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USGS2016

Combining citizen science species distribution models and stable isotopes reveals migratory connectivity in the secretive Virginia rail

Stable hydrogen isotope (δD) methods for tracking animal movement are widely used yet often produce low resolution assignments. Incorporating prior knowledge of abundance, distribution or movement patterns can ameliorate this limitation, but data are lacking for most species. We demonstrate how observations reported by citizen scientists can be used to develop robust estimates of species distributions and to constrain δD assignments. We developed a Bayesian framework to refine isotopic estimates of migrant animal origins conditional on species distribution models constructed from citizen scientist observations. To illustrate this approach, we analysed the migratory connectivity of the Virginia rail Rallus limicola , a secretive and declining migratory game bird in North America. Citizen science observations enabled both estimation of sampling bias and construction of bias-corrected species distribution models. Conditioning δD assignments on these species distribution models yielded comparably high-resolution assignments. Most Virginia rails wintering across five Gulf Coast sites spent the previous summer near the Great Lakes, although a considerable minority originated from the Chesapeake Bay watershed or Prairie Pothole region of North Dakota. Conversely, the majority of migrating Virginia rails from a site in the Great Lakes most likely spent the previous winter on the Gulf Coast between Texas and Louisiana. Synthesis and applications . In this analysis, Virginia rail migratory connectivity does not fully correspond to the administrative flyways used to manage migratory birds. This example demonstrates that with the increasing availability of citizen science data to create species distribution models, our framework can produce high-resolution estimates of migratory connectivity for many animals, including cryptic species. Empirical evidence of links between seasonal habitats will help enable effective habitat management, hunting quotas and population monitoring and also highlight critical knowledge gaps.

Journal of Applied Ecology↗

USGS2012

The genetic structure of a relict population of wood frogs

Habitat fragmentation and the associated reduction in connectivity between habitat patches are commonly cited causes of genetic differentiation and reduced genetic variation in animal populations. We used eight microsatellite markers to investigate genetic structure and levels of genetic diversity in a relict population of wood frogs ( Lithobates sylvatica ) in Rocky Mountain National Park, Colorado, where recent disturbances have altered hydrologic processes and fragmented amphibian habitat. We also estimated migration rates among subpopulations, tested for a pattern of isolation-by-distance, and looked for evidence of a recent population bottleneck. The results from the clustering algorithm in Program STRUCTURE indicated the population is partitioned into two genetic clusters (subpopulations), and this result was further supported by factorial component analysis. In addition, an estimate of FST (FST = 0.0675, P value \0.0001) supported the genetic differentiation of the two clusters. Estimates of migration rates among the two subpopulations were low, as were estimates of genetic variability. Conservation of the population of wood frogs may be improved by increasing the spatial distribution of the population and improving gene flow between the subpopulations. Construction or restoration of wetlands in the landscape between the clusters has the potential to address each of these objectives.

Colorado↗

USGS2026

Space between houses influences movement and habitat selection of ungulates: Width as a novel metric of development

Wildlife often lose access to habitat due to housing development. The magnitude of indirect habitat loss can be conditional on the configuration of individual houses, but commonly used metrics (i.e. density or distance) can overlook the configuration of development. We introduce a novel framework to index the configuration of development based on the width of space between houses and associated structures. We use resource selection functions to assess the degree that GPS-collared elk ( Cervus canadensis ), mule deer ( Odocoileus hemionus ), pronghorn and moose ( Alces alces ) on winter range and on migration routes use space between houses within northwest Wyoming, USA, near the towns of Cody and Jackson. Further, to help inform regulations aiming to promote wildlife movement across a gradient of land uses, we differentiated between individuals residing in primarily rural and exurban areas. Rural populations of elk, mule deer, pronghorn and moose avoided spaces narrower than 2 km and never used spaces narrower than 50 m between houses, whereas exurban populations of elk, mule deer and moose selected for spaces narrower than 2 km but avoided spaces narrower than 50 m. We identified cutoffs in rural and exurban areas where space may become too narrow for most animals to use. Through this metric, managers and policy makers can inform the necessary width to maintain wildlife movement through corridors. Our width metric can be applied to other systems and our workflow is publicly available ( https://wildlifemovetools.org/width-calculator ) so users can estimate the width of space between structures in their focal areas. Synthesis and applications . In rural areas, maintaining spaces between houses >500 m will likely facilitate ungulate movement. To fully conserve functional habitat, such as unimpeded habitat use along migration corridors, maintaining spaces approximately >2.5 km between houses will likely be necessary.

