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At least 181 records · Page 10Linked to original sources
USGS2013

Water quality of streams draining abandoned and reclaimed mined lands in the Kantishna Hills area, Denali National Park and Preserve, Alaska, 2008–11

The Kantishna Hills are an area of low elevation mountains in the northwest part of Denali National Park and Preserve, Alaska. Streams draining the Kantishna Hills are clearwater streams that support several species of fish and are derived from rain, snowmelt, and subsurface aquifers. However, the water quality of many of these streams has been degraded by mining. Past mining practices generated acid mine drainage and excessive sediment loads that affected water quality and aquatic habitat. Because recovery through natural processes is limited owing to a short growing season, several reclamation projects have been implemented on several streams in the Kantishna Hills region. To assess the current water quality of streams in the Kantishna Hills area and to determine if reclamation efforts have improved water quality, a cooperative study between the U.S. Geological Survey and the National Park Service was undertaken during 2008-11. High levels of turbidity, an indicator of high concentrations of suspended sediment, were documented in water-quality data collected in the mid-1980s when mining was active. Mining ceased in 1985 and water-quality data collected during this study indicate that levels of turbidity have declined significantly. Turbidity levels generally were less than 2 Formazin Nephelometric Units and suspended sediment concentrations generally were less than 1 milligram per liter during the current study. Daily turbidity data at Rock Creek, an unmined stream, and at Caribou Creek, a mined stream, documented nearly identical patterns of turbidity in 2009, indicating that reclamation as well as natural revegetation in mined streams has improved water quality. Specific conductance and concentrations of dissolved solids and major ions were highest from streams that had been mined. Most of these streams flow into Moose Creek, which functions as an integrator stream, and dilutes the specific conductance and ion concentrations. Calcium and magnesium are the dominant cations, and bicarbonate and sulfate are the dominant anions. Water samples indicate that the water from Rock Creek, Moose Creek, Slate Creek, and Eldorado Creek is a calcium bicarbonate-type water. The remaining sites are a calcium sulfate type water. U.S. Environmental Protection Agency guidelines for arsenic and antimony in drinking water were exceeded in water at Slate Creek and Eureka Creek. Concentrations of arsenic, cadmium, chromium, copper, lead, nickel, and zinc in streambed sediments at many sites exceed sediment quality guideline thresholds that could be toxic to aquatic life. However, assessment of these concentrations, along with the level of organic carbon detected in the sediment, indicate that only concentrations of arsenic and chromium may be toxic to aquatic life at many sites. In 2008 and 2009, 104 macroinvertebrate taxa and 164 algae taxa were identified from samples collected from seven sites. Of the macroinvertebrates, 86 percent were insects and most of the algae consisted of diatoms. Based on the National Community Index, Rock Creek, a reference site, and Caribou Creek, and a mined stream that had undergone some reclamation, exhibited the best overall stream conditions; whereas Slate Creek and Friday Creek, two small streams that were mined extensively, exhibited the worst stream conditions. A non-metric multi-dimensional scaling analysis of the macroinvertebrate and algae data showed a distinct grouping between the 2008 and 2009 samples, likely because of differences between a wet, cool summer in 2008 and a dry, warm summer in 2009.

Alaska↗
USGS2017

Comparison of benthos and plankton for Waukegan Harbor Area of Concern, Illinois, and Burns Harbor-Port of Indiana non-Area of Concern, Indiana, in 2015

During two seasonal sampling events in spring (June) and fall (August) of 2015, the U.S. Geological Survey collected benthos (benthic invertebrates) and plankton (zooplankton and phytoplankton) at three sites each in the Waukegan Harbor Area of Concern (AOC) in Illinois and in Burns Harbor-Port of Indiana, a non-AOC comparison site in Indiana. The study was done in cooperation with the U.S. Environmental Protection Agency and the Illinois Department of Natural Resources. Samples were collected concurrently for physical and chemical parameters (specific conductance, temperature, pH, dissolved oxygen, chlorophyll- a , total and volatile suspended solids in water samples; particle size and volatile-on-ignition solids of sediment in dredge samples). The purpose of the study was to assess whether or not aquatic communities at the AOC were degraded in comparison to communities at the non-AOC, which was presumed to be less impaired than the AOC. Benthos were collected by using Hester-Dendy artificial substrate samplers and a Ponar® dredge sampler to collect composited grabs of bottom sediment; zooplankton were collected by using tows from depth to the surface with a 63-micrometer mesh plankton net; phytoplankton were collected by using whole water samples composited from set depth intervals. Aquatic communities at the AOC and the non-AOC were compared by use of univariate statistical analyses with metrics such as taxa richness (number of unique taxa), diversity, and a multimetric Index of Biotic Integrity (IBI, for artificial-substrate samples only) as well as by use of multivariate statistical analyses of taxa relative abundances. Although benthos communities at Waukegan Harbor AOC were not rated as degraded in comparison to the non-AOC, metrics for zooplankton and phytoplankton communities did show some impairment for the 2015 sampling. Across seasons, benthos richness and diversity were significantly higher and rated as less degraded at the AOC compared to the non-AOC; however, benthos IBIs were not significantly different. Multivariate comparisons revealed that the benthos communities in the AOC and non-AOC were significantly different, but these comparisons do not address current degradation in either harbor. The dominant taxa in dredge samples were oligochaete worms in both harbors, but there were differences in the relative abundances of Dreissena as well as oligochaete and midge taxa. Although zooplankton richness and diversity in the AOC were lower and rated as more degraded in spring, these metrics were rated as less degraded in fall compared to the non-AOC, effectively balancing out so that there was no difference across seasons. Multivariate comparisons also indicated that zooplankton communities in the AOC were significantly different from those in the non-AOC for spring only but not across seasons, possibly because of lower water temperatures in spring at Waukegan Harbor than at the non-AOC site. The spring zooplankton community in Waukegan Harbor was dominated in density and biomass by the rotifer Synchaeta . Across seasons, diatom richness was significantly higher and rated as less degraded in the AOC than the non-AOC because of spring values, whereas soft algae richness was significantly lower and rated as more degraded in the AOC because of fall values. Spring richness of combined phytoplankton (soft algae and diatoms) was significantly higher in the AOC than in the non-AOC. Neither diatom diversity nor soft algae diversity differed significantly between the harbors, but combined phytoplankton diversity across seasons, if replicates were included, was significantly lower and rated as more degraded in the AOC than in the non-AOC. Multivariate tests indicated that the combined phytoplankton communities in the harbors were not significantly different across seasons. Significant differences were not found between harbors for chlorophyll- a , suspended solids, algal densities, or biomass.

