Live-trapping North American upland game birds
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Special Scientific Report - Wildlife↗
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Book review: Oklahoma Breeding Bird Atlas
The first North American breeding bird atlases were initiated during the 1970s. With atlases completed or ongoing in more than 40 U.S. states and most Canadian provinces, these projects are now familiar to professional ornithologists and amateur birders. This book provides the results of the Oklahoma Breeding Bird Atlas, the data for which were collected during 1997–2001. Its appearance less than 3 years after completing fieldwork is remarkable and everyone associated with its timely publication should be congratulated for their efforts. Review info: Oklahoma Breeding Bird Atlas. By Dan L. Reinking, 2004. ISBN: 0806136146, 528 pp.
The Wilson Bulletin↗
Assemblages of breeding birds as indicators of grassland condition
We developed a measure of biological integrity for grasslands (GI) based on the most influential habitat types in the Prairie Pothole Region of North Dakota. GI is based on proportions of habitat types and the relationships of these habitat types to breeding birds. Habitat types were identified by digital aerial photography, verified on the ground, and quantified using GIS, We then developed an index to GI based on the presence or abundance of breeding bird species. Species abundance data were obtained from 3 min roadside point counts at 889 points in 44, 4050 ha study plots over a 2-year period. Using a modified North American Breeding Bird Survey protocol, species were recorded in each of four quadrants at each point. Fifty species selected for analysis included all grassland species that occurred in at least 15 quadrants and all other bird species that occurred in at least 1 % of quadrants. We constructed preliminary models using data from each of the 2 years, then tested their predictive ability by cross-validation with data from the other year. These cross-validation tests indicated that the index consistently predicted grassland integrity. The final four models (presence and abundance models at 200 and 400 m scales) included only those species that were statistically significant (P ??? 0.05) in all preliminary models. Finally, we interpreted the components of the indices by examining associations between individual species and habitat types. Logistic regression identified 386 statistically significant relationships between species and habitat types at 200 and 400m scales. This method, though labor-intensive, successfully uses the presence of grassland-dependent species and absence of species associated with woody vegetation or cropland to provide an index to grassland integrity. Once regional associations of species with habitat types have been identified, such indices can be applied relatively inexpensively to monitor grassland integrity over large geographic areas. Indices like the ones presented here could be applied widely using bird abundance data that are currently being collected across the United States and southern Canada through the North American Breeding Bird Survey. ?? 2002 Elsevier Science Ltd. All rights reserved.
Ecological Indicators↗
Inferring epidemiologic dynamics from viral evolution: 2014–2015 Eurasian/North American highly pathogenic avian influenza viruses exceed transmission threshold, R0 = 1, in wild birds and poultry in North America
Highly pathogenic avian influenza virus (HPAIV) is a multihost pathogen with lineages that pose health risks for domestic birds, wild birds, and humans. One mechanism of intercontinental HPAIV spread is through wild bird reservoirs, and wild birds were the likely sources of a Eurasian (EA) lineage HPAIV into North America in 2014. The introduction resulted in several reassortment events with North American (NA) lineage low-pathogenic avian influenza viruses and the reassortant EA/NA H5N2 went on to cause one of the largest HPAIV poultry outbreaks in North America. We evaluated three hypotheses about novel HPAIV introduced into wild and domestic bird hosts: (i) transmission of novel HPAIVs in wild birds was restricted by mechanisms associated with highly pathogenic phenotypes; (ii) the HPAIV poultry outbreak was not self-sustaining and required viral input from wild birds; and (iii) reassortment of the EA H5N8 generated reassortant EA/NA AIVs with a fitness advantage over fully Eurasian lineages in North American wild birds. We used a time-rooted phylodynamic model that explicitly incorporated viral population dynamics with evolutionary dynamics to estimate the basic reproductive number ( R 0 ) and viral migration among host types in domestic and wild birds, as well as between the EA H5N8 and EA/NA H5N2 in wild birds. We did not find evidence to support hypothesis (i) or (ii) as our estimates of the transmission parameters suggested that the HPAIV outbreak met or exceeded the threshold for persistence in wild birds ( R 0 > 1) and poultry ( R 0 ≈ 1) with minimal estimated transmission among host types. There was also no evidence to support hypothesis (iii) because R 0 values were similar among EA H5N8 and EA/NA H5N2 in wild birds. Our results suggest that this novel HPAIV and reassortments did not encounter any transmission barriers sufficient to prevent persistence when introduced to wild or domestic birds.