Wyoming↗

USGS2022

High dispersal rates in hybrids drive expansion of maladaptive hybridization

Hybridization between native and invasive species, a major cause of biodiversity loss, can spread rapidly even when hybrids have reduced fitness. This paradox suggests that hybrids have greater dispersal rates than non-hybridized individuals, yet this mechanism has not been empirically tested in animal populations. Here, we test if non-native genetic introgression increases reproductive dispersal using a human-mediated hybrid zone between native cutthroat trout ( Oncorhynchus clarkii ) and invasive rainbow trout ( Oncorhynchus mykiss ) in a large and connected river system. We quantified the propensity for individuals to migrate from natal rearing habitats (migrate), reproduce in non-natal habitats (stray), and the joint probability of dispersal as a function of genetic ancestry. Hybrid trout with predominantly non-native rainbow trout ancestry were more likely to migrate as juveniles and to stray as adults. Overall, hybrids with greater than 50% rainbow trout ancestry were 5.7 times more likely to disperse than native or hybrid trout with small amounts of rainbow trout ancestry. Our results show a genetic basis for increased dispersal in hybrids that is likely contributing to the rapid expansion of invasive hybridization between these species. Management actions that decrease the probability of hybrid dispersal may mitigate the harmful effects of invasive hybridization on native biodiversity.

Montana↗

USGS2020

Connectivity in the Crown: Highway 2 wildlife crossings

This report summarizes data collected to inform decisions on how to best mitigate the effects on wildlife migration from increasing traffic, development, and recreation along US highway 2. The highway, railway, and river split the Crown of the Continent Ecosystem. This data addresses SO 3362 by providing information on major wildlife trails, observed wildilfe crossings and road kills, and identifying the elk, deer, and other animals that use the areas near 6 potential highway crossing structure locations. This effort resulted in 621 wildlife observations of 26 species collected from hundreds of interactions with employees and the public, 31 businesses visited, and 11 events held or attended. We mapped 230 previously unrecorded wildlife trails between West Glacier and Columbia Falls and measured and photographed 390 culverts between East Glacier and Columbia Falls. We installed 12 trail cameras that captured 9248 wildlife images comprised of 12 species.

Montana↗

USGS2025

Using satellite imagery and soil data to understand occurrences and migration of soil conditions harmful to archaeological sites on Jamestown Island, Virginia

Many know Jamestown Island, Virginia, hereafter referred to as “the Island,” located near the mouth of the James River into the Chesapeake Bay, as the home of the first permanent English settlement in North America. However, the Island is home to 15,000 years’ worth of cultural artifacts and archaeological sites. In addition to its rich history, the Island is home to a variety of native plants and animals, including many rare, threatened, and endangered species. Preserving historical and natural resources is part of Colonial National Historic Park’s (COLO) enabling legislation. To this end, COLO has been seeking data to inform management decisions on how to prioritize resources to preserve archaeological sites and anticipate changes to natural systems from sea-level rise and other effects of climate change. The U.S. Geological Survey (USGS), in partnership with COLO, collected and analyzed data to help determine soil conditions detrimental to archaeological sites across the Island using a combination of soil samples and assessments of vegetative health as a proxy for soil conditions. This study combined normalized difference vegetative index raster grids spanning 8 years, 2010 to 2018, and soil data from 50 sites sampled in dry (June 2021) and wet months (March 2022) at two different soil horizons to investigate potential hazards to plant health and corrosive conditions in the unsaturated subsurface. The data suggest that access to the James River drives soil pH and soil conductivity. Areas of the Island that are subject to frequent inundation were observed to have both higher soil conductivity (as high as 4,845 millisiemens per meter [mS/m]) and lower pH (as low as 3.84). Higher soil conductivity, or salinity, and more acidity create corrosive environment, which can destroy buried artifacts and are detrimental to vegetative health. These conditions were not limited to the edges of the Island, like Black Point. Inland locations, such as the Pitch and Tar Swamp, were observed to have some of the highest conductivity values, which were likely caused by from a combination of inflow of James River water along Back Creek into the Pitch and Tar Swamp and proximity to the Visitor Center and other high-traffic areas of the Island. A difference of normalized difference vegetative index values from 2010 to 2018 raster grid appears to support this, showing an apparent loss of vegetative health in marsh grass in the Pitch and Tar Swamp. These data may inform COLO about areas of the Island that are currently most threatened by corrosive conditions and how those conditions are likely to migrate in the future.

