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USGS2013

Modeling rain-fed maize vulnerability to droughts using the standardized precipitation index from satellite estimated rainfall—Southern Malawi case study

During 1990s, disaster risk reduction emerged as a novel, proactive approach to managing risks from natural hazards. The World Bank, USAID, and other international donor agencies began making efforts to mainstream disaster risk reduction in countries whose population and economies were heavily dependent on rain-fed agriculture. This approach has more significance in light of the increasing climatic hazard patterns and the climate scenarios projected for different hazard prone countries in the world. The Famine Early Warning System Network (FEWS NET) has been monitoring the food security issues in the sub-Saharan Africa, Asia and in Haiti. FEWS NET monitors the rainfall and moisture availability conditions with the help of NOAA RFE2 data for deriving food security status in Africa. This paper highlights the efforts in using satellite estimated rainfall inputs to develop drought vulnerability models in the drought prone areas in Malawi. The satellite RFE2 based SPI corresponding to the critical tasseling and silking phases (in the months of January, February, and March) were statistically regressed with drought-induced yield losses at the district level. The analysis has shown that the drought conditions in February and early March lead to most damage to maize yields in this region. The district-wise vulnerabilities to drought were upscaled to obtain a regional maize vulnerability model for southern Malawi. The results would help in establishing an early monitoring mechanism for drought impact assessment, give the decision makers additional time to assess seasonal outcomes, and identify potential food-related hazards in Malawi.

International Journal of Disaster Risk Reduction↗

USGS2024

ShakeAlert® and schools: Incorporating earthquake early warning in school districts in Alaska, California, Oregon, and Washington

The U.S. Geological Survey-managed ShakeAlert® earthquake early warning system is the first public alerting system in the United States to provide rapid mass notification when an earthquake is detected. Although public alert delivery via mobile phones began in California in 2019 followed by Oregon and Washington in 2021, little is known about what might drive widespread implementation in at-risk institutional settings such as schools. For example, there has been limited research on how to best integrate earthquake early warning into existing emergency plans, alert systems, and drills to keep school children and personnel safe in an earthquake. To address this gap, in the spring of 2022, every school district superintendent in Alaska, California, Oregon, and Washington was sent a 15-min online survey. The survey assessed superintendent knowledge of ShakeAlert, preferences for alert messaging, and perceived opportunities and barriers to incorporating the system in schools. The results showed that superintendents had low awareness of ShakeAlert but held positive perceptions of the system's potential to enable life-saving protective actions. A major barrier to adoption included the perceived financial cost of implementing and maintaining the system. There were some statistically significant differences in state responses, and future research could investigate the specific needs of each state based on school district size and composition, hazard exposure, and earthquake experience. Together these findings can help inform targeted strategies to increase ShakeAlert adoption in schools and ultimately improve the safety of school children and staff during earthquakes.

Alaska, California, Oregon, Washington↗

USGS2015

Factors influencing capture of invasive sea lamprey in traps baited with a synthesized sex pheromone component

The sea lamprey, Petromyzon marinus , is emerging as a model organism for understanding how pheromones can be used for manipulating vertebrate behavior in an integrated pest management program. In a previous study, a synthetic sex pheromone component 7α,12α, 24-trihydroxy-5α-cholan-3-one 24-sulfate (3kPZS) was applied to sea lamprey traps in eight streams at a final in-stream concentration of 10 −12 M. Application of 3kPZS increased sea lamprey catch, but where and when 3kPZS had the greatest impact was not determined. Here, by applying 3kPZS to additional streams, we determined that overall increases in yearly exploitation rate (proportion of sea lampreys that were marked, released, and subsequently recaptured) were highest (20–40 %) in wide streams (~40 m) with low adult sea lamprey abundance (<1000). Wide streams with low adult abundance may be representative of low-attraction systems for adult sea lamprey and, in the absence of other attractants (larval odor, sex pheromone), sea lamprey may have been more responsive to a partial sex pheromone blend emitted from traps. Furthermore, we found that the largest and most consistent responses to 3kPZS were during nights early in the trapping season, when water temperatures were increasing. This may have occurred because, during periods of increasing water temperatures, sea lamprey become more active and males at large may not have begun to release sex pheromone. In general, our results are consistent with those for pheromones of invertebrates, which are most effective when pest density is low and when pheromone competition is low.

