Search USGS⌕ Search

SEARCH · Search USGS

Results for “Bone”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 199 records · Page 11Linked to original sources

Paleoclimate and Amerindians: Evidence from stable isotopes and atmospheric circulation

Two Amerindian demographic shifts are attributed to climate change in the northwest plains of North America: at ???11,000 calendar years before present (yr BP), Amerindian culture apparently split into foothills-mountains vs. plains biomes; and from 8,000-5,000 yr BP, scarce archaeological sites on the open plains suggest emigration during xeric "Altithermal" conditions. We reconstructed paleoclimates from stable isotopes in prehistoric bison bone and relations between weather and fractions of C4 plants in forage. Further, we developed a climate-change model that synthesized stable isotope, existing qualitative evidence (e.g., palynological, erosional), and global climate mechanisms affecting this midlatitude region. Our isotope data indicate significant warming from ???12,400 to 11,900 yr BP, supporting climate-driven cultural separation. However, isotope evidence of apparently wet, warm conditions at 7,300 yr BP refutes emigration to avoid xeric conditions. Scarcity of archaeological sites is best explained by rapid climate fluctuations after catastrophic draining of the Laurentide Lakes, which disrupted North Atlantic Deep Water production and subsequently altered monsoonal inputs to the open plains.

Proceedings of the National Academy of Sciences of↗

Discovery of a unique Ig heavy-chain (IgT) in rainbow trout: Implications for a distinctive B cell developmental pathway in teleost fish

During the analysis of Ig superfamily members within the available rainbow trout (Oncorhynchus mykiss) EST gene index, we identified a unique Ig heavy-chain (IgH) isotype. cDNAs encoding this isotype are composed of a typical IgH leader sequence and a VDJ rearranged segment followed by four Ig superfamily C-1 domains represented as either membrane-bound or secretory versions. Because teleost fish were previously thought to encode and express only two IgH isotypes (IgM and IgD) for their humoral immune repertoire, we isolated all three cDNA isotypes from a single homozygous trout (OSU-142) to confirm that all three are indeed independent isotypes. Bioinformatic and phylogenetic analysis indicates that this previously undescribed divergent isotype is restricted to bony fish, thus we have named this isotype "IgT" (??) for teleost fish. Genomic sequence analysis of an OSU-142 bacterial artificial chromosome (BAC) clone positive for all three IgH isotypes revealed that IgT utilizes the standard rainbow trout VH families, but surprisingly, the IgT isotype possesses its own exclusive set of DH and JH elements for the generation of diversity. The IgT D and J segments and ?? constant (C) region genes are located upstream of the D and J elements for IgM, representing a genomic IgH architecture that has not been observed in any other vertebrate class. All three isotypes are primarily expressed in the spleen and pronephros (bone marrow equivalent), and ontogenically, expression of IgT is present 4 d before hatching in developing embryos. ?? 2005 by The National Academy of Sciences of the USA.

Proceedings of the National Academy of Sciences of↗

Mark retention of calcein in Cisco and Bloater

Since 2012, a multi-agency initiative to restore these native forage species has been under way. Evaluating the restoration success of Cisco Coregonus artedi and Bloater C. hoyi in Lake Ontario waters requires methods to identify stocked fish. However, juvenile Cisco and Bloater are fragile; thus, mass marking techniques that reduce the handling of individual fish are required and have not previously been evaluated. In 2014–2015 we evaluated the usefulness of calcein (SE-MARK) as a marker on bony structures, including the otolith. Juvenile Bloater and Cisco (14, 100, 128 d old) were immersed in a calcein bath at 5,000 mg/L of water for 4 min to apply the chemical marker. Observations of the marking retention were evaluated 8 d following the treatment. All fish immersed in calcein had strong brilliant marks (rating scale 3) on all bony structures including scales, fin rays, jaw bones, and vertebrate. The otolith was the only hard structure that did not show a brilliant marking due to the opaque nature of the structure. Our results suggest that calcein produces a strong discernable mark on hard bony structures of Cisco and Bloater; however, long-term retention needs further study.