Illinois, Indiana↗
USGS2018

Simulation of hydrodynamics, water quality, and lake sturgeon habitat volumes in Lake St. Croix, Wisconsin and Minnesota, 2013

Lake St. Croix is a naturally impounded, riverine lake that makes up the last 40 kilometers of the St. Croix River. Substantial land-use changes during the past 150 years, including increased agriculture and urban development, have reduced Lake St. Croix water-quality and increased nutrient loads delivered to Lake St. Croix. A recent (2012–13) total maximum daily load phosphorus-reduction plan set the goal to reduce total phosphorus loads to Lake St. Croix by 20 percent by 2020 and reduce Lake St. Croix algal bloom frequencies. The U.S. Geological Survey, in cooperation with the National Park Service, developed a two-dimensional, carbon-based, laterally averaged, hydrodynamic and water-quality model, CE–QUAL–W2, that addresses the interaction between nutrient cycling, primary production, and trophic dynamics to predict responses in the distribution of water temperature, oxygen, and chlorophyll a. Distribution is evaluated in the context of habitat for lake sturgeon, including a combination of temperature and dissolved oxygen conditions termed oxy-thermal habitat. The Lake St. Croix CE–QUAL–W2 model successfully reproduced temperature and dissolved oxygen in the lake longitudinally (from upstream to downstream), vertically, and temporally over the seasons. The simulated water temperature profiles closely matched the measured water temperature profiles throughout the year, including the prediction of thermocline transition depths (often within 1 meter), the absolute temperature of the thermocline transitions (often within 1.0 degree Celsius), and profiles without a strong thermocline transition. Simulated dissolved oxygen profiles matched the trajectories of the measured dissolved oxygen concentrations at multiple depths over time, and the simulated concentrations matched the depth and slope of the measured concentrations. Additionally, trends in the measured water-quality data were captured by the model simulation, gaining some potential insights into the underlying mechanisms of critical Lake St. Croix metabolic processes. The CE–QUAL–W2 model tracked nitrate plus nitrite, total nitrogen, and total phosphorus throughout the year. Inflow nutrient contributions (loads), largely dominated by upstream St. Croix River loads, were the most important controls on Lake St. Croix water quality. Close to 60 percent of total phosphorus to the lake was from phosphorus derived from organic matter, and about 89 percent of phosphorus to Lake St. Croix was delivered by St. Croix River inflows. The Lake St. Croix CE–QUAL–W2 model offered potential mechanisms for the effect of external and internal loadings on the biotic response regarding the modeled algal community types of diatoms, green algae, and blue-green algae. The model also suggested the seasonal dominance of blue-green algae in all four pools of the lake. A sensitivity analysis was completed to test the total maximum daily load phosphorus-reduction scenario responses of total phosphorus and chlorophyll a. The modeling indicates that phosphorus reductions would result in similar Lake St. Croix reduced concentrations, although chlorophyll a concentrations did not decrease in the same proportional amounts as the total phosphorus concentrations had decreased. The smaller than expected reduction in algal growth rates highlighted that although inflow phosphorus loads are important, other constituents also can affect the algal response of the lake, such as changes in light penetration and the breakdown of organic matter releasing nutrients. The available habitat suitable for lake sturgeon was evaluated using the modeling results to determine the total volume of good-growth habitat, optimal growth habitat, and lethal temperature habitat. Overall, with the calibrated model, the fish habitat volume in general contained a large proportion of good-growth habitat and a sustained period of optimal growth habitat in the summer. Only brief periods of lethal oxy-thermal habitat were present in Lake St. Croix during the model simulation.

