Geology topics

Research about Pennsylvania

Source-linked reports with geographic coverage including Pennsylvania.

At least 91 records · Page 5Linked to original sources

USGS2020

Development of a suite of functional immune assays and initial assessment of their utility in wild smallmouth bass health assessments

Methods were developed for measuring immune function in Micropterus dolomieu (smallmouth bass). The ultimate objective is to monitor and evaluate changes over time in immune status and disease resistance in conjunction with other characteristics of fish health and environmental stressors. To test these methods for utility in ecotoxicological studies, 192 smallmouth bass, age 2 years and older, were collected from three sites within the Susquehanna River Basin and one site in the Ohio River Basin during spring and fall 2016 and 2017. The anterior kidney was aseptically removed and homogenized for leukocyte isolation. Leukocytes were tested for bactericidal activity against two species of bacteria; respiratory burst activity when stimulated with phorbol 12-myristate 13-acetate; and mitogenesis activity when stimulated with concanavalin A, phytohemagglutinin, and lipopolysaccharide. Tissues were preserved for histopathological analyses. Two of the sites were part of a monitoring program at which surface-water samples were collected monthly (bimonthly in spring) for chemical contaminants. Significant seasonal and (or) site differences in all three immune function tests were observed. Interpretations of seasonal trends in immune function of wild fish or correlations with environmental variables and other factors are difficult to make owing to the complex nature of the immune response and the environment. Differences in immune function could potentially be related to a variety of confounding factors; therefore, additional endpoints and repeated sampling over an extended period are essential to draw conclusions on the immune status of wild fish.

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USGS2020

Ultrasonic Acoustic Surveys of State Endangered Northern Flying Squirrels in the Pocono Mountains, Pennsylvania

Surveying for flying squirrels by using traditional techniques produces extremely low detection rates compared with ultrasonic acoustics. Within Pennsylvania, the northern flying squirrel subspecies Glaucomys sabrinus macrotis is state listed as endangered due to habitat loss and parasite-mediated competition by and hybridization with the southern flying squirrel Glaucomys volans . This subspecies is isolated from adjacent populations in West Virginia and New York and has experienced drastic population declines. The discovery and characterization of ultrasonic vocalizations of G. s. macrotis and G. volans , as well as successful field surveys with ultrasonic acoustic detectors in the southern Appalachian Mountains, highlight the potential use of this technique for determining the presence of G. s. macrotis . To confirm the feasibility of using this technique on declining populations of G. s. macrotis sympatric with G. volans , we conducted 108 nights of passive ultrasonic acoustic surveys for G. s. macrotis at six survey sites by using two detectors per survey site ( N = 12 detectors) in June 2017. We considered sites high quality (“high”) or low quality (“low”) based on the number of physical capture records during the past 2 decades and the dominance of boreo-montane conifer tree species in the overstory. We detected G. s. macrotis at four study sites and G. volans at all six study sites. We found higher average probability of detection for G. s. macrotis in high vs. low sites (0.28 ± 0.06 [mean ± SE] and 0.09 ± 0.07, respectively), whereas probability of detection was similar for G. volans between high and low sites (0.13 ± 0.05 and 0.17 ± 0.05, respectively). We also found G. s. macrotis had lower latency of detection at high vs. low sites (2.7 ± 0.8 and 7.83 ± 1.5 nights, respectively) but G. volans did not vary in latency of detection between sites (5 ± 1.6 and 3.8 ± 1.5 nights, respectively). Our study shows acoustics can be successfully used to efficiently survey G. s. macrotis in Pennsylvania, where populations are small and monitoring these populations more effectively is critical to determining changes in persistence due to climate- and disease-induced factors.

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USGS2020

Groundwater quality in relation to drinking water health standards and hydrogeologic and geochemical characteristics for 47 domestic wells in Potter County, Pennsylvania, 2017

