Search USGS⌕ Search

SEARCH · Search USGS

Results for “Biology Open”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 181 records · Page 10Linked to original sources
USGS1999

Restoration of bighorn sheep metapopulations in and near 15 national parks: Conservation of a severely fragmented species; Volume I, Planning, problem definition, findings, and restoration

Bighorn sheep ( Ovis canadensis ) were historically a ubiquitous species. Prior to the arrival of Europeans, they were seemingly widespread in nearly all steep habitats in the mountains, foothills, river breaks, and prairie badlands of the western United States. However, since catastrophic declines in the late 1800s and early 1900s, most extant populations have existed as small, isolated groups in a highly fragmented distribution. Stochastic events such as seasonal weather change or population fluctuations render these small populations more prone to extirpation than larger populations. Three different subspecies of bighorn sheep were eliminated from 14 of 18 National Park System (NPS) units in the 6-state Intermountain Region of the western United States (Singer 1994). In 1990, when this restoration was initiated, only 4 (18%) of 22 discrete park populations or metapopulations were considered large enough (300-500 animals) to be secure for long-term management. Five (23%) other populations numbered 100-299 animals and 3 (14%) populations numbered 75-99 animals. But, the remaining 10 populations (45%) were either extirpated (n = 2), remnant populations (n = 5, populations of 7-10 animals), or vulnerable to extirpation (n = 3, populations of less than 50 animals). Restoration prior to 1991-96 was largely completed in one NPS unit, but was incomplete in the remaining units. Most bighorn sheep are not federally listed as endangered or threatened species, although the California peninsular population of desert bighorn sheep was recently listed as endangered. The bighorn sheep is a rare or uncommon species that is declining in many parts of its range but is abundant in other areas and still relatively easy to study and manage. The Secretary of the Department of the Interior, Bruce Babbitt, directed the Biological Resources Division of the U.S. Geological Survey in 1993 (when this agency was still the National Biological Service) to research and recover species that were declining to avoid expensive and controversial federal listing. Because the capture and moving of the species are still relatively uncomplicated and because some source stocks are available, aggressive restoration in 15 National Park System units in the former Rocky Mountain Region was recommended in 1990. This report details the 7-year restoration of bighorn sheep to all currently suitable historic habitats in the national parks of the former Rocky Mountain Region (now the Intermountain and Midwest regions of the National Park Service). The purpose of the first phase of the restoration during 1991-93 was to conduct research and population surveys and to formulate the restoration plans. The purpose of the second phase of the initiative during 1994-97 was to conduct GIS-based habitat and biological assessments of prospective restoration sites, write restoration plans, and restore and monitor the released bighorn sheep.

Colorado, Montana, North Dakota, South Dakota, Uta↗
USGS2024

Insufficient and biased representation of species geographic responses to climate change

The geographic redistributions of species due to a rapidly changing climate are poised to perturb ecological communities and significantly impact ecosystems and human livelihoods. Effectively managing these biological impacts requires a thorough understanding of the patterns and processes of species geographic range shifts. While substantial recent redistributions have been identified and recognized to vary by taxon, region, and range geometry, there are large gaps and biases in the available evidence. Here, we use the largest compilation of geographic range change observations to date, comprised of 33,016 potential redistributions across 12,009 species, to formally assess within- and cross-species coverage and biases and to motivate future data collection. We find that species coverage varies strongly by taxon and underrepresents species at high and low latitudes. Within species, assessments of potential redistributions came from parts of their geographic range that were highly uneven and non-representative. For most species and taxa, studies were strongly biased toward the colder parts of species' distributions and thus significantly underrepresented populations that might get pushed beyond their maximum temperature limits. Coverage of potential leading and trailing geographic range edges under a changing climate was similarly uneven. Only 8% of studied species were assessed at both high and low latitude and elevation range edges, with most only covered at one edge. This suggests that substantial within-species biases exacerbate the considerable geographic and taxonomic among-species unevenness in evidence. Our results open the door for a more quantitative accounting for existing knowledge biases in climate change ecology and a more informed management and conservation. Our findings offer guidance for future data collection that better addresses information gaps and provides a more effective foundation for managing the biological impacts of climate change.