Minnesota, Wisconsin↗
USGS2023

Interaction of a legacy groundwater contaminant plume with the Little Wind River from 2015 through 2017, Riverton Processing site, Wyoming

The Riverton Processing site was a uranium mill 4 kilometers southwest of Riverton, Wyoming, that prepared uranium ore for nuclear reactors and weapons from 1958 to 1963. The U.S. Department of Energy completed surface remediation of the uranium tailings in 1989; however, groundwater below and downgradient from the tailings site and nearby Little Wind River was not remediated. Beginning in 2010, a series of floods along the Little Wind River began to mobilize contaminants in the unsaturated zone, resulting in substantial increases of uranium and other contaminants of concern in monitoring wells completed inside the contaminant plume. In 2011, the U.S. Department of Energy started a series of university and Government agency retrospective and field investigations to understand the processes controlling contaminant increases in the groundwater plume. The goals of the field investigations described in this report were to (1) identify and quantify the contaminant flux and potential associated biological effects from groundwater associated with the legacy plume as it enters a perennial stream reach, and (2) assess chemical exposure and potential effects to biological receptors from the interaction of the contaminant plume and the river. Field investigations along the Little Wind River were completed by the U.S. Geological Survey during 2015–17 in cooperation with the U.S. Department of Energy Office of Legacy Management to characterize: (1) seepage areas and seepage rates; (2) pore-water and bed sediment chemistry and hyporheic exchange and reactive loss; and (3) exposure pathways and biological receptors. All data collected during the study are contained in two U.S. Geological Survey data releases, available at https://doi.org/10.5066/F7BR8QX4 and https://doi.org/10.5066/P9J9VJBR . A variety of tools and methods were used during the field characterizations. Streambed temperature mapping, electrical resistivity tomography, electromagnetic induction, fiber-optic distributed temperature sensing, tube seepage meters, vertical thermal sensor arrays, and an environmental tracer (radon) were used to identify areas of groundwater seepage and associated seepage rates along specific sections of the study reach of the river. Drive points, minipiezometers, diffusive equilibrium in thin-film/diffusive gradients in thin-film probes, bed-sediment samples, and equal discharge increment sampling methods were used to characterize pore-water chemistry, estimate hyporheic exchange and reactive loss of selected chemical constituents, and quantify contaminant loadings entering the study reach. Sampling and analysis of surface sediments, filamentous algae, periphytic algae, and macroinvertebrates were used to characterize biological exposure pathways, metal uptake, and receptors. Areas of focused groundwater discharge identified by the fiber-optic distributed temperature sensing surveys corresponded closely with areas of elevated electrical conductivity identified by the electromagnetic induction survey results in the top 5 meters of sediment. During three monitoring periods in 2016, the mean vertical seepage rate measured with tube seepage meters was 0.45 meter per day, ranging from −0.02 to 1.55 meters per day. Five of the 11 locations where vertical thermal profile data were collected along the study reach during August 2017 indicated mean upwelling values ranging from 0.11 to 0.23 meter per day. Radon data collected from the Little Wind River during June, July, and August 2016 indicated a consistent inflow of groundwater to the central part of the study reach, in the area congruous with the center of the previously mapped groundwater plume discharge zone. During August 2017, the greatest attenuation of uranium from reactive loss in pore-water samples was observed at three locations along the study reach, at depths between 6 and 15 centimeters, and similar trends in molybdenum attenuation were also observed. Bed-sediment concentration profiles collected during 2017 also indicated attenuation of uranium and molybdenum from groundwater during hyporheic mixing of surface water with the legacy plume during groundwater upwelling into the river. Streamflow measurements combined with equal discharge increment water sampling along the study reach indicated an increase in dissolved uranium concentrations in the downstream direction during 2016 and 2017. Net uranium load entering the Little Wind River study reach was about 290 and 435 grams per day during 2016 and 2017, respectively. Biological samples indicated that low levels of uranium and molybdenum exposure were confined to the benthos in the Little Wind River within and immediately downstream from the perimeter of the groundwater plume. Concentrations of molybdenum and uranium in filamentous algae were consistently low at all sites in the study reach with no indication of increased exposure of dissolved bioavailable molybdenum or uranium at sites next to or downstream from the groundwater plume. Comparison of the August 2017 results from electromagnetic induction, tube seepage meters, vertical thermal profiling, and pore-water chemistry surveys were in general agreement in identifying areas with upwelling groundwater conditions along the study reach. However, the electroconductivity values measured with electromagnetic induction in the top 100 centimeters of sediment did not agree with sodium concentrations measured in pore-water samples collected at similar streambed depths. Differences and similarities between multiple methods can result in additional insights into hydrologic and biogeochemical processes that may be occurring along a reach of a river system interacting with shallow groundwater inputs. It may be advantageous to apply a variety of geophysical, geochemical, hydrologic, and biological tools at other Uranium Mill Tailings Remedial Action ( https://www.energy.gov/sites/prod/files/2014/10/f19/UMTRCA.pdf ) sites during the investigation of legacy contaminant plume interactions with surface-water systems.

Wyoming↗
USGS2002

Relation of Environmental characteristics to the composition of aquatic assemblages along a gradient of urban land use in New Jersey, 1996-98