Journal of Chemical Ecology↗

USGS2008

Volcanic risk perception of young people in the urban areas of Vesuvius: Comparisons with other volcanic areas and implications for emergency management

More than 600 000 people are exposed to volcanic risk in the urban areas near the volcano, Vesuvius, and may need to be evacuated if there is renewed volcanic activity. The success of a future evacuation will strongly depend on the level of risk perception and preparedness of the at-risk communities during the current period of quiescence. The volcanic risk perception and preparedness of young people is of particular importance because hazard education programs in schools have been shown to increase the clarity of risk perception and students often share their knowledge with their parents. In order to evaluate young people's risk perception and preparedness for a volcanic crisis, a multiple choice questionnaire was distributed to 400 high-school students in three municipalities located close to the volcano. The overall results suggest that despite a 60-year period of quiescence at Vesuvius, the interviewed students have an accurate perception of the level of volcanic risk. On the other hand, the respondents demonstrate a clear lack of understanding of volcanic processes and their related hazards. Also, the interviewed students show high levels of fear, poor perceived ability to protect themselves from the effects of a future eruption, and insufficient knowledge of the National Emergency Plan for Vesuvian Area (NEPVA). The latter result suggests that in comparison with volcanic crises in other regions, during a future eruption of Vesuvius, there may not be enough time to educate the large number of people living near the volcano about how to appropriately respond. The inadequate risk education and preparedness of respondents implies that a strong effort is needed to improve communication strategies in order to facilitate successful evacuations. Therefore, it is important to take advantage of the present period of quiescence at Vesuvius to improve the accuracy of risk perception of youth in local communities. ?? 2008.

Journal of Volcanology and Geothermal Research↗

USGS2019

Invertebrate prey contributions to juvenile Coho Salmon diet from riparian habitats along three Alaska streams: Implications for environmental change

Stream fish rely on a mix of terrestrial and aquatic prey sources. While the importance of terrestrial invertebrates as a food source for stream fish is well documented, the role of aquatic insects that emerge from the stream as winged adult insects (aquatic winged adults) and return to the stream as prey is less understood. In this study we determined the proportion of total diet for stream-rearing juvenile Coho Salmon ( Oncorhynchus kisutch) that is derived from terrestrial and aquatic winged adult invertebrates which enter the stream from riparian habitats and consider how those cross-ecosystem prey contributions vary based on riparian habitat type. Study reaches were identified in three streams within the Kenai River watershed of Alaska that were representative of habitats found throughout the region and riparian vegetation was classified into grass/sedge, shrub and tree types using LiDAR. Juvenile Coho Salmon stomach contents were sampled seasonally in study reaches over a two-year period and ingested invertebrates were identified by taxa, life stage and origin. Our results showed that aquatic winged adult prey contributions to juvenile salmon diet were significantly lower in the grass/sedge study reach, and cross-ecosystem invertebrate prey represented a significantly higher proportion of juvenile salmon diet in the tree study reach. Invertebrate prey in the grass/sedge reach were composed primarily of the larval life stage of aquatic winged adults. These results suggest that change in riparian vegetation from tree/shrub to grass/sedge along Kenai streams as projected by regional climate change models, or that results from anthropogenic modification, will likely lead to lower availability of cross-ecosystem prey for stream fish. Management of riparian buffers along streams to preserve or increase occurrence of trees and shrubs is likely to help mitigate impacts of those possible changes.