Global Change Biology↗
USGS2019

Prediction of unprecedented biological shifts in the global ocean

Impermanence is an ecological principle 1 but there are times when changes occur nonlinearly as abrupt community shifts (ACSs) that transform the ecosystem state and the goods and services it provides 2 . Here, we present a model based on niche theory 3 to explain and predict ACSs at the global scale. We test our model using 14 multi-decadal time series of marine metazoans from zooplankton to fish, spanning all latitudes and the shelf to the open ocean. Predicted and observed fluctuations correspond, with both identifying ACSs at the end of the 1980s 4,5,6,7 and 1990s 5,8 . We show that these ACSs coincide with changes in climate that alter local thermal regimes, which in turn interact with the thermal niche of species to trigger long-term and sometimes abrupt shifts at the community level. A large-scale ACS is predicted after 2014—unprecedented in magnitude and extent—coinciding with a strong El Niño event and major shifts in Northern Hemisphere climate. Our results underline the sensitivity of the Arctic Ocean, where unprecedented melting may reorganize biological communities 5,9 , and suggest an increase in the size and consequences of ACS events in a warming world.

Nature Climate Change↗
USGS2015

Chemical mixtures and environmental effects: a pilot study to assess ecological exposure and effects in streams

Assessment and management of the risks of exposure to complex chemical mixtures in streams are priorities for human and environmental health organizations around the world. The current lack of information on the composition and variability of environmental mixtures and a limited understanding of their combined effects are fundamental obstacles to timely identification and prevention of adverse human and ecological effects of exposure. This report describes the design of a field-based study of the composition and biological activity of chemical mixtures in U.S. stream waters affected by a wide range of human activities and contaminant sources. The study is a collaborative effort by the U.S. Geological Survey and the U.S. Environmental Protection Agency. Scientists sampled 38 streams spanning 24 States and Puerto Rico. Thirty-four of the sites were located in watersheds impacted by multiple contaminant sources, including industrial and municipal wastewater discharges, crop and animal agricultural runoff, urban runoff, and other point and nonpoint contaminant sources. The remaining four sites were minimally development reference watersheds. All samples underwent comprehensive chemical and biological characterization, including sensitive and specific direct analysis for over 700 dissolved organic and inorganic chemicals and field parameters, identification of unknown contaminants (environmental diagnostics), and a variety of bioassays to evaluate biological activity and toxicity.

Open-File Report↗
USGS1995

Bibliography for Hayes, Spurr, Crater Peak, Redoubt, Iliamna, Augustine, Douglas, and Aniakchak volcanoes, Alaska

Alaska has more than 40 active volcanoes, many of which are close to the major population centers of south-central Alaska. This bibliography was compiled to assist in the preparation of volcano hazard evaluations at Cook Inlet volcanoes. It lists articles, reports, and maps about the geology and hydrology of Hayes, Spurr, Redoubt, Iliamna, Augustine, and Douglas volcanoes in the Cook Inlet region as well as Aniakchak Volcano on the Alaska Peninsula. References on the biology and archaeology of areas surrounding each volcano also are included because they may provide useful background information.

Alaska↗
USGS1999

U.S. Geological Survey programs in Florida, 1999

The safety, health, and economic well-being of Florida?s citizens are important to the U.S. Geological Survey (USGS), which is involved in water-related, geologic, biological, land use, and mapping issues in many parts of the State. The USGS office in Tallahassee acts as the liaison for all studies conducted by USGS scientists in Florida. Water resources activities are conducted not only from the office in Tallahassee, but also from offices in Miami, Tampa, and Altamonte Springs (Orlando). Scientists in these offices investigate surface water, ground water and water quality in Florida, working in cooperation with other Federal, State and local agencies and organizations. The USGS Center for Coastal Geology and Regional Marine Studies was established in St. Petersburg in 1988, in cooperation with the University of South Florida. The Center conducts a wide variety of research on mineral resources and on coastal and regional marine problems, including coastal erosion, climate change, wetlands deterioration, and coastal pollution. A USGS mapping office is located in St. Petersburg. Also, the Earth Science Information Center (ESIC) in Tallahassee provides USGS information to customers and directs inquiries to the appropriate USGS office or State agency on earth science topics, particularly those related to cartography, geography, aerial photography, and digital data. Biologists at the USGS Florida Caribbean Science Center, located in Gainesville, conduct biological and ecosystem studies in Florida, Puerto Rico, and the Virgin Islands.

Florida↗
USGS2006

Impacts of marsh management on coastal-marsh bird habitats

The effects of habitat-management practices in coastal marshes have been poorly evaluated. We summarize the extant literature concerning whether these manipulations achieve their goals and the effects of these manipulations on target (i.e., waterfowl and waterfowl food plants) and non-target organisms (particularly coastal-marsh endemics). Although we focus on the effects of marsh management on birds, we also summarize the scant literature concerning the impacts of marsh manipulations on wildlife such as small mammals and invertebrates. We address three common forms of anthropogenic marsh disturbance: prescribed fire, structural marsh management, and open-marsh water management. We also address marsh perturbations by native and introduced vertebrates.