Community data from 36 watersheds were used to evaluate the response of fish, invertebrate, and algal assemblages in New Jersey streams to environmental characteristics along a gradient of urban land use that ranged from 3 to 96 percent. Aquatic assemblages were sampled at 36 sites during 1996-98, and more than 400 environmental attributes at multiple spatial scales were summarized. Data matrices were reduced to 43, 170, and 103 species of fish, invertebrates, and algae, respectively, by means of a predetermined joint frequency and relative abundance approach. White sucker (Catostomus commersoni) and Tessellated darter (Etheostoma olmstedi) were the most abundant fishes, accounting for more than 20 and 17 percent, respectively, of the mean abundance. Net-spinning caddisflies (Hydropsychidae) were the most commonly occurring benthic invertebrates and were found at all but one of the 36 sampling sites. Blue-green (for example, Calothrix sp. and Oscillatoria sp.) and green (for example, Protoderma viride) algae were the most widely distrib-uted algae; however, more than 81 percent of the algal taxa collected were diatoms. Principal-component and correlation analyses were used to reduce the dimensionality of the environmental data. Multiple linear regression analysis of extracted ordination axes then was used to develop models that expressed effects of increasing urban land use on the structure of aquatic assemblages. Significant environmental variables identified by using multiple linear regression analysis then were included in a direct gradient analysis. Partial canonical correspondence analysis of relativized abundance data was used to restrict further the effects of residual natural variability, and to identify relations among the environmental variables and the structure of fish, invertebrate, and algal assemblages along an urban land-use gradient. Results of this approach, combined with the results of the multiple linear regression analyses, were used to identify human population density (311-37,594 persons/km2), amount and type of impervious surface cover (0.12-1,350 km2), nutrient concentrations (for example, 0.01-0.29 mg/L of phosphorus), hydrologic instability (for example, 100-8,955 ft3/s for 2-year peak flow), the amount of forest and wetlands in a basin (0.01-6.25 km2), and substrate quality (0-87 percent cobble substrate) as variables that are highly correlated with aquatic-assemblage structure. Species distributions in ordination space clearly indicate that tolerant species are more abundant in the streams impaired by urbanization and sensitive taxa are more closely associated with the least impaired basins. The distinct differences in aquatic assemblages along the urban land-use gradient demonstrate the deleterious effects of urbanization on assemblage structure and indicate that conserving landscape attributes that mitigate anthropogenic influences (for example, stormwater-management practices emphasizing infiltration and preservation of existing forests, wetlands, and riparian corridors) will help to maintain the relative abundance of sensitive taxa. Complementary multiple linear regression models indicate that aquatic community indices were correlated with many of the anthropogenic factors that were found to be significant along the urban land-use gradient. These indices appear to be effective in differentiating the moderately and severely impaired streams from the minimally impaired streams. Evaluation of disturbance thresholds for aquatic assemblages indicates that moderate to severe impairment is detectable in New Jersey streams when impervious surface cover in the drainage basin reaches approximately 18 percent.

Water-Resources Investigations Report↗
USGS1980

The effects of using ground water to maintain water levels of Cedar Lake, Wisconsin

Cedar Lake, a kettle lake with no surface inlet or outlet, was studied to evaluate the feasibility of maintaining water levels of lakes in the glaciated kettle moraine area of eastern Wisconsin by pumping ground water into them. The general hydrogeology of the area around the lake was defined and the hydrology of the lake was studied in detail. There are two aquifer systems in the Cedar Lake area, and in general, throughout eastern Wisconsin. The shallow aquifer system is composed of unconsolidated glacial drift of Quaternary age and consolidated bedrock of Silurian age. Cedar Lake is located in a local recharge area within this system. The saturated thicknesses of the glacial drift and Silurian dolomite beneath the lake are approximately 100 feet and 500 feet, respectively. This aquifer system is separated from an underlying aquifer system by a layer of shale approximately '200 feet thick that forms an effective barrier to water movement. The deep aquifer system is composed of dolomites and sandstones of Ordovician and Cambrian age whose composite thickness is 600 to 650 feet. A water budget was prepared to quantify the components of the hydrologic system of Cedar Lake. Inflow to the lake averaged approximately ^5 inches per water year for the 2-year period October 197^ through September 1976. Inflow consisted of precipitation on the lake surface (28 inches), groundwater seepage to the lake (2 inches), and overland flow (15 inches) to the lake. Outflow averaged approximately U9 inches per year for the same 2- year period. Outflow consisted of evaporation (31 inches) from the lake surface and ground-water seepage from the lake (18 inches). A volume of water equivalent to that needed to raise the lake level 1*7 inches was pumped from the shallow aquifer system into Cedar Lake between February 1 and September 30, 1977. The water budget for the lake during this period indicated that approximately 90 percent of pumped water was either recycled from the lake to the well or otherwise lost as seepage from the lake. Selected physical and chemical characteristics of the lake water were measured periodically between October 197^ and September 1977- The water temperature ranged between 26°C in August to approximately 2°C in December during each year of the study. The dissolved-oxygen concentration of the water ranged from 13 milligrams per liter at the time ice cover first developed in December to h milligrams per liter at the time ice cover broke up the following April. The total nitrogen concentration of the water varied from 1.0 milligrams per liter during winter to 0.5 milligrams per liter during summer. The total phosphorus concentration of the water was fairly uniform throughout the year, averaging 0.01 milligrams per liter. The phytoplankton population was sampled periodically. The total phytoplankton count was small during winter, generally less than 250 cells per milliliter. These phytoplankton were composed of euglenoids, diatoms, green algae, and blue-green algae. The count increased to 50,000 to 100,000 cells per milliliter during summer. One or two species of blue-green algae dominated during these times. There were no identifiable changes in measured physical and chemical characteristics of lake water during sustained pumping of ground water into the lake, nor were there identifiable changes in the number or makeup of the phytoplankton community. Differences in physical and chemical characteristics of lake water and ground water added to the lake probably were not great enough to cause changes within the lake.

