Search USGS⌕ Search

Geology topics

Research about Sonora

Source-linked reports with geographic coverage including Sonora.

At least 19 recordsLinked to original sources
USGS2026

Satellite time series analysis to quantify changing climax ciénegas using a state and transition model approach

Ciénegas are rare wetlands in arid landscapes of the North American Southwest, historically providing critical ecological and hydrological functions but increasingly threatened by changing climate and land use pressures. This study quantifies changes in ciénega condition and floodplain dynamics using a state-and-transition model (STM) informed by expert knowledge and remote sensing. Key factors include woody plant encroachment, water availability, and soil aggradation. We mapped 31 ciénegas with high-resolution imagery and analyzed Landsat data (1985–2023) to assess vegetation health and moisture using the Normalized Difference Vegetation Index (NDVI) and Normalized Difference Infrared Index (NDII). Results show substantial interannual variability in phenology, water stress, and soil moisture, with regional drying and elevation strongly influencing ciénega resilience. We classified ciénegas into three functional states—healthy, desiccated, and dormant—and mapped their 2023 condition. Trend analyses indicate most ciénegas exhibit greening despite drought, though localized variability underscores the need for site-specific management. None are in a stable climax (reference) state; rather, they transition among states in response to external drivers. Increasing woody plant cover and surface drying, likely linked to declining regional water tables, favor deep-rooted species over wetland grasses—a pattern mirrored in adjacent control plots. Spatially explicit analysis revealed intra-ciénega variability often masked by aggregated data, highlighting the importance of high-resolution monitoring. Seasonal and long-term trends provide context for understanding ciénega dynamics, including degradation and restoration pathways. This study emphasizes the importance of groundwater conservation and demonstrates how remote sensing supports long-term monitoring. The STM framework offers a practical tool for adaptive management to sustain freshwater resources in arid environments.

Arizona, New Mexico↗
USGS2023

DNA virome composition of two sympatric wild felids, bobcat (Lynx rufus) and puma (Puma concolor) in Sonora, Mexico

With viruses often having devastating effects on wildlife population fitness and wild mammals serving as pathogen reservoirs for potentially zoonotic diseases, determining the viral diversity present in wild mammals is both a conservation and One Health priority. Additionally, transmission from more abundant hosts could increase the extinction risk of threatened sympatric species. We leveraged an existing circular DNA enriched metagenomic dataset generated from bobcat ( Lynx rufus , n = 9) and puma ( Puma concolor , n = 13) scat samples non-invasively collected from Sonora, Mexico, to characterize fecal DNA viromes of each species and determine the extent that viruses are shared between them. Using the metaWRAP pipeline to co-assemble viral genomes for comparative metagenomic analysis, we observed diverse circular DNA viruses in both species, including circoviruses, genomoviruses, and anelloviruses. We found that differences in DNA virome composition were partly attributed to host species, although there was overlap between viruses in bobcats and pumas. Pumas exhibited greater levels of alpha diversity, possibly due to bioaccumulation of pathogens in apex predators. Shared viral taxa may reflect dietary overlap, shared environmental resources, or transmission through host interactions, although we cannot rule out species-specific host-virus coevolution for the taxa detected through co-assembly. However, our detection of integrated feline foamy virus (FFV) suggests Sonoran pumas may interact with domestic cats. Our results contribute to the growing baseline knowledge of wild felid viral diversity. Future research including samples from additional sources (e.g., prey items, tissues) may help to clarify host associations and determine the pathogenicity of detected viruses.

Sonora↗
USGS2021

PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA

The original PumaPlex is a high-throughput assay developed to genotype 25 single nucleotide polymorphisms (SNPs) in pumas ( Puma concolor ). Here, we describe the development of PumaPlex100 – an expanded version of the original assay that now genotypes > 100 SNPs. We tested 142 candidate SNPs and developed a panel of 101 polymorphic loci, which are spread across four multiplexes and suitable for genotyping of non-invasive samples. This panel will provide researchers a set of standardized markers, that can be analyzed with minimal bioinformatic skills, for the assessment of population structure and genetic diversity. These SNPs will serve as an important resource for the continued genetic monitoring of this species, especially monitoring through non-invasive sampling.

