growth and larger size at crèche onset are associated with higher offspring survival in Adélie Penguins

We conducted the first assessment of Adélie Penguin ( Pygoscelis adeliae ) chick survival that accounts for imperfect resighting. We found that when chicks are larger in size when they enter the crèche stage (the period when both parents forage at the same time and chicks are left relatively unprotected), they have a higher probability of survival to fledging. We investigated the relationships between growth, crèche timing, and chick survival during one typical year and one year of reduced food availability. Chicks that hatched earlier in the season entered the crèche stage older, and chicks that both grew faster and crèched older entered the crèche at a larger size. These relationships were stronger in the year of reduced food availability. Thus, parents increased their chicks’ chance of fledging if they provided sufficient food for faster growth rates and/or extended the length of the brood-guarding period. Early nest initiation (i.e., early hatching) provided parents with the opportunity to extend the guard period and increase chick survival. However, to extend the guard stage successfully, they must provide larger meals and maintain higher chick growth rates, even if just one parent at a time is foraging, which previous work has shown is not possible for all individuals. We show that the factors governing tradeoffs in chick-rearing behavior of Adélie Penguin parents may vary in accord with environmental conditions, a result from which we can better understand species’ adaptations to environmental changes.

Ornithology

Volcano geodesy: Challenges and opportunities for the 21st century

Intrusions of magma beneath volcanoes deform the surrounding rock and, if the intrusion is large enough, the overlying ground surface. Numerical models generally agree that, for most eruptions, subsurface volume changes are sufficient to produce measurable deformation at the surface. Studying this deformation can help to determine the location, volume, and shape of a subsurface magma body and thus to anticipate the onset and course of an eruption. This approach has been successfully applied at many restless volcanoes, especially basaltic shields and silicic calderas, using various geodetic techniques and sensors. However, its success at many intermediate-composition strato-volcanoes has been limited by generally long repose intervals, steep terrain, and structural influences that complicate the history and shape of surface deformation. These factors have made it difficult to adequately characterize deformation in space and time at many of the world's dangerous volcanoes. Recent technological advances promise to make this task easier by enabling the acquisition of geodetic data of high spatial and temporal resolution from Earth-orbiting satellites. Synthetic aperture radar interferometry (InSAR) can image ground deformation over large areas at metre-scale resolution over time-scales of a month to a few years. Global Positioning System (GPS) stations can provide continuous information on three-dimensional ground displacements at a network of key sites -information that is especially important during volcanic crises. By using InSAR to determine the shape of the displacement field and GPS to monitor temporal changes at key sites, scientists have a much better chance to capture geodetic signals that have so far been elusive at many volcanoes. This approach has the potential to provide longer-term warnings of impending volcanic activity than is possible with other monitoring techniques.

Philosophical Transactions of the Royal Society A:

Modes of climate variability bridge proximate and evolutionary mechanisms of masting

There is evidence that variable and synchronous reproduction in seed plants (masting) correlates to modes of climate variability, e.g. El Niño Southern Oscillation and North Atlantic Oscillation. In this perspective, we explore the breadth of knowledge on how climate modes control reproduction in major masting species throughout Earth's biomes. We posit that intrinsic properties of climate modes (periodicity, persistence and trends) drive interannual and decadal variability of plant reproduction, as well as the spatial extent of its synchrony, aligning multiple proximate causes of masting through space and time. Moreover, climate modes force lagged but in-phase ecological processes that interact synergistically with multiple stages of plant reproductive cycles. This sets up adaptive benefits by increasing offspring fitness through either economies of scale or environmental prediction. Community-wide links between climate modes and masting across plant taxa suggest an evolutionary role of climate variability. We argue that climate modes may ‘bridge’ proximate and ultimate causes of masting selecting for variable and synchronous reproduction. The future of such interaction is uncertain: processes that improve reproductive fitness may remain coupled with climate modes even under changing climates, but chances are that abrupt global warming will affect Earth's climate modes so rapidly as to alter ecological and evolutionary links.