Alaska↗

USGS2020

RestoreNet: An emerging restoration network reveals controls on seeding success across dryland ecosystems

Drylands are Earth's largest terrestrial biome and support one‐third of the global population. However, they are also highly vulnerable to land degradation. Despite widespread demand for dryland restoration and rehabilitation, little information is available to help land managers effectively re‐establish native perennial vegetation across drylands. RestoreNet is an emerging dryland restoration network that systematically tests revegetation techniques across environmental gradients. Using the RestoreNet experimental framework, we tested the effectiveness of restoration treatments (i.e. ConMod nurse plant structures, mulch, pits) that increase soil moisture and seed mixes with different climatic niches to achieve revegetation goals. Across sites, seedling recruitment was consistently influenced by treatment and seed mix type. Pit and mulch treatments increased total seedling density, with pits promoting the highest seeded species recruitment while limiting non‐native species establishment. Seeding increased total seedling density regardless of seed mix type, but cooler‐adapted seed mixes promoted greater seeded species density and resulted in lower density of unseeded (non‐native) species relative to warmer‐adapted mixes. Seedling recruitment was also controlled by the temporal and environmental context of restoration with the positive effect of high precipitation greatest in the weeks immediately following seeding. Above‐average precipitation during the study period across most of the sites may partially explain why the highest seeded species recruitment occurred in pit treatments and seed mixes with cooler, wetter niche requirements. Synthesis and applications . Results from the dryland restoration network, RestoreNet help to better understand variation in seeding and restoration treatment success across space and time in drylands. Relationships between restoration practices and environmental conditions in our study suggest the importance of anticipatory restoration strategies that forecast seasonal and sub‐seasonal weather conditions and select plant species with climate niche requirements appropriate for current and future climate conditions. This information is critical to land managers tasked with improving ecosystem conditions across degraded dryland regions.

Arizona↗

USGS2014

Effects of distributed and centralized stormwater best management practices and land cover on urban stream hydrology at the catchment scale

Urban stormwater runoff remains an important issue that causes local and regional-scale water quantity and quality issues. Stormwater best management practices (BMPs) have been widely used to mitigate runoff issues, traditionally in a centralized manner; however, problems associated with urban hydrology have remained. An emerging trend is implementation of BMPs in a distributed manner (multi-BMP treatment trains located on the landscape and integrated with urban design), but little catchment-scale performance of these systems have been reported to date. Here, stream hydrologic data (March, 2011–September, 2012) are evaluated in four catchments located in the Chesapeake Bay watershed: one utilizing distributed stormwater BMPs, two utilizing centralized stormwater BMPs, and a forested catchment serving as a reference. Among urban catchments with similar land cover, geology and BMP design standards (i.e. 100-year event), but contrasting placement of stormwater BMPs, distributed BMPs resulted in: significantly greater estimated baseflow, a higher minimum precipitation threshold for stream response and maximum discharge increases, better maximum discharge control for small precipitation events, and reduced runoff volume during an extreme (1000-year) precipitation event compared to centralized BMPs. For all catchments, greater forest land cover and less impervious cover appeared to be more important drivers than stormwater BMP spatial pattern, and caused lower total, stormflow, and baseflow runoff volume; lower maximum discharge during typical precipitation events; and lower runoff volume during an extreme precipitation event. Analysis of hydrologic field data in this study suggests that both the spatial distribution of stormwater BMPs and land cover are important for management of urban stormwater runoff. In particular, catchment-wide application of distributed BMPs improved stream hydrology compared to centralized BMPs, but not enough to fully replicate forested catchment stream hydrology. Integrated planning of stormwater management, protected riparian buffers and forest land cover with suburban development in the distributed-BMP catchment enabled multi-purpose use of land that provided esthetic value and green-space, community gathering points, and wildlife habitat in addition to hydrologic stormwater treatment.