Sonora↗
USGS2021

Editorial: Combining the science and practice of restoration ecology-Case studies of a grassroots binational restoration collaborative in the Madrean Archipelago Ecoregion (2014- 2019)

The Sky Island Restoration Collaborative (SIRC) is a growing partnership between government agencies, nonprofit organizations, and private landowners in southeast Arizona, the United States, and northern Sonora, Mexico. Starting in 2014 as an experiment to cultivate restoration efforts by connecting people across vocations and nations, SIRC has evolved over 5 years into a flourishing landscape-restoration initiative. The group is founded on the concept of developing a restoration economy, where ecological and socioeconomic benefits are interconnected and complimentary. The variety of ideas, people, field sites, administration, and organizations promote learning and increase project success through iterative adaptive management, transparency, and sharing. The collaborative seeks to make restoration self-sustaining and improve quality of life for citizens living along the US-Mexico border. Research and experiments are developed between scientists and practitioners to test hypotheses, qualify procedures, and quantify impacts on shared projects. Simultaneously, partners encourage and facilitate connecting more people to the landscape—via volunteerism, internships, training, and mentoring. Through this history, SIRC’s evolution is pioneering the integration of community and ecological restoration to protect biodiversity in the Madrean Archipelago Ecoregion. This editorial introduces SIRC as a unique opportunity for scientists and practitioners looking to engage in binational partnerships and segues into this special journal issue we have assembled that relates new findings in the field of restoration ecology.

Arizona, New Mexico↗
USGS2021

Distribution of tiger salamanders in northern Sonora, Mexico: Comparison of sampling methods and possible implications for an endangered subspecies

Many aquatic species in the arid USA-Mexico borderlands region are imperiled, but limited information on distributions and threats often hinders management. To provide information on the distribution of the Western Tiger Salamander ( Ambystoma mavortium ), including the USA-federally endangered Sonoran Tiger Salamander ( Ambystoma mavortium stebbinsi ), we used traditional (seines, dip-nets) and modern (environmental DNA [eDNA]) methods to sample 91 waterbodies in northern Sonora, Mexico, during 2015-2018. The endemic Sonoran Tiger Salamander is threatened by introgressive hybridization and potential replacement by another sub-species of the Western Tiger Salamander, the non-native Barred Tiger Salamander ( A. m. mavortium ). Based on occupancy models that accounted for imperfect detection, eDNA sampling provided a similar detection probability (0.82 [95% CI: 0.56-0.94]) as seining (0.83 [0.46-0.96]) and much higher detection than dip-netting (0.09 [0.02-0.23]). Volume of water filtered had little effect on detection, possibly because turbid sites had greater densities of salamanders. Salamanders were estimated to occur at 51 sites in 3 river drainages in Sonora. These results indicate tiger salamanders are much more widespread in northern Sonora than previously documented, perhaps aided by changes in land and water management practices. However, because the two subspecies of salamanders cannot be reliably distinguished based on morphology or eDNA methods that are based on mitochondrial DNA, we are uncertain if we detected only native genotypes or if we documented recent invasion of the area by the non-native sub-species. Thus, there is an urgent need for methods to reliably distinguish the subspecies so managers can identify appropriate interventions.

Sonora↗
USGS2021

Augmentation of natural prey reduces cattle predation by puma (Puma concolor) and jaguar (Panthera onca) on a ranch in Sonora, Mexico

