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A data exchange standard for wadeable stream habitat monitoring data

Data from wadeable streams collected by monitoring programs are used to assess watershed condition status and trends. Federally managed programs collect a suite of similar habitat measurements using compatible methods and produce individual program datasets for their prescribed geographic and temporal range. We identified four programs that produce similar data: the Bureau of Land Management Assessment, Inventory, and Monitoring lotic division, the U.S. Environmental Protection Agency National Aquatic Resource Surveys National Rivers and Streams Assessment survey section, the Federal interagency Aquatic and Riparian Effectiveness Monitoring Program, and the PacFish/InFish Biological Opinion Monitoring Program. Their datasets answer agency-specific management questions and fulfill reporting requirements, but the datasets are not released in full, or at all, and in some cases, there was no method to integrate data from the four programs to provide data at a larger spatial scale. The Pacific Northwest Aquatic Monitoring Partnership (PNAMP) led a working group of experts from the four monitoring programs to determine data compatibility, develop a Stream Habitat Metrics Integration (SHMI) data exchange standard, and integrate compatible wadeable stream data. The resulting SHMI data exchange standard contains a data mapping file used to transform data from the source program data to a conformed format based on a controlled vocabulary. After extensive discussions assessing and comparing program collection and analyses methods, the working group found 26 stream habitat metrics to be sufficiently comparable to be integrated into a meaningful dataset. Furthermore, a subset of PIBO MP data previously available only by request and AREMP data available only as a proprietary ESRI ArcGIS geodatabase were made publicly available in non-proprietary formats via the integrated SHMI dataset. A selection of data from the four programs determined to be compatible among 14 datasets were filtered, transformed, standardized, and combined using R code to create the integrated SHMI dataset containing about 12,000 locations, 19,000 events, and 200,000 measurements from 2000 to 2022. This report describes the SHMI data exchange standard and its development, the metric compatibility assessment, and the data integration process, so that others may reuse the SHMI data exchange standard and its components as well as the data integration processes.

Techniques and Methods

Dynamics of the recovery of the western Lake Erie walleye (Stizostedion vitreum vitreum) stock

After its 1957 collapse under intensive fishing and environmental stresses, the walleye (Stizostedion vitreum vitreum) stock of western Lake Erie remained low throughout the 1960s. A moratorium on both sport and commercial fishing, resulting from the 1970 discovery of mercury concentrations in walleye flesh, provided an opportunity for the development of an international interagency management plan. The quota management plan developed depended on sequential projection of the fishable stock on the basis of estimated annual recruitment and reports of total withdrawals from the stock. The fishery reopened gradually and quota management (including allocation among jurisdictions) was implemented in 1976. The stock, which had been gradually increasing as a result of relatively strong year-classes produced in 1970, 1972, and 1974, responded well to limited exploitation and produced a record year-class in 1977. Quotas were exceeded in 1978-80, but the stock continued to improve to the extent that the recommended rate of exploitation was increased in 1980 and again in 1981. As the population expanded, growth began to decline; the decline became apparent in young-of-the-year in the early 1970s and in older walleyes in the late 1970s. This trend toward progressively slower growth, which continued in the 1977 and subsequent year-classes, was accompanied by an increase in length at sexual maturity and a decrease in the percentage of female walleyes reaching sexual maturity at age III. As a net result of these changes, the proportion of mature females in the stock (an index of stock fecundity) decreased slightly during the interval 1975-84, while the estimated biomass of the standing stock rose from 9 000 to nearly 26 000 t. Both sport and commercial catches increased markedly after 1980 in Lake Erie's central basin.

Canadian Journal of Fisheries and Aquatic Sciences

Bison in the greater Yellowstone

In the Greater Yellowstone Area, free-ranging bison occur in Jackson Hole, Wyoming, and Yellowstone National Park. The Yellowstone population is discussed, with emphasis on changes in numbers from approximately 400 in 1968 to about 3500 now. Major influences for change initially were natural; more recently the winter road system used by snowmobiles appeared to be the dominant factor. The situation is in a state of flux. Interagency planning is in progress to address management alternatives for conflicts outside the park.

