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Site fidelity as a maladaptive behavior in the Anthropocene

Site fidelity, or the behavior of returning to previously visited locations, has been observed across taxa and ecosystems. By developing familiarity with a particular location, site fidelity provides a range of benefits and is advantageous in stable or predictable environments. However, the Anthropocene is characterized by rates of environmental change that outpace the evolutionary history of extant taxa, which can result in site fidelity becoming maladaptive. Here we outline the theoretical underpinnings for maladaptive site fidelity and synthesize empirical research supporting its occurrence, and examine it in the context of a related concept, ecological traps, whereby organisms exhibit maladaptive behavior in habitat selection. We then discuss adaptive mechanisms that may enable species with site fidelity to continue to persist in the Anthropocene. With ongoing environmental change, researchers and practitioners should expect fidelity-induced ecological traps to become more common, and initiate projects to identify and understand their origins. Such knowledge will help conserve the widespread and ecologically important behavior of site fidelity.

Frontiers in Ecology and the Environment

Introduction: Defining and interpreting ecological disturbances

Within the field of ecology, disturbance can be defined as a physical force, agent, or process, either abiotic or biotic, causing a perturbation or stress, to an ecological component or system, relative to a specified reference state and/or system. Disturbance drive ecosystems, and our understanding of how disturbances interact with biological diversity and scales of space, time, and ecological complexity, have matured over a century of advancement in ecology since early ideas of perturbations and community organization were first formalized. Throughout this book, we approach a set of unifying framing questions for disturbance ecology, including: How can disturbances be categorized in meaningful ways? How do we address scale in disturbance ecology? How does geographic context influence ecological consequences of disturbance, in the near and longer terms? In this introductory chapter, we provide an overview of disturbance ecology and the related topics of diversity and scale that are fundamental to understanding the dynamics of perturbed ecosystems. Subsequently, we outline recent advances in disturbance ecology, which have facilitated greater understanding about dynamic systems and context dependencies. These, in turn, have provided richer insights into the complex manner in which ecosystems change under stress. We survey analytical and methodological advances that are expanding the data flows available to inform disturbance ecology as well as the statistical tools available to investigate disturbance dynamics and ecosystem structure and function. Finally, we lay out four core themes threaded through the remainder of the book: (1) fundamental mechanisms related to ecological theory drive complex system behaviors, including the existence of thresholds; (2) dynamics of ecological disturbance are context-dependent and can be unpredictable; (3) antecedent conditions and the legacies of past disturbances influence contemporary ecosystem dynamics; and (4) natural and anthropogenic disturbances interact in complex ways. Summaries are provided for each of the book’s remaining chapters, highlighting how that material relates to these four core themes. In sum, in this introductory chapter we seek to set a foundation for concepts to ground the remainder of the book. By highlighting constraints in past research and identifying research frontiers, we hope to provide a path forward for advancements in disturbance ecology.

Book chapter

A typology of time-scale mismatches and behavioral interventions to diagnose and solve conservation problems

Ecological systems often operate on time scales significantly longer or shorter than the time scales typical of human decision making, which causes substantial difficulty for conservation and management in socioecological systems. For example, invasive species may move faster than humans can diagnose problems and initiate solutions, and climate systems may exhibit long-term inertia and short-term fluctuations that obscure learning about the efficacy of management efforts in many ecological systems. We adopted a management-decision framework that distinguishes decision makers within public institutions from individual actors within the social system, calls attention to the ways socioecological systems respond to decision makers’ actions, and notes institutional learning that accrues from observing these responses. We used this framework, along with insights from bedeviling conservation problems, to create a typology that identifies problematic time-scale mismatches occurring between individual decision makers in public institutions and between individual actors in the social or ecological system. We also considered solutions that involve modifying human perception and behavior at the individual level as a means of resolving these problematic mismatches. The potential solutions are derived from the behavioral economics and psychology literature on temporal challenges in decision making, such as the human tendency to discount future outcomes at irrationally high rates. These solutions range from framing environmental decisions to enhance the salience of long-term consequences, to using structured decision processes that make time scales of actions and consequences more explicit, to structural solutions aimed at altering the consequences of short-sighted behavior to make it less appealing. Additional application of these tools and long-term evaluation measures that assess not just behavioral changes but also associated changes in ecological systems are needed.