As part of a regional effort to characterize groundwater in rural areas of Pennsylvania, water samples from 47 domestic wells in Potter County were collected from May through September 2017. The sampled wells had depths ranging from 33 to 600 feet in sandstone, shale, or siltstone aquifers. Groundwater samples were analyzed for physicochemical properties that could be evaluated in relation to drinking-water health standards, geology, land use, and other environmental factors. Laboratory analyses included concentrations of major ions, nutrients, bacteria, trace elements, volatile organic compounds (VOCs), ethylene and propylene glycol, alcohols, gross-alpha/beta-particle activity, uranium, radon-222, and dissolved gases. A subset of samples was analyzed for radium isotopes (radium-226 and -228) and for the isotopic composition of methane. Results of this 2017 study show that groundwater quality generally met most drinking-water standards that apply to public water supplies. However, a percentage of samples exceeded maximum contaminant levels (MCLs) for total coliform bacteria (69.6 percent), Escherichia coli (30.4 percent), arsenic, and barium; and secondary maximum contaminant levels (SMCLs) for field pH, manganese, sodium, iron, total dissolved solids, aluminum, and chloride. All of the analyzed VOCs were below limits of detection and associated drinking water criteria. Radon-222 activities exceeded the proposed drinking-water standard of 300 picocuries per liter in 80.9 percent of the samples. The field pH of the groundwater ranged from 4.6 to 9.0. Generally, the lower pH samples had greater potential for elevated concentrations of dissolved metals, including beryllium, copper, lead, nickel, and zinc, whereas the higher pH samples had greater potential for elevated concentrations of total dissolved solids, sodium, fluoride, boron, and uranium. Near-neutral samples (pH 6.5 to 7.5) had greater hardness and alkalinity concentrations than other samples with pH values outside this range. Calcium/bicarbonate waters were the predominant hydrochemical type for the sampled aquifers, with mixed water types for many samples, including variable contributions from calcium, magnesium, and sodium combined with bicarbonate, sulfate, chloride, and nitrate. Water from 45 wells had concentrations of methane greater than the 0.0002 milligrams per liter (mg/L) detection limit. One sample had the maximum value of 11 mg/L, which exceeds the Pennsylvania action level of 7 mg/L. Additionally, three other samples had concentrations of methane greater than 4 mg/L. Outgassing of such levels of methane from the water to air within a confined space can result in a potential hazard. The elevated concentrations of methane generally were associated with suboxic groundwater (dissolved oxygen less than 0.5 mg/L) that had near-neutral to alkaline pH with relatively elevated concentrations of iron, manganese, ammonia, lithium, fluoride, and boron. Other constituents, including barium, sodium, chloride, and bromide, commonly were elevated, but not limited to, those well-water samples with elevated methane. Low levels of ethane (as much as 1.2 mg/L) were present in eight samples with the highest methane concentrations. Five samples were analyzed for methane isotopes. The isotopic and hydrocarbon compositions in these five samples suggest the methane may be of microbial origin or a mixture of thermogenic and microbial gas, but differed from the compositions reported for mud-gas logging samples collected during drilling of gas wells. The concentrations of sodium (median 8.2 mg/L), chloride (median 7.64 mg/L), and bromide (median 0.02 mg/L) for the 47 groundwater samples collected for this study ranged widely and were positively correlated with one another and with specific conductance and associated measures of ionic strength. Sixty percent of the Potter County well-water samples had chloride concentrations less than 10 mg/L. Samples with higher chloride concentrations had variable bromide concentrations and corresponding chloride/bromide ratios that are consistent with sources such as road-deicing salt and septic effluent (low bromide) or brine (high bromide). Brines are naturally present in deeper parts of the regional groundwater system and, in some cases, may be mobilized by gas drilling. It is also possible that valley wells were drilled close to or into the brine-freshwater interface, so brine signatures do not necessarily indicate contamination due to drilling. The chloride, bromide, and other constituents in road-deicing salt or brine solutions tend to be diluted by mixing with fresh groundwater in shallow aquifers used for water supply. Although 1 of 8 groundwater samples with the highest methane concentrations (greater than 0.2 mg/L) had concentrations of chloride and bromide with corresponding chloride/bromide ratios that indicated mixing with road-deicing salt, the other 7 of 8 samples with elevated methane had concentrations of chloride and bromide with corresponding chloride/bromide ratios that indicated mixing with a small amount of brine (0.02 percent or less) similar in composition to those reported for gas and oil well brines in Pennsylvania. In several eastern Pennsylvania counties where gas drilling is absent, groundwater with comparable chloride/bromide ratios and chloride concentrations have been reported. Approximately 50 percent of Potter County well-water samples, including two samples with the fourth (72.9 mg/L) and fifth (47.0 mg/L) highest chloride concentrations, have chloride/bromide ratios that indicate predominantly anthropogenic sources of chloride, such as road-deicing salt or septic effluent.

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USGS2020

A fishery after the decline: The Susquehanna River Smallmouth Bass story

The Smallmouth Bass Micropterus dolomieu fishery in the Susquehanna River basin, Pennsylvania, is one of the most socioeconomically important fisheries in the region and has recently undergone considerable changes. These changes started in 2005, when disease was documented in young-of-the-year (age-0) Smallmouth Bass. Shortly thereafter, declines in abundance of both juveniles and adults were observed. These declines in abundance coincided with disease infections in age-0, intersex in adults, and concerns regarding contaminant exposure. Natural mortality rates, particularly for age-0, increased during this period (2005–2011), and there were concerns for the overall health of this world-class fishery. However, in recent years (2012–2017), there have been decreases in both mortality rates and external observations of disease and increases in abundance across multiple size-classes. Recent changes are encouraging for the future of the Smallmouth Bass fishery in the Susquehanna River. Yet, in light of the ever changing environmental, social, and anthropogenic influences on aquatic ecosystems, there remain concerns for Smallmouth Bass health and management. Because of this, ongoing research efforts are needed to monitor population and health changes and to conduct integrative research that considers complex relationships between organisms and their environments.