Journal of Hydrology↗

USGS2018

Determinants of Pseudogymnoascus destructans within bat hibernacula: Implications for surveillance and management of white-nose syndrome

Fungal diseases are an emerging global problem affecting human health, food security and biodiversity. Ability of many fungal pathogens to persist within environmental reservoirs can increase extinction risks for host species and presents challenges for disease control. Understanding factors that regulate pathogen spread and persistence in these reservoirs is critical for effective disease management. White-nose syndrome (WNS) is a disease of hibernating bats caused by Pseudogymnoascus destructans ( Pd ), a fungus that establishes persistent environmental reservoirs within bat hibernacula, which contribute to seasonal disease transmission dynamics in bats. However, host and environmental factors influencing distribution of Pd within these reservoirs are unknown. We used model selection on longitudinally collected field data to test multiple hypotheses describing presence–absence and abundance of Pd in environmental substrates and on bats within hibernacula at different stages of WNS. First detection of Pd in the environment lagged up to 1 year after first detection on bats within that hibernaculum. Once detected, the probability of detecting Pd within environmental samples from a hibernaculum increased over time and was higher in sediment compared to wall surfaces. Temperature had marginal effects on the distribution of Pd . For bats, prevalence and abundance of Pd were highest on Myotis lucifugus and on bats with visible signs of WNS. Synthesis and applications . Our results indicate that distribution of Pseudogymnoascus destructans ( Pd ) within a hibernaculum is driven primarily by bats with delayed establishment of environmental reservoirs. Thus, collection of samples from Myotis lucifugus , or from sediment if bats cannot be sampled, should be prioritized to improve detection probabilities for Pd surveillance. Long-term persistence of Pd in sediment suggests that disease management for white-nose syndrome should address risks of sustained transmission from environmental reservoirs.

Journal of Applied Ecology↗

USGS2016

Effects of haying on breeding birds in CRP grasslands

The Conservation Reserve Program (CRP) is a voluntary program that is available to agricultural producers to help protect environmentally sensitive or highly erodible land. Management disturbances of CRP grasslands generally are not allowed unless authorized to provide relief to livestock producers during severe drought or a similar natural disaster (i.e., emergency haying and grazing) or to improve the quality and performance of the CRP cover (i.e., managed haying and grazing). Although CRP grasslands may not be hayed or grazed during the primary bird-nesting season, these disturbances may have short-term (1 yr after disturbance) and long-term (≥2 yr after disturbance) effects on grassland bird populations. We assessed the effects of haying on 20 grassland bird species in 483 CRP grasslands in 9 counties of 4 states in the northern Great Plains, USA between 1993 and 2008. We compared breeding bird densities (as determined by total-area counts) in idle and hayed fields to evaluate changes 1, 2, 3, and 4 years after haying. Haying of CRP grasslands had either positive or negative effects on grassland birds, depending on the species, the county, and the number of years after the initial disturbance. Some species (e.g., horned lark [ Eremophila alpestris ], bobolink [ Dolichonyx oryzivorus ]) responded positively after haying, and others (e.g., song sparrow [ Melospiza melodia ]) responded negatively. The responses of some species changed direction as the fields recovered from haying. For example, densities for common yellowthroat ( Geothlypis trichas ), sedge wren ( Cistothorus platensis ), and clay-colored sparrow ( Spizella pallida ) declined the first year after haying but increased in the subsequent 3 years. Ten species showed treatment × county interactions, indicating that the effects of haying varied geographically. This long-term evaluation on the effects of haying on breeding birds provides important information on the strength and direction of changes in bird populations following a disturbance. Results from this study can help guide management of CRP and other grasslands and inform future agricultural programs that address biomass energy production. © 2016 This article is a U.S. Government work and is in the public domain in the USA.