Philosophical Transactions of the Royal Society B:

Assessing the sustainability of Pacific walrus harvest in a changing environment

Harvest sustainability is a primary goal of wildlife management and conservation, and in a changing world it is increasingly important to consider environmental drivers of population dynamics alongside harvest in cohesive management plans. This is particularly pertinent for harvested species that are acutely experiencing effects of climate change. The Pacific walrus ( Odobenus rosmarus divergens ), a critical traditional subsistence resource for indigenous communities, is simultaneously subject to rapid habitat loss associated with diminishing sea ice and an increasing anthropogenic footprint in the Arctic. We developed a theta-logistic population modeling-management framework to evaluate various harvest scenarios combined with four potential climate/disturbance scenarios (ranging from optimistic–pessimistic) which simulates Pacific walrus population dynamics to the end of the 21 st century. We considered two types of harvest strategies: (1) adaptive harvest scenarios wherein harvest is calculated as a percentage of the population and annual harvests are updated at set intervals as the population is reassessed, and (2) non-adaptive harvest scenarios wherein annual harvest remains constant. All climate/disturbance scenarios indicated declines of varying severity in Pacific walrus abundance to the end of the 21 st century, even in the absence of harvest. However, we found that an adaptive annual harvest of 1.23% of the independent-aged female subset of the population (e.g., 1,280 independent-aged females harvested in 2020, representing contemporary harvest levels) met our criterion for sustainability (>70% probability of maintaining population abundance above maximum net productivity level) under all climate/disturbance scenarios, accepting a medium risk tolerance level of 25%. This suggests that the present rate of Pacific walrus harvest is sustainable and will continue to be—provided the harvest adapts to match changes in population dynamics. Our simulations suggest that a sustainable non-adaptive harvest is also possible, but only at low levels if the population declines as expected. Applying a constant annual harvest of 1,280 independent-aged females (equivalent to contemporary harvest levels of 1.23) exceeded our criterion for sustainability and resulted in a >5% chance of quasi-extinction by the end of the 21 st century under three of the four climate/disturbance scenarios we evaluated. Our results highlight the importance of adaptive co-management strategies, and we suggest such modeling frameworks are useful for managing for harvest sustainability in a changing climate.

BioRxiv

Accounting for false-positive acoustic detections of bats using occupancy models

1. Acoustic surveys have become a common survey method for bats and other vocal taxa. Previous work shows that bat echolocation may be misidentified, but common analytic methods, such as occupancy models, assume that misidentifications do not occur. Unless rare, such misidentifications could lead to incorrect inferences with significant management implications. 2. We fit a false-positive occupancy model to data from paired bat detector and mist-net surveys to estimate probability of presence when survey data may include false positives. We compared estimated occupancy and detection rates to those obtained from a standard occupancy model. We also derived a formula to estimate the probability that bats were present at a site given its detection history. As an example, we analysed survey data for little brown bats Myotis lucifugus from 135 sites in Washington and Oregon, USA. 3. We estimated that at an unoccupied site, acoustic surveys had a 14% chance per night of producing spurious M. lucifugus detections. Estimated detection rates were higher and occupancy rates were lower under the false-positive model, relative to a standard occupancy model. Un-modelled false positives also affected inferences about occupancy at individual sites. For example, probability of occupancy at individual sites with acoustic detections but no captures ranged from 2% to 100% under the false-positive occupancy model, but was always 100% under a standard occupancy model. 4. Synthesis and applications. Our results suggest that false positives sufficient to affect inferences may be common in acoustic surveys for bats. We demonstrate an approach that can estimate occupancy, regardless of the false-positive rate, when acoustic surveys are paired with capture surveys. Applications of this approach include monitoring the spread of White-Nose Syndrome, estimating the impact of climate change and informing conservation listing decisions. We calculate a site-specific probability of occupancy, conditional on survey results, which could inform local permitting decisions, such as for wind energy projects. More generally, the magnitude of false positives suggests that false-positive occupancy models can improve accuracy in research and monitoring of bats and provide wildlife managers with more reliable information.

Oregon, Washington

Modeling summer month hydrological drought probabilities in the United States using antecedent flow conditions

Climate change raises concern that risks of hydrological drought may be increasing. We estimate hydrological drought probabilities for rivers and streams in the United States (U.S.) using maximum likelihood logistic regression (MLLR). Streamflow data from winter months are used to estimate the chance of hydrological drought during summer months. Daily streamflow data collected from 9,144 stream gages from January 1, 1884 through January 9, 2014 provide hydrological drought streamflow probabilities for July, August, and September as functions of streamflows during October, November, December, January, and February, estimating outcomes 5-11 months ahead of their occurrence. Few drought prediction methods exploit temporal links among streamflows. We find MLLR modeling of drought streamflow probabilities exploits the explanatory power of temporally linked water flows. MLLR models with strong correct classification rates were produced for streams throughout the U.S. One ad hoc test of correct prediction rates of September 2013 hydrological droughts exceeded 90% correct classification. Some of the best-performing models coincide with areas of high concern including the West, the Midwest, Texas, the Southeast, and the Mid-Atlantic. Using hydrological drought MLLR probability estimates in a water management context can inform understanding of drought streamflow conditions, provide warning of future drought conditions, and aid water management decision making.