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USGS2020

Groundwater quality in relation to drinking water health standards and geochemical characteristics for 54 domestic wells in Clinton County, Pennsylvania, 2017

Despite the reliance on groundwater by approximately 2.4 million rural Pennsylvania residents, publicly available data to characterize the quality of private well water are limited. As part of a regional effort to characterize groundwater in rural areas of Pennsylvania, samples from 54 domestic wells in Clinton County were collected and analyzed in 2017. The samples were evaluated for a wide range of constituents and compared to drinking-water health standards and geochemical characteristics. The sampled wells were completed to depths ranging from 46 to 500 feet in bedrock that was of predominantly sandstone, shale, or carbonate lithology. Results of this study show that the sampled groundwater quality in Clinton County generally met most drinking-water standards that apply to public water supplies. However, a percentage of samples exceeded drinking-water maximum contaminant levels (MCLs) for total coliform bacteria (57.4 percent), Escherichia coli ( E. coli ) (25.9 percent), nitrate (1.9 percent), and arsenic (1.9 percent); and secondary maximum contaminant levels (SMCLs) for pH (31.5 percent), manganese (29.6 percent), iron (13 percent), total dissolved solids (7.4 percent), aluminum (1.9 percent), and chloride (1.9 percent). Sodium concentrations exceeded the U.S. Environmental Protection Agency drinking-water advisory recommendation in 16.7 percent of the samples. Radon-222 activities exceeded the proposed drinking-water standard of 300 picocuries per liter (pCi/L) in 59.3 percent of the samples. The only volatile organic compounds (VOCs) detected were acetone and methyl ethyl ketone in two separate samples; neither constituent exceeded drinking-water standards. Higher median nitrate concentrations were found in the carbonate (3.26 milligrams per liter [mg/L]) versus shale (less than 0.04 mg/L) and sandstone (0.27 mg/L) aquifer subsets. Most of the elevated nitrate concentrations were associated with E. coli detections in the carbonate aquifers, where transmissive bedrock can facilitate groundwater contamination by human activities at the land surface. The median pH of groundwater from the sandstone aquifers (6.53) was less than those for the shale aquifers (7.31) and carbonate aquifers (7.43). Generally, the lower pH samples had greater potential for elevated concentrations of dissolved metals, including beryllium, copper, lead, nickel, and zinc, whereas the higher pH samples had greater potential for elevated concentrations of total dissolved solids, sodium, fluoride, boron, and uranium. Near-neutral samples (pH 6.5 to 7.5) had greater hardness and alkalinity concentrations than other samples with pH outside this range. Many samples from the shale or sandstone aquifers, particularly those with pH less than 6.5, were identified as having serious potential corrosivity based on the combination of the calcite saturation index and the chloride to sulfate mass ratio; however, none of the samples from the carbonate aquifers was identified as seriously corrosive. Groundwater from 3.7 percent of the wells had concentrations of methane greater than the Pennsylvania action level of 7 mg/L, and 48 of the 54 wells (88.9 percent) had detectable concentrations of methane greater than the 0.0002 mg/L detection limit. Greater methane concentrations were found more frequently in groundwater sampled from the shale aquifers than the carbonate or sandstone aquifers in the study area. Most of the samples containing elevated methane (greater than 0.2 mg/L) were located outside the area of the Appalachian Plateaus. The elevated concentrations of methane generally were associated with suboxic groundwater (dissolved oxygen less than 0.5 mg/L) that had near-neutral to alkaline pH and were correlated with concentrations of iron, manganese, ammonia, sodium, lithium, barium, fluoride, and boron. The stable carbon and hydrogen isotopic compositions of methane in two of four samples analyzed for isotopes were consistent with compositions reported for mud-gas logging samples from gas-bearing geologic units (thermogenic gas) in the Appalachian Plateaus region, whereas two others were consistent with methane of microbial origin or a mixture of microbial and thermogenic gas. Forty-two percent of samples had chloride concentrations greater than 20 mg/L with variable bromide concentrations. Corresponding chloride/bromide ratios are consistent with low-bromide sources such as road-deicing salt and septic effluent or animal waste, or, in a few cases, high-bromide brine. Brines characterized by relatively high bromide are naturally present in deeper parts of the regional groundwater system and, in some cases, may be mobilized by gas drilling. The chloride, bromide, and other constituents in road-deicing salt or brine solutions tend to be diluted by mixing with fresh groundwater in shallow aquifers used for water supply. One of the four groundwater samples with methane concentrations greater than 4 mg/L had chloride and bromide concentrations and a chloride/bromide ratio that indicates mixing with a salinity source such as road-deicing salt, whereas the chloride and bromide concentrations and ratios for the other three high-methane samples indicate mixing with a small amount of brine (0.03 percent or less). In two other eastern Pennsylvania county studies where gas drilling is absent, groundwater with comparable chloride/bromide ratios, bromide, and chloride concentrations plus other element associations have been reported. Additional sampling and analysis, such as isotopic analysis of the dissolved gas, fracture analysis, and more detailed evaluation of surrounding land uses, may be warranted to better understand the origin of the methane and brine constituents in groundwater at specific locations.