Lake Ontario↗

Developmental toxicity of diphenyl ether herbicides in nestling American kestrels

Beginning the day after hatching, American kestrel (Falco sparverius) nestlings were orally dosed for 10 consecutive days with 5 microliters/g of corn oil (controls) or one of the diphenyl ether herbicides (nitrofen, bifenox, or oxyfluorfen) at concentrations of 10, 50, 250, or 500 mg/kg in corn oil. At 500 mg/kg, nitrofen resulted in complete nestling mortality, bifenox in high (66%) mortality, and oxyfluorfen in no mortality. Nitrofen at 250 mg/kg reduced nestling growth as reflected by decreased body weight, crownrump length, and bone lengths including humerus, radiusulna, femur, and tibiotarsus. Bifenox at 250 mg/kg had less effect on growth than nitrofen, but crownrump, humerus, radiusulna, and femur were significantly shorter than controls. Liver weight as a percent of body weight increased with 50 and 250 mg/kg nitrofen. Other manifestations of impending hepatotoxicity following nitrofen ingestion included increased hepatic GSH peroxidase activity in all nitrofentreated groups, and increased plasma enzyme activities for ALT, AST, and LDHL in the 250mg/kg group. Bifenox ingestion resulted in increased hepatic GSH peroxidase activity in the 50and 250mg/kg groups. Nitrofen exposure also resulted in an increase in total plasma thyroxine (T4) concentration. These findings suggest that altricial nestlings are more sensitive to diphenyl ether herbicides than young or adult birds of precocial species.

Journal of Toxicology and Environmental Health↗

Disparate perspectives on evidence from the Cerutti Mastodon site: A reply to Braje et al.

The Perspective editorial by Braje, T., T. D. Dillehay, J. M. Erlandson, S. M. Fitzpatrick, D. K. Grayson, V. T. Holliday, R. L. Kelly, R. G. Klein, D. J. Meltzer, and T. C. Rick (2017. “Were Hominins in California ∼130,000 Years Ago?” PaleoAmerica 3 (3): 200–202) takes issue with our argument [Holen, S. R., T. A. Deméré, D. C. Fisher, R. Fullagar, J. B. Paces, G. T. Jefferson, J. M. Beeton, et al. (2017. “A 130,000-Year-Old Archaeological Site in Southern California, USA.” Nature 544 (7651): 479–483) that the assemblage of bones and stones at the Cerutti Mastodon (CM) site implicates hominin activity in site formation 130,000 years ago. Braje et al. propose instead that features of the CM site can be better explained by geological or other causes unrelated to ancient human activity. However, we contend that their conclusion reflects an incomplete assessment of our evidence. They further propose a standard of evidence at odds with current practice in the philosophy of science, and misuse a commonly quoted aphorism that “extraordinary claims require extraordinary evidence.”

California↗

The importance of physiological ecology in conservation biology

Many of the threats to the persistence of populations of sensitive species have physiological or pathological mechanisms, and those mechanisms are best understood through the inherently integrative discipline of physiological ecology. The desert tortoise was listed under the Endangered Species Act largely due to a newly recognized upper respiratory disease thought to cause mortality in individuals and severe declines in populations. Numerous hypotheses about the threats to the persistence of desert tortoise populations involve acquisition of nutrients, and its connection to stress and disease. The nutritional wisdom hypothesis posits that animals should forage not for particular food items, but instead, for particular nutrients such as calcium and phosphorus used in building bones. The optimal foraging hypothesis suggests that, in circumstances of resource abundance, tortoises should forage as dietary specialists as a means of maximizing intake of resources. The optimal digestion hypothesis suggests that tortoises should process ingesta in ways that regulate assimilation rate. Finally, the cost-of-switching hypothesis suggests that herbivores, like the desert tortoise, should avoid switching food types to avoid negatively affecting the microbe community responsible for fermenting plants into energy and nutrients. Combining hypotheses into a resource acquisition theory leads to novel predictions that are generally supported by data presented here. Testing hypotheses, and synthesizing test results into a theory, provides a robust scientific alternative to the popular use of untested hypotheses and unanalyzed data to assert the needs of species. The scientific approach should focus on hypotheses concerning anthropogenic modifications of the environment that impact physiological processes ultimately important to population phenomena. We show how measurements of such impacts as nutrient starvation, can cause physiological stress, and that the endocrine mechanisms involved with stress can result in disease. Finally, our new syntheses evince a new hypothesis. Free molecules of the stress hormone corticosterone can inhibit immunity, and the abundance of "free corticosterone" in the blood (thought to be the active form of the hormone) is regulated when the corticosterone molecules combine with binding globulins. The sex hormone, testosterone, combines with the same binding globulin. High levels of testosterone, naturally occurring in the breeding season, may be further enhanced in populations at high densities, and the resulting excess testosterone may compete with binding globulins, thereby releasing corticosterone and reducing immunity to disease. This sequence could result in physiological and pathological phenomena leading to population cycles with a period that would be essentially impossible to observe in desert tortoise. Such cycles could obscure population fluctuations of anthropogenic origin. ?? 2006 The Author(s).