Minnesota, Montana, North Dakota, South Dakota↗

USGS2018

Decision making for mitigating wildlife diseases: From theory to practice for an emerging fungal pathogen of amphibians

Conservation science can be most effective in its decision‐support role when seeking answers to clearly formulated questions of direct management relevance. Emerging wildlife diseases, a driver of global biodiversity loss, illustrate the challenges of performing this role: in spite of considerable research, successful disease mitigation is uncommon. Decision analysis is increasingly advocated to guide mitigation planning, but its application remains rare. Using an integral projection model, we explored potential mitigation actions for avoiding population declines and the ongoing spatial spread of the fungus Batrachochytrium salamandrivorans ( Bsal ). This fungus has recently caused severe amphibian declines in north‐western Europe and currently threatens Palearctic salamander diversity. Available evidence suggests that a Bsal outbreak in a fire salamander ( Salamandra salamandra ) population will lead to its rapid extirpation. Treatments such as antifungals or probiotics would need to effectively interrupt transmission (reduce probability of infection by nearly 90%) in order to reduce the risk of host extirpation and successfully eradicate the pathogen. Improving the survival of infected hosts is most likely to be detrimental as it increases the potential for pathogen transmission and spread. Active removal of a large proportion of the host population has some potential to locally eradicate Bsal and interrupt its spread, depending on the presence of Bsal reservoirs and on the host's spatial dynamics, which should therefore represent research priorities. Synthesis and applications . Mitigation of Batrachochytrium salamandrivorans epidemics in susceptible host species is highly challenging, requiring effective interruption of transmission and radical removal of host individuals. More generally, our study illustrates the advantages of framing conservation science directly in the management decision context, rather than adapting to it a posteriori .

Journal of Applied Ecology↗

USGS2014

Modeling vegetation heights from high resolution stereo aerial photography: an application for broad-scale rangeland monitoring

Vertical vegetation structure in rangeland ecosystems can be a valuable indicator for assessing rangeland health and monitoring riparian areas, post-fire recovery, available forage for livestock, and wildlife habitat. Federal land management agencies are directed to monitor and manage rangelands at landscapes scales, but traditional field methods for measuring vegetation heights are often too costly and time consuming to apply at these broad scales. Most emerging remote sensing techniques capable of measuring surface and vegetation height (e.g., LiDAR or synthetic aperture radar) are often too expensive, and require specialized sensors. An alternative remote sensing approach that is potentially more practical for managers is to measure vegetation heights from digital stereo aerial photographs. As aerial photography is already commonly used for rangeland monitoring, acquiring it in stereo enables three-dimensional modeling and estimation of vegetation height. The purpose of this study was to test the feasibility and accuracy of estimating shrub heights from high-resolution (HR, 3-cm ground sampling distance) digital stereo-pair aerial images. Overlapping HR imagery was taken in March 2009 near Lake Mead, Nevada and 5-cm resolution digital surface models (DSMs) were created by photogrammetric methods (aerial triangulation, digital image matching) for twenty-six test plots. We compared the heights of individual shrubs and plot averages derived from the DSMs to field measurements. We found strong positive correlations between field and image measurements for several metrics. Individual shrub heights tended to be underestimated in the imagery, however, accuracy was higher for dense, compact shrubs compared with shrubs with thin branches. Plot averages of shrub height from DSMs were also strongly correlated to field measurements but consistently underestimated. Grasses and forbs were generally too small to be detected with the resolution of the DSMs. Estimates of vertical structure will be more accurate in plots having low herbaceous cover and high amounts of dense shrubs. Through the use of statistically derived correction factors or choosing field methods that better correlate with the imagery, vegetation heights from HR DSMs could be a valuable technique for broad-scale rangeland monitoring needs.