Conservation Biology

Can identifying discrete behavioral groups with individual-based acoustic telemetry advance the understanding of fish distribution patterns?

Identifying patterns of organismal distribution can provide valuable insights for basic and applied marine and coastal ecology because understanding where animals are located is foundational to both research and science-based conservation. Understanding variation in distributional patterns can lead to a better assessment of ecological drivers and an improved ability to predict consequences of natural and altered relationships. Here, our purpose is to explore if quantifying coexisting groups of individual fish predators advances our understanding of field distribution patterns. Toward this end, we quantified locations of 59 acoustically tagged striped bass ( Morone saxatilis) within a 26-stationary unit telemetry receiver array in Plum Island Estuary (PIE), MA, United States. We then used cluster analyses on spatial and temporal-spatial metrics from this dataset to (1) assess if distinct groups of individuals coexisted, (2) quantify group characteristics, and (3) test associations between groups and distribution (e.g., physical site type and region). Based on multiple lines of evidence, we identified four groups of striped bass with different space use patterns that persisted across seasons (summer and fall). Similar-sized striped bass clustered at spatial and temporal scales at which individuals within distinct groups could, and did, physically overlap. In addition, distributional groups were linked to components of physical site type and region suggesting that discrete groups of individuals can interact differently with the environment within the same ecological system. The identification of these distinct groups of individuals creates a baseline from which to explore further ecological implications of grouping behavior for research and conservation in geographically large, temporally dynamic, and spatially heterogeneous marine and coastal environments.

Massachusetts

The future of recreational fisheries: Advances in science, monitoring, management, and practice

Recreational fisheries (RF) are complex social-ecological systems that play an important role in aquatic environments while generating significant social and economic benefits around the world. The nature of RF is diverse and rapidly evolving, including the participants, their priorities and behaviors, and the related ecological impacts and social and economic benefits. RF can lead to negative ecological impacts, particularly through overexploitation of fish populations and spread of non-native species and genotypes through stocking. Hence, careful management and monitoring of RF is essential to sustain these ecologically and socioeconomically important resources. This special issue on recreational fisheries contains diverse research, syntheses, and perspectives that highlight the advances being made in RF research, monitoring, management, and practice, which we summarize here. Co-management actions are rising, often involving diverse interest groups including government and non-government organizations; applying collaborative management practices can help balance social and economic benefits with conservation targets. Technological and methodological advances are improving the ability to monitor biological, social, and economic dynamics of RF, which underpin the ability to maximize RF benefits through management actions. To ensure RF sustainability, much research focuses on the ecological aspects of RF, as well as the development of management and angling practices that reduce negative impacts on fish populations. For example, angler behavior can be influenced to conform to conservation-minded angling practices through regulations, but is often best accomplished through growing bottom-up social change movements. Anglers can also play an important role in fisheries monitoring and conservation, including providing data on fish abundance and assemblages (i.e., citizen science). The increasing impacts that growing human populations are having on the global environment are threatening many of the natural resources and ecosystem services they provide, including valuable RF. However, with careful development of research initiatives, monitoring and management, sustainable RF can generate positive outcomes for both society and natural ecosystems and help solve allocation conflicts with commercial fisheries and conservation.

Fisheries Research

Social-ecological outcomes in recreational fisheries: The interaction of lakeshore development and stocking

Many ecosystems continue to experience rapid transformations due to processes like land use change and resource extraction. A systems approach to maintaining natural resources focuses on how interactions and feedbacks among components of complex social‐ecological systems generate social and ecological outcomes. In recreational fisheries, residential shoreline development and fish stocking are two widespread human behaviors that influence fisheries, yet emergent social‐ecological outcomes from these potentially interacting behaviors remain under explored. We applied a social‐ecological systems framework using a simulation model and empirical data to determine whether lakeshore development is likely to promote stocking through its adverse effects on coarse woody habitat and thereby also on survival of juvenile and adult fish. We demonstrate that high lakeshore development is likely to generate dependency of the ecosystem on the social system, in the form of stocking. Further, lakeshore development can interact with social‐ecological processes to create deficits for state‐level governments, which threatens the ability to fund further ecosystem subsidies. Our results highlight the value of a social‐ecological framework for maintaining ecosystem services like recreational fisheries.