Retaliatory killing of large carnivores due to livestock predation is one of the major threats for the conservation of many declining populations of predators. According to empirical observations, there is a higher incidence of livestock predation when native prey abundance is low. In this study, we applied a treatment consisting of augmentation of prey abundance by translocation of peccaries ( Pecari tajacu ) and placement of four feed stations for white-tailed deer ( Odocoileus virginianus ) on a cattle ranch in Sonora, Mexico, with verified calf predation by puma ( Puma concolor ) and jaguar ( Panthera onca ). We quantified and compared consumed prey over two periods—phase I (8 months before the augmentation of prey) and phase II (8 months after the augmentation of prey)—through investigation of kill sites from Global Positioning System–collared jaguar and puma, prey identification from analyzed scat using molecular DNA techniques, and opportunistic discoveries of recently killed animal remains by either predator. We calculated the relative abundance of species (17 mammals [one species with two distinct age classes] and 1 bird species) through camera traps and for the most relevant prey species for this study (deer, calf, and peccary), we also estimated prey use by the predator, based on their availability during each period (prey preference). In the prey composition analyses of scat, we observed a significant reduction in the consumption of bovids and a significant increase in the consumption of peccaries during phase II. In the analyses of prey use, during phase I, predators consumed peccaries and calves at a higher proportion in relation to their availability. During phase II, consumption of calves declined from being preferred, to being consumed at the same proportion as their availability. Application of these results can contribute to the decrease of livestock predation and therefore conservation of pumas and jaguars.

Sonora↗
USGS2021

Oases: Finding hidden biodiversity gems in the southern Sonoran Desert

In the arid southern Sonoran Desert, the rugged canyons of the Sierra El Aguaje contain numerous freshwater oases. These habitats are supported by small springs which are usually located along geologic faults in volcanic and granitic bedrock. Genetic evidence from freshwater-obligate species (e.g., fish and frogs) suggests these or similar spring-fed habitats have persisted for thousands to millions of years. Though biologists are just beginning to study these habitats, at least 210 species of aquatic invertebrates have been documented, along with several species of fishes, amphibians, and semi-aquatic reptiles. Additionally, euryhaline fishes occasionally colonize freshwater habitats when hurricane-induced floods connect oases with the sea. At least six new, potentially endemic, species of aquatic invertebrates have been found in recent years, but much work remains to be done to fully document the biota of these oases. Groundwater pumping, introductions of nonnative species, and unmanaged human recreation all threaten the biodiversity of these desert oases. We hope this chapter will draw attention to these beautiful habitats and promote conservation of their unique biota

Sonora↗
USGS2019

Mesozoic to Cenozoic sedimentation, tectonics, and metallogeny of Sonora, Mexico

We will embark on a five-day journey through northern, western, and central Sonora, in which we will see excellent examples of mostly Mesozoic to Cenozoic tectonics, sedimentation, and metallogeny. On Day 1, we will visit the porphyry copper deposit at Ajo, Arizona, and several Pleistocene cinder cones and maar craters in the Pinacate Biosphere Reserve. On Day 2, we will see L- and L-S tectonites at the type locality of the Mojave-Sonora megashear in Sierra Los Tanques, Noche Buena orogenic gold deposit, Ediacaran Gamuza beds in Caborca, and have an overview of the Carnero detachment fault on the south side of Sierra La Gloria. Day 3 will explore faults and related sedimentary and volcanic rocks associated with the late Miocene oblique opening of the Gulf of California rift and visit outcrops that record late Miocene timing constraints for flooding of the Gulf of California seaway, including several localities on southern Isla Tiburón accessible only by boat. Day 4 will visit exposures of Permian sedimentary to Paleogene igneous rocks in Hermosillo (Cerro La Campana); Puerto del Sol detachment fault zone; Aconchi batholith and a hot spring localized on a Basin and Range normal fault; Santa Elena low-sulfidation epithermal gold mine; and the Upper Jurassic Cucurpe Formation. On Day 5, we will visit several exposures of different crustal levels of the Magdalena-Madera metamorphic core complex, including the spectacular stretched pebble conglomerates in Arroyo Amolares.

Sonora↗
USGS2019

Status of the threatened Chiricahua Leopard Frog and conservation challenges in Sonora, Mexico, with notes on other ranid frogs and non-native predators