Wisconsin↗
USGS1983

Water quality of Lake Arlington on Village Creek, north-central Texas; 1973 to 1981

Water in Lake Arlington on Village Creek in north-central Texas had volume-weighted average concentrations of less than 240 milligrams per liter of dissolved solids, less than 30 milligrams per liter of dissolved chloride, and less than 40 milligrams per liter of dissolved sulfate between January 29, 1973, and August 20, 1981. The water was moderately hard (hardness greater than 60 but less than 120 milligrams per liter as calcium carbonate). The concentrations of each of these constituents were usually greatest during winter, especially during the first few years of the study, but decreased significantly as discharges of municipal wastes were systematically and progressively diverted to treatment facilities downstream from the reservoir. Thermal stratification in Lake Arlington usually begins during March or April and persists until October. Thermal stratification has resulted in significant seasonal and areal variations in the concentration of dissolved oxygen, dissolved iron, dissolved manganese, total inorganic nitrogen, and total phosphorus. Oxygen utilized in the decay of organic matter is not replenished during periods of summer stagnation, and water below depths of 30 to 40 feet usually contains less than 2 milligrams per liter of dissolved oxygen during stagnation. Even though heated effluent from an electrical generating plant is returned to the reservoir at site GC and causes an elevation of water temperature, average dissolved oxygen levels at this site are not significantly different from levels at other sites. During summer stagnation, reducing conditions result in the dissolution of iron and manganese from bottom deposits at deep sites in the reservoir. At site AQ, a deep site near Arlington Dam, dissolved iron concentrations in water near the bottom during summer stagnation ranged from less than 10 to 1,100 micrograms per liter and averaged about 640 micrograms per liter. Dissolved manganese concentrations near the bottom at site AC during summer staynation ranged from 20 to 2,700 micrograms per liter and averaged about 1,500 micrograms per liter. The concentrations of dissolved iron and dissolved manganese in water throughout the reservoir during winter circulation and in water near the reservoir surface during summer stagnation averaged less than 50 micrograms per liter. Seasonal temperature and dissolved oxygen cycles resulted in the recycling of dissolved iron and dissolved manganese between the water and bottom sediments. However, no significant accumulation of these constituents within the reservoir was detected during the study. The concentrations of total inorganic nitrogen and total phosphorus are greatest during summer stagnation in water near the bottom at deep sites. At site AC during the summer, the concentrations of total inorganic nitrogen in the hypolimnion averaged about 0.9 milligram per liter, and the concentration of total phosphorus near the bottom averaged about 0.2 milligram per liter. The concentrations of total inorganic nitrogen in the epilimnion at site AC averaged about 0.1 milligram per liter; the concentrations of total phosphorus averaged less than 0.1 milligram per liter. The densities and composition of algal populations varied seasonally. At site AC, total algae counts ranged from 200 to 240,000 cells per mi Hi liter and averaged about 50,000 cells per milliliter. At site FC, total algae counts ranged from 1,000 to 290,000 cells per milliliter and averaged about 56,000 cells per milliliter. Algal densities were greatest during the summer with blue-green algae being the predominant phyla.

Texas↗
USGS1998

Hydrology, water quality, and nutrient loads to the Bauman Park Lake, Cherry Valley, Winnebago County, Illinois, May 1996–April 1997

The Bauman Park Lake occupies a former sand and gravel quarry in the Village of Cherry Valley, Illinois. The lake is eutrophic, and nuisance growths of algae and aquatic macrophytes are supported by nutrients (nitrogen and phosphorus) that are derived primarily from ground-water inflow, the main source of water for the lake. The lake has an average depth of about 18 feet, a maximum depth of about 28 feet, and a volume of 466 acre-feet at a stage of about 717 feet above sea level. The lake also is subject to thermal stratification, and although most of the lake is well oxidized, nearly anoxic conditions were present at the lake bottom during part of the summer of 1996. About 734 pounds phosphorus and 4,575 pounds of nitrogen compounds were added to the Bauman Park Lake from May 1996 through April 1997. Phosphorus compounds were derived primarily from inflow from ground water (68.7 percent), sediments derived from shoreline erosion (15.6 percent), internal regeneration (11.7 percent), waterfowl excrement (1.6 percent), direct precipitation and overland runoff (1.2 percent), and particulate matter deposited from the atmosphere (1.2 percent). Nitrogen compounds were derived from inflow from ground water (62.1 percent), internal regeneration (19.6 percent), direct precipitation and overland runoff (10.1 percent), particulate matter deposited from the atmosphere (3.5 percent), sediments derived from shoreline erosion (4.4 percent), and waterfowl excrement (0.3 percent). About 13 pounds of phosphorus and 318 pounds of nitrogen compounds flow out of the lake to ground water. About 28 pounds of nitrogen is removed by denitrification. Algae and aquatic macrophytes utilize nitrate, nitrite, ammonia, and dissolved phosphorus. The availability of dissolved phosphorus in the lake water controls algal growth. Uptake of the nutrients, by aquatic macrophytes and algae, temporarily removes nutrients from the water column but not from the lake basin. Because the amount of nutrients entering the lake greatly exceeds the amount leaving, the nutrients are concentrated in the sediments at the lake bottom, where they can be used by the rooted aquatic macrophytes and released to the water column when the proper geochemical conditions are present.