Ecological Applications

Bringing traits back in the equation: A roadmap to understand species redistribution

Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility of trait-based approaches to predict species redistribution under climate change has been called into question. We develop the perspective, supported by evidence, that trait variation, if used carefully can have high potential utility, but that past analyses have in many cases failed to identify an explanatory value for traits by not fully embracing the complexity of species range shifts. First, we discuss the relevant theory linking species traits to range shift processes at the leading (expansion) and trailing (contraction) edges of species distributions and highlight the need to clarify the mechanistic basis of trait-based approaches. Second, we provide a brief overview of range shift–trait studies and identify new opportunities for trait integration that consider range-specific processes and intraspecific variability. Third, we explore the circumstances under which environmental and biotic context dependencies are likely to affect our ability to identify the contribution of species traits to range shift processes. Finally, we propose that revealing the role of traits in shaping species redistribution may likely require accounting for methodological variation arising from the range shift estimation process as well as addressing existing functional, geographical, and phylogenetic biases. We provide a series of considerations for more effectively integrating traits as well as extrinsic and methodological factors into species redistribution research. Together, these analytical approaches promise stronger mechanistic and predictive understanding that can help society mitigate and adapt to the effects of climate change on biodiversity.

Global Change Biology

Animal migration amid shifting patterns of phenology and predation: Lessons from a Yellowstone elk herd

Migration is a striking behavioral strategy by which many animals enhance resource acquisition while reducing predation risk. Historically, the demographic benefits of such movements made migration common, but in many taxa the phenomenon is considered globally threatened. Here we describe a long-term decline in the productivity of elk ( Cervus elaphus ) that migrate through intact wilderness areas to protected summer ranges inside Yellowstone National Park, USA. We attribute this decline to a long-term reduction in the demographic benefits that ungulates typically gain from migration. Among migratory elk, we observed a 21-year, 70% reduction in recruitment and a 4-year, 19% depression in their pregnancy rate largely caused by infrequent reproduction of females that were young or lactating. In contrast, among resident elk, we have recently observed increasing recruitment and a high rate of pregnancy. Landscape-level changes in habitat quality and predation appear to be responsible for the declining productivity of Yellowstone migrants. From 1989 to 2009, migratory elk experienced an increasing rate and shorter duration of green-up coincident with warmer spring–summer temperatures and reduced spring precipitation, also consistent with observations of an unusually severe drought in the region. Migrants are also now exposed to four times as many grizzly bears ( Ursus arctos ) and wolves ( Canis lupus ) as resident elk. Both of these restored predators consume migratory elk calves at high rates in the Yellowstone wilderness but are maintained at low densities via lethal management and human disturbance in the year-round habitats of resident elk. Our findings suggest that large-carnivore recovery and drought, operating simultaneously along an elevation gradient, have disproportionately influenced the demography of migratory elk. Many migratory animals travel large geographic distances between their seasonal ranges. Changes in land use and climate that disparately influence such seasonal ranges may alter the ecological basis of migratory behavior, representing an important challenge for, and a powerful lens into, the ecology and conservation of migratory taxa.