In North America, ranid frogs (Ranidae) have experienced larger declines than any other amphibian family, particularly species native to the southwestern USA and adjacent Mexico; however, our knowledge of their conservation status and threats is limited in Mexico. We assessed the status of the federally listed as threatened (USA) Chiricahua Leopard Frog ( Lithobates chiricahuensis ) in Sonora, Mexico, based on a search of museum specimens, published records, unpublished accounts, and surveys from 2000–2016 of 84 sites within the geographical and elevational range of the species. We also provide information on occurrence of three other native ranid frog species encountered opportunistically during our surveys. The Chiricahua Leopard Frog is known in Sonora from only 20 historical (pre-2000) localities. Searches of three historical sites did not reveal any Chiricahua Leopard Frogs; however, we found it at three previously undocumented sites in 2016, all near Cananea. To our knowledge, these records are the first observations of Chiricahua Leopard Frogs in Sonora since 1998. Differences in conservation status between the USA and Sonora are likely due to differing magnitude and distribution of threats and a comparatively aggressive recovery program in the USA. For example, key non-native predators important in the decline of the Chiricahua Leopard Frog are much less widespread in Sonora compared to the southwestern USA, but there are fewer protections and recovery actions for the frog in Sonora than in the USA. Additional surveys for the Chiricahua Leopard Frog and other amphibians in Sonora should be a priority to fully assess threats and conservation status.

Sonora↗
USGS2016

Diet of pumas ( Puma concolor ) in Sonora, Mexico, as determined by GPS kill sites and molecular identified scat, with comments on jaguar ( Panthera onca ) diet

We documented puma ( Puma concolor ) and jaguar ( Panthera onca ) prey consumption in northeastern Sonora, Mexico, by investigating global positioning system cluster sites ( n = 220), and conducting molecular analyses of scat ( n = 116) collected between 2011 and 2013. We used camera trap data ( n = 8,976 camera days) to estimate relative abundances of pumas and jaguars. Deer ( Odocoileus virginianus ) was the most frequent prey for puma found at kill sites (67%) and identified from scat (74%), although based on relative numbers of prey consumed, deer represented 45% and lagomorphs 20% of the proportion of all individuals eaten. A variety of small prey (weighing <15 kg) comprised the majority (52%) of the jaguar kill sites. From prey found at kill sites, jaguars killed calves ( Bos taurus ) at a lower frequency than previously reported, whereas pumas preyed on calves at a higher frequency than previously reported in the same area. In our study area, jaguars preyed on calves at approximately the same rate as pumas (jaguars 3.7 calves per year, pumas 4.9 calves per year). Calculated predation rates were limited only to collared animals within our study area and therefore should not be considered applicable to all pumas and jaguars in Sonora.

Sonora↗
USGS2016

Distribution of the Sonora Tiger Salamander (Ambystoma mavortium stebbinsi) in Mexico

The Sonoran Tiger Salamander (Ambystoma mavortium stebbinsi Lowe, 1954) was listed as federally endangered in the USA in 1997 (USFWS 1997). In the USA, the distribution of A. mavortium stebbinsi is limited to the San Rafael Valley (approximately 567 km2), between the Sierra San Antonio (called the Patagonia Mountains in Arizona) and Huachuca Mountains, and south of the Canelo Hills, Arizona (Fig. 1). The USA listing was triggered by loss of natural wetland habitats, threats from invasive predators, frequent die-offs from disease, introgression with the introduced Barred Tiger Salamander (A. mavortium mavortium), and small range and number of breeding sites that increases susceptibility to stochastic events (USFWS 1997). Small population sizes and limited gene flow have caused inbreeding, which may further reduce population viability and the potential for recovery (Jones et al. 1988; Storfer et al. 2014).

Sonora↗
USGS2014

Late Paleozoic fusulinids from Sonora, Mexcio: importance for interpretation of depositional settings, biogeography, and paleotectonics