Illinois↗
USGS2023

Mass mortality of collector urchins Tripneustes gratilla in Hawai`i

As grazers, sea urchins are keystone species in tropical marine ecosystems, and their loss can have important ecological ramifications. Die-offs of urchins are frequently described, but their causes are often unclear, in part because systematic examinations of animal tissues at gross and microscopic level are not done. In some areas, urchins are being employed to control invasive marine algae. Here, we describe the pathology of a mortality event in Tripneustes gratilla in Hawai`i where urchins were translocated to control invasive algae. Although we did not determine the cause of the mortality event, our investigation indicates that animals died from inflammation of the test and epidermal ulceration, followed by inability to maintain coelomic fluid volume, colonization of coelomic fluid by opportunists (diatom, algae), and inappetence. Parasites, bacteria, fungi, and viruses were not evident as a primary cause of death. Pathology was suggestive of a toxin or other environmental cause such as lack of food, possibilities that could be pursued in future investigations. These findings highlight the need for caution and additional tools to better assess health when translocating marine invertebrates to ensure maximal biosecurity.

Hawaii↗
USGS2008

Species composition and habitat associations of benthic algal assemblages in headwater streams of the Sierra Nevada, California

Despite their trophic importance and potential importance as bioindicators of stream condition, benthic algae have not been well studied in California. In particular there are few studies from small streams in the Sierra Nevada. The objective of this study was to determine the standing crop of chlorophyll-a and benthic algal species assemblages present in the small 1st- and 2nd-order streams of the Kings River Experimental Watersheds (KREW, watersheds of Bull, Providence, Duff, and Teakettle Creeks) and determine the associations of these measures with stream habitat. We collected samples of benthic algae from rock substrata in September 2002 (7 sites) and 2005 (the same 7 sites plus 5 additional sites). Habitat and water-quality data were collected concurrently. Chlorophyll-a values ranged from 0.2 to 3.2 mg??m-2. Chlorophyll-a in the Bull Creek watershed was generally lower than in the other watersheds. Benthic algal assemblages were dominated by diatoms and cyanobacteria. We collected 79 taxa of diatoms in 2002 and 126 taxa in 2005. Diatom taxa richness in individual samples ranged from 15 to 47. Nonmetric multidimensional scaling analysis of arcsine square-root transformed proportional abundances of diatoms identified 3 groups of sites. Bull Creek sites were generally different from other sites (group 1), and the sites from Bull Creek were different in 2002 (group 2) and 2005 (group 3). Five taxa appeared to be particularly important in distinguishing groups: Achnanthidium minutissimum, Cocconeis placentula, Eunotia incisa, Eunotia pectinalis var. minor, and Planothidium lanceolatum. Elevation, water temperature, pH, specific conductance, and canopy were habitat variables correlated with the differences in diatom assemblages among sites. Our results provide a valuable baseline for future studies of benthic algae in Sierra Nevada headwater streams and will be particularly important in understanding the effects of different forest restoration management strategies being tested in the KREW project.

Western North American Naturalist↗
USGS2000

Sedimentary petrology of a declining reef ecosystem, Florida reef tract (U.S.A.)

Petrologic evaluation of biogenic sediments collected shelf-wide along the Florida reef tract in 1989 revealed three principal components: coral, the calcareous green alga Halimeda, and mollusc. The dominant grain was dependent in part upon local morphology that controlled composition and vitality of the biota. Either Halimeda or mollusc grains prevailed in sands off the upper Keys. In the middle and lower Keys, Halimeda grains prevailed nearshore and coral grains offshore. Comparison with similar analyses of samples collected in 1952 and 1963 indicates that, over 37 years, the relative abundance of molluscan grains more than doubled in the upper Keys and that of particulate coral tripled in the middle Keys. These changes can be interpreted in the context of physical and biological events that affected Florida Keys reefs over that period of time. In the 1970s, outbreaks of extremely cold water killed even representatives of the hardiest coral species. In the 1980s, black-band and white-band diseases decimated the major reef-building acroporid corals, and the pivotal herbivore, Diadema antillarum, disappeared. Although Diadema is a major coral bioeroder, the sea urchin is also essential to healthy reef growth. The increase in coral debris in the middle Keys may be related to Hurricane Donna in 1960, but it is also consistent with the prediction of accelerated bioerosion by boring organisms in response to increased plankton productivity. Plankton productivity is stimulated by nutrients from Florida Bay and by well-documented eutrophication of nearshore environments. In the upper Keys, where reefs are somewhat removed from bay and nearshore influence, a relative decrease in coral debris over the 37 years may reflect proliferation of algae and algae-grazing molluscs as well as suppressed rates of bioerosion in the absence of Diadema. Human activities have substantially increased the natural flux of fixed nitrogen to coastal systems worldwide. Waters in the Florida Keys are no exception. Spatial and temporal trends in sediment constituents are compared to a previously published model that predicts the response of benthic biota to changes in nutrient supply. As adapted to interpret changes observed in reef-tract sediments, the model provides insights into the natural nutrient gradient along the Florida reef tract.

Journal of Coastal Research↗
USGS1974

Comparison of bacterial and phytoplankton populations under natural and laboratory conditions

Bacteria and blue-green algae were isolated from Oneida Lake, N.Y., and other sources. The blue-green algae Anabaena flos-aquae , Anabaena spiroides , Gloeotrichia echinulata , and Microcystis aeruginosa were grown under laboratory conditions and were separated into unialgal cultures. The bacterial population living in association with the unialgal blue-green algae differed significantly from the bacterial flora of Oneida Lake. Bacillus , Pseudomonas , Aeromonas , and Zoogloea were the most frequently occurring genera of bacteria from the lake, whereas Flavobacterium , Achromobacter , and Pseudomonas were the most common bacteria isolated from laboratory blue-green cultures. Nutritional and physiological characteristics of bacteria isolated in the laboratory were more uniform than those isolated from the lake.