Conference Paper↗

Coming of age: Morphometric variation in the hand skeletons of juvenile and adult Lesser Treeshrews (Scandentia: Tupaiidae: Tupaia minor Günther, 1876)

Morphometric analyses of the manus skeleton have proven useful in understanding species limits and morphological divergence among tupaiid treeshrews (Scandentia: Tupaiidae). Specimens in these studies are typically limited to mature individuals with fully erupted permanent dentition, which eliminates potentially confounding variation attributable to age, but can also exclude rare taxa and small island populations that are poorly represented in systematic collections. To determine the real limits associated with including immature animals in such studies, we used multivariate analyses to study sexual and age variation of the manus skeleton within two allopatric populations of the Lesser Treeshrew (Tupaia minor Günther, 1876) from the Malay Peninsula and from Borneo that we treated as separate samples. Individuals were aged using dental eruption of the permanent dentition. We also recorded the degree of epiphyseal fusion of the bones of the manus based on x-rays of study skins. We then tested our ability to distinguish the two populations using a series of discriminant function analyses of hand measurements from samples that included varying proportions of immature individuals and adults. We found no evidence of sexual dimorphism in hand proportions, permitting us to combine females and males in our samples. Epiphyseal fusion of the metacarpals and phalanges typically occurs by the time the third molars have completely erupted, and fusion of the distal epiphyses of the radius and ulna typically occurs by the time the permanent fourth premolars are in place. There is occasional asynchrony between dental age and epiphyseal fusion. In both populations, the hands of most infants and subadults provide morphometric values within the range of variation of adults, although they are typically distributed in the lower part of the adult range and have the potential to bias the sample toward lower mean size. The inclusion of infants and subadults when attempting to discriminate between two taxa generally results in lower rates of correct classifications, although the rates increase as the sample of immature individuals is limited to older subadults. As a general rule, we recommend that infants and subadults continue to be excluded from analyses when exploring taxonomic boundaries among treeshrews. In cases of extremely small sample sizes of adults, however, older subadults—in which the permanent third premolars are erupting or in place—can be used with appropriate caution.

Journal of Mammalogy↗

Skeletal injuries in small mammals: a multispecies assessment of prevalence and location

Wild mammals are known to survive injuries that result in skeletal abnormalities. Quantifying and comparing skeletal injuries among species can provide insight into the factors that cause skeletal injuries and enable survival following an injury. We documented the prevalence and location of structural bone abnormalities in a community of 7 small mammal species inhabiting the White Mountains of New Hampshire. These species differ in locomotion type and levels of intraspecific aggression. Overall, the majority of injuries were to the ribs or caudal vertebrae. Incidence of skeletal injuries was highest in older animals, indicating that injuries accumulate over a lifetime. Compared to species with ambulatory locomotion, those with more specialized (semi-fossorial, saltatorial, and scansorial) locomotion exhibited fewer skeletal abnormalities in the arms and legs, which we hypothesize is a result of a lesser ability to survive limb injuries. Patterns of skeletal injuries in shrews (Soricidae) were consistent with intraspecific aggression, particularly in males, whereas skeletal injuries in rodents (Rodentia) were more likely accidental or resulting from interactions with predators. Our results demonstrate that both the incidence and pattern of skeletal injuries vary by species and suggest that the ability of an individual to survive a specific skeletal injury depends on its severity and location as well as the locomotor mode of the species involved.