Report

PRELIMINARY EVALUATION OF LANDSAT-4 THEMATIC MAPPER DATA FOR THEIR GEOMETRIC AND RADIOMETRIC ACCURACIES.

This report describes results of some preliminary analyses of Landsat-4 Thematic Mapper data for the NASA Landsat Image Quality Analysis program. The work is being done under interagency agreement S-12407-C between the U. S. Geological Survey and NASA-Goddard Space Flight Center. Landsat-4 TM scenes for Washington, D. C. Macon, Georgia (40050-15333, September 4, 1982) and Cape Canaveral, Florida have been examined to determine their geometric and radiometric accuracy. In addition, parts of these scenes are also being analyzed to determine the ability to identify specific rock types with the added near-infrared TM bands.

Conference Paper

Geologic radon potential of the United States

The Indoor Radon Abatement Act of 1988 (Public Law 100-551) directed the U.S. Environmental Protection Agency (EPA) to identify areas of the United States that have the potential to produce harmful levels of indoor radon, based on both geological data and on indoor radon levels in homes and other structures. As part of an Interagency Agreement between the EPA and the U.S. Geological Survey (USGS), the USGS prepared radon potential estimates for the United States. The purpose and intended use of these reports is to help identify areas where states can target their radon program resources, to provide guidance in selecting the most appropriate building code options for areas, and to provide general information on radon and geology for each state for federal, state, and municipal officials dealing with radon issues. The booklets are organized by EPA Federal boundaries (Regions) with chapters for each state. Each state chapter discusses the state's specific geographic setting, soils, geologic setting, geologic radon potential, indoor radon data, and a summary outlining the radon potential rankings of geologic areas in the state.

Open-File Report

Data from geothermal test wells near Mount Hood, Oregon

This report includes well specifications, drillers ' logs, and temperature logs of geothermal test wells drilled at 7 sites near Mt. Hood, Oreg. The wells were drilled in 1979 and 1980 under contract to the U.S. Geological Survey. The project, funded by the U.S. Department of Energy, was part of an interagency effort to determine the geothermal potential of Mt. Hood. The agencies involved were, U.S. Department of Energy, U.S. Forest Service, U.S. Geological Survey, and Oregon Department of Geology and Mineral Industries. (USGS)

Open-File Report

Preliminary geologic map of the Chugach National Forest special study area, Alaska

In 1990, both the U.S. Geological Survey and U.S. Bureau of Mines were contacted by the Chugach National Forest (CNF) for the purpose of providing mineral resource information for the CNF Master Plan during the planning period fiscal years 1991-1994. This information is to address the terms and requirements of the 1986 Settlement Agreement and to provide mineral and geologic information useful to the CNF for making land-use decisions. In early 1992 an Interagency Agreement between the U.S. Geological Survey, the U.S. Bureau of Mines and the Chugach National Forest was signed. In this agreement the U.S. Geological Survey is to provide a report which estimates the undiscovered mineral endowments of the 'special' study area and to identify the potential for mineral discovery and development. The U.S. Bureau of Mines was to prepare a report updating the discovered mineral endowment of the Special Study Area. These reports are now published (Roe and Balen, 1994; Nelson and others, 1994). This geologic map is a component of the U.S. Geological Survey contribution to the overall project.

Alaska

Results from the hydrodynamic element of the 1994 entrapment zone study in Suisun Bay

The entrapment zo as long been considered an important region of the San Francisco estuary. It has been the subject of several previous studies, and its location has been suggested as an index of condition of the estuarine ecosystem.A close correlate of this location, X2 1, is now used as a management objective on the basis that X2 is correlated with the abundance or survival of several estuarine-dependent species. X2 is a crude tool to use for this purpose, but it can be refined only through improved understanding of the various mechanisms underlying these correlations. These mechanisms probably differ among species, but for species resident in and near the entrapment zone, the correlation with X2 may be due to variations in intenSity oftrapping mechanisms with pOSition of the entrapment zone. Therefore, it is worthwhile to investigate these trapping mechanisms, the nature of the entrapment zone as habitat, and the responses of the entrapment zone to changes in X2 or outflow from the Sacramento-San Joaquin Delta. Studies ofthe entrapment zone ofthe San Francisco estuary have been conducted in springs of 1994, 1995, and 1996. These studies have been funded by the Interagency Ecological Program and conducted by scientists from IEP member agencies, the Romberg Tiburon Center for Environmental Studies, Bodega Marine Laboratory, and the University of California at Santa Cruz. This report presents results from 1994, a low-flow year. Subsequent reports will describe results from 1995 and 1996 and highlight differences among years. This report is organized in chapters that comprise more-or-Iess independent papers, with an introductory chapter for the entire study. This Executive Summary presents highlights of the overall study plan and summarizes the major findings.