Idaho, Montana, Wyoming

A framework for integrating inferred movement behavior into disease risk models

Movement behavior is an important contributor to habitat selection and its incorporation in disease risk models has been somewhat neglected. The habitat preferences of host individuals affect their probability of exposure to pathogens. If preference behavior can be incorporated in ecological niche models (ENMs) when data on pathogen distributions are available, then variation in such behavior may dramatically impact exposure risk. Here we use data from the anthrax endemic system of Etosha National Park, Namibia, to demonstrate how integrating inferred movement behavior alters the construction of disease risk maps. We used a Maximum Entropy (MaxEnt) model that associated soil, bioclimatic, and vegetation variables with the best available pathogen presence data collected at anthrax carcass sites to map areas of most likely Bacillus anthracis (the causative bacterium of anthrax) persistence. We then used a hidden Markov model (HMM) to distinguish foraging and non-foraging behavioral states along the movement tracks of nine zebra ( Equus quagga ) during the 2009 and 2010 anthrax seasons. The resulting tracks, decomposed on the basis of the inferred behavioral state, formed the basis of step-selection functions (SSFs) that used the MaxEnt output as a potential predictor variable. Our analyses revealed different risks of exposure during different zebra behavioral states, which were obscured when the full movement tracks were analyzed without consideration of the underlying behavioral states of individuals. Pathogen (or vector) distribution models may be misleading with regard to the actual risk faced by host animal populations when specific behavioral states are not explicitly accounted for in selection analyses. To more accurately evaluate exposure risk, especially in the case of environmentally transmitted pathogens, selection functions could be built for each identified behavioral state and then used to assess the comparative exposure risk across relevant states. The scale of data collection and analysis, however, introduces complexities and limitations for consideration when interpreting results.

Etosha National Park

Vectors, hosts, and control measures for Zika virus in the Americas

We examine Zika virus (ZIKV) from an ecological perspective and with a focus on the Americas. We assess (1) the role of wildlife in ZIKV disease ecology, (2) how mosquito behavior and biology influence disease dynamics, and (3) how nontarget species and ecosystems may be impacted by vector control programs. Our review suggests that free-ranging, non-human primates may be involved in ZIKV transmission in the Old World; however, other wildlife species likely play a limited role in maintaining or transmitting ZIKV. In the Americas, a zoonotic cycle has not yet been definitively established. Understanding behaviors and habitat tolerances of Aedes aegypti and Aedes albopictus , two ZIKV competent vectors in the Americas, will allow more accurate modeling of disease spread and facilitate targeted and effective control efforts. Vector control efforts may have direct and indirect impacts to wildlife, particularly invertebrate feeding species; however, strategies could be implemented to limit detrimental ecological effects.

EcoHealth

Fort Collins Science Center: Species and Habitats of Federal Interest

Ecosystem changes directly affect a wide variety of plant and animal species, floral and faunal communities, and groups of species such as amphibians and grassland birds. Appropriate management of public lands plays a crucial role in the conservation and recovery of endangered species and can be a key element in preventing a species from being listed under the Endangered Species Act. The Species and Habitats of Federal Interest Branch of the Fort Collins Science Center (FORT) conducts research on the ecology, habitat requirements, distribution and abundance, population dynamics, and genetics and systematics of many species facing threatened or endangered status or of special concern to resource management agencies. FORT scientists develop reintroduction and restoration techniques, technologies for monitoring populations, and novel methods to analyze data on population trends and habitat requirements. FORT expertise encompasses both traditional and specialized natural resource disciplines within wildlife biology, including population dynamics, animal behavior, plant and community ecology, inventory and monitoring, statistics and computer applications, conservation genetics, stable isotope analysis, and curatorial expertise.

Fact Sheet

Evidence of repeated long-distance movements by lake charr Salvelinus namaycush in Lake Huron

Movements and dispersal distances of acoustically-tagged adult lake charr Salvelinus namaycush were estimated based on detections at acoustic receivers in Lake Huron during 2010–2014. Most lake charr were detected only at receivers proximate to their release location or were not detected at all, but 3–9% of tagged lake charr were detected at receivers located over 100 km from their release location. Several fish made extensive repeated migrations within the lake, some at the scale of the entire main basin. Our observations show that some lake charr individuals repeat a similar pattern each year of moving long distances, and some fish were observed to show annual fidelity to presumed foraging sites in the spring at a spatial scale of approximately 200 km. Our telemetry-based estimates were minimum estimates of dispersal, as the placement of receivers within Lake Huron was not optimal for detection of lake charr and did not cover the majority of the lake. Further study of long-distance movement in lake charr is necessary to fully understand the implications of this behavior to lake charr ecology, population dynamics, and management in the Great Lakes.