Virginia↗

USGS2020

Sex-specific behaviors of hunted mule deer during rifle season

Animal populations face increased threats to mobility and access to critical habitat from a variety of human disturbances including roads, residential development, agriculture, and energy development. Disturbance from human hunting is known to alter habitat use in ungulates, but recent work suggests that hunting may also trigger the onset of migration. Whether this holds true across ungulate species and hunting systems warrants further empirical testing. We used global positioning system location data from mule deer ( Odocoileus hemionus ) in south-central Wyoming, USA, to evaluate the sex-specific effects of hunting on habitat selection and migratory behavior from 2016 to 2018. We modeled habitat selection before and during hunting season using a step selection function, and we used time-to-event models to evaluate if hunting triggered migration. We found habitat selection and migration timing to be sex specific. Males responded to hunting season by selecting security habitat away from motorized routes, whereas females used habitat through hunting season that retained higher forage quality. Weather, as indexed by temperature and precipitation (i.e., snowfall), influenced migration timing for males and females. Migration timing in males was influenced by migration distance, where individuals traveling >50 km tended to migrate earlier than individuals moving <50 km. For deer that survived to rifle season, hunting was less influential on migration timing than environmental factors. Rifle season increased the likelihood of migration by 2% in females and <0.01% in males compared to outside rifle season. Our findings suggest that roadless areas on mule deer summer ranges and within migration corridors reduce the effects of hunting disturbance. Consequently, managers may consider limiting the use of motorized vehicles as a method for reducing effects on migration from hunting disturbance.

Colorado, Wyoming↗

USGS2005

Controlling for anthropogenically induced atmospheric variation in stable carbon isotope studies

Increased use of stable isotope analysis to examine food-web dynamics, migration, transfer of nutrients, and behavior will likely result in expansion of stable isotope studies investigating human-induced global changes. Recent elevation of atmospheric CO2 concentration, related primarily to fossil fuel combustion, has reduced atmospheric CO2 ??13C (13C/12C), and this change in isotopic baseline has, in turn, reduced plant and animal tissue ??13C of terrestrial and aquatic organisms. Such depletion in CO2 ??13C and its effects on tissue ??13C may introduce bias into ??13C investigations, and if this variation is not controlled, may confound interpretation of results obtained from tissue samples collected over a temporal span. To control for this source of variation, we used a high-precision record of atmospheric CO2 ??13C from ice cores and direct atmospheric measurements to model modern change in CO2 ??13C. From this model, we estimated a correction factor that controls for atmospheric change; this correction reduces bias associated with changes in atmospheric isotopic baseline and facilitates comparison of tissue ??13C collected over multiple years. To exemplify the importance of accounting for atmospheric CO2 ??13C depletion, we applied the correction to a dataset of collagen ??13C obtained from mountain lion (Puma concolor) bone samples collected in California between 1893 and 1995. Before correction, in three of four ecoregions collagen ??13C decreased significantly concurrent with depletion of atmospheric CO2 ??13C (n ??? 32, P ??? 0.01). Application of the correction to collagen ??13C data removed trends from regions demonstrating significant declines, and measurement error associated with the correction did not add substantial variation to adjusted estimates. Controlling for long-term atmospheric variation and correcting tissue samples for changes in isotopic baseline facilitate analysis of samples that span a large temporal range. ?? Springer-Verlag 2005.