Journal of the American Water Resources Associatio

On the existence of maximum likelihood estimates for presence-only data

Presence-only data can be used to determine resource selection and estimate a species’ distribution. Maximum likelihood is a common parameter estimation method used for species distribution models. Maximum likelihood estimates, however, do not always exist for a commonly used species distribution model – the Poisson point process. We demonstrate the issue with conventional maximum likelihood mathematically, using a data example, and a simulation experiment and show alternative estimation methods. We found that when habitat preferences are strong or the number of presence-only locations is small, by chance, maximum likelihood coefficient estimates for the Poisson point process model may not exist. We found that several alternative estimation methods can produce reliable estimates, but results will depend on the chosen method. It is important to identify conditions for which maximum likelihood estimates are unlikely to be identifiable from presence-only data. In data sets where the maximum likelihood estimates do not exist, penalized likelihood and Bayesian methods will produce coefficient estimates, but these are sensitive to the choice of estimation procedure and prior or penalty term. When sample size is small or it is thought that habitat preferences are strong, we propose a suite of estimation procedures researchers can consider using.

Methods in Ecology and Evolution

Factors affecting species richness and distribution spatially and temporally within a protected area using multi-season occupancy models

Exploring trends in species richness and the distribution of individual species over time as well as the factors affecting these trends informs conservation priorities in protecting species and ecosystems as a whole. We used data from 41 park-wide line transect surveys in 2009 and 2014 and multi-season occupancy models with multi-species data to explore trends in species richness and distribution of individual species and factors affecting these trends in Nyungwe National Park (NNP), Rwanda. Mammalian species richness and the distributional range of 5 of the 7 species increased between 2009 and 2014 in NNP. The probability of colonization of a species into a new area in 2014, where it was not present in 2009, was highest in sites with a lower probability of poaching activity, close to tourist trails, and at lower elevations. The probability of colonization with no poaching activity was about 50% but dropped to about 10% with a 100% chance of poaching activity. Duiker species had the largest increase in distribution during the study, while there was a decrease in the distribution of the eastern chimpanzee and blue monkey. Our results suggest that increased patrols should be implemented in areas of the park with low species richness and areas with a low probability of occurrence for species of conservation concern to combat poaching activity and thus increase the probability of a species moving into a new area. Our use of a single multi-season model for multiple species explicitly accounts for imperfect detection and species-specific identities, while allowing for inferences to be made about rarely detected species by sharing covariates with common species. These results can be used to improve conservation planning in NNP for species management and ranger patrol protocols and our modelling framework is broadly applicable to any protected area with presence/absence species field data.

Nyungwe Forest National Park

Defining relevant conservation targets for the endangered Southern California distinct population segment of the mountain yellow-legged frog (Rana muscosa)

The endangered mountain yellow-legged frog ( Rana muscosa ) has been reduced to <10 isolated populations in the wild. Due to frequent catastrophic events (floods, droughts, wildfires), the recent dynamics of these populations have been erratic, making the future of the species highly uncertain. In 2018, a recovery plan was developed to improve the species status by reducing the impacts of various threats (predation, disease, habitat destruction), as well as reinforcing wild populations through the reintroduction of captive-bred frogs. The short-term goal stated in this plan was to reach a minimum of 20 populations of 50 adults each (hereafter, the 20/50 target ), before the species can be considered for downlisting from the U.S. Endangered Species Act. However, there is no guarantee that this 20/50 target will be sufficient to ensure the species persistence in the long run. Using 19 years of mark-recapture data, we estimated populations' demographic trends and assessed the viability of R. muscosa from a starting state of 20 populations of 50 adults each (i.e., the downlisting criteria). Our results reveal that, from this 20/50 state , the species has high chances of persistence only at a short time horizon (50 years). Moreover, >80% of populations would be extinct 50 years later. Therefore, the species will not be able to persist without implementation of the reintroduction program. We found that it is more important to increase the number of suitable sites occupied by R. muscosa than to simply reinforce or augment existing populations. Expanding the current distribution by establishing new populations at suitable sites, even after the “20 populations” mark has been reached, would increase the likelihood of the species' persistence in the longer term.