Journal of Mammalogy↗

See how they ran: Morphological and functional aspects of skeletons from ancient Egyptian shrew mummies (Eulipotyphla: Soricidae: Crocidurinae)

Animals served important roles in the religious cults that proliferated during the Late (ca. 747–332 BCE) and Greco-Roman periods (332 BCE–CE 337) of ancient Egypt. One result was the interment of animal mummies in specialized necropolises distributed throughout the country. Excavation of a rock-tomb that was re-used during the Ptolemaic Period (ca. 309–30 BCE) for the interment of animal mummies at the Djehuty Site (TT 11-12) near Luxor, Egypt, was carried out in early 2018 by a Spanish-Egyptian team sponsored by the Consejo Superior de Investigaciones Científicas, Madrid. The tomb burned sometime after deposition of the mummies, leaving behind abundant disassociated skeletal remains, primarily of avians, but also including two species of shrews (Soricidae): Crocidura olivieri (Lesson, 1827) and C. religiosa (I. Geoffroy Saint-Hilaire, 1826). To investigate possible intraspecific variation in morphology and locomotor function in these two species during the last two millennia, we measured morphological features of individual postcranial bones from the two archaeological samples and calculated indices that have been used to assess locomotor function. We compared the measurements to those from modern C. olivieri , C. religiosa , and C. suaveolens (Pallas, 1811) using principal components analysis, and we compared locomotor indices to those we calculated for the three modern species of Crocidura and to those from nine species of myosoricine shrews. Osteological features of the postcranial skeleton of conspecific Ptolemaic and modern samples of C. olivieri and C. religiosa are generally similar in character and proportion, and, skeletally, these shrews and modern C. suaveolens are consistent with soricids having a primarily ambulatory locomotor mode. One exception is the deltopectoral crest of the humerus, which appears to be longer in modern C. religiosa. Despite general conservation of form and function, Ptolemaic C. olivieri had larger body size than modern Egyptian populations and were more similar in size to modern C. olivieri nyansae , 1900 from Kenya than to modern C. olivieri olivieri from Egypt.

Luxor↗

Biota dose assessment of small rodents sampled near breccia pipe uranium mines in the Grand Canyon watershed

The biotic exposure and uptake of radionuclides and potential health effects due to breccia pipe uranium mining in the Grand Canyon watershed are largely unknown. This paper describes the use of the RESRAD-BIOTA dose model to assess exposure of small rodents (n = 11) sampled at three uranium mine sites in different stages of ore production (active and postproduction). Rodent tissue and soil concentrations of naturally occurring uranium (234U, 235U, and 238U), thorium (228Th, 230Th, and 232Th), and radium (226Ra) radioisotopes were used in the dose model. The dose assessment results indicated that the potential internal, external, and total doses to rodents were below the US Department of Energy’s biota dose standard of 1 mGy d−1. As expected, tissue concentrations of 238U, 234U, and 230Th were in approximate equilibrium; however, 226Ra results in tissue were 1.25 to 5.75 times greater than 238U, 234U, and 230Th tissue results for 10 out of 11 samples. Soil at the three sites also displayed 226Ra enrichment, so it is likely that the 226Ra enrichment in the rodents was from soil via typical activities (i.e., burrowing, incidental ingestion, bathing, etc.) or by dietary uptake of translocated 226Ra. The results suggest that 226Ra is more mobile in this environment and bioaccumulates in these rodent species (e.g., in bones via the bloodstream). Internal dose accounting suggests that 226Ra is the radionuclide of most concern for rodent exposure and health.