Studies in Avian Biology↗
USGS1998

Habitat use by the endangered Karner blue butterfly in oak woodlands: The influence of canopy cover

The Karner blue butterfly Lycaeides melissa samuelis is an endangered species residing in the Great Lakes and northeastern regions of the United States. Increased canopy cover is a major factor implicated in the decline of the Karner blue at many locales. Therefore, we examined how the butterfly's behavior varied with canopy cover. Adult males at Indiana Dunes National Lakeshore used habitat under canopy openings for nearly 90% of their activities; females used openings and shaded areas more equally. The frequency of oviposition on the sole host plant, wild lupine Lupinus perennis , was highest under 30–60% canopy cover even though lupine was more abundant in more open areas. Larvae fed preferentially on larger lupine plants and on lupines in denser patches. However, lupines were generally larger in the shade. Therefore, shade-related trade-offs existed between lupine abundance and distribution of larval feeding and oviposition. Also, heterogeneity of shading by sub-canopy woody vegetation was greater at oviposition sites than at sites where lupine did not grow. Given the importance of shade heterogeneity, a mixture of canopy openings and shade, on a scale similar to daily adult movement range, should be beneficial for this butterfly.

Biological Conservation↗
USGS2012

Monitoring of stream restoration habitat on the main stem of the Methow River, Washington, during the pre-treatment phase (October 2008-May 2012) with a progress report for activities from March 2011 to November 2011

Introduction The U.S. Geological Survey (USGS) received a request from the Bureau of Reclamation (Reclamation) to provide monitoring and an evaluation of the effectiveness of habitat actions that Reclamation plans to implement in the Upper Columbia River basin, which includes the Methow River. This monitoring and evaluation program is to partially fulfill Reclamations part of the 2008 Biological Opinion for the Federal Columbia River Power System that includes a Reasonable and Prudent Alternative (RPA) to protect listed salmon and steelhead across their life cycle. The target species in the Methow River for this monitoring and restoration effort include Upper Columbia River (UCR) spring Chinook salmon ( Oncorhynchus tshawytscha ), UCR steelhead ( O. mykiss ), and bull trout ( Salvelinus confluentus ), which are listed as threatened or endangered under the Endangered Species Act. This report covers UCR activities performed by USGS personnel from March 2011 to November 2011. It involves collecting and analyzing data collected during pre-implementation (2008–2012) there will be a follow-up after actions are completed (2012–2014). The goal of Reclamation is to maximize the potential of habitat and improve proposed limiting factors affecting the middle Methow River subwatershed (Reclamation, 2010). The Middle Methow (M2) reach (river kilometer mile [rkm] 843.065 to 843.080) of the Methow River was selected as the treatment reach for this study based on possible stream restoration plans by Reclamation (fig. 1). The upper Methow River (rkm 843.094 and 843.080), Chewuch River, and the Methow River downstream of the Twisp River (rkm 843.065) are being sampled as reference and control reaches in this study (fig. 2). This report covers the third year in the pre-evaluation of the M2 reach and its side channels. Restoration of the M2 reach is scheduled for 2012, which is planned to be followed by a multi-year intensive post-evaluation period. The intent of the summary of information provided in this report is to fulfill the objectives and tasks submitted in a statement of work to Reclamation in November 2010 (Connolly and Martens, 2011). The study design provides data by which to assess potential fish response to a Reclamation habitat restoration effort focused to improve juvenile salmonid rearing habitat in the M2, which runs between the towns of Winthrop and Twisp, Washington (fig. 1). The pre-treatment phase of the study is designed so that specific questions about the response of target fish species (spring Chinook salmon, steelhead, and bull trout) to the restoration actions can be addressed. Effectiveness is being determined by measuring fish productivity and habitat connectivity of the restoration reach and adjoining reaches, and their tributaries. The study includes sampling efforts directed to understand the relationships between stream habitat and the abundance of various fish species and to assess the response of the fish community. To complement these measurements, we will use models to predict response to treatment, and we will update the model with empirically derived data as these data become available. This modeling effort is expected to inform us of data gaps, sensitivity of key variables, and ability to detect response based on variability of the data. The approach and actions taken or planned by Reclamation to modify off-channel habitat are largely untested as to their effectiveness to improve target fish species’ productivity and survival needs. Those documented strategies that identify both physical parameters and biological relationships and benefits have been identified (Reclamation, 2008). To assess biological performance, we plan to compare age structure, growth, and age at smolting between those fish that stay in natal areas versus those fish that move. To assess retention in, and movement from or into, the restoration reach, we have used a combination of within-reach and out-of-reach sampling. We are using passive integrated transponder (PIT) tags, a network of instream PIT tag interrogation systems, and smolt traps to assess differences in biological performance and the magnitude of retention in, and movement from and into, the restoration reach.

