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USGS2007

Bora event variability and the role of air-sea feedback

A two-way interacting high resolution numerical simulation of the Adriatic Sea using the Navy Coastal Ocean Model (NCOM) and Coupled Ocean/ Atmosphere Mesoscale Prediction System (COAMPS??) was conducted to improve forecast momentum and heat flux fields, and to evaluate surface flux field differences for two consecutive bora events during February 2003. (COAMPS?? is a registered trademark of the Naval Research Laboratory.) The strength, mean positions and extensions of the bora jets, and the atmospheric conditions driving them varied considerably between the two events. Bora 1 had 62% stronger heat flux and 51% larger momentum flux than bora 2. The latter displayed much greater diurnal variability characterized by inertial oscillations and the early morning strengthening of a west Adriatic barrier jet, beneath which a stronger west Adriatic ocean current developed. Elsewhere, surface ocean current differences between the two events were directly related to differences in wind stress curl generated by the position and strength of the individual bora jets. The mean heat flux bias was reduced by 72%, and heat flux RMSE reduced by 30% on average at four instrumented over-water sites in the two-way coupled simulation relative to the uncoupled control. Largest reductions in wind stress were found in the bora jets, while the biggest reductions in heat flux were found along the north and west coasts of the Adriatic. In bora 2, SST gradients impacted the wind stress curl along the north and west coasts, and in bora 1 wind stress curl was sensitive to the Istrian front position and strength. The two-way coupled simulation produced diminished surface current speeds of ???12% over the northern Adriatic during both bora compared with a one-way coupled simulation. Copyright 2007 by the American Geophysical Union.

Journal of Geophysical Research C: Oceans↗

USGS2010

Emerging themes in the ecology and management of North American forests

The 7th North American Forest Ecology Workshop, consisting of 149 presentations in 16 oral sessions and a poster session, reflected a broad range of topical areas currently under investigation in forest ecology and management. There was an overarching emphasis on the role of disturbance, both natural and anthropogenic, in the dynamics of forest ecosystems, and the recognition that legacies from past disturbances strongly influence future trajectories. Climate was invoked as a major driver of ecosystem change. An emphasis was placed on application of research findings for predicting system responses to changing forest management initiatives. Several “needs” emerged from the discussions regarding approaches to the study of forest ecosystems, including (1) consideration of variable spatial and temporal scales, (2) long-term monitoring, (3) development of universal databases more encompassing of time and space to facilitate meta-analyses, (4) combining field studies and modeling approaches, (5) standardizing methods of measurement and assessment, (6) guarding against oversimplification or overgeneralization from limited site-specific results, (7) greater emphasis on plant-animal interactions, and (8) better alignment of needs and communication of results between researchers and managers.

International Journal of Forestry Research↗

USGS2004

Effects of housing density and cage floor space on C57BL/6J mice

The Guide for the Care and Use of Laboratory Animals (the Guide) is widely accepted as the housing standard by most Institutional Animal Care and Use Committees. The recommendations are based on best professional judgment rather than experimental data. Current efforts are directed toward replacing these guidelines with data-driven, species-appropriate standards. Our studies were undertaken to determine the optimum housing density for C57BL/6J mice, the most commonly used inbred mouse strain. Four-week-old mice were housed for 8 weeks at four densities (the recommended ???12 in2 [ca. 77.4 cm 2]/mouse down to 5.6 in2 [ca. 36.1 cm2]/mouse) in three cage types with various amounts of floor space. Housing density did not affect a variety of physiologic parameters but did affect certain micro-environmental parameters, although these remained within accepted ranges. A second study was undertaken housing C57BL/6J mice with as little as 3.2 in2/mouse (ca. 20.6 cm2). The major effect was elevated ammonia concentrations that exceeded limits acceptable in the workplace at increased housing densities; however, the nasal passages and eyeballs of the mice remained microscopically normal. On the basis of these results, we conclude that C57BL/6J mice as large as 29 g may be housed with 5.6 in2 of floor space per mouse. This area is approximately half the floor space recommended in the Guide. The role of the Guide is to ensure that laboratory animals are well treated and housed in a species-appropriate manner. Our data suggest that current policies could be altered in order to provide the optimal habitation conditions matched to this species' social needs. Copyright 2004 by the American Association for Laboratory Animal Science.