Grand Canyon↗

Forecasting sea otter recolonization: Insights from isotopic analysis of modern and zooarchaeological populations

Retrospective datasets offer essential context for conservation by revealing species’ ecological roles before industrial-era human impacts. We analysed isotopic compositions of pre-industrial and modern sea otters ( Enhydra lutris ) to reconstruct pre-extirpation ecology and offer insights for management. Our study focuses on southeast Alaska (SEAK), where sea otters are recolonizing, and northern Oregon, where translocations are being considered. We measured bulk bone collagen δ 13 C and δ 15 N values and essential amino acid δ 13 C values of extirpated sea otters from archaeological contexts, and bulk isotopic values from vibrissae of modern SEAK sea otters. We compare these results with published isotopic data of potential prey and additional archaeological datasets. In SEAK, our data show pre-industrial sea otter populations consumed infaunal bivalves and used soft-sediment (33%) and kelp forest habitats (67%), with sub-regional variation. We anticipate current populations will expand into this historical niche, and conflict with regional traditional/subsistence bivalve fisheries will persist. In northern Oregon, isotopic data from extirpated sea otters indicate past consumption of low trophic level invertebrates and a stronger reliance on kelp forests (88%) rather than soft-sediment habitats, highlighting the importance of kelp forests for future translocations. Our work exemplifies the value of historical ecology in informing conservation strategies for recovering species.

Alaska, Oregon↗

Nuclear methods applied to uranium geochemistry

Stable and radioactive daughter products produced from nuclear disintegrations of uranium have proved useful in fundamental studies of the geochemistry of uranium in igneous rock and sedimentary environments and in ore deposits. Information gained from geochemical studies of uranium migration has been used to develop models for attempts to date archeological, geological, and oceanographic environments represented by samples of bone, wood, charcoal, continental and marine carbonates, marine sediments, and glacially derived soils. Recent improvements of nuclear instrumentation and techniques allowed accurate measurements of natural radioactive isotopes, and it is now believed that radioactive equilibrium between the long-lived isotopes of the two uranium decay series is more the exception than the rule in nature. It was assumed that the 234U and 238U isotopes were in equilibrium until Thurber confirmed that considerable separation between 234U daughter and 238U parent exists in nature. It now has been documented that the 234U content may range from 60% deficient to 500% in excess relative to 238U. An excess of 15% of 234U isotope in sea water is well documented. A summary of previous work has shown that geochemical fractionation of the radioactive nuclides in 238U and 235U decay series takes place in the hydrologic environment, resulting in depletion of 230Th and 231Pa with respect to their parents, 238U, 234U, and 235U, in water and a complementary enrichment of these daughter nuclides in some sediments. Subsequent assimilation of Uranium, essentially free of radioactive daughters, occurs in some specific types of deposits such as carbonates and phosphates.

IEEE Transactions on Nuclear Science↗

Implementation of digital subtraction angiography with a synchrotron x-ray beam

The intense synchrotron radiation produced by wiggler magnets at electron storage rings provides a new source of x-rays highly suited to iodine K-edge digital subtraction angiography. The monochromaticity and tunability provide maximum sensitivity to intraarterial iodine and virtually eliminate contrast due to soft tissue and bone. Visualization of arteries, in particular the coronary arteries, by peripheral venous injection is possible. A system design, based on tests already performed, is presented.

IEEE Transactions on Nuclear Science↗

Coal and cremation at the Tschudi burn, Chan Chan, Northern Peru

Analyses of a 20-30 cm thick, completely combusted ash at the 25 ?? 70 m Tschudi burn at Chan Chan, northern Peru??, contain 52-55 wt% SiO2, 180-210 ppm zirconium and are consistent with coal ash. Soil geochemistry across the burn showed elevated calcium and phosphorus content, possible evidence for reported human cremation. A calcined, 5 g, 4.5 cm skull fragment recovered from the burn was confirmed as human by protein radioimmunoassay (pRIA). X-ray diffraction showed that the bone had been heated to 520??C. The burn took place c. ad 1312-1438 based on interpretation of a 14C date on carbonized plant tinder. ?? 2008 University of Oxford.