Oecologia↗

USGS2000

Response of geese to aircraft disturbances

Low-flying aircraft can affect behavior, physiology, and distribution of wildlife (Manci et al., 1988), and over time, may impact a population by reducing survival and reproductive performance. Thus, it is important to identify the particular aspects of overflights that affect animals so that management strategies can be developed to minimize adverse effects. Waterfowl are particularly sensitive to low-flying aircraft (Manci et al., 1988) and respond at all stages of their annual cycle, including breeding (Gollop et al., 1974a; Laing, 1991), molting (Derksen et al., 1979; Mosbech and Glahder, 1991), migration (Jones and Jones, 1966; Belanger and Bedard, 1989), and wintering (Owens, 1977; Kramer et al., 1979; Henry, 1980). Waterfowl response can be quite variable both within and among species (Fleming et al., 1996). For example, response can vary with age, sex, and body condition of individual, habitat type and quality, and previous exposure to aircraft (Dahlgren and Korshgen, 1992). However, the most important factors influencing a response are aircraft type (Davis and Wiseley, 1974; Jensen, 1990), noise (Mosbech and Glahder, 1991; Temple, 1993), and proximity to the birds, as measured in altitude and lateral distance (Derksen et al., 1979; Belanger and Bedard, 1989; Ward et al., 1994). Wildlife managers can reduce impacts on a population by controlling or modifying these factors. In an experimental study conducted at Izembek Lagoon in southwestern Alaska in 1985-1988 (Ward and Stehn, 1989), we conducted planned aircraft overflights with control of aircraft type, noise, altitude, and lateral distance to flocks (hereafter called lateral distance) to measure behavioral response of fall-staging Pacific brant ( Branta bernicla nigricans ) and Canada geese ( B. canadensis taverneri ) to fixed- and rotary-wing aircraft. These data were then used to develop predictive models of the relationship between aircraft type, noise, altitude, and lateral distance and the response of geese (Ward et al., 1989). We also developed a simulation model incorporating energy intake and daily energy costs to assess the long-term consequences of repeated overflights on the ability of brant to obtain sufficient energy reserves necessary for fall migration and over winter survival (Ward and Stehn, 1989).

Alaska↗

USGS2024

Environmental variation structures reproduction and recruitment in long-lived mega-herbivores: Galapagos giant tortoises

Migratory, long-lived animals are an important focus for life-history theory because they manifest extreme trade-offs in life-history traits: delayed maturity, low fecundity, variable recruitment rates, long generation times, and vital rates that respond to variation across environments. Galapagos tortoises are an iconic example: they are long-lived, migrate seasonally, face multiple anthropogenic threats, and have cryptic early life-history stages for which vital rates are unknown. From 2012 to 2021, we studied the reproductive ecology of two species of Galapagos tortoises ( Chelonoidis porteri and C. donfaustoi ) along elevation gradients that coincided with substantial changes in climate and vegetation productivity. Specifically, we (1) measured the body and reproductive condition of 166 adult females, (2) tracked the movements of 33 adult females using global positioning system telemetry, and monitored their body condition seasonally, (3) recorded nest temperatures, clutch characteristics, and egg survival from 107 nests, and (4) used radiotelemetry to monitor growth, survival, and movements of 104 hatchlings. We also monitored temperature and rainfall from field sites, and remotely sensed primary productivity along the elevation gradient. Our study showed that environmental variability, mediated by elevation, influenced vital rates of giant tortoises, specifically egg production by adult females and juvenile recruitment. Adult females were either elevational migrants or year-round lowland residents. Migrants had higher body condition than residents, and body condition was positively correlated with the probability of being gravid. Nests occurred in the hottest, driest parts of the tortoise's range, between 6 and 165 m elevation. Clutch size increased with elevation, whereas egg survival decreased. Hatchling survival and growth were highest at intermediate elevations. Hatchlings dispersed rapidly to 100–750 m from their nests before becoming sedentary (ranging over <0.2 ha). Predicted future climates may impact the relationships between elevation and vital rates of Galapagos tortoises and other species living across elevation gradients. Resilience will be maximized by ensuring the connectivity of foraging and reproductive areas within the current and possible future elevational ranges of these species.