California;Nevada↗

USGS2020

Identifying important military installations for continental-scale conservation of marsh bird breeding habitat

Degradation of wetland ecosystems has negatively impacted many species, perhaps none more so than marsh birds that breed in vegetative emergent wetlands throughout North America. The U.S. Department of Defense manages approximately 29 million acres of land within the continental U.S., and many military installations contain wetland complexes that may be important for wetland birds. Thus, failure to adequately manage habitat for marsh birds could result in species extirpations and additional listings under the Endangered Species Act, and may result in regulatory burdens that reduce military readiness. We conducted spatial analyses to identify important breeding habitat on > 500 military installations for 12 species of marsh birds, with the goal of identifying installations that are, and are not, likely to harbor breeding habitat for each species. We also sought to assess the local value of military installations for species of greatest concern by comparing habitat suitability within installations to that in areas directly adjacent to those sites. We built range-wide, spatially-explicit models of species distribution to project suitability of breeding habitat for marsh birds within and adjacent to military installations. Our results demonstrate that installations with the best marsh bird habitat are geographically aggregated (both among and within species), primarily at sites along the eastern seaboard and within the southern U.S. In addition, only a few sites appear to contain high-quality habitat for most species. Five or fewer sites contained most of the high-quality habitat for 9 of 12 species, whereas most of the high-quality habitat for remaining species was found at ≤ 10 sites. This work fills an information gap regarding the distribution of breeding habitat for marsh birds on military lands across the U.S., and should facilitate both strategic conservation of habitat over broad scales and the integration of marsh birds into management efforts at the site level. Our analyses also identify installations that are not likely to harbor breeding habitat for priority species, and thus should help minimize conflicts between needs of the military and marsh-bird conservation.

Continental United States↗

USGS2015

Host–parasite behavioral interactions in a recently introduced, whooping crane population

The whooping crane Grus americana has a long conservation history, but despite multiple attempts across North America, introduction success is lacking. Recently introduced, captively reared whooping cranes have had periods of poor reproductive performance in central Wisconsin that sometimes coincided with black fly (Diptera: Simuliidae) emergences. Sandhill crane Grus canadensis reproductive performance in central Wisconsin is approximately double that of whooping cranes. We used comfort behaviors as a measure of black fly harassment to infer whether behavioral differences existed between nesting sandhill cranes and nesting whooping cranes and between successful and unsuccessful whooping crane pairs. To further explore the interaction between black flies and incubating whooping cranes, we examined differences in behaviors between incubating birds and their off-nest mates. Compared to their off-nest mates, incubating whooping cranes exhibited elevated comfort behaviors, suggesting a bird at a nest may experience greater harassment from black flies. Sandhill cranes had elevated head-flicks over whooping cranes. Whooping cranes exhibited more head-rubs than sandhill cranes, and successful whooping crane pairs had elevated head-rubs over pairs that deserted their nests. Behavioral differences between sandhill cranes and whooping cranes as well as differences in reproductive performance, could be explained by exposure to local breeding conditions. Whereas sandhill cranes have nested in the area for hundreds, if not thousands, of years, whooping cranes were only recently introduced to the area. Behavioral differences between the species as well as those between successful and unsuccessful whooping crane pairs could also be explained by the effect of captive exposure, which could affect all whooping crane introductions.

Wisconsin↗

USGS2020

Improving the ability to include freshwater wetland plants in process-based models

Considerable effort and resources have been placed into conservation programs designed to reduce or alleviate negative environmental effects of crop production and into evaluation of the benefits of these programs. Wetlands are an important source of ecosystem services, but modeling wetland plants is an emerging science. To date, wetland plant growth has not been explicitly accounted for in ecosystem service models that quantify conservation program effects. As part of an effort to more accurately simulate wetland plants within process-based models, we expanded upon plant growth data collected in an earlier effort with additional sampling at two of four previously sampled areas, and included a fifth sampling site. We then used data from the five sites spanning five years as wetland plant parameters at both the species and functional group levels for the Agricultural Land Management Alternative with Numerical Assessment Criteria (ALMANAC) model. In addition to individual species, modelers are interested in functional groups representing a collection of species because it is unrealistic to model every species occurring in an ecosystem. ALMANAC simulations were completed at three sites for both individual wetland plant species and functional groups. At each site, simulated plant yields were within 1 Mg ha –1 (±7%) of measured values ( r 2 = 0.99). Multisite species simulated yields were within 37% of measured values ( r 2 = 0.95). Functional groups performed as well as individual species simulations. Functional group simulated yields were within 1 Mg ha –1 (±5%) of measured yields. Plant growth is a major component of these wetland ecosystems, and ALMANAC verified wetland plant parameters support more accurate assessments of conservation programs and practices on the influence of wetland ecosystems embedded within agricultural fields. The improved plant parameters we provide here will be transferred to other process-based models that focus on other ecosystem components such as soil and water effects, facilitating wetland evaluations across the United States and elsewhere.