California

Regional coordination between riparian dependence and atmospheric demand in willows (Salix L.) of western North America

Aim Plants vary in their hydrological and climatic niches. How these niche dimensions covary among closely related species can help identify co‐adaptations to hydrological and climatic factors, as well as predict biodiversity responses to environmental change. Location Western United States. Methods Relationships between riparian dependence and climate niches of willows ( Salix L.) were assessed, incorporating phylogenetics and functional traits to understand the adaptive nature of those relationships. The riparian dependence niche was estimated as the mean distance between georeferenced occurrence records and the nearest stream based on the National Hydrography Database. Results were compared to oaks ( Quercus L.), a less riparian‐dependent clade, with the expectation of different niche relationships. Results Willows generally occurred closer to streams than expected by chance, but riparian dependence varied substantially among species. Riparian dependence was positively correlated with mean annual temperature and diurnal temperature range niche, both indicators of atmospheric demand on evapotranspiration. Phylogenetic independent contrast correlations for these relationships were significant as well, and the high degree of niche convergence among species indicated evolutionarily labile co‐adaptations to riparian dependence and atmospheric demand. Plant height increased with mean annual temperature niche, and specific leaf area increased with residual variation in height, indicating underlying morphological correlates of niche variation. Oaks, on the other hand, exhibited no relationship between atmospheric demand and riparian dependence, and weaker niche relationships with riparian dependence overall. Main conclusions These results support the assertion that hydric‐adapted, woody riparian plants compensate for increased atmospheric demand on transpiration with a reliable supply of water provided by riparian habitats and that this trade‐off may be unique from mesic–xeric woody plants. Conservation of warm‐adapted riparian trees and shrubs under increasing temperatures and atmospheric demand may necessitate reversal of groundwater depletion. Cool‐adapted species may be best conserved through maintenance or expansion of riparian buffers as they become more riparian obligate with warming.

Diversity and Distributions

Community synchrony in seed production is associated with trait similarity and climate across North America

Mast seeding, the synchronous and highly variable production of seed crops in perennial plants, is a population level phenomenon and has cascading effects in ecosystems. Mast seeding studies are typically conducted at the population/species level. Much less is known about synchrony in mast seeding between species because the necessary long-term data are rarely available. To investigate synchrony between species within communities, we used long-term data from seven forest communities in the US Long-Term Ecological Research (LTER) network, ranging from tropical rainforest to taiga. We focus on cross-species synchrony and i) quantify synchrony in reproduction overall and within LTER sites, ii) test for relationships between synchrony with trait and phylogenetic similarity, and iii) investigate how climate conditions are related to levels of synchrony. Overall, synchrony in reproduction between woody plant species was greater than expected by chance, but also spanned a wide range of values between species. Based on 11 traits for 103 species (plus phylogenetic relatedness), cross-species synchrony in reproduction was driven primarily by trait similarity with phylogeny being largely unimportant, and synchrony was higher in sites with greater climatic water deficit. Synchronous masting within a community has consequences for understanding forest regeneration dynamics and consumer-resource interactions.

North America

Testing which axes of species differentiation underlie covariance of phylogeographic similarity among montane sedge species

Co‐distributed species may exhibit similar phylogeographic patterns due to shared environmental factors or discordant patterns attributed to the influence of species‐specific traits. Although either concordant or discordant patterns could occur due to chance, stark differences in key traits (e.g., dispersal ability) may readily explain differences between species. Multiple species’ attributes may affect genetic patterns, and it is difficult to isolate the contribution of each. Here we compare the relative importance of two attributes, range size and niche breadth, in shaping the spatial structure of genetic variation in four sedge species (genus Carex ) from the Rocky Mountains. Within two pairs of co‐distributed species, one species exhibits narrow niche breadth, while the other species has broad niche breadth. Furthermore, one pair of co‐distributed species has a large geographical distribution, while the other has a small distribution. The four species represent a natural experiment to tease apart how these attributes (i.e., range size and niche breadth) affect phylogeographic patterns. Investigations of genetic variation and structure revealed that range size, but not niche breadth, is related to spatial genetic covariation across species of montane sedges. Our study highlights how isolating key attributes across multiple species can inform their impact on processes driving intraspecific differentiation.