Three sets of fusulinid faunas in Sonora, Mexico, discussed herein, record different depositional and paleotectonic settings along the southwestern margin of Laurentia (North America) during Pennsylvanian and Permian time. The settings include: offshelf continental rise and ocean basin (Rancho Nuevo Formation in the Sonora allochthon), shallow continental shelf (La Cueva Limestone), and foredeep basin on the continental shelf (Mina México Formation). Our data represent 41 fusulinid collections from 23 localities with each locality providing one to eight collections. Reworked fusulinids in the Middle and Upper Pennsylvanian part of the Rancho Nuevo Formation range in age from Desmoinesian into Virgilian (Moscovian-Gzhelian). Indigenous Permian fusulinids in the La Cueva Limestone range in age from middle or late Wolfcampian to middle Leonardian (late Sakmarian-late Artinskian), and reworked Permian fusulinids in the Mina México Formation range in age from early to middle Leonardian (middle-late Artinskian). Conodonts of Guadalupian age occur in some turbidites in the Mina México Formation, indicating the youngest foredeep deposit is at least Middle Permian in age. Our fusulinid collections indicate a hiatus of at least 10 m.y. between the youngest Pennsylvanian (Virgilian) rocks in the Sonora allochthon and the oldest Permian (middle Wolfcampian) rocks in the region. Most fusulinid faunas in Sonora show affinities to those of West Texas, New Mexico, and Arizona; however, some genera and species are similar to those in southeastern California. As most species are similar to those east of the southwest-trending Transcontinental arch in New Mexico and Arizona, this arch may have formed a barrier preventing large-scale migration and mixing of faunas between the southern shelf of Laurentia in northwestern Mexico and the western shelf in the southwestern United States. The Sonora allochthon, consisting of pre-Permian (Lower Ordovician to Upper Pennsylvanian) deep-water continental-rise and ocean-basin rocks, was thrust northward 50–200 km over Permian and older shallow-water carbonate-shelf rocks and Permian deep-water foredeep rocks of southern Laurentia. As Triassic rocks unconformably overlie the Sonora allochthon, we conclude that terminal movement of the allochthon was in Late Permian time.

Sonora↗
USGS2013

Regional demographic trends from long-term studies of saguaro ( Carnegiea gigantea ) across the northern Sonoran Desert

Ten saguaro ( Carnegiea gigantea ) populations in the northern Sonoran Desert were monitored from 1959 to 2005 to discriminate how climate influences plant growth, abundance, reproductive potential, survivorship, age structure and regeneration trends. Thousands of saguaros were measured to determine site-specific growth rates and survivorship through time. Observed growth rates were used to predict the ages of saguaros and reconstruct local and regional regeneration patterns back to the late 18th century. Both growth rates and degree of branching generally tracked temperature and moisture gradients. Site-specific age-height models explained 89-97% of variance in observed ages, with a slope of nearly one. Regeneration was more consistent at sites in the western (hotter/drier) than eastern (cooler/wetter) sites, which exhibited clear multidecadal variability in regeneration rates. Averaged across the region, saguaro regeneration rates were highest from 1780 to 1860, coincident with wet conditions and high Pinus ponderosa recruitment in the highlands. Milder and wetter winters and protection from livestock grazing likely promoted late 20th century regeneration surges at some sites. Predictions of saguaro population dynamics in the 21st century likely will be confounded by the saguaro's episodic and asynchronous regeneration, continued urbanization, ongoing grass invasions and associated wildfires, and changing climate.

Arizona↗
USGS2012

Mapping socio-environmentally vulnerable populations access and exposure to ecosystem services at the U.S.-Mexico borderlands

Socio-environmental vulnerable populations are often unrepresented in land-use planning yet have great potential for loss when exposed to changes in ecosystem services. Administrative boundaries, cultural differences, and language barriers increase the disassociation between land-use management and marginalized populations living in the U.S.&ndash;Mexico borderlands. This paper describes the development of a Modified Socio-Environmental Vulnerability Index (M-SEVI), using determinants from binational census and neighborhood data that describe levels of education, access to resources, migratory status, housing, and number of dependents, to provide a simplified snapshot of the region's populace that can be used in binational planning efforts. We apply this index at the SCW, located on the border between Arizona, USA and Sonora, Mexico. For comparison, the Soil and Water Assessment Tool is concurrently applied to assess the provision of erosion- and flood control services over a 9-year period. We describe how this coupling of data can form the base for an ecosystem services assessment across political boundaries that can be used by land-use planners. Results reveal potential disparities in environmental risks and burdens throughout the binational watershed in residential districts surrounding and between urban centers. The M-SEVI can be used as an important first step in addressing environmental justice for binational decision-making.