California, Delaware, Maryland, North Dakota, Texa↗

USGS2026

Sentinel-2 for chlorophyll-a water quality monitoring: A review of validation evidence and application potential

Water quality monitoring is integral to preserving the health of freshwater ecosystems, and satellite remote sensing has emerged as one monitoring method. Sentinel-2, in particular, has been valuable for water quality monitoring due to its 5-day global temporal revisit time and spatial resolution that ranges from 10 to 60 metres. Sentinel-2 can be used to measure and monitor chlorophyll-a, which historically has been used as an indicator of water quality, eutrophication and harmful algal blooms. Our goal was to review aquatic chlorophyll-a Sentinel-2 research to assess the types of validation evidence reported. Validation evidence is defined here as the set of information key to assessing algorithm performance, and include the spatial and temporal scales of satellite validation, reported in situ sampling method context information, demonstration of validation results through plots, and appropriate algorithm performance metrics. We highlight how the body of literature collectively contributes to advancing a national scale chlorophyll-a product that could support future resource management applications. Our review of 122 published studies indicated that much of the validation evidence corresponded to early stages, as defined by the NASA data maturity framework, due to a limited focus on individual lakes and limited detail on methodology for reproducibility. Prioritizing data accessibility for both in situ data and satellite workflows used in published studies; reporting methods with transparency and consistency; and using standard algorithm performance metrics could provide a consistent framework to support and enhance the utility of satellite inland water quality research. These three quality assurance mechanisms can promote effective evaluation of approaches for remote sensing of chlorophyll-a. Adopting these quality criteria could enable the integration of validation evidence from multiple studies, supporting more spatially and temporally representative products that would advance these approaches towards maturation for broader application.

International Journal of Remote Sensing↗

USGS2017

Comparing efficiency of American Fisheries Society standard snorkeling techniques to environmental DNA sampling techniques

Analysis of environmental DNA (eDNA) is an emerging technique used to detect aquatic species through water sampling and the extraction of biological material for amplification. Our study compared the efficacy of eDNA methodology to American Fisheries Society (AFS) standard snorkeling surveys with regard to detecting the presence of rare fish species. Knowing which method is more efficient at detecting target species will help managers to determine the best way to sample when both traditional sampling methods and eDNA sampling are available. Our study site included three Navajo Nation streams that contained Navajo Nation Genetic Subunit Bluehead Suckers Catostomus discobolus and Zuni Bluehead Suckers C. discobolus yarrowi . We first divided the entire wetted area of streams into consecutive 100-m reaches and then systematically selected 10 reaches/stream for snorkel and eDNA surveys. Surface water samples were taken in 10-m sections within each 100-m reach, while fish presence was noted via snorkeling in each 10-m section. Quantitative PCR was run on each individual water sample in quadruplicate to test for the presence or absence of the target species. With eDNA sampling techniques, we were able to positively detect both species in two out of the three streams. Snorkeling resulted in positive detection of both species in all three streams. In streams where the target species were detected with eDNA sampling, snorkeling detected fish at 11–29 sites/stream, whereas eDNA detected fish at 3–12 sites/stream. Our results suggest that AFS standard snorkeling is more effective than eDNA for detecting target fish species. To improve our eDNA procedures, the amount of water collected and tested should be increased. Additionally, filtering water on-site may improve eDNA techniques for detecting fish. Future research should focus on standardization of eDNA sampling to provide a widely operational sampling tool.