Comparative Medicine↗

USGS1998

North American landscape characterization project: The production of a continental scale three-decade Landsat data set

The North American Landscape Characterization (NALC) project is a component of the National Aeronautics and Space Administration (NASA) Landsat Pathfinder program. Pathfinder projects are focused on the investigation of global change utilizing current remote sensing technologies. The NALC project is a cooperative effort between the U. S. Environmental Protection Agency (EPA), the U.S. Geological Survey (USGS), and NASA to make Landsat data available to the widest possible user community for scientific research and general public interest. The NALC project is principally funded by the EPA Office of Research and Development and the USGS's Earth Resources Observation Systems (EROS) Data Center (EDC). The objectives of the NALC project are to produce standardized remote sensing data sets, develop standardized analysis methods, and derive standardized land cover change products for a large portion of the North American continent (the conterminous United States and Mexico) (Lunetta and Sturdevant, 1993). The standard product is the NALC “triplicate”;, consisting of co‐registered Landsat multispectral scanner data for the years 1973, 1986, and 1991 (plus or minus one year), plus co‐registered 3 arcsecond digital terrain elevation data. Processing began with the 1986 scene, which was precision corrected (with full terrain correction) to a 60 meter Universal Transverse Mercator base. Automated cross‐correlation procedures were used to co‐register the 1970's and 1990's data to the 1980's base, and independent verifications of registration quality were performed on all triplicate components. The pertinent metadata were compiled in a relational database, which includes WRS2 path/rows, scene ID's, image dates, solar azimuth and elevation, verification RMSE's, and the number of verification control points. NALC triplicate data sets are being used for a number of applications, including the analysis of urbanization patterns, dynamics of climatic fluctuations, deforestation studies, and vegetation classification and mapping. These data are being distributed through the Earth Observing System Data and Information System (EOSDIS) Information Management System (IMS) at a cost of $15(U.S.) for each triplicate.

Geocarto International↗

USGS2021

Environmental conditions associated with occurrences of the threatened Yaqui Catfish in the Yaqui River Basin, Mexico

The Yaqui Catfish Ictalurus pricei is an understudied species, with limited information available on its ecology, distribution, and local habitat use. Native to the southwestern United States and northwestern Mexico, Yaqui Catfish populations are declining, which has prompted listing of the species as threatened in the United States and as a species of concern in Mexico. Water overallocation, habitat degradation, invasive species introductions, and hybridization with nonnative Channel Catfish I . punctatus have caused the populations in Mexico to decline. The United States population collapsed after years of low recruitment. To better focus conservation efforts as well as define habitat associated with Yaqui Catfish occurrences, we assessed the distribution in the Yaqui River basin of Mexico by using historical data at a landscape scale. Yaqui Catfish were historically found across the watershed among a diversity of environments but were most frequently associated with small, intermittent streams. Basin land cover was dominated by forest, shrubland, and grassland, and Yaqui Catfish generally occurred in stream segments at similar proportions. However, a small number of Yaqui Catfish occurrences were associated with urban and cropland land cover types in proportions greater than the availability of those categories on the landscape. With the species facing declines in the region, this work will help to inform future conservation efforts aimed at securing the Yaqui Catfish, protecting suitable habitat, and better defining its current status in Mexico.

Yaqui River Basin↗

USGS2004

In-situ measurements of velocity structure within turbidity currents

Turbidity currents are thought to be the main mechanism to move ???500,000 m3 of sediments annually from the head of the Monterey Submarine Canyon to the deep-sea fan. Indirect evidence has shown frequent occurrences of such turbidity currents in the canyon, but the dynamic properties of the turbidity currents such as maximum speed, duration, and dimensions are still unknown. Here we present the first-ever in-situ measurements of velocity profiles of four turbidity currents whose maximum along-canyon velocity reached 190 cm/s. Two turbidity currents coincided with storms that produced the highest swells and the biggest stream flows during the year-long deployment. Copyright 2004 by the American Geophysical Union.

Geophysical Research Letters↗

USGS2009

Large-scale studies of marked birds in North America

The first large-scale, co-operative, studies of marked birds in North America were attempted in the 1950s. Operation Recovery, which linked numerous ringing stations along the east coast in a study of autumn migration of passerines, and the Preseason Duck Ringing Programme in prairie states and provinces, conclusively demonstrated the feasibility of large-scale projects. The subsequent development of powerful analytical models and computing capabilities expanded the quantitative potential for further large-scale projects. Monitoring Avian Productivity and Survivorship, and Adaptive Harvest Management are current examples of truly large-scale programmes. Their exemplary success and the availability of versatile analytical tools are driving changes in the North American bird ringing programme. Both the US and Canadian ringing offices are modifying operations to collect more and better data to facilitate large-scale studies and promote a more project-oriented ringing programme. New large-scale programmes such as the Cornell Nest Box Network are on the horizon.