Lake Huron

Potential cheatgrass abundance within lightly invaded areas of the Great Basin

Context Anticipating where an invasive species could become abundant can help guide prevention and control efforts aimed at reducing invasion impacts. Information on potential abundance can be combined with information on the current status of an invasion to guide management towards currently uninvaded locations where the threat of invasion is high. Objectives We aimed to support management by developing predictive maps of potential cover for cheatgrass ( Bromus tectorum ), a problematic invader that can transform plant communities. We integrated our predictions of potential abundance with mapped estimates of current cover to quantify invasion potential within lightly invaded areas. Methods We used quantile regression to model cheatgrass abundance as a function of climate, weather, and disturbance, treating outputs as low to high invasion scenarios. We developed a species-specific set of covariates and validated model performance using spatially and temporally independent data. Results Potential cheatgrass abundance was higher in areas that had burned, at low elevations, and when fall germination conditions were more favorable. Our results highlight the extensive areas across the Great Basin where cheatgrass abundance could increase to levels that can alter fire behavior and cause other ecological impacts. Conclusions We predict potential cheatgrass abundance to quantify relative invasion risk. Our model results provide high and low scenarios of cheatgrass abundance to guide resource allocation and planning efforts across shrubland ecosystems of the Great Basin that remain relatively uninvaded. Combining information on an invasive species’ current and potential abundance can yield spatial predictions to guide resource allocation and management action.

California, Idaho, Nevada, Oregon, Utah

Brown Bear (Ursus arctos; North America)

This chapter comprises the following sections: names, taxonomy, subspecies and distribution, descriptive notes, habitat, movements and home range, activity patterns, feeding ecology, reproduction and growth, behavior, parasites and diseases, status in the wild, and status in captivity.

Book chapter

Polar Bear (Ursus maritimus)

This chapter comprises the following sections: names, taxonomy, subspecies and distribution, descriptive notes, habitat, movements and home range, activity patterns, feeding ecology, reproduction and growth, behavior, parasites and diseases, status in the wild, and status in captivity.

Book chapter

Monthly river temperature trends across the US confound annual changes

Climate variations and human modifications of the water cycle continue to alter the Earth's surface water and energy exchanges. It is therefore critical to ascertain how these changes impact water quality and aquatic ecosystem habitat metrics such as river temperatures. Though river temperature trend analyses exist in the literature, studies on seasonal trends in river temperatures across large spatial extents, e.g. the contiguous United States (US), are limited. As we show through both annual and monthly trend analyses for 20 year ( n = 138 sites) and 40 year ( n = 40 sites) periods, annual temperature trends across the US mask extensive monthly variability. While most sites exhibited annual warming trends, these annual trends obscured sub-annual cooling trends at many sites. Monthly trend anomalies were spatially organized, with persistent regional patterns at both reference and human-impacted sites. The largest warming and cooling anomalies happened at human impacted sites and during summer months. Though our analysis points to coherence in trends as well as the overall impact of human activity in driving these patterns, we did not investigate the impact of river temperature observation accuracy on reported trends, an area needed for future work. Overall, these patterns emphasize the need to consider sub-annual behavior when managing the ecological impacts of river temperature throughout lotic networks.

Environmental Research Letters

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus ) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis , is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. As small ectotherms, Sceloporus lizards are particularly vulnerable to climate change, and S. occidentalis has also become an important system for studying the impacts of land use change and urbanization on small vertebrates. Here, we report a new reference genome assembly for S. occidentalis , as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomics strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 608 scaffolds spanning 2,856 Mb, has a contig N50 of 18.9 Mb, a scaffold N50 of 98.4 Mb, and BUSCO completeness score of 98.1% based on the tetrapod gene set. This reference genome will be valuable for understanding ecological and evolutionary dynamics in S. occidentalis , the species status of the California endemic island fence lizard ( S. becki ), and the spectacular radiation of Sceloporus lizards.

California