Evolutionary Applications↗
A hierarchical model for estimating change in American Woodcock populations
The Singing-Ground Survey (SGS) is a primary source of information on population change for American woodcock (Scolopax minor). We analyzed the SGS using a hierarchical log-linear model and compared the estimates of change and annual indices of abundance to a route regression analysis of SGS data. We also grouped SGS routes into Bird Conservation Regions (BCRs) and estimated population change and annual indices using BCRs within states and provinces as strata. Based on the hierarchical model?based estimates, we concluded that woodcock populations were declining in North America between 1968 and 2006 (trend = -0.9%/yr, 95% credible interval: -1.2, -0.5). Singing-Ground Survey results are generally similar between analytical approaches, but the hierarchical model has several important advantages over the route regression. Hierarchical models better accommodate changes in survey efficiency over time and space by treating strata, years, and observers as random effects in the context of a log-linear model, providing trend estimates that are derived directly from the annual indices. We also conducted a hierarchical model analysis of woodcock data from the Christmas Bird Count and the North American Breeding Bird Survey. All surveys showed general consistency in patterns of population change, but the SGS had the shortest credible intervals. We suggest that population management and conservation planning for woodcock involving interpretation of the SGS use estimates provided by the hierarchical model.
Journal of Wildlife Management↗
Consistency counts: Modeling the effects of a change in protocol on Breeding Bird Survey counts
Analysis of North American Breeding Bird Survey (BBS) data requires controls for factors that influence detectability of birds along survey routes. Identifying factors that influence the counting process and incorporating them into analyses is a primary means of limiting bias in estimates of population change. Twedt (2015) implemented an alternative counting protocol on operational and non-random BBS survey routes in the southeastern United States. Observers on selected routes employed a time-distance protocol in which they recorded birds in 1-minute intervals and in 2 distance categories. We hypothesized that processing and recording observations using this time-distance protocol could cause observers to count fewer birds relative to observers using the standard protocol. We used a hierarchical log-linear model with a categorical covariate associated with protocol (standard vs time-distance) to assess whether use of the time-distance protocol had a measurable effect on counting birds along BBS routes. We applied this model to BBS data from portions of eight states in which the time-distance protocol was implemented and estimated a protocol effect for 167 bird species. We documented a significant overall effect of the time-distance protocol on observers’ counts of birds. On average, the effect of the time-distance protocol was a 10% decline in count, and 80% of species had lower counts when the time-distance protocol was used on a survey route. However, because the time-distance protocol was only used on a small portion of the operational BBS routes and for a limited time, including the covariate for the time-distance protocol data had insignificant effects on analysis of population change. Although the covariate controlled for the effects of the time-distance protocol in BBS data, the results emphasize the importance of standardization as well as a need to track and, if necessary, control in analyses for changes in counting procedures along BBS routes.
The Condor↗
Monitoring goals and programs of the United States Fish and Wildlife Service
The United States Fish and Wildlife Service coordinates several surveys that collect information on the population status of migratory birds in North America. The North American Breeding Bird Survey is the primary source of population information on nongame birds during the breeding season, and waterfowl surveys are conducted during breeding and wintering seasons. The surveys are international in scope, based upon research into sampling methods for birds, and used in management of migratory birds. The Service also maintains the Bird Banding Laboratory in cooperation with the Canadan Wildlife Service, and supports demographic monitoring of bird populations.
Book chapter↗
Biome-scale spatial patterns of avian abundance reveal proactive conservation opportunities in North American grasslands
North American grassland birds have experienced steeper population declines than any other avian guild, yet conservation efforts remain largely reactive and fragmented. We used nearly four decades of North American Breeding Bird Survey data to identify biome-scale spatial patterns (clustering) of grassland bird abundance for the Great Plains. Our results reveal an ecological core in the north-central Plains where community-level abundance is either increasing by >100% or remains high and stable, providing a strategic roadmap for a “Defend the Core” conservation approach. This approach flips the script from reactive triage centered on isolated population fragments to a proactive strategy of maintaining large-scale ecosystem integrity. Conversely, we found that population losses are more spatially clustered than wins, reflecting the relentless, one-way movement of woody encroachment and agricultural conversion. This asymmetry supports prioritizing intact landscapes, as current restoration rates are often outpaced by the scale of habitat loss. Notably, we found that community-level spatial clustering is a more robust indicator of biome condition than trends of individual flagship species, suggesting that managing for ecosystem integrity provides a more effective multi-species umbrella. Given our results, there is an opportunity for operationalizing a Great Plains Conservation Design that is ecosystem-centric and rooted in the sustainability of the private-land cattle production that maintains these open spaces. By leveraging avian abundance as a biological sensor, managers and producers can deploy a shared vision that matches the spatial scale of the threats, moving from reactive triage to proactive defense of core working grasslands in North America.
