Geology topics

Research about Sacramento-san Joaquin River Delta

Source-linked reports with geographic coverage including Sacramento-san Joaquin River Delta.

5 recordsLinked to original sources

USGS2014

Evaluation of sensor types and environmental controls on mapping biomass of coastal marsh emergent vegetation

There is a need to quantify large-scale plant productivity in coastal marshes to understand marsh resilience to sea level rise, to help define eligibility for carbon offset credits, and to monitor impacts from land use, eutrophication and contamination. Remote monitoring of aboveground biomass of emergent wetland vegetation will help address this need. Differences in sensor spatial resolution, bandwidth, temporal frequency and cost constrain the accuracy of biomass maps produced for management applications. In addition the use of vegetation indices to map biomass may not be effective in wetlands due to confounding effects of water inundation on spectral reflectance. To address these challenges, we used partial least squares regression to select optimal spectral features in situ and with satellite reflectance data to develop predictive models of aboveground biomass for common emergent freshwater marsh species, Typha spp. and Schoenoplectus acutus , at two restored marshes in the Sacramento–San Joaquin River Delta, California, USA. We used field spectrometer data to test model errors associated with hyperspectral narrowbands and multispectral broadbands, the influence of water inundation on prediction accuracy, and the ability to develop species specific models. We used Hyperion data, Digital Globe World View-2 (WV-2) data, and Landsat 7 data to scale up the best statistical models of biomass. Field spectrometer-based models of the full dataset showed that narrowband reflectance data predicted biomass somewhat, though not significantly better than broadband reflectance data [R 2 = 0.46 and percent normalized RMSE (%RMSE) = 16% for narrowband models]. However hyperspectral first derivative reflectance spectra best predicted biomass for plots where water levels were less than 15 cm (R 2 = 0.69, %RMSE = 12.6%). In species-specific models, error rates differed by species ( Typha spp.: %RMSE = 18.5%; S. acutus : %RMSE = 24.9%), likely due to the more vertical structure and deeper water habitat of S. acutus. The Landsat 7 dataset (7 images) predicted biomass slightly better than the WV-2 dataset (6 images) (R 2 = 0.56, %RMSE = 20.9%, compared to R 2 = 0.45, RMSE = 21.5%). The Hyperion dataset (one image) was least successful in predicting biomass (R 2 = 0.27, %RMSE = 33.5%). Shortwave infrared bands on 30 m-resolution Hyperion and Landsat 7 sensors aided biomass estimation; however managers need to weigh tradeoffs between cost, additional spectral information, and high spatial resolution that will identify variability in small, fragmented marshes common to the Sacramento–San Joaquin River Delta and elsewhere in the Western U.S.

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USGS2014

Distribution, abundance, and migration timing of Greater and Lesser Sandhill Cranes wintering in the Sacramento-San Joaquin River Delta region of California

The Sacramento-San Joaquin River Delta region of California (hereafter, Delta region) is an important wintering region for the Central Valley Population of greater sandhill cranes ( Grus canadensis tabida ) and lesser sandhill cranes ( G. c. canadensis ), but basic information about the ecology of these birds is lacking to design a biologically sound conservation strategy. During the winters of 2007-08 and 2008-09, we conducted roost counts, roadside surveys, aerial surveys, and tracked radio-marked birds to define the geographic area used by sandhill cranes in the Delta region, document migration chronology, and estimate subspecies-specific abundance. Radio-marked sandhill cranes arrived in our study area beginning 3 October, most arrived in mid-October, and the last radio-marked sandhill crane arrived on 10 December. Departure dates ranged from 15 January to 13 March. Mean arrival and departure dates were similar between subspecies. From mid-December through early-February in 2007-2008, the Delta population ranged from 20,000 to 27,000 sandhill cranes. Abundance varied at the main roost sites during winter because sandhill cranes responded to changes in water conditions. Sandhill cranes used an area of approximately 1,500 km 2 for foraging. Estimated peak abundance in the Delta region was more than half the total number counted on recent Pacific Flyway midwinter surveys, indicating the Delta region is a key area for efforts in conservation and recovery of wintering sandhill cranes in California. Based on arrival dates, flooding of sandhill crane roost sites should be staggered with some sites flooded in early September and most sites flooded by early October. Maintained flooding through mid-March would provide essential roosting habitat until most birds have departed the Delta region on spring migration.