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USGS2020

Effects of legacy sediment removal and effects on nutrients and sediment in Big Spring Run, Lancaster County, Pennsylvania, 2009–15

Big Spring Run is a 1.68-square mile watershed underlain by mostly carbonate rock in a mixed land-use setting (part agricultural and part developed) in Lancaster County, Pennsylvania. Big Spring Run is a subwatershed of Mill Creek, a tributary to the Conestoga River. These watersheds are known contributors of nutrient and sediment loads to the Chesapeake Bay and several stream reaches are on the Pennsylvania impaired waters list. Big Spring Run is listed as impaired and was selected by the Pennsylvania Department of Environmental Protection to evaluate a novel best management practice to restore natural aquatic ecosystems by removing legacy sediment. The study was designed to quantify sediment and nutrient contributions in pre- and postrestoration periods (water years 2009–11 and 2012–15, respectively) using an intensive monitoring approach at three surface-water sites within the watershed. Instrumentation at each site continuously measured (15-minute intervals) streamflow, water temperature, and turbidity. Water-quality samples were collected routinely (generally monthly and during selected storms); sampling frequency varied by site and constituent at the three monitoring sites. Effects of legacy sediment removal and restoration on nutrient concentrations varied in surface water samples depending on the form (particulate, dissolved, organic, inorganic). For example, total phosphorus concentrations at the downstream site decreased from a median of 0.19 milligram per liter (mg/L) to 0.04 mg/L, pre- and postrestoration periods, respectively. Concentrations of orthophosphate, the dissolved form of phosphorus, were not significantly different pre- to postrestoration at the downstream site. Similarly, nitrate concentrations, the dominant form of nitrogen in Big Spring Run surface-water samples (92.3 percent of total nitrogen) were not significantly different in the pre- compared to the postrestoration periods. Legacy sediment removal and restoration had significant effects on suspended-sediment concentrations and loads. Median suspended-sediment concentrations at the downstream site decreased from 556 mg/L prerestoration to 74 mg/L postrestoration even though streamflow hydrographs during the two periods were similar. In the postrestoration period, the mean annual suspended-sediment load conveyed to the restoration area from the upstream sites was 839 tons, whereas mean annual suspended-sediment load at the downstream site was reduced to 242 tons. Streamflow during storms transports a large proportion of the suspended-sediment load; there were a total of 320 storms over the study period. In Big Spring Run, a single storm event can transport more than 25 percent of the annual suspended-sediment load. The greatest single-storm contribution to suspended-sediment load was 38 percent in water year 2015 at the downstream site. Although streamflow magnitudes during storms varied greatly over the study period, median streamflow was 17.5 cubic feet per second and median duration was about 3 hours and 24 minutes. Results observed for this study using the newly proposed best management practice were compared with other best management practices intended to reduce sediment. For example, during a previous study, statistically significant reductions in suspended-sediment concentration were observed when streambank fencing was implemented in an adjacent watershed; however, suspended-sediment reductions were an order of magnitude less than the reductions observed in the current study. Median suspended-sediment concentration at the downstream site was reduced by 482 mg/L in the current study compared to only 30 to 46 mg/L as a result of streambank fencing.

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USGS2020

Assessment of microscopic pathology in fishes collected at sites impacted by wood tar in Pennsylvania

In an effort to determine whether fish populations in an area affected by wood tar waste exhibited health effects, fish were collected and analyzed with histopathology. Multiple species, including Mottled Sculpin ( Cottus bairdii ), Creek Chub ( Semotilus atromaculatus ), White Sucker ( Catostumus commersonii ), Redside Dace ( Clinostomus elongatus ), Common Shiner ( Luxilus cornutus ), and Western Blacknose Dace ( Rhinichthys obtusus ) were sampled from a reference site, Meade Run, and potentially affected streams, Kinzua Creek and Threemile Run, in northwestern Pennsylvania. A full histopathological evaluation was conducted to identify microscopic abnormalities potentially associated with wood tar exposure. The evaluation identified primarily parasites associated with tissue changes. These included microsporidian parasites in the ovaries of Common Shiner and Western Blacknose Dace; myxozoan cysts in the muscle of Common Shiner, Creek Chub, and Western Blacknose Dace; trematode cysts in the muscle of Creek Chub, Redside Dace and Common Shiner; and coccidia in spleen or pancreas of Creek Chub and Common Shiner. Microscopic abnormalities potentially associated with chemical exposure included ceroid/lipofuscin deposits in the meninges of the olfactory lobe of the brain in Common Shiner, Western Blacknose Dace, and Creek Chub, as well as bile duct proliferation and a biliary tumor in Creek Chub. Overall, the findings did not reveal significant microscopic pathology consistent with exposure to wood tar waste.