Archaeometry↗

Anemia and mechanism of erythrocyte destruction in ducks with acute Leucocytozoon infections

In the anemia which accompanies infection by Leucocytozoon simondi in Pekin ducks there was a far greater loss of erythrocytes than could be accounted for as a result of direct physical rupture by the parasite. Erythrocyte loss began at the same time the 1st parasites appeared in the blood and was severest just prior to maximum parasitemia. Blood replacement and parasite loss occurred simultaneously. Examination of the spleen and bone marrow revealed that erythrophagocytosis was not the cause of anemia as reported for infections of Plasmodium, Babesia and Anaplasma . An anti-erythrocyte (A-E) factor was found in the serum of acutely infected ducks which agglutinated and hemolyzed normal untreated duck erythrocytes as well as infected cells. This A-E factor appeared when the 1st red cell loss was detected and reached its maximum titer just prior to the greatest red cell loss. Titers of the A-E factor were determined using normal uninfected erythrocytes at temperatures between 4 and 42 C. Cells agglutinated below 25 C and hemolyzed at 37 and 42 C. These results indicated that the A-E factor could be responsible for loss of cells other than those which were infected and could thus produce an excess loss of red cells.

Journal of Protozoology↗

Malignant melanoma of Brown Bullhead (Ameiurus nebulosus) in Lake Memphremagog, Vermont/Quebec

In 2012, brown bullhead ( Ameiurus nebulosus ) with large, raised, black growths were first reported from multiple areas within the Vermont portion of Lake Memphremagog. Subsequent surveys conducted from 2014 to 2017 at two sites within the lake indicated a prevalence of 30% in adult brown bullhead 200 mm and above total length. These lesions ranged from slightly raised smooth black areas to large nodular areas on the body surface and fins and within the oral cavity. Microscopically, these lesions were determined to be malignant melanoma with invasion into surrounding hypodermis, skeletal muscle and bone as well as metastases to gill, ovary and intestine. Liver neoplasms were also observed in 8% of the bullhead collected from Lake Memphremagog in 2015. Neither skin nor liver neoplasms were noted in Ticklenaked Pond, a site used for comparison.

Quebec, Vermont↗

Energetic costs of aquatic locomotion in a subadult polar bear

Most marine mammals rely on swimming as their primary form of locomotion. These animals have evolved specialized morphologies, physiologies, and behaviors that have enabled them to efficiently move through an aquatic environment (Williams 1999 ). Such adaptations include body streamlining, modified plantar surfaces for propulsion, and abilities to remain submerged for extended durations (Williams 1989 ). As a result of these adaptations, many marine mammal species exhibit minimal increases in metabolism at routine swim speeds relative to resting rates (Williams et al . 1992 , 2017 ; Yazdi et al . 1999 ). Contrary to most marine mammals, polar bears ( Ursus maritimus ) rely on walking as their primary form of locomotion. As a consequence, they exhibit little evidence of body streamlining or abilities to remain submerged for extended durations. The longest dive recorded for a polar bear is 3 min and 10 s (Stirling and van Meurs 2015 ), a relatively brief period compared to other marine mammals (Ponganis 2015 ). Nevertheless, polar bears do exhibit large forepaws (DeMaster and Stirling 1981 ), lower and flatter heads (Slater et al . 2010 ), and more dense forelimb bones (Wall 1983 ) relative to other bear species, potentially as adaptations for swimming. Polar bears further exhibit some distinct physiological and behavioral adaptations from other bear species likely as a consequence of their marine existence (Pagano et al . 2018 a ).

Marine Mammal Science↗

Uranium series dating of human skeletal remains from the Del Mar and Sunnyvale sites, California

Uranium series analyses of human bone samples from the Del Mar and Sunnyvale sites indicate ages of 11,000 and 8,300 years, respectively. The dates are supported by internal concordancy between thorium-230 and protactinium-231 decay systems. These ages are significantly younger than the estimates of 48,000 and 70,000 years based on amino acid racemization, and indicate that the individuals could derive from the population waves that came across the Bering Strait during the last sea-level low.

California↗