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USGS2013

The Regional Salmon Outmigration Study--survival and migration routing of juvenile Chinook salmon in the Sacramento-San Joaquin River Delta during the winter of 2008-09

Juvenile Chinook salmon (Oncorhynchus tshawytscha) emigrating from natal tributaries of the Sacramento River may use a number of migration routes to navigate the Sacramento-San Joaquin River Delta (hereafter called “the Delta”), each of which may influence their probability of surviving. We applied a mark-recapture model to data from acoustically tagged juvenile late fall-run Chinook salmon that migrated through the Delta during the winter of 2008–09 to estimate route entrainment, survival, and migration times through the Delta. A tag-life study was conducted to determine the potential for premature tag failure. Tag failure began after 12 days and continued until the 45th day. Travel times of tagged fish exceeded minimum tag-failure times, indicating that survival estimates obtained from this study were negatively biased due to tag failure prior to fish exiting the Delta. Survival estimates were not adjusted and represent the joint probability of tag survival and fish survival. However, relative comparisons of survival among Chinook salmon choosing different routes appeared to be robust to tag failure, and migration-routing parameters were unaffected by tag failure. Migration-routing patterns were consistent among release groups. The Sacramento River was the primary migration route for all release groups except one. The percentage of fish entering the Sacramento River ranged from 33 to 55 percent. Sutter and Steamboat Sloughs were the secondary migration route for 9 of the 10 releases. The percentage of fish migrating through this route ranged from 10 to 35 percent. Entrainment into the interior Delta ranged from 15 to 33 percent. The Delta Cross Channel gates were open for 7 of the 10 releases. Entrainment into the interior Delta through the cross channel ranged from 1 to 27 percent. We estimated route-specific survival for 10 release groups that were released between November 14, 2008, and January 19, 2009. Population-level survival through the Delta (S Delta ) ranged from 0.019 (standard error of 0.012) to 0.277 (standard error of 0.041) among releases, which represent the probability of a fish surviving from Sacramento to Chipps Island with an operational transmitter. Sacramento River flows throughout the study period were approximately 8,000–15,000 cubic feet per second at Freeport, suggesting that variability in flow contributed little to differences in survival between releases. Fish migrating through the Sacramento River had the highest survival for most releases. Survival in Sutter and Steamboat Sloughs was slightly lower than survival in the Sacramento River for 7 of the 10 releases, but higher than survival in the Sacramento River for 3 releases. Survival in the interior Delta was lowest for all release groups except for one release in November. With the exception of this November release, survival patterns across release groups were similar to those of previous studies.

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USGS2012

Understanding pesticides in California's Delta

The Sacramento-San Joaquin River Delta (Delta) is the hub of California’s water system and also an important habitat for imperiled fish and wildlife. Aquatic organisms are exposed to mixtures of pesticides that flow through the maze of Delta water channels from sources including agricultural, landscape, and urban pest-control applications. While we do not know all of the effects pesticides have on the ecosystem, there is evidence that they cause some damage to organisms in the Delta. Decades of USGS research have provided a good understanding of when, where, and how pesticides enter the Delta. However, pesticide use is continually changing. New field studies and methods are needed so that scientists can analyze which pesticides are present in the Delta, and at what concentrations, enabling them to estimate exposure and ultimate effects on organisms. Continuing research will provide resource managers and stakeholders with crucial information to manage the Delta wisely.

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USGS2007

Landscape scale controls on the vascular plant component of dissolved organic carbon across a freshwater delta

Lignin phenol concentrations and compositions were determined on dissolved organic carbon (DOC) extracts (XAD resins) within the Sacramento-San Joaquin River Delta (the Delta), the tidal freshwater portion of the San Francisco Bay Estuary, located in central California, USA. Fourteen stations were sampled, including the following habitats and land-use types: wetland, riverine, channelized waterway, open water, and island drains. Stations were sampled approximately seasonally from December, 1999 through May, 2001. DOC concentrations ranged from 1.3 mg L -1 within the Sacramento River to 39.9 mg L -1 at the outfall from an island drain (median 3.0 mg L -1 ), while lignin concentrations ranged from 3.0 μL -1 within the Sacramento River to 111 μL -1 at the outfall from an island drain (median 11.6 μL -1 ). Both DOC and lignin concentrations varied significantly among habitat/land-use types and among sampling stations. Carbon-normalized lignin yields ranged from 0.07 mg (100 mg OC) -1 at an island drain to 0.84 mg (100 mg OC) -1 for a wetland (median 0.36 mg (100 mg OC) -1 ), and also varied significantly among habitat/land-use types. A simple mass balance model indicated that the Delta acted as a source of lignin during late autumn through spring (10-83% increase) and a sink for lignin during summer and autumn (13-39% decrease). Endmember mixing models using S:V and C:V signatures of landscape scale features indicated strong temporal variation in sources of DOC export from the Delta, with riverine source signatures responsible for 50% of DOC in summer and winter, wetland signatures responsible for 40% of DOC in summer, winter, and late autumn, and island drains responsible for 40% of exported DOC in late autumn. A significant negative correlation was observed between carbon-normalized lignin yields and DOC bioavailability in two of the 14 sampling stations. This study is, to our knowledge, the first to describe organic vascular plant DOC sources at the level of localized landscape features, and is also the first to indicate a significant negative correlation between lignin and DOC bioavailability within environmental samples. Based upon observed trends: (1) Delta features exhibit significant spatial variability in organic chemical composition, and (2) localized Delta features appear to exert strong controls on terrigenous DOC as it passes through the Delta and is exported into the Pacific Ocean.

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