Galapagos Islands, Santa Cruz Island↗

USGS2019

Mortality in Aransas-Wood Buffalo Whooping Cranes: Timing, location, and causes

For long-lived species with low fecundity rates, population growth rate can be sensitive to changes in annual survival. Understanding where, when, and why animals die provides useful information for prioritizing conservation practices designed to increase survival. As part of a satellite tracking study, we identified 19 confirmed and suspected deaths of Whooping Cranes of various ages from the Aransas-Wood Buffalo Population. Of these, more occurred during winter (∼45%), compared with summer (∼40%) or migration (∼15%). Summer mortalities occurred exclusively within Wood Buffalo National Park, and all winter mortalities occurred on the primary wintering grounds along the Texas Gulf Coast. Predation was the most common cause identified; proximate cause of mortality was not known for most of the birds. Previous assessments of mortality, based on assumptions and some supporting data, speculated that most mortality occurred during migration. Although preliminary, our results are based on stronger evidence and provide a different perspective. Migration may be less risky than previously assumed and of similar risk to other seasons; thus, conservation or management efforts to reduce mortality may have greater effect when focused during breeding and wintering periods, although feasibility and efficacy of these actions will need to be determined.

Book chapter↗

USGS2018

State‐space modelling of the flight behaviour of a soaring bird provides new insights to migratory strategies

Characterising the spatiotemporal variation of animal behaviour can elucidate the way individuals interact with their environment and allocate energy. Increasing sophistication of tracking technologies paired with novel analytical approaches allows the characterisation of movement dynamics even when an individual is not directly observable. In this study, high‐resolution movement data collected via global positioning system (GPS) tracking in three dimensions were paired with topographical information and used in a Bayesian state‐space model to describe the flight modes of migrating golden eagles ( Aquila chrysaetos ) in eastern North America. Our model identified five functional behavioural states, two of which were previously undescribed variations on thermal soaring. The other states comprised gliding, perching and orographic soaring. States were discriminated by movement features in the horizontal (step length and turning angle) and vertical (change in altitude) planes and by the association with ridgelines promoting wind deflection. Tracked eagles spent 2%, 31%, 38%, 9% and 20% of their daytime in directed thermal soaring, gliding, convoluted thermal soaring, perching and orographic soaring, respectively. The analysis of the relative occurrence of these flight modes highlighted yearly, seasonal, age, individual and sex differences in flight strategy and performance. Particularly, less energy‐efficient orographic soaring was more frequent in autumn, when thermals were less available. Adult birds were also better at optimising energy efficiency than subadults. Our approach represents the first example of a state‐space model for bird flight mode using altitude data in conjunction with horizontal locations and is applicable to other flying organisms where similar data are available. The ability to describe animal movements in a three‐dimensional habitat is critical to advance our understanding of the functional processes driving animals’ decisions.

Functional Ecology↗

USGS2015

A sea lamprey ( Petromyzon marinus ) sex pheromone mixture increases trap catch relative to a single synthesized component in specific environments

Spermiating male sea lamprey ( Petromyzon marinus ) release a sex pheromone, of which a component, 7α, 12α, 24-trihydoxy-3-one-5α-cholan-24-sulfate (3kPZS), has been identified and shown to induce long distance preference responses in ovulated females. However, other pheromone components exist, and when 3kPZS alone was used to control invasive sea lamprey populations in the Laurentian Great Lakes, trap catch increase was significant, but gains were generally marginal. We hypothesized that free-ranging sea lamprey populations discriminate between a partial and complete pheromone while migrating to spawning grounds and searching for mates at spawning grounds. As a means to test our hypothesis, and to test two possible uses of sex pheromones for sea lamprey control, we asked whether the full sex pheromone mixture released by males (spermiating male washings; SMW) is more effective than 3kPZS in capturing animals in traditional traps (1) en route to spawning grounds and (2) at spawning grounds. At locations where traps target sea lampreys en route to spawning grounds, SMW-baited traps captured significantly more sea lampreys than paired 3kPZS-baited traps (~10 % increase). At spawning grounds, no difference in trap catch was observed between 3kPZS and SMW-baited traps. The lack of an observed difference at spawning grounds may be attributed to increased pheromone competition and possible involvement of other sensory modalities to locate mates. Because fishes often rely on multiple and sometimes redundant sensory modalities for critical life history events, the addition of sex pheromones to traditionally used traps is not likely to work in all circumstances. In the case of the sea lamprey, sex pheromone application may increase catch when applied to specifically designed traps deployed in streams with low adult density and limited spawning habitat.