Great Plains biome↗
Estimating uncertainty of North American landbird population sizes
An important metric for many aspects of species conservation planning and risk assessment is an estimate of total population size. For landbirds breeding in North America, Partners in Flight (PIF) generates global, continental, and regional population size estimates. These estimates are an important component of the PIF species assessment process, but have also been used by others for a range of applications. The PIF population size estimates are primarily calculated using a formula designed to extrapolate bird counts recorded by the North American Breeding Bird Survey (BBS) to regional population estimates. The extrapolation formula includes multiple assumptions and sources of uncertainty, but there were previously no attempts to quantify this uncertainty in the published population size estimates aside from a categorical data quality score. Using a Monte Carlo approach, we propagated the main sources of uncertainty arising from individual components of the model through to the final estimation of landbird population sizes. This approach results in distributions of population size estimates rather than point estimates. We found the width of uncertainty of population size estimates to be generally narrower than the order-of-magnitude distances between the population size score categories PIF uses in the species assessment process, suggesting confidence in the categorical ranking used by PIF. Our approach provides a means to identify species whose uncertainty bounds span more than one categorical rank, which was not previously possible with the data quality scores. Although there is still room for additional improvements to the estimation of avian population sizes and uncertainty, particularly with respect to replacing categorical model components with empirical estimates, our estimates of population size distributions have broader utility to a range of conservation planning and risk assessment activities relying on avian population size estimates.
Avian Conservation and Ecology↗
Use of seeded exotic grasslands by wintering birds
Despite widespread population declines of North American grassland birds, effects of anthropogenic disturbance on wintering habitat of this guild remain poorly understood. We compared avian abundance and habitat structure in fields planted to the exotic grass Old World bluestem ( Bothriochloa ischaemum ; OWB) to that in native mixed-grass prairie. During winters of 2007–2008 and 2008–2009, we conducted bird and vegetation surveys in six native grass and six OWB fields in Garfield, Grant, and Alfalfa counties, Oklahoma. We recorded 24 species of wintering birds in native fields and 14 species in OWB monocultures. While vegetation structure was similar between field types, abundance of short-eared owls ( Asio flammeus ), northern harriers ( Circus cyaneus ) and Smith’s longspurs ( Calcarius pictus ) was higher in OWB fields during at least one year. The use of OWB fields by multiple species occupying different trophic positions suggested that vegetation structure of OWB can meet habitat requirements of some wintering birds, but there is insufficient evidence to determine if it provides superior conditions to native grasses.
Oklahoma↗
H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 2022
Highly pathogenic avian influenza viruses (HPAIVs) of the A/goose/Guangdong/1/1996 lineage H5 clade 2.3.4.4b continue to have a devastating effect on domestic and wild birds. Full genome sequence analyses using 1369 H5N1 HPAIVs detected in the United States (U.S.) in wild birds, commercial poultry, and backyard flocks from December 2021 to April 2022, showed three phylogenetically distinct H5N1 virus introductions in the U.S. by wild birds. Unreassorted Eurasian genotypes A1 and A2 entered the Northeast Atlantic states, whereas a genetically distinct A3 genotype was detected in Alaska. The A1 genotype spread westward via wild bird migration and reassorted with North American wild bird avian influenza viruses. Reassortments of up to five internal genes generated a total of 21 distinct clusters; of these, six genotypes represented 92% of the HPAIVs examined. By phylodynamic analyses, most detections in domestic birds were shown to be point-source transmissions from wild birds, with limited farm-to-farm spread.