Journal of Research of the U.S. Geological Survey↗
USGS1992

Maintenance of the zebra mussel (Dreissena polymorpha) under laboratory conditions

Zebra mussels (Dreissena polymorpha) with a shell length >1 mm are adaptable to laboratory conditions if ammonia levels are low (<1 mg/L) and water temperatures range between 4 and 24 degrees C. The most difficult aspect of maintaining mussels is providing acceptable food that will support growth and survival over a long period of time. Several standard invertebrate foods, such as yeast, bacterial infusions, and live and dried algae were tested for initial acceptance and long-term survival. The mussels accepted and survived best on green algae (either live Chlamydomonas reinhardtii or dried Chlorella sp.). A ration of 3.2 g of algae (dry weight) per 1000 mussels (shell length>10 mm) resulted in an average growth rate of 2 mm/month.

Book chapter↗
USGS2018

Dynamic occupancy modeling of temperate marine fish in area-based closures

Species distribution models (SDMs) are commonly used to model the spatial structure of species in the marine environment, however, most fail to account for detectability of the target species. This can result in underestimates of occupancy, where nondetection is conflated with absence. The site occupancy model (SOM) overcomes this failure by treating occupancy as a latent variable of the model and incorporates a detection submodel to account for variability in detection rates. These have rarely been applied in the context of marine fish and never for the multiseason dynamic occupancy model (DOM). In this study, a DOM is developed for a designated species of concern, cusk ( Brosme brosme ), over a four-season period. Making novel use of a high-resolution 3-dimensional hydrodynamic model, detectability of cusk is considered as a function of current speed and algae cover. Algal cover on the seabed is measured from video surveys to divide the study area into two distinct regions: those with canopy forming species of algae and those without (henceforth bottom types). Modeled estimates of the proportion of sites occupied in each season are 0.88, 0.45, 0.74, and 0.83. These are significantly greater than the proportion of occupied sites measured from underwater video observations which are 0.57, 0.28, 0.43, and 0.57. Individual fish are detected more frequently with increasing current speed in areas lacking canopy and less frequently with increasing current speed in areas with canopy. The results indicate that, where possible, SDM studies for all marine species should take account of detectability to avoid underestimating the proportion of sites occupied at a given study area. Sampling closed areas or areas of conservation often requires the use of nonphysical, low impact sampling methods like camera surveys. These methods inherently result in detection probabilities less than one, an issue compounded by time-varying features of the environment that are rarely accounted for marine studies. This work highlights the use of modeled hydrodynamics as a tool to correct some of this imbalance.

Gulf of Maine↗
USGS2021

Upwelling and the persistence of coral-reef frameworks in the eastern tropical Pacific

In an era of global change, the fate and form of reef habitats will depend on shifting assemblages of organisms and their responses to multiple stressors. Multiphyletic assemblages of calcifying and bioeroding species contribute to a dynamic balance between constructive and erosive processes, and reef-framework growth occurs only when calcium-carbonate deposition exceeds erosion. Each contributing species exhibits a unique combination of environmental sensitivities, trophic needs, and competitive abilities, making the net outcome of their habitat-altering behavior difficult to predict. In this study, standardized blocks of clean, massive Porites were placed at six reef sites in the eastern tropical Pacific, in the strongly and more-weakly upwelling Gulfs of Panamá (GoP) and Chiriquí (GoC), respectively. Sites were chosen to characterize the unique thermal and carbonate-chemistry conditions of each gulf. Satellite products were used to examine differences in sea-surface productivity, and surveys were conducted to quantify the abundance of important grazing taxa. After two years in situ, the Porites blocks were collected and scanned using high-resolution computed tomography to volumetrically quantify both endolithic and epilithic habitat alteration. Scan-volumes were further classified into functional groups according to morphology to quantify external bioerosion by fish and sea urchins, as well as the calcifying and bioeroding activity of crustose coralline algae, scleractinian corals, mollusks, annelids, and barnacles. The GoP, which has higher productivity, cooler temperatures, and periodically lower pH conditions, had higher rates of macroboring, but also higher rates of calcification. These unexpectedly higher rates of calcification in the GoP were a result of high recruitment of suspension-feeding taxa, particularly barnacles and vermiform fauna that have poor reef-forming potential. External bioerosion by grazers was the dominant process influencing these dead coral substrates across both gulfs, contributing to higher rates of net erosion in the GoC and underscoring the important roles that urchins and fish play in not just removing algae on reefs, but also eroding reef habitat. Ultimately these findings reveal that the trophic requirements of habitat-altering taxa are closely tied to reef-framework stability, and that environmental conditions conducive to carbonate precipitation are not necessarily those that will lead to habitat persistence.