California

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2017

This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys from 2013 to 2017 during June and September. The survey design provided temporal and spatial coverage that does not exist in the interagency trawl database, and thus complemented the August Ohio-Ontario effort to reinforce stock assessments with more robust data. Analyses herein evaluated trends in: total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity and community structure. Data from this effort can be explored interactively online (https://lebs.shinyapps.io/western-basin/), and future analyses will be supported by public data and metadata records available on ScienceBase (https://doi.org/10.5066/F7KK9B1R).

Michigan, Ohio, Ontario, New York, Pennsyvania

Preliminary assessment of vertical stability and gravel transport along the Umpqua River, southwestern Oregon

This report addresses physical channel issues related to instream gravel mining on the Umpqua River and its two primary tributaries, the North and South Umpqua Rivers. This analysis constitutes a “Phase I” investigation, as designated by an interagency team cochaired by the U.S. Army Corps of Engineers, Portland District, and the Oregon Department of State Lands to address instream gravel mining issues across Oregon. Phase I analyses rely primarily on existing datasets and cursory analysis to determine the vertical stability of a channel to ascertain whether a particular river channel is aggrading, degrading, or at equilibrium. Additionally, a Phase I analysis identifies other critical issues or questions pertinent to physical channel conditions that may be related to instream gravel mining activities. This analysis can support agency permitting decisions as well as possibly indicating the need for additional studies. This specific analysis focuses on the mainstem Umpqua River from the Pacific Ocean at River Mile (RM) 0 to the confluence of the North and South Umpqua Rivers (at RM 111.8), as well as the lower 29 mi of the North Umpqua River and the lower 80 mi of the South Umpqua River (fig. 1). It is within these reaches where mining of gravel bars for aggregate has been most prevalent.

Oregon

Proceedings of the Federal Interagency Sediment Monitoring Instrument and Analysis Research Workshop, September 9-11, 2003, Flagstaff, Arizona

The Advisory Committee on Water Information's Subcommittee on Sedimentation sponsored the Federal Interagency Sediment Monitoring Instrument and Analysis Research Workshop on September 9-11, 2003, at the U.S. Geological Survey Flagstaff Field Center, Arizona. The workshop brought together a diverse group representing most Federal agencies whose mission includes fluvial-sediment issues; academia; the private sector; and others with interests and expertise in fluvial-sediment monitoring ? suspended sediment, bedload, bed material, and bed topography ? and associated data-analysis techniques. The workshop emphasized technological and theoretical advances related to measurements of suspended sediment, bedload, bed material and bed topography, and data analyses. This workshop followed and expanded upon part of the 2002 Federal Interagency Workshop on Turbidity and Other Sediment Surrogates (http://water.usgs.gov/pubs/circ/2003/circ1250/), which initiated a process to provide national standards for measurement and use of turbidity and other sediment-surrogate data. This report provides a description of the salient attributes of the workshop and related information, major deliberations and findings, and principal recommendations. This information is available for evaluation by the Subcommittee on Sedimentation, which may opt to develop an action plan based on the recommendations that it endorses for consideration by the Advisory Committee on Water Information.