Journal of Chemical Ecology↗

USGS2006

Fasting augments PCB impact on liver metabolism in anadromous Arctic Char

Anadromous arctic char (Salvelinus alpinus) undertake short feeding migrations to seawater every summer and accumulate lipids, while the rest of the year is spent in fresh water where the accumulated lipid reserves are mobilized. We tested the hypothesis that winter fasting and the associated polychlorinated biphenyls' (PCBs) redistribution from lipid depots to critical tissues impair the liver metabolic capacity in these animals. Char were administered Aroclor 1254 (0, 1, 10, and 100 mg/ kg body mass) orally and maintained for 4 months without feeding to mimic seasonal winter fasting, while fed groups (0 and 100 mg Aroclor 1254/kg) were maintained for comparison. A clear dose-related increase in PCB accumulation and cytochrome P4501A (CYP1A) protein content was observed in the livers of fasted fish. This PCB concentration and CYP1A response with the high dose of Aroclor were 1.5-fold and 3-fold greater in the fasted than in the fed fish, respectively. In fed fish, PCB exposure lowered liver glycogen content, whereas none of the other metabolic indicators were significantly affected. In fasted fish, PCB exposure depressed liver glycogen content and activities of glucose-6-phosphate dehydrogenase, alanine aminotransferase, lactate dehydrogenase, and phosphoenolpyruvate carboxykinase and elevated 3-hydroxyacylcoA dehydrogenase activity and glucocorticoid receptor protein expression. There were no significant impacts of PCB on heat shock protein 70 (hsp70) and hsp90 contents in either fed or fasted fish. Collectively, our study demonstrates that winter emaciation associated with the anadromous lifestyle predisposes arctic char to PCB impact on hepatic metabolism including disruption of the adaptive metabolic responses to extended fasting. ?? 2006 Oxford University Press.

Toxicological Sciences↗

USGS2018

Development and characterization of two cell lines from gills of Atlantic salmon

Gill disease in Atlantic salmon, Salmo salar L., causes big losses in the salmon farming industry. Until now, tools to cultivate microorganisms causing gill disease and models to study the gill responses have been lacking. Here we describe the establishment and characterization of two cell lines from the gills of Atlantic salmon. Atlantic salmon gill cell ASG-10 consisted of cells staining for cytokeratin and e-cadherin and with desmosomes as seen by transmission electron microscopy suggesting the cells to be of epithelial origin. These structures were not seen in ASG-13. The cell lines have been maintained for almost 30 passages and both cell lines are fully susceptible to infection by infectious hematopoietic necrosis virus (IHNV), viral hemorrhagic septicemia virus (VHSV), infectious pancreatic necrosis virus (IPNV), Atlantic salmon reovirus TS (TSRV) and Pacific salmon paramyxovirus (PSPV). While infectious salmon anemia virus (ISAV) did not cause visible CPE, immunofluorescent staining revealed a sub-fraction of cells in both the ASG-10 and ASG-13 lines may be permissive to infection. ASG-10 is able to proliferate and migrate to close scratches in the monolayer within seven days in vitro contrary to ASG-13, which does not appear to do have the same proliferative and migratory ability. These cell lines will be useful in studies of gill diseases in Atlantic salmon and may represent an important contribution for alternatives to experimental animals and studies of epithelial–mesenchymal cell biology.

PLoS ONE↗

USGS2021

Effects of plunge pool configuration on downstream passage survival of juvenile blueback herring

Anadromous alosines are widespread throughout the Northern Hemisphere. Juveniles of this clade are notoriously fragile animals that are at high risk of injury and death associated with passage at hydroelectric facilities. Although turbine mortality is a common concern, conditions encountered when bypassed around these routes may also be hazardous. Downstream bypass structures typically discharge into plunge pools, which are highly turbulent and may cause mechanical injury. We subjected live, actively migrating juvenile blueback herring to a suite of realistic plunge pool conditions (3 m drop, pool depth of 60–180 cm, and discharge of 0.28–1.70 m 3 /s) and monitored them for ≥ 96 h. Survival was generally higher than expected (>80% in all cases). However, both plunge pool volume and total discharge affected survival with elevated discharge and shallow conditions associated with increased mortality. Mortality was often delayed: rates remained elevated throughout the monitoring period, indicating that survival studies based on shorter periods underestimate total mortality.

