Search USGS⌕ Search
Home/Archive/USGS

USGS · 70028326

Nitrogen sources and cycling in the San Francisco Bay estuary: A nitrate dual isotopic composition approach

Scott D. Wankel·C. Kendall·C.A. Francis·A. Paytan
View original source ↗Export metadata ↓

Abstract

We used the dual isotopic composition of nitrate (δ 15 N and δ 18 O) within the estuarine system of San Francisco (SF) Bay, California, to explore the utility of this approach for tracing sources and cycling of nitrate (NO 2 − ). Surface water samples from 49 sites within the estuary were sampled during July–August 2004. Spatial variability in the isotopic composition suggests that there are multiple sources of nitrate to the bay ecosystem including seawater, several rivers and creeks, and sewage effluent. The spatial distribution of nitrate from these sources is heavily modulated by the hydrodynamics of the estuary. Mixing along the estuarine salinity gradient is the main control on the spatial variations in isotopic composition of nitrate within the northern arm of SF Bay. However, the nitrate isotopic composition in the southern arm of SF Bay exhibited a combination of source mixing and phytoplankton drawdown due mostly to the long residence time during the summer study period. Very low δ 18 O NO3 values (as low as −5.0%) at the Sacramento–San Joaquin River delta region give rise to a wide range of δ 18 ONO3 values in the SF Bay system. The range in δ 18 O NO3 values is more than twice that of δ 15 N NO3 , suggesting that δ 18 O NO3 is an even more sensitive tool for tracing nitrate sources and cycling than δ 15 N NO3 .

Explore related subjects

Limnology and OceanographyArticle

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Scott D. Wankel, C. Kendall, C.A. Francis, A. Paytan. 2006-07-15. Nitrogen sources and cycling in the San Francisco Bay estuary: A nitrate dual isotopic composition approach. https://doi.org/10.4319/lo.2006.51.4.1654

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

USGS2026

Increasing artificial light at night enhances salmonid predator foraging efficiency in an urbanized lake

Artificial light at night (ALAN) poses a threat to ecosystems globally. It includes both direct and indirect light, or skyglow, which occurs when ALAN scatters in the atmosphere, extending beyond its original source. We analyzed ALAN trends in Lake Washington, WA, from 2014 to 2023 using Visible Infrared Imaging Radiometer Suite (VIIRS) nighttime light measurements, evaluated the relationship between in situ and satellite measurements, and modeled predator search volumes for a juvenile salmon predator, cutthroat trout ( Oncorhynchus clarki ), as a function of ambient light and turbidity conditions. Open water regions experienced significant increases in ALAN, while nearshore areas primarily showed no or negative trends, revealing the role of skyglow in shaping open water light environments. Using a visual foraging model for cutthroat trout, we found that juvenile salmon at the shallow southern pelagic site experienced light 28 times brighter, resulting in a 168% greater predation vulnerability than those at the northern site. In the Ship Canal, a narrow corridor for outmigrating salmon, predator search volumes were 249% higher than at the southern site. These contrasts in predation vulnerability demonstrate how local conditions influence predator–prey dynamics and provide critical insight for targeting mitigation of both nearshore and distant light sources.

Washington↗
USGS2025

Unique thermal mixing patterns in Lake Ontario revealed by novel year-round observations of thermal stratification

Year-round records of thermal stratification in the Great Lakes are rare, and there are few observations of thermal stratification during winter. In this paper, we analyze temperature data from 13 temperature logger chains and from over 130 benthic acoustic receivers that were deployed across Lake Ontario for 2 yr. The timing and duration of the fall overturn correlate with the local average water depth, and shallow sites (< 50 m depth) overturn up to a month before deep sites (> 100 m depths). Likewise, in spring, the shallow sites warm faster. Lake Ontario has partial ice cover, so wind-driven mixing stirs the water column throughout winter, and inverse thermal stratification is largely absent. The depth-averaged winter water temperatures vary between 0°C and 4°C, with the coldest temperatures (near 0.1°C) found in the shallow Kingston basin and warmest temperatures (near 4°C) at sites near the 244 m deep Rochester Basin. Lake Ontario appears to be a warm monomictic lake, rather than having a dimictic mixing pattern as previously described—there is no sustained ice cover or inverse stratification that inhibits vertical mixing in winter. Winter is a poorly understood season for many aquatic processes, including fish bioenergetics, fish distribution, biochemical processes, invertebrate distribution, and production. Moreover, the lack of knowledge of winter has hampered the use of correct initial conditions for running large lake hydrodynamic models.

Lake Ontario↗
USGS2025

Discharge and nutrients interact to determine trophic structure in a wetland: Evidence from a landscape-scale manipulation

Identifying drivers of consumer biomass patterns and community structure is complex for managed freshwater ecosystems that are sensitive to nutrients and drought. In the Florida Everglades, flow restoration is expected to reintroduce discharge across an expansive wetland, yet most research on consumers has focused on water depth and dry disturbances. Low-velocity flow can mediate nutrient availability for basal food resources, but its scaled-up effects on consumer communities remain largely untested. We quantified consumer responses to a landscape-scale flow manipulation that created discharge variability along a 2.5-km path of interconnected shallow sloughs. Over 4 yr, we repeatedly sampled macroinvertebrates, small fishes, and large predatory fishes (standard length > 8 cm) in 26 sloughs—some along a flow path experiencing pulsed water releases and others in two non-flowing reference areas. We tested the effects of antecedent discharge on consumer biomass while accounting for local nutrient concentrations (total phosphorus). Discharge increased biomass across all consumer groups, particularly in oligotrophic sloughs. Conversely, eutrophic sloughs demonstrated stronger top-down effects on small fishes and macroinvertebrates, with discharge primarily benefiting large predatory fishes. Nutrient gradients preferentially increased large fishes and caused macroinvertebrate community shifts favoring herbivorous and possibly predation-resistant taxa. Structural equation modeling similarly indicated bottom-up support from discharge but stronger top-down control in nutrient-rich sloughs. These findings demonstrate that discharge and total phosphorus interactively produce distinct consumer biomass patterns. Flow restoration in oligotrophic Everglades sloughs is hypothesized to enhance aquatic consumer biomass across trophic levels, revealing an ecological benefit to slow-flowing ecosystems not previously recognized.

Florida↗