Arizona, New Mexico↗

USGS2022

Ophidiomycosis is related to seasonal patterns of reproduction, ecdysis, and thermoregulatory behavior in a free-living snake species

Informed and effective management of emerging infectious diseases can be improved by a clear understanding of host–pathogen–environment interactions. Impacts of the seasonal environment on pathogen dynamics and host responses are poorly described in most reptile host–fungal pathogen systems. Here, we describe seasonal patterns of ophidiomycosis, a disease caused by the fungus Ophidiomyces ophidiicola ( Oo ), in a population of pygmy rattlesnakes, Sistrurus miliarius , in central Florida. We used field observations of gross clinical signs of disease in combination with qPCR on skin swabs to examine the seasonal prevalence of Oo and patterns of clinical presentation in hosts. We monitored thermoregulatory behaviors, ecdysis, and reproductive status in free-living snakes to examine seasonal associations between infection and host coping responses. Both the prevalence of Oo and clinical signs of disease varied strongly with the season (winter high and summer low). In both seasons, the presence of clinical signs was a strong predictor of the presence of Oo as identified by qPCR on skin swabs (78% probability across seasons). Snakes with clinical signs of disease were more likely to be observed exhibiting thermoregulatory behavior or in ecdysis compared to non-clinical snakes across seasons. The prevalence of Oo was not significantly different in pregnant snakes compared to other reproductive categories, but pregnant females were less likely to exhibit clinical signs of disease compared to males. Our results highlight strong seasonal patterns in both host clinical signs and Oo prevalence and support the efficacy of using gross clinical signs of disease in combination with qPCR on skin swabs to assess disease dynamics in free-living snakes. We also identify ecdysis and thermoregulatory behaviors as components of the seasonal disease-coping response and highlight the need to examine these behaviors as potential drivers of seasonal infection outcomes in reptiles afflicted with fungal pathogens.

Journal of Zoology↗

USGS2025

Ecovoltaic solar energy development effects to microclimate, temperature, and soil moisture in panel array interspaces in a warm desert

Solar energy development is increasing in warm deserts of the southwestern United States, and ecovoltaics has emerged as an approach to maintain ecosystem function within solar facilities while meeting increasing regional energy demands. The Solar Gemini Project, located in the northeastern Mojave Desert, USA, is one of largest photovoltaic facilities incorporating an ecovoltaics approach, including novel installation practices to reduce disturbance to soil and vegetation and solar tracking bifacial photovoltaic panels to maximize energy generation. To further understand the influence of the facility on environmental conditions, we compared microclimate, temperature, and soil moisture in bare soil interspaces between panel arrays inside the facility to undisturbed desert in nearby areas outside the facility from June 2023–February 2025. Our comparisons included different seasons (summer versus winter), soil depth (shallow versus deep), and facility operation (inactive versus active panels with solar-tracking). We found lower solar radiation, wind speed, and evaporative demand inside the facility compared to outside the facility, with greater differences when panels were actively tracking. When panels were active, air temperature inside and outside the facility was similar on average, but was higher inside the facility during the day and lower at night. Soil surface temperature was lower inside the facility due to panel shading in the morning and evening, whereas soil temperature (0–15 cm) was consistently higher inside the facility. Soil moisture was higher inside the facility and did not drop to the low levels observed outside the facility. In total, we found lower evaporative demand, less heat loading, and higher soil moisture inside the Gemini facility, potentially benefitting flora and fauna in the harsh desert landscape. Yet, we also found daytime increases in air and soil surface temperature inside the facility, and persistent increases to soil temperature. These findings highlight the potentially positive and negative environmental changes associated with ecovoltaics solar energy development in warm deserts and provide evidence that can inform the optimization of solar photovoltaics design and management.

Nevada↗