Bird Study↗

USGS1993

Forecasting contributions of lake whitefish year-classes to a Lake Superior commercial fishery from estimates of yearling abundance

We developed a simple linear regression model to forecast year-class contributions of lake whitefish Coregonus clupeaformis to the commercial harvest in the Apostle Islands region of Lake Superior. We indexed year-class strength from catches of yearling fish in bottom trawl samples. Recruitment of each year-class was measured by its relative abundance in the fishery at age 6. The relation between recruitment to the commercial fishery and year-class strength indices was positive and significant ( r 2 = 0.67, P < 0.01). The model produced reliable estimates of recruitment to the fishery within the range of the regression. Projected recruitment of the 1983–1987 year-classes to the fishery in 1989-1993 should be sufficient to sustain current levels of harvest through 1993.

North American Journal of Fisheries Management↗

USGS2008

Changes in consumption by alewives and lake whitefish after dreissenid mussel invasions in Lakes Michigan and Huron

Growth of alewives Alosa pseudoharengus and lake whitefish Coregonus clupeaformis has declined since the arrival and spread of dreissenid mussels in Lakes Michigan and Huron. Alewives are the main forage for the salmonids in Lake Michigan, and lake whitefish are the most important commercial species in both lakes. Bioenergetics modeling was used to determine consumption by the average individual fish before and after the dreissenid invasion and to provide insight into the invasion's effects on fish growth and food web dynamics. Alewives feed on both Zooplankton and benthic macroinvertebrates, and lake whitefish are benthivores. Annual consumption of zooplankton by an average alewife in Lake Michigan was 37% lower and consumption of benthic macroinvertebrates (amphipods Diporeia spp., opossum shrimp Mysis relicta, and Chironomidae) was 19% lower during the postinvasion period (1995-2005) than during the preinvasion period (1983-1994). Reduced consumption by alewives corresponded with reduced alewife growth. In Lakes Michigan and Huron, consumption of nonmollusk macroinvertebrates (Diporeia spp., opossum shrimp, Chironomidae) by the average lake whitefish was 46-96% lower and consumption of mollusks (mainly dreissenids and gastropods) was 2-5 times greater during the postinvasion period than during the preinvasion period. Even though total food consumption by lake whitefish did not differ between the two periods in Lake Huron or the Southern Management Unit in Lake Michigan, postinvasion weight at age was at least 38% lower than preinvasion weight at age. Under the current postinvasion diet regime, consumption by lake whitefish would have to increase by up to 122% to achieve preinvasion growth rates. ?? Copyright by the American Fisheries Society 2008.

North American Journal of Fisheries Management↗

USGS2008

Regional nitrate and pesticide trends in ground water in the eastern San Joaquin Valley, California

Protection of ground water for present and future use requires monitoring and understanding of the mechanisms controlling long-term quality of ground water. In this study, spatial and temporal trends in concentrations of nitrate and pesticides in ground water in the eastern San Joaquin Valley, California, were evaluated to determine the long-term effects of agricultural and urban development on regional ground-water quality. Trends in concentrations of nitrate, the nematocide 1,2-dibromo-3-chloropropane, and the herbicide simazine during the last two decades are generally consistent with known nitrogen fertilizer and pesticide use and with the position of the well networks in the regional ground-water flow system. Concentrations of nitrate and pesticides are higher in the shallow part of the aquifer system where domestic wells are typically screened, whereas concentrations are lower in the deep part of the aquifer system where public-supply wells are typically screened. Attenuation processes do not seem to significantly affect concentrations. Historical data indicate that concentrations of nitrate have increased since the 1950s in the shallow and deep parts of the aquifer system. Concentrations of nitrate and detection of pesticides in the deep part of the aquifer system will likely increase as the proportion of highly affected water contributed to these wells increases with time. Because of the time of travel between the water table and the deep part of the aquifer system, current concentrations in public-supply wells likely reflect the effects of 40- to 50-yr-old management practices. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Conference Paper↗

USGS1993

Wolf nipple measurements as indices of age and breeding status

We measured nipple sizes of 29 captive wolves ( Canis lupus ), of known breeding histories, throughout the year and tested distinctions among various known breeding statuses of 20 wild wolves examined in northeastern Minnesota from May through September. For ca. 8 mo of the year only breeders and nonbreeders can be classified. Distinctions between current and former breeders were not reliable.