Arizona↗
USGS2012

Evaluation of simulations to understand effects of groundwater development and artificial recharge on the surface water and riparian vegetation Sierra Vista subwatershed, Upper San Pedro Basin, Arizona

In 2007, the U.S. Geological Survey documented a five-layer groundwater flow model of the Sierra Vista and Sonoran subwatersheds of the Upper San Pedro Basin. The model has been applied by a private consultant to evaluate the effects of projected groundwater pumping through 2105 and effects of artificial recharge at three near-stream sites for 2012-2111. The main concern regarding simulations of long-term groundwater pumping is the effect of artificial model boundaries on modeled response, particularly for pumping near Cananea, Sonora, Mexico, which is adjacent to an artificial no-flow boundary. Concerns regarding the simulations of the effects of artificial recharge near streams include the resolution of the model and the representation of the model properties at the site scale; a possible limited ability of the model to correctly apportion recharge response between increased streamflow and increased evapotranspiration; a limited ability of the model to simulate detailed geometries of artificial recharge areas and evapotranspiration areas; and stream locations with the 820-foot grid spacing of the basin-scale model. In spite of these concerns, use of the U.S. Geological Survey five-layer groundwater flow model by the consultant are reasonable and valid.

Arizona↗
USGS2011

Ordovician graptolites from the northern Sierra de Cobachi, Sonora, Mexico

Two Ordovician graptolite assemblages are recognised and described for the first time in the allochthonous siliceous assemblage or succession forming the Guayacan Group of central Sonora in northwestern Mexico. A Middle Ordovician assemblage referable to the Nemagraptus gracilis-Climacograptus wilsoni zonal interval occurs in the upper siliceous shale of unit 1 of the Guayacan Group and an Upper Ordovician assemblage representative of the Dicellograptus ornatus Zone of the Pacific faunal province has been collected from shaly partings in the bedded radiolarian chert constituting unit 2. The stratigraphical make-up of the siliceous assemblage bears a striking similarity to the better known—and correlative—Lower Palaeozoic siliceous succession of central and northern Nevada, giving credence to the hypothesis that the Palaeozoic siliceous assemblage in northwestern Mexico was originally the extension of the Nevadan assemblage into California, which has been transposed to its present position along a left-lateral megashear of the magnitude of at least 1000 km. A review of the proximal development of the spinose species remaining in the form genus Climacograptus Hall has led to the proposal to restrict the genus to Climacograptus bicornis (Hall), its type species, and to two other septate species of early Middle Ordovician age (Llandeilo-early Caradoc) with a primitive type of proximal-end development. The genus Euclimacograptus , with Climacograptus hastatus T. S. Hall as the type species, is proposed for spinose Upper Ordovician climacograptids with an advanced proximal-end development. The genus Ensigraptus , with Climacograptus caudatus Lapworth as the type species, is also proposed for species homeomorphic with those included in Normalograptus Legrand but with a less advanced proximal-end development. Five species are described.

Sonora↗
USGS2007

Neoproterozoic diamictite-cap carbonate succession and δ 13 C chemostratigraphy from eastern Sonora, Mexico

Despite the occurrence of Neoproterozoic strata throughout the southwestern U.S. and Sonora, Mexico, glacial units overlain by enigmatic cap carbonates have not been well-documented south of Death Valley, California. Here, we describe in detail the first glaciogenic diamictite and cap carbonate succession from Mexico, found in the Cerro Las Bolas Group. The diamictite is exposed near Sahuaripa, Sonora, and is overlain by a 5 m thick very finely-laminated dolostone with soft sediment folds. Carbon isotopic chemostratigraphy of the finely-laminated dolostone reveals a negative &delta; 13 C anomaly (down to &minus; 3.2&permil; PDB) characteristic of cap carbonates worldwide. Carbon isotopic values rise to + 10&permil; across &sim; 400 m of section in overlying carbonates of the Mina el Mezquite and Monteso Formations. The pattern recorded here is mostly characteristic of post-Sturtian (ca. &le; 700 Ma), but pre-Marinoan (ca. &ge; 635 Ma) time. However, the Cerro Las Bolas Group shares ambiguity common to most Neoproterozoic successions: it lacks useful radiometric age constraints and biostratigraphically useful fossils, and its &delta; 13 C signature is oscillatory and therefore somewhat equivocal.

Sonora↗