Washington↗
USGS2014

Water-quality, bed-sediment, and biological data (October 2012 through September 2013) and statistical summaries of data for streams in the Clark Fork Basin, Montana

Water, bed sediment, and biota were sampled in streams from Butte to near Missoula, Montana, as part of a monitoring program in the upper Clark Fork Basin of western Montana. The sampling program was led by the U.S. Geological Survey in cooperation with the U.S. Environmental Protection Agency to characterize aquatic resources in the Clark Fork Basin, with emphasis on trace elements associated with historic mining and smelting activities. Sampling sites were located on the Clark Fork and selected tributaries. Water samples were collected periodically at 20 sites from October 2012 through September 2013. Bed-sediment and biota samples were collected once at 13 sites during August 2013. This report presents the analytical results and quality-assurance data for water-quality, bed-sediment, and biota samples collected at sites from October 2012 through September 2013. Water-quality data include concentrations of selected major ions, trace elements, and suspended sediment. Turbidity and dissolved organic carbon were analyzed for water samples collected at the four sites where seasonal daily values of turbidity were being determined. Daily values of mean suspended-sediment concentration and suspended-sediment discharge were determined for four sites. Bed-sediment data include trace-element concentrations in the fine-grained fraction. Biological data include trace-element concentrations in whole-body tissue of aquatic benthic insects. Statistical sum-maries of water-quality, bed-sediment, and biological data for sites in the upper Clark Fork Basin are provided for the period of record.

Montana↗
USGS2018

Using a food web model to inform the design of river restoration—An example at the Barkley Bear Segment, Methow River, north-central Washington

With the decline of Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ), habitat restoration actions in freshwater tributaries have been implemented to improve conditions for juveniles. Typically, physical (for example, hydrologic and engineering) based models are used to design restoration alternatives with the assumption that biological responses will be improved with changes to the physical habitat. Biological models rarely are used. Here, we describe simulations of a food web model, the Aquatic Trophic Productivity (ATP) model, to aid in the design of a restoration project in the Methow River, north-central Washington. The ATP model mechanistically links environmental conditions of the stream to the dynamics of river food webs, and can be used to simulate how alternative river restoration designs influence the potential for river reaches to sustain fish production. Four restoration design alternatives were identified that encompassed varying levels of side channel and floodplain reconnection and large wood addition. Our model simulations suggest that design alternatives focused on reconnecting side channels and the adjacent floodplain may provide the greatest increase in fish capacity. These results were robust to a range of discharge and thermal regimes that naturally occur in the Methow River. Our results suggest that biological models, such as the ATP model, can be used during the restoration planning phase to increase the effectiveness of restoration actions. Moreover, the use of multiple modeling efforts, both physical and biological, when evaluating restoration design alternatives provides a better understanding of the potential outcome of restoration actions.

Washington↗
USGS1981

Water-resources investigations of the U.S. Geological Survey in Kansas; fiscal years 1979 and 1980

Activities of the U.S. Geological Survey in Kansas include the systematic collection and analysis of data to describe the framework of hydrologic systems, assess the water resources, define existing or potential problems in the quantity or quality of water, and provide information for optimum development and management of resources. Streamflow studies are made to determine availability of supplies and relations to rainfall runoff, urbanization, flood frequencies, and sediment-transport. Ground-water studies are made to determine the quantity of supplies available in aquifer systems, the effects of natural or artificial contamination, and the effects of withdrawals by irrigation, industrial, and municipal supplies. Water-quality studies are made to define physical, chemical, and biological characteristics in streams and principal aquifers, and to evaluate the chemical changes due to urbanization and surface mining.

Kansas↗
USGS1983

Data supplement to: Quality of coal mine drainage to Washington, 1975-77

From December 1975 to September 1977 the U.S. Geological Survey studied coal mine drainage in western Washington to 1) characterize the water quality of drainage from abandoned mines in the 11 coal-bearing areas of the State; 2) examine the water quality effects on a stream receiving drainage from an abandoned coal mine; 3) determine the baseline water-quality conditions at two prospective underground coal mine areas; and 4) recommend procedures for monitoring stream quality in the baseline areas in the event that mining occurs. This report presents physical, chemical, and biological data collected during the study period from Gallop Creek (Whatcom County), Loretta Creek (Skagit County), and Wilkeson Creek (Pierce County) and from 100 abandoned coal mines in western Washington, and from a borehole hydraulic-mining test site. Biological information included taxonomic identifications and counts of benthic invertebrates and periphytic algae. (USGS)

Open-File Report↗