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USGS2020

Septic systems and rainfall influence human fecal markers and indicator organisms occurrence in private wells in southeastern Pennsylvania

In the United States approximately 48 million people are served by private wells. Unlike public water systems, private well water quality is not monitored and there are few studies on the extent and sources of contamination of private wells. We extensively investigated five private wells to understand the variability in microbial contamination, the role of septic systems as sources of contamination, and the effect of rainfall on well water quality. From 2016-2017, weekly or biweekly samples (n= 105) were collected from 5 private wells in rural Pennsylvania. Samples were tested for general water quality parameters, conventional and sewage-associated microbial indicators, and human pathogens. Total coliforms, human Bacteroides (HF183), and pepper mild mottle virus were detected at least once in all wells. Regression revealed significant relationships between HF183 and rainfall 8-14 days prior to sampling and between total coliforms and rainfall 8-14 or 0-14 days prior to sampling. Dye tracer studies at 3 wells confirmed the impact of household septic systems on well contamination. Microbiological measurements, chemical water quality data, and dye tracer tests provide evidence of human fecal contamination in the private wells studied, suggesting that household septic systems are the source of this contamination.

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USGS2020

Groundwater withdrawals and regional flow paths at and near Willow Grove and Warminster, Pennsylvania—Data compilation and preliminary simulations for conditions in 1999, 2010, 2013, 2016, and 2017

In 2014, groundwater samples from residential and public supply wells in the vicinity of two former U.S. Navy bases at Willow Grove and Warminster, and an active Air National Guard Station at Horsham, Bucks and Montgomery Counties, Pennsylvania, were found to have concentrations of perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS), which are per- and polyfluoroalkyl substances (PFAS), above U.S. Environmental Protection Agency (EPA) provisional health advisory (HA) levels for drinking water. Five supply wells near the bases were shut down because of PFAS contamination. In 2016, after EPA established a Lifetime HA for PFAS in drinking water that is lower than the provisional HA in place in 2014, at least 13 additional supply wells near the bases were shut down because of PFAS contamination. At the request of the U.S. Navy, and in consultation with other Federal and State agencies and local stakeholders, the U.S. Geological Survey used historical and recent data on well withdrawals, recharge rates, aquifer properties, groundwater levels, and stream base flow to evaluate regional groundwater-flow paths from identified areas of PFAS groundwater contamination or potential PFAS sources at the bases. Groundwater withdrawals near the bases from public supply and other large wells decreased substantially from the 1990s to 2017, increasing the proportion of groundwater recharge that discharged to local streams. A preliminary groundwater-flow model, calibrated using 1,009 groundwater levels and 17 stream base flow estimates, simulated regional flow paths from the bases and showed that recharge at the bases discharged to withdrawal wells and local streams, generally within a mile or two of the bases. Supply and remediation wells at the bases captured some of the recharge on base areas of possible PFAS contamination, whereas other base recharge was simulated to flow to nearby public supply wells and streams, depending on water use and aquifer recharge conditions between 1999 and 2017. The locations of many residential wells near the bases that were identified by the Navy and Air National Guard as having elevated PFAS concentrations were generally consistent with the simulated flow paths from possible sources at the bases. However, there are some areas of observed PFAS contamination where no flow paths from base sources were simulated. Additionally, no data were available on PFAS concentrations in groundwater in some areas of simulated flow paths from base sources. Data and models used for this study are provided in this report and in digital data releases to support further investigations and model revisions.

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USGS2020

Shale gas development has limited effects on stream biology and geochemistry in a gradient-based, multiparameter study in Pennsylvania

The number of horizontally drilled shale oil and gas wells in the United States has increased from nearly 28,000 in 2007 to nearly 127,000 in 2017, and research has suggested the potential for the development of shale resources to affect nearby stream ecosystems. However, the ability to generalize current studies is limited by the small geographic scope as well as limited breadth and integration of measured chemical and biological indicators parameters. This study tested the hypothesis that a quantifiable, significant relationship exists between the density of oil and gas (OG) development, increasing streamwater concentrations of known geochemical tracers of OG extraction, and the composition of benthic macroinvertebrate and microbial communities. 25 headwater streams that drain lands across a gradient of shale gas development intensity were sampled. Our strategy included comprehensive measurements across multiple seasons of sampling to account for temporal variability of geochemical parameters, including known shale OG geochemical tracers, and microbial and benthic macroinvertebrate communities. No significant relationships were found between the intensity of OG development, shale OG geochemical tracers, or benthic macroinvertebrate or microbial community composition, whereas significant seasonal differences in stream chemistry were observed. These results highlight the importance of considering spatial and temporal variability in stream chemistry and biota and not only the presence of anthropogenic activities in a watershed. This comprehensive, integrated study of geochemical and biological variability of headwater streams in watersheds undergoing OG development provides a robust framework for examining the effects of energy development at a regional scale.

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USGS2020

Seasonal drivers of chemical and hydrological patterns in roadside infiltration-based green infrastructure

Infiltration-based green infrastructure has become a popular means of reducing stormwater hazards in urban areas. However, the long-term effects of green infrastructure on the geochemistry of roadside environments are poorly defined, particularly given the considerable roadside legacy metal contamination from historic industrial activity and vehicle emissions (e.g., Pb). Most current research on green infrastructure geochemistry is restricted to time periods of less than a year or limited sets of chemical species. This further limits our understanding of systems that evolve over time and are subject to seasonal variability. Between 2016 and 2018, two infiltration trenches in Pittsburgh, PA, were monitored to determine infiltration rates and dissolved nutrient and metal content. The trench water was analyzed to characterize seasonal patterns in both trench function and chemistry. Shifting patterns in infiltration rate and geochemical activity show trends corresponding with seasonal changes. Trench function is dependent on the local water table, with the highest infiltration rates occurring when evapotranspiration is active and groundwater elevation is low. Two seasonal chemical patterns were identified. The first is driven by road salt application in the winter and interaction of the salt pulse increase Pb and Cu concentrations. The second is driven by the formation of summer reducing environments that increase dissolved Fe and Mn. These findings suggest that chemical and hydrological activity in infiltration-based green infrastructure varies seasonally and may remobilize legacy contamination.