Molecular Ecology

Fragmentation and thermal risks from climate change interact to affect persistence of native trout in the Colorado River basin

Impending changes in climate will interact with other stressors to threaten aquatic ecosystems and their biota. Native Colorado River cutthroat trout (CRCT; Oncorhynchus clarkii pleuriticus ) are now relegated to 309 isolated high-elevation ( > 1700 m) headwater stream fragments in the Upper Colorado River Basin, owing to past nonnative trout invasions and habitat loss. Predicted changes in climate (i.e., temperature and precipitation) and resulting changes in stochastic physical disturbances (i.e., wildfire, debris flow, and channel drying and freezing) could further threaten the remaining CRCT populations. We developed an empirical model to predict stream temperatures at the fragment scale from downscaled climate projections along with geomorphic and landscape variables. We coupled these spatially explicit predictions of stream temperature with a Bayesian Network (BN) model that integrates stochastic risks from fragmentation to project persistence of CRCT populations across the upper Colorado River basin to 2040 and 2080. Overall, none of the populations are at risk from acute mortality resulting from high temperatures during the warmest summer period. In contrast, only 37% of populations have a greater than or equal to 90% chance of persistence for 70 years (similar to the typical benchmark for conservation), primarily owing to fragmentation. Populations in short stream fragments < 7 km long, and those at the lowest elevations, are at the highest risk of extirpation. Therefore, interactions of stochastic disturbances with fragmentation are projected to be greater threats than warming for CRCT populations. The reason for this paradox is that past nonnative trout invasions and habitat loss have restricted most CRCT populations to high-elevation stream fragments that are buffered from the potential consequences of warming, but at risk of extirpation from stochastic events. The greatest conservation need is for management to increase fragment lengths to forestall these risks.

Upper Colorado River Basin

Investigating species co-occurrence patterns when species are detected imperfectly

1. Over the last 30 years there has been a great deal of interest in investigating patterns of species co-occurrence across a number of locations, which has led to the development of numerous methods to determine whether there is evidence that a particular pattern may not have occurred by random chance. 2. A key aspect that seems to have been largely overlooked is the possibility that species may not always be detected at a location when present, which leads to 'false absences' in a species presence/absence matrix that may cause incorrect inferences to be made about co-occurrence patterns. Furthermore, many of the published methods for investigating patterns of species co-occurrence do not account for potential differences in the site characteristics that may partially (at least) explain non-random patterns (e.g. due to species having similar/different habitat preferences). 3. Here we present a statistical method for modelling co-occurrence patterns between species while accounting for imperfect detection and site characteristics. This method requires that multiple presence/absence surveys for the species be conducted over a reasonably short period of time at most sites. The method yields unbiased estimates of probabilities of occurrence, and is practical when the number of species is small (< 4). 4. To illustrate the method we consider data collected on two terrestrial salamander species, Plethodon jordani and members of the Plethodon glutinosus complex, collected in the Great Smoky Mountains National Park, USA. We find no evidence that the species do not occur independently at sites once site elevation has been allowed for, although we find some evidence of a statistical interaction between species in terms of detectability that we suggest may be due to changes in relative abundances.

North Carolina, Tennessee

Dispersal and individual quality in a long lived species

The idea of differences in individual quality has been put forward in numerous long-term studies in long-lived species to explain differences in lifetime production among individuals. Despite the important role of individual heterogeneity in vital rates in demography, population dynamics and life history theory, the idea of 'individual quality' is elusive. It is sometimes assumed to be a static or dynamic individual characteristic. When considered as a dynamic trait, it is sometimes assumed to vary deterministically or stochastically, or to be confounded with the characteristics of the habitat. We addressed heterogeneity in reproductive performance among individuals established in higher-quality habitat in a long-lived seabird species. We used approaches to statistical inference based on individual random effects permitting quantification of heterogeneity in populations and assessment of individual variation from the population mean. We found evidence of heterogeneity in breeding probability, not success probability. We assessed the influence of dispersal on individual reproductive potential. Dispersal is likely to be destabilizing in species with high site and mate fidelity. We detected heterogeneity after dispersal, not before. Individuals may perform well regardless of quality before destabilization, including those that recruited in higher-quality habitat by chance, but only higher-quality individuals may be able to overcome the consequences of dispersal. Importantly, results differed when accounting for individual heterogeneity (an increase in mean breeding probability when individuals dispersed), or not (a decrease in mean breeding probability). In the latter case, the decrease in mean breeding probability may result from a substantial decrease in breeding probability in a few individuals and a slight increase in others. In other words, the pattern observed at the population mean level may not reflect what happens in the majority of individuals.