Virology↗
Influence of land use and climate on wetland breeding birds in the Prairie Pothole region of Canada
Bird populations are influenced by a variety of factors at both small and large scales that range from the presence of suitable nesting habitat, predators, and food supplies to climate conditions and land-use patterns. We evaluated the influences of regional climate and land-use variables on wetland breeding birds in the Canada section of Bird Conservation Region 11 (CA-BCR11), the Prairie Potholes. We used bird abundance data from the North American Breeding Bird Survey, land-use data from the Prairie Farm Rehabilitation Administration, and weather data from the National Climatic Data and Information Archive to model effects of regional environmental variables on bird abundance. Models were constructed a priori using information from published habitat associations in the literature, and fitting was performed with WinBUGS using Markov chain Monte Carlo techniques. Both land-use and climate variables contributed to predicting bird abundance in CA-BCR11, although climate predictors contributed the most to improving model fit. Examination of regional effects of climate and land use on wetland birds in CA-BCR11 revealed relationships with environmental covariates that are often overlooked by small-scale habitat studies. Results from these studies can be used to improve conservation and management planning for regional populations of avifauna. ?? 2007 NRC.
Canadian Journal of Zoology↗
Sex Determination of Carolina Wrens (Thryothorus ludovicianus) in the Mississippi Alluvial Valley
I identified sexual dimorphism in wing length (unflattened chord) of Carolina Wrens (Thryothorus ludovicianus) within the central Mississippi Alluvial Valley (northeast Louisiana and west-central Mississippi) and used this difference to assign a sex to captured wrens. Wrens were identified as female when wing length was less than 57.5 mm or male when wing length was greater than 58.5 mm. Verification of predicted sex was obtained from recaptures of banded individuals where sex was ascertained from the presence of a cloacal protuberance or brood patch. Correct prediction of sex was 81% for adult females and 95% for adult males. An alternative model, which categorized wrens with wing lengths of 58 and 59 mm as birds of unknown sex, increased correct prediction of females to 93% but reduced the number of individuals to which sex was assigned. These simple, predictive, wing-length-based models also correctly assigned sex for more than 88% of young (hatching-year) birds.
North American Bird Bander↗
Breeding productivity and adult survival in nongame birds
Populations of many North American land-birds, including forest-inhabiting species that winter in the Neotropics, seem to be declining (Robbins et al. 1989; Terborgh 1989). These declines have been identified through broad-scale, long-term survey programs that identify changes in abundance pf species, but provide little information about causes of changes in abundance or the health of specific populations in different geographic locations. Population health is a measure of a population's ability to sustain itself over time as determined by the balance between birth and death rates. Indices of population size do not always provide an accurate measure of population health because population size can be maintained in unhealthy populations by immigration of recruits from health populations (Pulliam 1988). Poor population health across many populations in a species eventually results in the decline of that species. Early detection of population declines allows managers to correct problems before they are critical and widespread. Demographic data (breeding productivity and adult survival) provide the kind of early warning signal that allows detection of unhealthy populations in terms of productivity or survival problems (Martin and Guepel 1993). In addition, demographic data can help determine whether population declines are the result of low breeding productivity or low survival in migration or winter. Breeding productivity data also can help identify habitat conditions associated with successful and failed breeding attempts. Such information is critical for developing habitat- and land-management practices (Martin 1992). Here, we provide examples of the kinds of information that can be obtained by broad-scale demographic studies.
Book chapter↗
Human-induced contaminant impacts on migratory birds: Lessons from the North American eared grebe ( Podiceps nigricollis )
The effects of aquatic contaminants generated by soda ash mining processes on the North American eared grebe ( Podiceps nigricollis ) population illustrates important issues associated with human-induced habitat degradation on the health of migratory species. Eared grebes have been extensively studied in their staging and breeding habitats, but little is known about their 2- to 3-day migratory periods. During migration, few bodies of water are available to the birds for refuge between freshwater breeding areas in Canada and hypersaline lakes (e.g., Great Salt Lake in Utah or Mono Lake in California) to which they migrate. One geographic refuge area includes a series of "tailings" ponds associated with soda ash mining operations in southwestern Wyoming. The ponds range from 100-1200 acres, with water containing high concentrations of sodium decahydrate (Na 2 CO 3 •10H 2 O). At cool temperatures (generally < 40°F) sodium decahydrate precipitates out of the water and crystallizes on solid objects in the ponds or on the water surface. Bird mortality on these ponds has been recognized since the early 1970's, and the mining companies have developed hazing strategies and rehabilitation programs in order to minimize mortality. In order to determine causes of grebe mortality and devise strategies to reduce mortality, a field epidemiologic investigation was developed with the following objectives: 1) to determine whether eared grebes have quantifiable physiologic abnormalities associated with exposure to soda ash mine pond water; 2) to evaluate physical effects of sodium decahydrate crystallization on grebe survival; 3) to establish cause of death based on necropsy of deceased grebes; 4) to determine long-term survivability of eared grebes after exposure to the pond water; and 5) to evaluate water quality and determine whether aquatic invertebrates are present in the ponds as a possible food source.