American Midland Naturalist↗

USGS2006

Evolution of the CD4 family: teleost fish possess two divergent forms of CD4 in addition to lymphocyte activation gene-3

The T cell coreceptor CD4 is a transmembrane glycoprotein belonging to the Ig superfamily and is essential for cell-mediated immunity. Two different genes were identified in rainbow trout that resemble mammalian CD4. One (trout CD4) encodes four extracellular Ig domains reminiscent off mammalian CD4, whereas the other (CD4REL) codes for two Ig domains. Structural motifs within the amino acid sequences suggest that the two Ig domains of CD4REL duplicated to generate the four-domain molecule of CD4 and the related gene, lymphocyte activation gene-3. Here we present evidence that both of these molecules in trout are homologous to mammalian CD4 and that teleosts encode an additional CD4 family member, lymphocyte activation gene-3, which is a marker for activated T cells. The syntenic relationships of similar genes in other teleost and non-fish genomes provide evidence for the likely evolution of CD4-related molecules in vertebrates, with CD4REL likely representing the primordial form in fish. Expression of both CD4 genes is highest in the thymus and spleen, and mRNA expression of these genes is limited to surface IgM- lymphocytes, consistent with a role for T cell functionality. Finally, the intracellular regions of both CD4 and CD4REL possess the canonical CXC motif involved in the interaction off CD4 with p56LCK, implying that similar mechanisms for CD4 + T cell activation are present in all vertebrates. Our results therefore raise new questions about T cell development and functionality in lower vertebrates that cannot be answered by current mammalian models and, thus, is of fundamental importance for understanding the evolution of cell-mediated immunity in gnathosomes. Copyright ?? 2006 by The American Association of Immunologists, Inc.

Journal of Immunology↗

USGS2001

Effects of exotic species on Yellowstone's grizzly bears

Humans have affected grizzly bears ( Ursus arctos horribilis ) by direct mortality, competition for space and resources, and introduction of exotic species. Exotic organisms that have affected grizzly bears in the Greater Yellowstone Area include common dandelion ( Taraxacum officinale ), nonnative clovers ( Trifolium spp.), domesticated livestock, bovine brucellosis ( Brucella abortus ), lake trout ( Salvelinus namaycush ), and white pine blister rust ( Cronartium ribicola ). Some bears consume substantial amounts of dandelion and clover. However, these exotic foods provide little digested energy compared to higher-quality bear foods. Domestic livestock are of greater energetic value, but use of this food by bears often leads to conflicts with humans and subsequent increases in bear mortality. Lake trout, blister rust, and brucellosis diminish grizzly bears foods. Lake trout prey on native cutthroat trout ( Oncorhynchus clarkii ) in Yellowstone Lake; white pine blister rust has the potential to destroy native whitebark pine ( Pinus albicaulis ) stands; and management response to bovine brucellosis, a disease found in the Yellowstone bison (Bison bison) and elk ( Cervus elaphus ), could reduce populations of these 2 species. Exotic species will likely cause more harm than good for Yellowstone grizzly bears. Managers have few options to mitigate or contain the impacts of exotics on Yellowstone's grizzly bears. Moreover, their potential negative impacts have only begun to unfold. Exotic species may lead to the loss of substantial highquality grizzly bear foods, including much of the bison, trout, and pine seeds that Yellowstone grizzly bears currently depend upon.

Wyoming↗

USGS2014

Habitat characteristics of North American tortoises

North American tortoises are distributed in semi-arid and temperate deserts and coastal regions of the southern United States and Mexico. The five species currently recognized each have specific habitat requirements, which they fulfill through their selection of, and interaction with unique habitat constituents. In this chapter we discuss the physiographic and geological associations, perennial and annual vegetation components, shelter sites, and climatic conditions associated with the species’ habitats, as well as the potential threats to their habitat.

Book chapter↗

USGS2006

Temporal-spatial distribution of American bison (Bison bison) in a tallgrass prairie fire mosaic

Fire and bison (Bison bison) are thought to be historically responsible for shaping prairie vegetation in North America. Interactions between temporal-spatial distributions of bison and prescribed burning protocols are important in current restoration of tallgrass prairies. We examined dynamics of bison distribution in a patch-burned tallgrass prairie in the south-central United States relative to bison group size and composition, and burn age and temporal distribution. Bison formed larger mixed groups during summer and smaller sexually segregated groups the rest of the year, and bison selected dormant-season burn patches in the 1st posture growing season most often during spring and summer. Large bison herds selecting recently burned areas resulted in seasonally variable and concentrated grazing pressure that may substantially alter site-specific vegetation. These dynamics must be considered when reintroducing bison and fire into tallgrass prairie because variable outcomes of floral richness and structural complexity are likely depending on temporal-spatial distribution of bison. ?? 2006 American Society of Mammalogists.