Oikos

Reproductive phenologies in a diverse temperate ant fauna

1. Ant nuptial flights are central to understanding ant life history and ecology but have been little studied. This study examined the timing of nuptial flights, the synchronicity of nuptial flights (as a potential index of mating strategy), and variation in nuptial flights with elevation and among years in a diverse temperate ant fauna. 2. Flights occurred throughout the year, but were concentrated in the beginning of summer and in early fall (autumn). Relative to the entire flight season, closely related species tended to be more likely than expected by chance to fly at similar times, perhaps because of phylogenetic constraints on life history evolution. 3. Flights were relatively synchronous within species for nearly all species considered, but synchronicity did not appear to be a robust estimate of overall mating strategy. 4. Overall patterns in nuptial flights among species and the timing of flights for individual species varied with elevation, but did not vary greatly among years. 5. Although this study is one of the most comprehensive on the reproductive flight phenologies of ants, much remains to be learned about the causes and consequences of such spatial and temporal variation in flight phenology. ?? 2007 The Royal Entomological Society.

Ecological Entomology

Influence of harvesting pressure on demographic tactics: Implications for wildlife management

1. Demographic tactics within animal populations are shaped by selective pressures. Exploitation exerts additional pressures so that differing demographic tactics might be expected among populations with differences in levels of exploitation. Yet little has been done so far to assess the possible consequences of exploitation on the demographic tactics of mammals, even though such information could influence the choice of effective management strategies. 2. Compared with similar‐sized ungulate species, wild boar Sus scrofa has high reproductive capabilities, which complicates population management. Using a perturbation analysis, we investigated how population growth rates (λ) and critical life‐history stages differed between two wild boar populations monitored for several years, one of which was heavily harvested and the other lightly harvested. 3. Asymptotic λ was 1·242 in the lightly hunted population and 1·115 in the heavily hunted population, while the ratio between the elasticity of adult survival and juvenile survival was 2·63 and 1·27, respectively. A comparative analysis including 21 other ungulate species showed that the elasticity ratio in the heavily hunted population was the lowest ever observed. 4. Compared with expected generation times of similar‐sized ungulates (more than 6 years), wild boar has a fast life‐history speed, especially when facing high hunting pressure. This is well illustrated by our results, where generation times were 3·6 years in the lightly hunted population and only 2·3 years in the heavily hunted population. High human‐induced mortality combined with non‐limiting food resources accounted for the accelerated life history of the hunted population because of earlier reproduction. 5. Synthesis and applications . For wild boar, we show that when a population is facing a high hunting pressure, increasing the mortality in only one age‐class (e.g. adults or juveniles) may not allow managers to limit population growth. We suggest that simulations of management strategies based on context‐specific demographic models are useful for selecting interventions for population control. This type of approach allows the assessment of population response to exploitation by considering a range of plausible scenarios, improving the chance of selecting appropriate management actions.

Journal of Applied Ecology

Prevalence and differential host-specificity of two avian blood parasite genera in the Australo-Papuan region

The degree to which widespread avian blood parasites in the genera Plasmodium and Haemoproteus pose a threat to novel hosts depends in part on the degree to which they are constrained to a particular host or host family. We examined the host distribution and host-specificity of these parasites in birds from two relatively understudied and isolated locations: Australia and Papua New Guinea. Using polymerase chain reaction (PCR), we detected infection in 69 of 105 species, representing 44% of individuals surveyed (n = 428). Across host families, prevalence of Haemoproteus ranged from 13% (Acanthizidae) to 56% (Petroicidae) while prevalence of Plasmodium ranged from 3% (Petroicidae) to 47% (Ptilonorhynchidae). We recovered 78 unique mitochondrial lineages from 155 sequences. Related lineages of Haemoproteus were more likely to derive from the same host family than predicted by chance at shallow (average LogDet genetic distance = 0, n = 12, P = 0.001) and greater depths (average distance = 0.014, n = 11, P < 0.001) within the parasite phylogeny. Within two major Haemoproteus subclades identified in a maximum likelihood phylogeny, host-specificity was evident up to parasite genetic distances of 0.029 and 0.007 based on logistic regression. We found no significant host relationship among lineages of Plasmodium by any method of analysis. These results support previous evidence of strong host-family specificity in Haemoproteus and suggest that lineages of Plasmodium are more likely to form evolutionarily-stable associations with novel hosts.

Molecular Ecology