Aquaculture and Fisheries↗

USGS1979

Population ecology of house mice in unstable habitats

(1) The relationships between habitat change and house mouse populations were studied by monthly live trapping in a corn-wheat-hay rotation on a small Maryland farm. (2) Population density reached 53.0/ha in a wheat/hay field in October and 25.4/ha in corn in September. Populations increased by immigration as wheat or corn grew and ripened and decreased by emigration as hay became tall and dense. (3) Survival rates were high in winter in the relatively stable habitat of the wheat/hay field; they were low throughout the summer in both fields, and were reduced by corn harvest, less so by wheat harvest. If they were related to population density or increase, or to breeding condition, the relationships were obscured by the overriding influence of habitat change. (4) In the spring, when the population in the hay field `crashed,' essentially the entire population moved from long-established ranges in the hay field to the field of ripening wheat, where new ranges were established. In the new field, fewer than 30% of the old associations between individuals persisted. (5) Individual mice maintained home ranges (88.1 +- 6.1 m in length) in the same general area during their residence in a field. Ranges shifted from month to month, perhaps in response to changes in populations and habitat; exploratory travels and other movements also modified home range behaviour. (6) Minimum life expectancy (residence time) was greater from November (4-5 months) than from June/July (1-2 months). Maximum individual age was 17 months. (7) The demographic pattern fell at the r extreme of the r-K continuum. Mice bred from May to October, matured and produced litters rapidly, produced several litters in a season, and had a high turnover rate. (8) It was concluded that migration was a primary mechanism of population regulation in the cropfield mosaic and that it was driven by habitat change, a system in contrast to those described for house mice in confined conditions.

Journal of Animal Ecology↗

USGS2022

Integrating data types to estimate spatial patterns of avian migration across the Western Hemisphere

For many avian species, spatial migration patterns remain largely undescribed, especially across hemispheric extents. Recent advancements in tracking technologies and high-resolution species distribution models (i.e., eBird Status and Trends products) provide new insights into migratory bird movements and offer a promising opportunity for integrating independent data sources to describe avian migration. Here, we present a three-stage modeling framework for estimating spatial patterns of avian migration. First, we integrate tracking and band re-encounter data to quantify migratory connectivity, defined as the relative proportions of individuals migrating between breeding and nonbreeding regions. Next, we use estimated connectivity proportions along with eBird occurrence probabilities to produce probabilistic least-cost path (LCP) indices. In a final step, we use generalized additive mixed models (GAMMs) both to evaluate the ability of LCP indices to accurately predict (i.e., as a covariate) observed locations derived from tracking and band re-encounter datasets versus pseudo-absence locations during migratory periods, and to create a fully integrated (i.e., eBird occurrence, LCP, and tracking/band re-encounter data) spatial prediction index for mapping species-specific seasonal migrations. To illustrate this approach, we apply this framework to describe seasonal migrations of 12 bird species across the Western Hemisphere during pre- and post-breeding migratory periods (i.e., spring and fall, respectively). We found that including LCP indices with eBird occurrence in GAMMs generally improved the ability to accurately predict observed migratory locations, when compared to models with eBird occurrence alone. Using three performance metrics, the eBird + LCP model demonstrated equivalent or superior fit relative to the eBird-only model for 22 of 24 species-season GAMMs. In particular, the integrated index filled in spatial gaps for species with over-water movements and those that migrated over land where there were few eBird sightings, and thus, low predictive ability of eBird occurrence probabilities (e.g., Amazonian rainforest in South America). This methodology of combining individual-based seasonal movement data with temporally dynamic species distribution models provides a comprehensive approach for integrating multiple data types to describe broad-scale spatial patterns of animal movement. Further development and customization of this approach will continue to advance knowledge about the full annual cycle and conservation of migratory birds.

Ecological Applications↗