Circular

Geothermal handbook

The Bureau of Land Management offered over 400,000 hectares (one million acres) for geothermal exploration and development in 1975, and figure is expected to double this year. The Energy Research and Development Administration hopes for 10-15,000 megawatts of geothermal energy by 1985, which would require, leasing over 16.3 million hectares (37 million acres) of land, at least half of which is federal land. Since there is an 8 to 8-1/2 year time laf between initial exploration and full field development, there would have to be a ten-fold increase in the amount of federal land leased within the next three years. Seventy percent of geothermal potential, 22.3 million hectares (55 million acres), is on federal lands in the west. The implication for the Service are enormous and the problems immediate. Geothermal resource are so widespread they are found to some extent in most biomes and ecosystems in the western United States. In most cases exploitation and production of geothermal resources can be made compatible with fish and wildlife management without damage, if probable impacts are clearly understood and provided for before damage has unwittingly been allowed to occur. Planning for site suitability and concern with specific operating techniques are crucial factors. There will be opportunities for enhancement: during exploration and testing many shallow groundwater bodies may be penetrated which might be developed for wildlife use. Construction equipment and materials needed for enhancement projects will be available in areas heretofore considered remote projects will be available in areas heretofore considered remote by land managers. A comprehensive knowledge of geothermal development is necessary to avoid dangers and seize opportunities. This handbook is intended to serve as a working tool in the field. It anticipated where geothermal resource development will occur in the western United States in the near future. A set of environmental assessment procedures are presented which will allow the Service to provide input to the federal leasing process. As an impact information source by which to judge the appropriateness of a specific activity at a specific site, a discussion of activities-impacts is provided on a phase by phase basis. Mitigation and possible enhancement techniques are also presented so that the impacts of the development can be dealt with and the fish and wildlife situation improved. The Service can achieve its objective only if biological input is made throughout the entire process of geothermal development, from exploration to testing to full field operation. A discussion of geothermal leasing procedures emphasizes the timing and nature of Service participation in current interagency lease processing, and there is a provision for the utilization of new knowledge, techniques, and responses as experience is accumulated.

FWS/OBS

Droughts, epic droughts and droughty centuries - lessons from a California paleoclimatic record: a PACLIM 2001 meeting report

During the early 1990s (but echoing studies by S.T. Harding at the University of California, from as early as the 1930s), several lines of paleoclimate evidence in and around the Sierra Nevada Range have provided the water community in California with some real horror stories. By studying ancient tree stumps submerged in Lake Tahoe and Tenaya Lake, stumps that were emerging from Mono Lake during its recent decline, and stumps that were exhumed in the Walker River bed during the floods of 1997, paleoclimatologists like Scott Stine of California State University, Hayward, assembled a picture of epic droughts in the central Sierra Nevada during the medieval period. These droughts had to be severe to drop water levels in the lakes and rivers low enough for the trees to grow in the first place, and then had to last for hundreds of years to explain tree-ring counts in these sizeable stumps. Worse yet, the evidence suggested at least two such epic droughts, one ending close to 1100 and the other close to 1350. These epic droughts challenged paleoclimatologists, as well as modern climatologists and hydrologists, to understand and, ultimately, to determine the likelihood that such droughts might recur in the foreseeable future. The first challenge, however, was to verify that such droughts were more than local events and as extreme as suggested. At this year’s Pacific Climate (PACLIM) Workshop, held March 18–21, 2001, at Asilomar (Pacific Grove, Calif.), special sessions brought together scientists to compare paleoclimatic reconstructions of ancient droughts and pluvial (wet) epidodes to try to determine the nature of decadal and centennial climate fluctuations in western North America, with emphasis on California. A companion session brought together modern climatologists to report on the latest explanations (and evidence) for decadal climate variations during the instrumental era of the 20th century.

Interagency Ecological Program Newsletter

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2020

This report presents biomass-based summaries of fish communities in the West Basin of Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2020 during June and September. The survey design provided temporal and spatial coverage that did not exist in the interagency trawl database, and thus complemented the August ODNR-OMNRF effort to reinforce stock assessments with more robust data. Analyses herein evaluated trends in: total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity and community structure. Data from this effort can be explored interactively online (https://lebs.shinyapps.io/western-basin/), and are accessible for download (https://www.sciencebase.gov/catalog/item/6013031fd34e162231fed756, Keretz et al. 2021). Annual survey data are added to these sources as the data become available.