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USGS2020

Modified QuEChERS extraction for the analysis of young-of-year smallmouth bass using GC × GC-TOFMS

Signs of disease, such as external lesions, have been prevalent in smallmouth bass throughout the Susquehanna River Basin, USA. Previous targeted chemical studies in this system have identified known persistent organic pollutants, but a common explanatory link across multiple affected sites remains undetermined. A fast and robust extraction method that can be applied to young-of-year fish is needed to effectively screen for target and non-target compounds that may be impacting organism health. The quick, easy, cheap, effective, rugged, and safe (QuEChERS) extraction methodology was optimized to perform both targeted and non-targeted chemical analyses from a single extraction of whole young-of-year fish. Comprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry (GC × GC-TOFMS) was used for extract analysis. Sample extraction was performed using the solvent ethyl acetate, followed by a two-step cleanup in which samples were frozen for lipid removal and subjected to dispersive solid phase extraction using Florisil. A sample of 21 young-of-year smallmouth bass collected from areas with disease and exhibiting different types of external lesions were evaluated for 233 target compounds. A total of 34 organic contaminants, including polychlorinated biphenyls, brominated diphenyl ethers, organochlorinated pesticides, and personal care products, were detected. Data from this sample set was then analyzed for non-targets. Using the Fisher ratio method and multivariate analysis, an additional 10 significant features were identified specific to either fish with visible lesions or with no visible disease characteristics.

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USGS2020

Resource use by American black bear in suburbia: A landholder step selection approach

Range expansion of American black bear ( Ursus americanus ; bear) and residential development has resulted in a growing presence of bear in suburbia. Suburban landscapes exhibiting patchworks of variable-sized parcels and habitats and owned by landowners with diverse values, can create large areas of suitable habitats with limited public access. These landscapes thereby may limit the effectiveness of hunting as a traditional bear population management tool. Managers require better information regarding suburban landowner attitudes regarding hunting before implementing changes intended to increase bear harvest to management populations. To address this need, in 2013, we surveyed landowners to identify properties that allowed bear hunting in three suburban areas of Pennsylvania where bear sightings have increased. We then used location data obtained for 29 bears equipped with global positioning system (GPS) transmitters from 2010 to 2012 to model their resource selection in the study area. We assessed the influence of hunting access, housing density, land cover, and topographic variables on radio-marked black bear monitored 10 days before, during, and after the bear hunting season. We found that resource selection of radio-marked bear was similar for all three periods and bears selected for forested land in all three seasons and herbaceous cover in the pre- and hunting periods. Resource selection by bears was not influenced by whether land was open or closed to hunting in the pre-hunting and hunting periods, but in the post-hunting period lands not open to hunting had support as the second-best model. All radio-marked bears in our study were vulnerable to harvest. However, they did not change resource selection during the hunting season nor did they avoid areas open to hunting. Integrating human dimension data with bear habitat use studies, especially in suburban landscapes, has the potential to address bear space use and population management needs often overlooked in traditional research designs.

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USGS2020

The influence of hunting pressure and ecological factors on fecal glucocorticoid metabolites in wild elk

Climate change and human population growth have increased anthropogenic threats to biodiversity and habitat fragmentation. Ecologists and conservationists need tools to assess the effect of these ecological and environmental perturbations on organismal fitness. One possibility is glucocorticoids (e.g., cortisol and corticosterone) which integrate various factors such as anthropogenic disturbances, predation, food, or environmental stressors. Here we tested the hypothesis that fecal glucocorticoid metabolite concentrations (GCMs) in wild female elk ( Cervus canadensis ) increased as the hunting season progressed. We also examined the influence of year, food availability, and elk group size on fecal GCMs. We found that as the hunting season progressed, fecal GCMs tended to decrease. We also found that as the number of cows in a group increased, GCMs decreased, and found a strong effect of year on fecal GCMs, with samples collected in 2016 having lower fecal GCMs than those collected in 2015, 2017, and 2018. However, yearly variation was not driven by availability of hard mast forage. The lack of positive association between hunting pressure and fecal GCMs and identifying what is driving yearly variation in fecal GCMs warrants further study. We highlight the negative influence of group size, possibly due to vigilance, on fecal GCMs and the importance of examining ecologically relevant covariates to accurately identify main treatment effects.

