Search USGSSearch

USGS · 70273207

Predicting sediment bulk density for San Francisco Estuary

Abstract

Sediment bulk density (ρ-dry) and particle size are two important parameters for predicting sediment bed erosion. ρ-dry, however, is difficult to measure accurately. The units of ρdry have not been consistently reported in the literature, leading to confusion, particularly in the calculation of sediment budgets that typically require integrating mass-based and volumetric components. Relationships between ρdry and sediment composition have been developed for multiple regions and differ between systems. Developing a system-specific predictive model for ρdry can help fill data gaps and improve sediment budgets, model accuracy, and estimates of quantities of sediment needed for restoration. In this study, we investigate whether ρdry in San Francisco Estuary can be predicted from organic carbon content or percent of fines, which are more easily or frequently measured than ρdry. We compiled sediment properties from samples collected over the past decade throughout the intertidal and subtidal regions of San Francisco Bay and the Sacramento–San Joaquin Delta to examine this relationship. Sample composition ranged from 2.18 to 99.97% fines (particles < 0.0625 mm), ρ-dry ranged from 0.22 to 1.60 g cm-3, and organic carbon ranged from 0.06 to 7.98%. Regression analysis indicates that the percent of fines explains 93% of the variation of ρ-dry ( p -value < 0.05, N = 81). The coefficient of determination decreased by ~1% when organic carbon was incorporated in the regression analysis. Comparison of this predictive ρ-dry model to four published models based on samples from other regions supports previous findings that the relationship between ρdry and grain size may vary by system. We also examined additional factors that may affect sediment erodibility, such as hydrographic and oceanographic conditions. Classification of sample sites as intertidal vs. subtidal or wavy vs. non-wavy each significantly explained the residuals from the ρdry model, and both intertidal and wavy conditions were associated with higher ρ-dry values.

Explore related subjects

90° N90° S · 180° W ← longitude → 180° E
Source-reported bounding extent: 37.4° to 38.4° latitude; -122.8° to -121.5° longitude. This indicates report coverage, not an exact sampling location. View area on OpenStreetMap.

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Samantha C. McGill, Jessica R. Lacy. 2025-12-08. Predicting sediment bulk density for San Francisco Estuary. https://doi.org/10.15447/sfews.2025v23iss4art6

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

Assessment of Chinook Salmon smolt survival at offsite release locations in the Sacramento River across wet and dry years

We used acoustic telemetry to estimate survival of tagged release groups, and quantify differences between alternative hatchery release strategies. To assess whether offsite release could increase survival of hatchery fish relative to those released at the hatchery, we compare survival during emigration of hatchery fall Chinook Salmon (FCS, Oncorhynchus tshawytscha ) smolts released onsite, at Coleman National Fish Hatchery (NFH), to those released at alternative offsite locations downstream in the upper Sacramento River, California. Approximately 300 fish in each release group were implanted with acoustic tags in the 3-year study during 2019, 2021, and 2022. Environmental conditions in the emigration corridor varied between study years, with extended high flows in 2019, whereas drought conditions and a flat hydrograph occurred in 2021 and 2022. Survival across years appeared to reflect environmental conditions, with higher overall survival seen in 2019. Survival differences between release sites generally showed higher cumulative survival to Knights Landing or Chipps Island for the downstream release groups, compared to the onsite releases during 2021 and 2022. This information suggests hatchery releases of FCS from Coleman NFH at downstream release sites may benefit emigration survival during years of drought and sub-optimal in-river conditions, compared to standard onsite releases. Hatchery managers can use information from this study to diversify the portfolio of release strategies, which may be useful to buffer against extreme variations of adult abundance by spreading risks across space and time. Ultimately, offsite releases may be a useful tool for adaptive management of these culturally, ecologically, and economically important salmon populations.

California

Differences among runs of Chinook Salmon in routing probability at the Georgiana Slough-Sacramento River junction

The survival of juvenile Chinook Salmon ( Oncorhynchus tshawytscha ) depends on the specific migration route they take through the Sacramento–San Joaquin Delta. Factors such as flow magnitude, flow direction, and distribution of fish across the channel significantly affect the likelihood of their entering routes with lower survival probabilities. Management strategies to mitigate the entry of endangered winter-run and threatened spring-run Chinook Salmon into the interior Delta—particularly through Georgiana Slough—involve flow regulation and the installation of a bioacoustic fish fence. Monitoring the effectiveness of these measures has primarily relied on acoustically-tagged, juvenile, hatchery-reared, late-fall-run Chinook Salmon, which are easier to obtain and can accommodate larger tags compared to other runs. Previous studies explored how flow dynamics affect routing probabilities of late-fall-run Chinook Salmon, but there is a lack of understanding about how routing probabilities vary among runs. We leveraged data from 15 previous studies comprising 3,004 acoustically-tagged fish across all four runs, over a 12-year period, to assess the effects of run on routing probability into Georgiana Slough, while accounting for variation in flow dynamics. We employed logistic regression to model the influence of tidal flow metrics, time of day (day and night), and run type on the probability of juvenile Chinook Salmon being routed into Georgiana Slough. Our analysis revealed that reverse flow during incoming tides influenced the routing probabilities of all runs. An increased proportion of flow into Georgiana Slough, meant an increased probability for all runs to be routed into Georgiana Slough. Late-fall-run Chinook Salmon also showed a greater probability of routing into Georgiana Slough during the night than during the day, whereas the opposite was true for other runs. These differences in routing probability affect our understanding of how management actions intended to reduce routing into Georgiana Slough may differentially affect the four runs of Chinook Salmon in the Sacramento River.

Callifornia

Effects of flow on pesticides in water and zooplankton in the northern Sacramento-San Joaquin Delta

Zooplankton are a key food source for juvenile fishes in estuaries worldwide, including California’s Sacramento–San Joaquin Delta (hereafter Delta); both zooplankton quality and quantity are critical to ecosystem health. Zooplankton may be affected by pesticides in water and the food web, and the Delta is known to contain complex pesticide mixtures. In this study, we evaluated pesticide concentrations in water and zooplankton in the northern Delta during (1) the summer–fall of 2017, 2018, and 2019, which included periods of augmented pulse flows from agriculture tailwater, and (2) across a full seasonal cycle from May 2019 to March 2020. We quantified changes in pesticide concentration in response to environmental factors. We found that zooplankton showed more frequent detections of hydrophobic pesticides compared to more frequent detections of hydrophilic compounds in water. Pesticide concentrations were influenced by flow, pesticide application, and season, but the effects of these environmental factors differed by habitat (Sacramento River or Yolo Bypass Toe Drain). Pesticides in water responded similarly to environmental factors in the Sacramento River and Yolo Bypass, whereas pesticides in zooplankton responded differently. In water, we found more detections and higher concentrations at higher flows in the Yolo Bypass and Sacramento River, but responses to pesticide application varied by habitat. Alternatively, pesticide concentrations in zooplankton increased in the Yolo Bypass with increasing flow (correlated with flow pulses) and changed seasonally; whereas, pesticide concentrations in zooplankton in the Sacramento River decreased at higher flows, and decreased with or did not respond to higher pesticide application in the watershed. Our study suggests that augmented flows—particularly those using agricultural tailwater—may have unintended negative ecological effects that could partially offset benefits to the food web and fishes in the northern Delta, underscoring the complex interplay among factors that drive increased pesticide exposure.

California