Ecological Monographs↗
USGS2019

Great Lakes Cladophora harbors phylogenetically diverse nitrogen-fixing microorganims

Abstract Nitrogen‐fixing microorganisms are among the epiphytic communities in Cladophora, potentially benefitting the algae in nutrient‐deficient waters, but their abundance and diversity remain unexplored. In this study, we determined the abundance and taxonomic composition of these nitrogen‐fixing microorganisms in Cladophora growing on rocks, breakwall structures, or submerged dreissenid mussel beds around southern Lake Michigan (N = 33) during the summer 2015, using two complementary genomic techniques: quantitative PCR (qPCR) and shotgun metagenomic sequencing. Genomic DNA was extracted from processed algal pellets, and the nitrogen‐fixing microbes were quantified by qPCR by targeting the nifH gene. Mean nifH concentrations (log10 copy numbers/gram algae fresh weight ± SE) were 5.54 ± 0.09, ranging from 4.31 to 6.57. Mean nifH concentrations in water samples (log10 copy numbers/milliliter of water ± SE) were: 3.25 ± 0.06, ranging from 2.41 to 3.90. Shotgun sequencing of a subset of algal samples representing the four sampling locations (N = 10) revealed as many as 267 nifH reads from among the sequences of the 10 shotgun metagenomes (averaging 27 reads per metagenome), ranging from 5 to 91 reads from Jeorse Park (September) and North Beach (September) locations. Taxonomic assignment of nifH sequences identified members from bacteria and archaea domains showing a clear separation of reads at domain and lower taxonomic levels. Bacteria were relatively more abundant than archaea. Anabaena, Bradyrhizobium, Geobacter, Methylocystis, Oscillatoria sp., and Skermanella (all bacteria), and Methanoregula, Methanothrix, and Methanosarcina (archaea) were among the nitrogen‐fixing genera identified by the MEGAN Community Edition program. Collectively, these findings show that phylogenetically diverse nitrogen‐fixing microbial communities are part of the Cladophora microbiome, likely contributing to the algal nitrogen needs.

Environmental DNA↗
USGS2011

Degradation of the disease-associated prion protein by a serine protease from lichens

The disease-associated prion protein (PrP(TSE)), the probable etiological agent of the transmissible spongiform encephalopathies (TSEs), is resistant to degradation and can persist in the environment. Lichens, mutualistic symbioses containing fungi, algae, bacteria and occasionally cyanobacteria, are ubiquitous in the environment and have evolved unique biological activities allowing their survival in challenging ecological niches. We investigated PrP(TSE) inactivation by lichens and found acetone extracts of three lichen species (Parmelia sulcata, Cladonia rangiferina and Lobaria pulmonaria) have the ability to degrade prion protein (PrP) from TSE-infected hamsters, mice and deer. Immunoblots measuring PrP levels and protein misfolding cyclic amplification indicated at least two logs of reductions in PrP(TSE). Degradative activity was not found in closely related lichen species or in algae or a cyanobacterium that inhabit lichens. Degradation was blocked by Pefabloc SC, a serine protease inhibitor, but not inhibitors of other proteases or enzymes. Additionally, we found that PrP levels in PrP(TSE)-enriched preps or infected brain homogenates are also reduced following exposure to freshly-collected P. sulcata or an aqueous extract of the lichen. Our findings indicate that these lichen extracts efficiently degrade PrP(TSE) and suggest that some lichens could have potential to inactivate TSE infectivity on the landscape or be a source for agents to degrade prions. Further work to clone and characterize the protease, assess its effect on TSE infectivity and determine which organism or organisms present in lichens produce or influence the protease activity is warranted.

PLoS ONE↗
USGS1999

Temporal variations in dissolved selenium in Lake Kinneret (Israel)

Selenium is an essential micronutrient for the growth of the dinoflagellate Peridinium gatunense that dominates the spring algal bloom in Lake Kinneret (LK). The relationship between the levels of dissolved selenium species and the occurance of algal blooms in this lake was studied. During algal blooms of P. gatunense in spring and of the blue-green Aphanizomenon ovalisporum in fall (in 1994) the concentration of epilimnetic dissolved organic Se (Se(org)) increased whereas that of selenite (SeIV) decreased, to levels below the limit of detection: 5 ng/l. The disappearance of SeIV during these blooms is attributed to algal uptake and it is suggested that the growth of both algae may have depended on Se(org) regeneration. A budget performed for selenate (SeVI) suggests that this species is also consumed by algae but to a lesser extent than SeIV (in 1994 ~40% of the epilimnetic load). During the stratification period the hypolimnion of Lake Kinneret becomes anoxic, with high levels of dissolved sulfide. The affects of this environment on the distribution of Se oxy-anions, selenite (SeIV) and selenate(SeVI), were also studied. At the onset of thermal stratification (March) about 35% of the lake inventory of both Se oxidized species are entrapped in the hypolimnion. During stages of oxygen depletion and H2S accumulation, SeIV is completely and SeVI partially removed from this layer. The removal is attributed to reduction followed by formation of particulate reduced products, such as elemental selenium Se(o). The ratio between SeVI to total dissolved selenium (SE(T)) in water sources to the lake is ~0.84, about twice the corresponding ratio in the lake (~0.44, during holomixis). In the lake about 75% of annual SeVI inflow from external sources undergoes reduction to selenide (Se-II) and Se(o) through epilimnetic algal assimilation and hypolimnetic anoxic reduction, respectively. It is suggested that the latter oxidation of the dissolved organic selenide released from biogenic particles and of Se(o) only to the tetravalent species is the cause for the lower ratio of SeVI/Se(T) in the lake.

Aquatic Sciences↗