Pennsylvania↗

USGS2019

Development of regression equations for the estimation of flood flows at ungaged streams in Pennsylvania

Regression equations, which may be used to estimate flood flows at select annual exceedance probabilities, were developed for ungaged streams in Pennsylvania. The equations were developed using annual peak flow data through water year 2015 and basin characteristics for 285 streamflow gaging stations across Pennsylvania and surrounding states. The streamgages included active and discontinued continuous-record stations, as well as crest-stage partial-record stations, and required a minimum of 10 years of annual peak streamflow data for inclusion in the study. Explanatory variables significant at the 95-percent confidence level for one or more regression equations included the following basin characteristics: drainage area, maximum basin elevation, mean basin slope, percent storage, and the percentage of carbonate bedrock within a basin. The State was divided into five regions, and regional regression equations were developed to estimate flood flows associated with the 50-, 20-, 10-, 4-, 2-, 1-, 0.5-, and 0.2-percent annual exceedance probabilities (which correspond to the 2-, 5-, 10-, 25-, 50-, 100-, 200-, and 500-year recurrence intervals, respectively). Although the regression equations can be used to estimate the magnitude of flood flows for most streams in the State, they are not valid for streams with drainage areas generally greater than 1,500 square miles or with substantial regulation, diversion, or mining activity within the basin. The regional regression equations will be incorporated into the U.S. Geological Survey StreamStats application ( https://water.usgs.gov/osw/streamstats/ ). Additionally, annual peak flow data for 356 streamgages initially considered for inclusion in the analysis for development of updated flood-flow regression equations were analyzed for the existence of trends; estimates of flood-flow magnitude and frequency were also computed for these streamgages. Estimates of flood-flow magnitude and frequency for streamgages substantially affected by upstream regulation are also presented.

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USGS2019

Baseline environmental monitoring of groundwater, surface water, and soil at the Ammonium Perchlorate Rocket Motor Destruction Facility at the Letterkenny Army Depot, Chambersburg, Pennsylvania, 2016

Letterkenny Army Depot in Chambersburg, Pennsylvania, built an Ammonium Perchlorate Rocket Motor Destruction (ARMD) facility in 2016. The ARMD Facility was designed to centralize rocket motor destruction and contain or capture all waste during the destruction process. Ideally, there would be no contaminant transport to air, soil, or water from the facility, but the Code of Federal Regulations requires that any hazardous waste disposal facility have an environmental monitoring program in place. In a study by the U.S. Geological Survey, in cooperation with the Letterkenny Army Depot, baseline characterization of constituents in groundwater, surface water, and soil was conducted from September to December 2016 to document site conditions prior to the beginning of operations at the facility in January 2017. Groundwater wells, surface water, and soils were sampled monthly during the baseline characterization period. No sediment transport from the site occurred on days when samples were collected from surface-water sites, so no sediment was collected from the retention basin at the facility during the baseline period. Data collected during the baseline period can be compared to data collected in future years to determine whether there is any contaminant transport from the ARMD Facility to the surrounding environment. During the baseline characterization period, monthly samples were collected from 4 groundwater wells and 9 soil sites near the ARMD Facility. The only surface-water site sampled monthly during the baseline period was upgradient from the facility. There was no streamflow at surface-water sites downgradient from the facility on days when surface-water samples were collected during the baseline characterization period. Groundwater results for the four wells sampled near the ARMD Facility during the baseline period did not show any major water-quality issues. Mean specific conductance (SC) and pH in groundwater ranged from 220 to 771 microsiemens per centimeter at 25 degrees Celsius (μS/cm) and 6.45 to 6.98, respectively. No constituents in groundwater samples exceeded any U.S. Environmental Protection Agency (EPA) Maximum Contaminant Level (MCL). Dissolved iron (Fe) was the only groundwater constituent that exceeded a Secondary Maximum Contaminant Level (SMCL) established by the EPA. The SMCL for Fe is 300 micrograms per liter (μg/L); samples from three wells had mean dissolved Fe concentrations ranging from 1,100 to 2,600 μg/L. The only volatile organic compounds (VOCs) detected in groundwater samples were bromomethane, acetone, and chloromethane. All VOC detections in groundwater samples were less than the Reporting Detection Levels (RDLs). These three compounds also were detected in blank samples submitted for groundwater samples. Perchlorate was not detected in any groundwater sample collected during the baseline period. Surface-water data collected during the baseline period were strictly representative of a stream reach upgradient from the ARMD Facility. Stream discharge ranged from 0.03 to 0.08 cubic feet per second during sample collection. The mean SC and pH were 310 μS/cm and 7.6, respectively. No EPA established MCLs or SMCLs were exceeded for any constituents in samples collected from this upgradient stream. Some VOCs were detected in surface water at less than the RDLs. The VOCs detected in surface water were generally the same VOCs as those detected at less than the RDLs for groundwater. Perchlorate was detected in each sample collected from the stream; the mean concentration was 0.07 μg/L. All perchlorate results were less than the RDL of 0.2 μg/L. Soil samples collected during the baseline period did not have any constituent concentrations that exceeded any medium-specific concentrations (MSC) or soil screening levels (SSL) established by either the Commonwealth of Pennsylvania or the EPA. The Commonwealth of Pennsylvania calculates MSCs based on either a function of acceptable concentrations in groundwater or based on health concerns if the soil is directly contacted. The EPA derives acceptable concentrations of constituents (SSLs) in soil based on standardized equations combining exposure information assumptions with EPA toxicity data. The EPA calculates SSLs for residential and industrial sites. Soil sites at the ARMD Facility were considered “industrial” for comparative purposes. There was at least one order of magnitude difference between any inorganic constituent concentration detected in soil and the MSC and (or) SSL for that constituent. Four VOCs were detected in soil samples collected during the baseline period. None of the VOCs detected in the soils were within three orders of magnitude of any established MSCs or SSLs. The VOCs detected in soil were dichloromethane (also known as methylene chloride), methyl tert-butyl ether (MTBE), tetrachloroethene, and acetone (only detected once). Dichloromethane was the only VOC detected at greater than the RDLs; concentrations in all soil samples were greater than the RDLs. Dichloromethane concentrations ranged from 1.9 to 50.1 micrograms per kilogram (μg/kg). MTBE was detected in 50 percent of samples collected but all results were less than the RDLs of 1.7 to 2.6 μg/kg. Tetrachloroethene was detected in 20 percent of soil samples collected, with a maximum estimated value of 1.5 μg/kg. Inorganic constituents with the highest concentrations in soil were Fe and aluminum (Al); mean Fe and Al concentrations ranged from 28,700 to 52,400 and 10,300 to 19,800 milligrams per kilogram (mg/kg), respectively. Data collected during the baseline period in 2016 can be compared to future data to determine whether concentrations in water and soils surrounding the facility have shown any changes that could be caused by the facility operation.