Lake Erie

Chapter 1: General conceptual model for climate change in the Upper San Francisco Estuary

This report is a collaboration by many state and federal agencies working in the Upper San Francisco Estuary to analyze the potential impacts of climate change to different ecosystems found here. Management stategies for ecological values in the face of climate change require reliable and focused information. In this technical report, our focus is on the Upper San Francisco Estuary (SFE), which contains the Sacramento-San Joaquin Delta and Suisun Bay. This area is home to three interconnected ecosystems: open water, floodplain, and tidal marsh. For this geographical area, we have decades of in-depth monitoring information and scientific investigations that have been successfully used to address a number of management needs. In 2019, the Interagency Ecological Program established a diverse work team to improve our ability to anticipate and respond to climate change impacts. The charge to the group was to: • synthesize science relevant to climate change, • determine important knowledge gaps, and • identify ecosystem metrics for climate change. We focus our analyses on the likely impacts of climate change on interconnected aquatic habitats. We illustrate how changes in habitats are likely to affect diverse species. In this report we describe ecological trends attributable to climate change and likely future impacts. We address four principal questions: 1. How have the habitats and biotic communities changed due to climatic trends and events? 2. How are estuarine habitats, flora, and fauna likely to change as climate change trends continue? 3. What are key metrics to document ecosystem change as a result of climate change? 4. How should our monitoring change to improve information value? Our work builds on the similar work of the San Francisco Baylands Goals Project (Goals Project 2015), which addressed climate change impacts to wetlands downstream of the confluence of the Sacramento and San Joaquin Rivers. We aim to contribute to an integrated baseline understanding of climate change impacts for the entire San Francisco Estuary.

California

Surveillance for Asian H5N1 avian influenza in the United States

Increasing concern over the potential for migratory birds to introduce the Asian H5N1 strain of avian influenza to North America prompted the White House Policy Coordinating Committee for Pandemic Influenza Preparedness to request that the U.S. Departments of Agriculture (USDA) and Interior (DOI) develop a plan for the early detection of highly pathogenic avian influenza (HPAI) in the United States. To promote coordination among wildlife, agriculture, and human health agencies on HPAI surveillance efforts, the two Departments worked with representatives from the U.S. Department of Health and Human Services, the International Association of Fish and Wildlife Agencies, and the Alaska Department of Fish and Game to develop the U.S. Interagency Strategic Plan for Early Detection of Asian H5N1 Highly Pathogenic Avian Influenza in Wild Migratory Birds.

Fact Sheet

Water quality variability in San Francisco Bay, Some gGeneral lessons from 1996 sampling: 1996 annual report, San Francisco estuary regional monitoring program for trace substances

This report describes the results from the 1996 Regional Monitoring Program for Trace Substances (RMP). It is the fourth Annual Report from the RMP which began in 1993 and attempts to synthesize the most obvious data patterns from the last four years. This report includes data from Base Program monitoring activities, as well as results of Pilot and Special Studies conducted or completed in 1996. Additionally, several articles contributed by RMP investigators and others, are included. These articles provide perspective and insight on important contaminant issues identified by the RMP. This summary addresses which kinds of pollutants measured by the RMP appear to be at levels that warrant concern, what kinds of trends may be discerned, and which stations have consistently shown elevated contaminant levels. The goals or general objectives of the RMP are: 1. To obtain high quality baseline data describing the concentrations of toxic and potentially toxic trace elements and organic contaminants in the water and sediment of the San Francisco Estuary. 2. To determine seasonal and annual trends in chemical and biological water quality in the San Francisco Estuary. 3. To continue to develop a data set that can be used to determine long-term trends in the concentrations of toxic and potentially toxic trace elements and organic contaminants in the water and sediments of the San Francisco Estuary. 4. To determine whether water quality and sediment quality in the Estuary at large are in compliance with objectives established by the Basin Plan (the regulatory planning document used by the Regional Water Quality Control Board). 5. To provide a database on water and sediment quality in the Estuary which is compatible with data being developed in other ongoing studies, including wasteload allocation studies and model development, sediment quality objectives development, in-bay studies of dredged material disposal, Interagency Ecological Program (IEP) water quality studies, primary productivity studies, local effects biomonitoring programs, and state and federal mussel watch programs.

California