California, Utah↗
Roadside versus remote: Is the habitat sampled by the Breeding Bird Survey in Maryland representative of statewide conditions?
The North American Breeding Bird Survey (BBS) has received criticism that the bird habitat sampled along the 24.5 mile long roadside transects may not be proportional to regional totals. If true, trends in bird populations recorded by the BBS may not be sensitive predictors of regional or continental change in songbird abundance. To test whether the approximately 60 BBS routes in Maryland representatively sample the state's habitat, a geographic information system (GIS) database was compiled of significant bird habitat identified from remotely sensed landcover and land-use information (e.g., Multi-Resolution Land Characteristics Consortiumclassified Landsat Thematic Mapper imagery, etc.). These GIS data layers were analyzed to determine the statewide acreage of identified habitats as well as the acreage in each of the major physiographic regions of Maryland. Regional and statewide totals were also extracted for the subsample of habitat within 30 m of the BBS transects. The results of the comparison of regional and statewide habitat totals with the BBS sample showed very low proportional difference for nearly all of the identified habitat parameters. For Maryland and perhaps other urbanizing states, the BBS provides an accurate sample of available songbird habitats.
Book chapter↗
Estimating population trends with a linear model: Technical comments
Controversy has sometimes arisen over whether there is a need to accommodate the limitations of survey design in estimating population change from the count data collected in bird surveys. Analyses of surveys such as the North American Breeding Bird Survey (BBS) can be quite complex; it is natural to ask if the complexity is necessary, or whether the statisticians have run amok. Bart et al. (2003) propose a very simple analysis involving nothing more complicated than simple linear regression, and contrast their approach with model-based procedures. We review the assumptions implicit to their proposed method, and document that these assumptions are unlikely to be valid for surveys such as the BBS. One fundamental limitation of a purely design-based approach is the absence of controls for factors that influence detection of birds at survey sites. We show that failure to model observer effects in survey data leads to substantial bias in estimation of population trends from BBS data for the 20 species that Bart et al. (2003) used as the basis of their simulations. Finally, we note that the simulations presented in Bart et al. (2003) do not provide a useful evaluation of their proposed method, nor do they provide a valid comparison to the estimating- equations alternative they consider.
Condor↗
Clade 2.3.4.4 H5 North American highly pathogenic avian influenza viruses infect, but do not cause clinical signs in American Black Ducks (Anas rubripes)
Highly pathogenic avian influenza virus (HPAIV) from the goose/Guangdong/1996 clade 2.3.4.4 H5 lineage spread from Asia into North America in 2014, most likely by wild bird migrations. Although several variants of the virus were detected, an H5N8 and H5N2 were the most widespread in North American wild birds and domestic poultry. In early 2015, the H5N2 virus spread through commercial poultry in the Midwest and over 50 million chickens and turkeys died or had to be culled. Related H5 HPAIVs are still endemic in much of the Eastern hemisphere. The wild bird species which were involved with dissemination of the virus in North America are not known. Dabbling ducks, especially Mallards, typically have the highest detection rates for AIVs. In order to better characterize the wild avian species which could spread the virus, American Black Ducks (Anas rubripes) (ABDU), which are closely related to Mallards, were challenged with the North American H5N2 and H5N8 index HPAIV isolates: A/Northern Pintail/WA/40964/2014 H5N2 and A/Gyrfalcon/WA/41088/2014 H5N8. Although the ABDU could be infected with low doses of both isolates (≤102 50% egg infectious doses), ducks shed the H5N2 longer than the H5N8 (10 days versus 7 days) and the titers of virus shed were higher. Although there were too few ducks available on which to draw definitive conclusions, this suggests that ABDU could serve as a more efficient reservoir for the H5N2 virus.
Avian Diseases↗