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USGS2019

Soil chemistry, and not short-term (1–2 year) deer exclusion, explains understory plant occupancy in forests affected by acid deposition

The loss of species diversity and plant community structure throughout the temperate deciduous forests of North America have often been attributed to overbrowsing by white-tailed deer ( Odocoileus virginanus ). Slow species recovery following removal from browsing, or reduction in deer density, has been termed a legacy effect of past deer herbivory. However, vegetation legacy effects have also coincided with changes to soil chemistry throughout the north-eastern USA. In this paper, we assess the viability of soil chemistry (i.e. pH, extractable nutrients and extractable metals) and other factors (topography, light, overstory basal area and location) as alternative explanations for a lack of vegetation recovery. We compared the relative effects of soil chemistry, site conditions and short-term (1–2 year) deer exclusion on single-species occupancy probabilities of 10 plant taxa common to oak-hickory forests in central Pennsylvania. We found detection for all modelled species was constant and high ( ⁠ p ^ "> p ^ p^ > 0.65), and occupancy probability of most taxa was best explained by at least one soil chemistry parameter. Specifically, ericaceous competing vegetation was more likely to occupy acidic (pH < 3.5), base cation-poor (K < 0.20 cmol c kg −1 ) sites, while deer-preferred plants were less likely to occur when soil manganese exceeded 0.1 cmol c kg −1 . Short-term deer exclusion did not explain occupancy of any plant taxon, and site conditions were of nominal importance. This study demonstrates the importance of soil chemistry in shaping plant community composition in the north-central Appalachians, and suggests soil as an alternative, or additional, explanation for deer vegetation legacy effects. We suggest that the reliance on phyto-indicators of deer browsing effects may overestimate the effects of browsing if those species are also limited by unfavourable soil conditions. Future research should consider study designs that address the complexity of deer forest interactions, especially in areas with complex site-vegetation histories.

Pennsylvania↗

USGS2019

Effect of male age structure on reproduction in white-tailed deer

Selective harvest regimes that create female-biased sex ratios can potentially lead to delayed breeding, reduced breeding synchrony, reduced productivity, and a female-biased sex ratio of offspring. These resulting changes in breeding behavior and population dynamics have potential to adversely affect population growth. In 2002, Pennsylvania implemented harvest regulation changes that reduced deer density (increased harvest of antlerless deer) and increased the number and age of antlered deer (implemented antler point restriction regulations) that resulted in a less female-biased sex ratio. We monitored date of conception, productivity (embryos/female), and sex ratio of embryos during 1999–2006 to test if timing of breeding occurred earlier and with greater synchrony, if productivity of females increased, and if the sex ratio of offspring would shift towards more males. Deer density decreased 23% and the adult (≥1.5 yr old) sex ratio declined from 2.30 to 1.95 females/male. The ratio of ≥2.5-year-old to 1.5-year-old males shifted towards more older males (1:3.7 in 2002 to 1:1.59 in 2006) and the ≥2.5-year-old male population increased from 41,853 during 1999–2001 to 54,064 by 2006. We found no evidence of any change in the timing or variability of date of conception, productivity, or offspring sex ratio. We conclude that harvest regulation changes implemented in Pennsylvania, USA, were insufficient to affect timing of breeding or population dynamics and that efforts by managers to identify a desired sex ratio or manipulate sex ratios to achieve management goals on a statewide scale will be challenging.

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