Journal of Mammalogy↗

USGS2011

Gas shale/oil shale

The production of natural gas from shales continues to increase in North America, and shale gas exploration is on the rise in other parts of the world since the previous report by this committee was published by American Association of Petroleum Geologists, Energy Minerals Division (2009). For the United States, the volume of proved reserves of natural gas increased 11% from 2008 to 2009, the increase driven largely by shale gas development (Energy Information Administration 2010c). Furthermore, shales have increasingly become targets of exploration for oil and condensate as well as gas, which has served to greatly expand their significance as ‘‘unconventional’’ petroleum reservoirs. This report provides information about specific shales across North America and Europe from which gas (biogenic or thermogenic), oil, or natural gas liquids are produced or is actively being explored. The intent is to reflect the recently expanded mission of the Energy Minerals Division (EMD) Gas Shales Committee to serve as a single point of access to technical information on shales regardless of the type of hydrocarbon produced from them. The contents of this report were drawn largely from contributions by numerous members of the EMD Gas Shales Advisory Committee, with much of the data being available from public websites such as state or provincial geological surveys or other public institutions. Shales from which gas or oil is being produced in the United States are listed in alphabetical order by shale name. Information for Canada is presented by province, whereas for Europe, it is presented by country.

Natural Resources Research↗

USGS2009

Northern Monterey Bay upwelling shadow front: Observations of a coastally and surface-trapped buoyant plume

During the upwelling season in central California, northwesterly winds along the coast produce a strong upwelling jet that originates at Point A??o Nuevo and flows southward across the mouth of Monterey Bay. A convergent front with a mean temperature change of 3.77 ?? 0.29??C develops between the warm interior waters and the cold offshore upwelling jet. To examine the forcing mechanisms driving the location and movement of the upwelling shadow front and its effects on biological communities in northern Monterey Bay, oceanographic conditions were monitored using cross-shelf mooring arrays, drifters, and hydrographic surveys along a 20 km stretch of coast extending northwestward from Santa Cruz, California, during the upwelling season of 2007 (May-September). The alongshore location of the upwelling shadow front at the northern edge of the bay was driven by: regional wind forcing, through an alongshore pressure gradient; buoyancy forces due to the temperature change across the front; and local wind forcing (the diurnal sea breeze). The upwelling shadow front behaved as a surface-trapped buoyant current, which is superimposed on a poleward barotropic current, moving up and down the coast up to several kilometers each day. We surmise that the front is advected poleward by a preexisting northward barotropic current of 0.10 m s -1 that arises due to an alongshore pressure gradient caused by focused upwelling at Point A??o Nuevo. The frontal circulation (onshore surface currents) breaks the typical two-dimensional wind-driven, cross-shelf circulation (offshore surface currents) and introduces another way for water, and the material it contains (e.g., pollutants, larvae), to go across the shelf toward shore.Copyright 2009 by the American Geophysical Union.

Journal of Geophysical Research C: Oceans↗

USGS2003

Genetic variation in black bears in Arkansas and Louisiana using microsatellite DNA markers

In the 1950s and 1960s, translocation projects reintroduced black bears ( Ursus americanus ) from Minnesota and Manitoba to Arkansas and Louisiana. Today, several geographically disconnected populations exist in Arkansas and Louisiana, but their origins are unclear. Some populations may represent a separate subspecies, U. a. luteolus , which is federally protected. We characterized 5 microsatellite loci in 5 isolated populations in Arkansas and Louisiana and compared them with genotypes from Minnesota. Our data indicate that bears of the Ozark and Ouachita mountains of Arkansas, an inland area of Louisiana, and those of Minnesota are similar in overall genetic diversity and allele frequencies, consistent with these populations being wholly or mostly descended from bears from the reintroduction programs. In contrast, bears from southeastern Arkansas and the coastal region of Louisiana genetically are more restricted and homogeneous. Because they exhibit a limited set of genotypes found in the other black bear populations, they represent isolated fragments of a single North American black bear population. Furthermore, genetic distance estimates indicate that the bears in southeastern Arkansas are more genetically distinct from bears in Louisiana, which are currently federally protected.

Arkansas, Louisiana↗